AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377280 MtrunA17_Chr3g0094811 90.323 465 17 1 31 495 21 457 0.0 860
Msa0377280 MtrunA17_Chr2g0304931 62.609 460 138 5 37 493 35 463 0.0 591
Msa0377280 MtrunA17_Chr7g0221551 59.737 457 153 2 39 492 29 457 0.0 577
Msa0377280 MtrunA17_Chr3g0131731 57.505 473 166 6 30 495 20 464 0.0 573
Msa0377280 MtrunA17_Chr8g0385871 56.399 461 168 3 37 492 30 462 0.0 556
Msa0377280 MtrunA17_Chr1g0204191 52.735 457 161 7 37 492 88 490 2.92e-161 466
Msa0377280 MtrunA17_Chr3g0126051 42.562 484 229 7 20 492 18 463 1.60e-138 407
Msa0377280 MtrunA17_Chr3g0126031 43.750 464 217 7 39 492 27 456 6.76e-135 398
Msa0377280 MtrunA17_Chr5g0431301 44.111 467 215 8 39 492 28 461 2.59e-130 386
Msa0377280 MtrunA17_Chr1g0165811 61.818 275 76 2 31 305 21 266 1.06e-121 357
Msa0377280 MtrunA17_Chr4g0038311 39.669 484 230 14 28 492 23 463 6.25e-111 337
Msa0377280 MtrunA17_Chr7g0219051 40.126 476 228 10 37 495 32 467 1.62e-107 328
Msa0377280 MtrunA17_Chr1g0199991 39.615 467 230 11 39 493 31 457 9.38e-107 325
Msa0377280 MtrunA17_Chr3g0090331 39.700 466 225 11 37 492 71 490 8.70e-104 319
Msa0377280 MtrunA17_Chr4g0020241 39.659 469 221 11 37 493 70 488 2.94e-103 318
Msa0377280 MtrunA17_Chr3g0118841 39.610 462 217 12 38 488 76 486 3.58e-102 315
Msa0377280 MtrunA17_Chr1g0199971 38.116 467 237 11 39 493 31 457 1.04e-101 312
Msa0377280 MtrunA17_Chr2g0309541 38.462 468 229 14 43 494 41 465 1.88e-101 312
Msa0377280 MtrunA17_Chr1g0153881 38.380 469 227 11 35 494 84 499 3.32e-101 313
Msa0377280 MtrunA17_Chr2g0309511 38.046 481 240 15 30 494 26 464 6.59e-101 311
Msa0377280 MtrunA17_Chr2g0309521 37.759 482 240 15 30 494 26 464 4.42e-100 309
Msa0377280 MtrunA17_Chr3g0118851 39.355 465 215 13 38 488 75 486 1.45e-99 308
Msa0377280 MtrunA17_Chr4g0047861 37.945 477 232 11 39 493 52 486 8.29e-99 306
Msa0377280 MtrunA17_Chr3g0118881 37.815 476 225 14 38 493 75 499 3.55e-97 302
Msa0377280 MtrunA17_Chr2g0281621 36.478 477 237 10 39 493 34 466 4.96e-97 301
Msa0377280 MtrunA17_Chr1g0153941 37.247 494 217 14 39 494 76 514 9.54e-94 294
Msa0377280 MtrunA17_Chr2g0318911 36.515 482 254 13 25 494 24 465 1.24e-93 292
Msa0377280 MtrunA17_Chr3g0118831 37.234 470 203 11 35 493 72 460 6.46e-91 285
Msa0377280 MtrunA17_Chr1g0165821 75.419 179 42 1 314 492 2 178 1.03e-90 274
Msa0377280 MtrunA17_Chr4g0068841 34.845 485 247 11 37 493 35 478 8.85e-89 280
Msa0377280 MtrunA17_Chr3g0118891 37.229 462 196 14 38 488 75 453 1.13e-87 276
Msa0377280 MtrunA17_Chr7g0229651 64.179 201 70 1 241 439 1 201 2.14e-86 264
Msa0377280 MtrunA17_Chr3g0118861 36.421 475 204 14 37 492 72 467 7.13e-86 272
Msa0377280 MtrunA17_Chr2g0281641 38.071 394 214 9 120 494 7 389 1.08e-81 258
Msa0377280 MtrunA17_Chr4g0068861 34.169 439 218 14 37 447 81 476 5.99e-73 238
Msa0377280 MtrunA17_Chr7g0234051 31.128 514 258 17 35 488 15 492 1.35e-67 225
Msa0377280 MtrunA17_Chr8g0338461 32.530 498 231 16 53 491 44 495 8.67e-66 220
Msa0377280 MtrunA17_Chr7g0249431 31.526 498 242 19 53 491 41 498 5.01e-59 202
Msa0377280 MtrunA17_Chr1g0153931 49.289 211 70 4 40 241 75 257 8.61e-57 190
Msa0377280 MtrunA17_Chr7g0234041 31.320 447 216 15 53 450 40 444 4.64e-53 186
Msa0377280 MtrunA17_Chr2g0285371 26.483 472 277 15 47 491 41 469 5.39e-47 169
Msa0377280 MtrunA17_Chr2g0327401 29.348 460 248 19 54 493 100 502 8.04e-47 170
Msa0377280 MtrunA17_Chr4g0009711 28.510 463 257 17 40 475 39 454 7.70e-46 166
Msa0377280 MtrunA17_Chr2g0285351 24.947 473 284 15 47 491 40 469 1.76e-45 165
Msa0377280 MtrunA17_Chr1g0171411 30.323 465 245 17 52 495 81 487 2.14e-45 166
Msa0377280 MtrunA17_Chr4g0009651 27.292 480 273 17 40 491 39 470 2.72e-45 165
Msa0377280 MtrunA17_Chr4g0028271 29.348 460 237 17 54 488 97 493 6.07e-45 164
Msa0377280 MtrunA17_Chr4g0009701 26.392 485 271 16 40 491 39 470 6.52e-45 164
Msa0377280 MtrunA17_Chr4g0009661 27.292 480 273 17 40 491 39 470 7.59e-45 164
Msa0377280 MtrunA17_Chr1g0199171 28.825 451 247 15 56 488 92 486 8.82e-45 164
Msa0377280 MtrunA17_Chr4g0009681 28.025 471 263 16 40 482 36 458 2.13e-44 162
Msa0377280 MtrunA17_Chr4g0028261 28.817 465 234 17 54 488 118 515 1.07e-43 161
Msa0377280 MtrunA17_Chr2g0285381 26.471 476 265 14 47 491 44 465 1.78e-43 160
Msa0377280 MtrunA17_Chr4g0009671 26.271 472 273 15 47 491 12 435 5.19e-43 158
Msa0377280 MtrunA17_Chr4g0028281 28.947 456 246 19 54 489 95 492 5.45e-42 156
Msa0377280 MtrunA17_Chr3g0093971 25.877 456 278 13 49 486 36 449 2.89e-41 153
Msa0377280 MtrunA17_Chr2g0327381 27.178 482 267 13 54 489 94 537 6.54e-40 151
Msa0377280 MtrunA17_Chr3g0133011 26.681 476 260 15 56 491 70 496 6.62e-40 150
Msa0377280 MtrunA17_Chr7g0229631 54.815 135 31 3 27 161 21 125 2.80e-39 139
Msa0377280 MtrunA17_Chr2g0327371 27.406 478 252 17 57 489 86 513 5.28e-39 148
Msa0377280 MtrunA17_Chr4g0028241 27.897 466 244 18 53 489 88 490 9.75e-38 144
Msa0377280 MtrunA17_Chr4g0009641 25.314 478 261 14 40 491 39 446 8.76e-37 141
Msa0377280 MtrunA17_Chr4g0009721 24.892 462 228 15 40 475 35 403 2.23e-31 125
Msa0377280 MtrunA17_Chr1g0153921 32.377 244 131 9 257 494 3 218 6.67e-31 119
Msa0377280 MtrunA17_Chr7g0229621 55.462 119 23 3 27 145 13 101 9.06e-31 115
Msa0377280 MtrunA17_Chr7g0229611 53.782 119 25 3 27 145 13 101 1.51e-30 114
Msa0377280 MtrunA17_Chr5g0447441 25.364 481 280 19 30 491 17 437 1.84e-25 108
Msa0377280 MtrunA17_Chr4g0006541 50.000 78 39 0 221 298 7 84 2.89e-22 91.7
Msa0377280 MtrunA17_Chr4g0044051 24.190 463 272 16 48 491 39 441 3.65e-21 96.3
Msa0377280 MtrunA17_Chr7g0264221 54.348 92 40 2 401 491 7 97 2.35e-20 86.7
Msa0377280 MtrunA17_Chr2g0279371 30.058 173 82 5 64 228 37 178 1.62e-16 77.8
Msa0377280 MtrunA17_Chr7g0229641 60.417 48 19 0 194 241 43 90 5.04e-15 70.5
Msa0377280 MtrunA17_Chr2g0281631 47.619 63 33 0 39 101 44 106 2.12e-14 69.7
Msa0377280 MtrunA17_Chr5g0423201 100.000 31 0 0 1 31 91 121 1.24e-13 72.4
Msa0377280 MtrunA17_Chr1g0171851 58.333 48 19 1 41 87 2 49 6.32e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377280 AT1G28110.1 60.613 457 149 2 39 492 30 458 0.0 588
Msa0377280 AT1G28110.2 60.613 457 149 2 39 492 30 458 0.0 588
Msa0377280 AT2G33530.1 58.785 461 157 4 37 492 30 462 0.0 571
Msa0377280 AT1G43780.1 44.468 479 223 10 26 492 23 470 3.10e-131 389
Msa0377280 AT5G42240.1 43.923 469 221 8 35 492 27 464 2.65e-129 384
Msa0377280 AT2G12480.3 43.162 468 220 7 35 492 26 457 2.88e-128 381
Msa0377280 AT5G42230.1 43.162 468 226 7 35 492 23 460 4.30e-128 381
Msa0377280 AT5G42230.2 43.162 468 226 7 35 492 23 460 4.30e-128 381
Msa0377280 AT2G12480.4 42.275 466 203 7 35 492 26 433 6.08e-122 364
Msa0377280 AT2G12480.1 41.631 466 204 7 35 492 26 431 9.15e-120 358
Msa0377280 AT2G12480.2 41.542 467 204 8 35 492 26 432 4.81e-118 354
Msa0377280 AT2G24010.1 39.270 466 232 9 37 492 27 451 3.56e-106 324
Msa0377280 AT2G24010.2 39.659 469 241 10 37 492 27 466 7.43e-106 324
Msa0377280 AT4G30610.1 38.737 475 231 11 37 492 29 462 3.46e-105 322
Msa0377280 AT2G35770.1 38.544 467 232 10 39 493 36 459 7.84e-104 318
Msa0377280 AT2G24000.1 37.605 476 234 12 37 491 27 460 1.28e-103 318
Msa0377280 AT5G23210.1 38.911 496 219 13 37 494 48 497 4.34e-103 318
Msa0377280 AT4G15100.1 38.477 486 234 11 34 493 36 482 4.43e-103 317
Msa0377280 AT3G02110.1 39.121 478 229 12 37 492 34 471 5.14e-103 317
Msa0377280 AT1G61130.1 40.042 472 224 12 39 492 30 460 7.85e-103 316
Msa0377280 AT1G11080.1 38.636 484 228 10 37 492 47 489 2.11e-102 316
Msa0377280 AT1G11080.2 38.636 484 228 10 37 492 47 489 2.28e-102 316
Msa0377280 AT3G07990.1 38.412 466 235 12 39 492 32 457 6.61e-101 311
Msa0377280 AT2G35780.1 38.197 466 238 11 37 492 26 451 1.00e-100 310
Msa0377280 AT3G63470.1 39.869 459 230 11 39 492 80 497 1.39e-100 311
Msa0377280 AT2G24010.3 37.551 490 239 11 41 492 2 462 3.00e-99 306
Msa0377280 AT2G05850.1 36.250 480 251 11 25 492 48 484 2.03e-98 305
Msa0377280 AT5G08260.1 37.681 483 234 11 37 493 36 477 3.75e-98 304
Msa0377280 AT4G30810.1 37.844 473 235 12 37 493 34 463 2.88e-96 300
Msa0377280 AT3G17180.1 36.157 484 236 12 39 493 37 476 5.20e-94 293
Msa0377280 AT3G52010.1 37.179 468 238 14 37 492 61 484 7.49e-93 291
Msa0377280 AT3G52000.1 36.952 479 244 15 25 492 48 479 1.18e-88 280
Msa0377280 AT5G23210.3 38.085 449 195 12 37 447 48 451 1.23e-88 279
Msa0377280 AT5G23210.5 39.141 419 199 12 113 493 1 401 1.62e-84 266
Msa0377280 AT3G52020.1 35.876 485 248 12 23 492 62 498 7.00e-84 268
Msa0377280 AT5G23210.2 38.835 412 196 12 121 494 8 401 7.82e-82 259
Msa0377280 AT3G17180.2 35.360 444 214 12 39 453 37 436 5.29e-80 256
Msa0377280 AT2G24010.4 37.467 379 200 8 41 406 2 356 2.00e-75 241
Msa0377280 AT4G12910.1 34.073 496 224 16 53 491 48 497 2.58e-71 235
Msa0377280 AT3G25420.1 34.898 490 230 17 53 491 43 494 2.01e-69 230
Msa0377280 AT5G23210.4 37.808 365 172 11 121 447 8 355 3.31e-67 220
Msa0377280 AT2G24000.2 31.435 474 203 14 37 491 27 397 8.01e-67 221
Msa0377280 AT4G12910.2 33.480 454 199 16 53 449 48 455 1.77e-59 203
Msa0377280 AT1G73300.1 29.825 456 245 14 52 491 45 441 2.27e-58 199
Msa0377280 AT1G73300.2 29.825 456 245 14 52 491 45 441 2.27e-58 199
Msa0377280 AT5G36180.1 29.060 468 256 15 41 491 33 441 1.01e-55 192
Msa0377280 AT3G10450.1 30.000 460 239 16 52 491 41 437 4.51e-55 191
Msa0377280 AT1G73280.1 29.724 471 249 17 41 491 33 441 6.15e-55 190
Msa0377280 AT2G22980.1 27.938 451 256 13 52 491 38 430 8.66e-55 189
Msa0377280 AT3G12203.3 29.847 459 250 14 47 491 16 416 1.48e-54 189
Msa0377280 AT2G22990.1 27.753 454 259 11 52 491 35 433 2.13e-54 189
Msa0377280 AT3G12203.1 29.847 459 250 14 47 491 37 437 2.44e-54 189
Msa0377280 AT3G10450.2 29.956 454 235 16 58 491 4 394 3.20e-54 187
Msa0377280 AT1G73270.2 27.789 475 253 14 41 491 33 441 8.44e-54 187
Msa0377280 AT1G73270.1 27.789 475 253 14 41 491 33 441 9.91e-54 187
Msa0377280 AT1G33540.1 28.723 470 259 16 52 491 41 464 1.78e-52 184
Msa0377280 AT2G23000.1 27.682 466 269 14 41 491 25 437 2.52e-52 183
Msa0377280 AT2G23000.2 27.682 466 269 14 41 491 25 437 2.52e-52 183
Msa0377280 AT1G73290.1 27.527 465 242 14 52 491 44 438 3.34e-52 183
Msa0377280 AT2G22920.2 28.205 468 239 15 52 491 37 435 4.36e-52 182
Msa0377280 AT1G33540.2 28.664 464 255 16 58 491 4 421 1.15e-51 181
Msa0377280 AT3G12240.1 30.217 460 238 17 52 491 40 436 2.08e-51 181
Msa0377280 AT1G73310.1 28.194 454 255 12 52 491 45 441 2.86e-51 181
Msa0377280 AT3G12230.1 29.694 458 243 17 52 491 39 435 1.56e-50 178
Msa0377280 AT2G22980.2 28.169 426 238 12 52 466 38 406 1.69e-50 177
Msa0377280 AT3G10450.4 30.115 435 222 15 52 466 41 413 1.97e-50 177
Msa0377280 AT2G22980.4 27.880 434 245 12 52 474 38 414 2.56e-50 178
Msa0377280 AT3G12203.2 29.519 437 236 14 69 491 1 379 3.07e-50 176
Msa0377280 AT3G12220.1 30.519 462 234 18 52 491 39 435 5.80e-50 177
Msa0377280 AT3G10450.3 30.070 429 218 15 58 466 4 370 1.97e-49 174
Msa0377280 AT5G22980.1 30.283 459 239 18 52 489 96 494 2.78e-49 177
Msa0377280 AT2G22970.1 27.742 465 243 14 52 491 37 433 3.60e-49 175
Msa0377280 AT2G22990.4 27.934 426 243 9 52 465 35 408 3.72e-49 174
Msa0377280 AT2G22990.3 27.869 427 244 9 52 466 35 409 4.30e-49 175
Msa0377280 AT3G12220.2 30.482 456 230 18 58 491 15 405 7.86e-49 173
Msa0377280 AT2G22990.5 26.872 454 254 12 52 491 35 424 9.36e-48 171
Msa0377280 AT3G56540.1 46.701 197 74 3 26 220 65 232 3.11e-47 165
Msa0377280 AT2G23010.1 26.681 461 257 14 52 491 37 437 7.04e-47 169
Msa0377280 AT3G45010.1 28.970 466 247 18 52 493 99 504 1.99e-46 169
Msa0377280 AT5G09640.1 27.349 479 280 18 41 491 27 465 2.63e-46 168
Msa0377280 AT2G23010.2 26.464 461 258 14 52 491 37 437 2.75e-46 167
Msa0377280 AT3G10410.1 30.482 456 234 20 54 487 99 493 3.13e-46 169
Msa0377280 AT2G22970.4 27.727 440 226 13 52 466 37 409 2.99e-44 161
Msa0377280 AT2G22970.3 27.790 439 225 13 52 465 37 408 1.05e-43 160
Msa0377280 AT1G73310.2 28.058 417 230 11 52 454 45 405 4.00e-43 158
Msa0377280 AT5G36180.5 29.412 357 213 11 144 491 13 339 1.69e-42 154
Msa0377280 AT5G36180.3 29.412 357 213 11 144 491 13 339 1.69e-42 154
Msa0377280 AT1G73290.3 27.644 416 223 13 52 450 44 398 3.41e-42 155
Msa0377280 AT2G22920.1 28.806 427 208 15 52 450 37 395 7.22e-42 154
Msa0377280 AT1G73280.4 29.722 360 208 13 144 491 13 339 8.64e-42 152
Msa0377280 AT2G22990.6 27.246 345 218 8 154 491 1 319 1.13e-38 143
Msa0377280 AT2G22990.2 26.957 345 219 8 154 491 1 319 4.53e-38 142
Msa0377280 AT5G36180.2 29.429 333 197 10 143 466 12 315 6.44e-38 141
Msa0377280 AT1G73280.3 29.395 347 200 13 157 491 1 314 1.15e-37 140
Msa0377280 AT1G73290.2 33.333 240 114 6 52 277 44 251 2.08e-37 140
Msa0377280 AT1G73280.2 29.248 359 183 12 41 381 33 338 2.61e-36 138
Msa0377280 AT2G22980.3 29.042 334 178 10 52 375 38 322 8.22e-36 136
Msa0377280 AT2G22980.5 27.760 317 197 9 154 466 1 289 3.76e-34 130
Msa0377280 AT2G22920.4 32.773 238 118 5 52 277 37 244 2.40e-33 129
Msa0377280 AT3G12220.3 34.400 250 117 8 52 284 39 258 2.40e-33 130
Msa0377280 AT3G12220.3 31.250 144 86 6 351 491 250 383 6.11e-11 64.7
Msa0377280 AT5G36180.4 29.206 315 185 10 144 449 13 298 5.92e-32 125
Msa0377280 AT1G73310.3 28.213 319 195 8 143 454 12 303 4.66e-31 122
Msa0377280 AT2G22970.2 32.500 240 115 7 52 277 37 243 1.11e-30 121
Msa0377280 AT1G15000.1 24.086 465 271 16 45 491 26 426 2.43e-22 99.8
Msa0377280 AT2G22920.3 26.280 293 156 11 220 491 3 256 2.15e-21 94.0
Msa0377280 AT5G22960.1 29.310 174 75 4 54 227 34 159 1.12e-16 78.6
Msa0377280 AT2G22960.1 28.369 141 94 3 351 491 51 184 1.14e-15 75.5

Find 101 sgRNAs with CRISPR-Local

Find 575 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGTAGTGCTTTGGTTAAA+TGG 0.193819 3_1:-77684362 Msa0377280:CDS
TGTTGGTGGTTGTTTGTTAA+TGG 0.210673 3_1:-77684012 Msa0377280:CDS
TATCTTATCAACTTCTAAAA+AGG 0.217716 3_1:+77684511 None:intergenic
CTTGAGATTGAAGTTGCTTT+TGG 0.218956 3_1:+77682668 None:intergenic
AAGAGAAGAAGAAGAAATTT+TGG 0.227958 3_1:-77689158 Msa0377280:CDS
GATTCCAACCATATCTATTC+TGG 0.242541 3_1:-77680328 Msa0377280:CDS
GGTACACGGTCTTTAGTAAA+TGG 0.249224 3_1:-77680144 Msa0377280:CDS
TCCTATAGAACTTGGTTTAA+TGG 0.256672 3_1:-77680087 Msa0377280:CDS
GTGTAAGAGTTCTTGTATTC+AGG 0.263545 3_1:-77680287 Msa0377280:intron
GATCTCCCTGGTTGTGAAAA+TGG 0.279595 3_1:+77679387 None:intergenic
TATTGTTGAAATCCTACTTT+TGG 0.317444 3_1:+77684470 None:intergenic
CTCATGAGCTGCTCCTCTTA+TGG 0.337801 3_1:+77679413 None:intergenic
CCGTTTGCGCAAGAGTAAAT+AGG 0.338463 3_1:-77682118 Msa0377280:CDS
TGTGTTCAAACCGAAGTCTT+TGG 0.343323 3_1:+77680116 None:intergenic
CCAAATGATATACAAGGATT+TGG 0.351890 3_1:-77689129 Msa0377280:intron
AAACATTCACATATTTGAAT+AGG 0.352371 3_1:-77681694 Msa0377280:CDS
GGTTGTTCTTCTGTTGGAGC+TGG 0.354742 3_1:-77683740 Msa0377280:CDS
GCAGATAGGGAATCCTCTTC+TGG 0.355694 3_1:-77682279 Msa0377280:intron
CCAAATCCTTGTATATCATT+TGG 0.369230 3_1:+77689129 None:intergenic
TTCATATATCAAAGAATAGT+TGG 0.370578 3_1:+77679324 None:intergenic
GCTCTTCATGCTAAGCTTGT+AGG 0.375959 3_1:-77681656 Msa0377280:CDS
TTATCCTTTGCAACCATAAG+AGG 0.383989 3_1:-77679426 Msa0377280:CDS
CCATTTAACCAAAGCACTAC+TGG 0.385709 3_1:+77684362 None:intergenic
GCTGGATGGACACAAGTATA+TGG 0.392487 3_1:-77679456 Msa0377280:CDS
AACAATGAGTTGTGCAAGTT+GGG 0.394486 3_1:+77682695 None:intergenic
TTCTTCTTCTTCTCTTCCAT+TGG 0.410433 3_1:+77689165 None:intergenic
CTTCCAAGCCAGTAGTGCTT+TGG 0.414675 3_1:-77684370 Msa0377280:CDS
TCTTCTTCTCTTCCATTGGA+AGG 0.419459 3_1:+77689169 None:intergenic
TCCATTAAACCAAGTTCTAT+AGG 0.420844 3_1:+77680086 None:intergenic
CCTATTTACTCTTGCGCAAA+CGG 0.423561 3_1:+77682118 None:intergenic
AACAATGAGTTCTTTATCAC+AGG 0.423884 3_1:-77682818 Msa0377280:CDS
GGCGGTGATGTTGGTGTTGG+TGG 0.424139 3_1:-77684026 Msa0377280:CDS
AGTAAATAGGCTAGTGTCAA+TGG 0.433325 3_1:-77682105 Msa0377280:CDS
GGGCCTGGTTGTTCTTCTGT+TGG 0.435564 3_1:-77683746 Msa0377280:CDS
AGCATATGTGCTAACTCAAC+TGG 0.443526 3_1:-77681841 Msa0377280:intron
CTGGGAAAACTTGTTAAGTC+AGG 0.444625 3_1:-77680309 Msa0377280:CDS
TTGGTTGAAAATATGAAGAT+TGG 0.447768 3_1:-77689210 None:intergenic
CAACAGAGTCCTATAGAACT+TGG 0.450027 3_1:-77680095 Msa0377280:CDS
ATGGTATTGAAGGTAGGTCT+TGG 0.451454 3_1:-77683993 Msa0377280:intron
ACTCTAGAGCTGAGTATCTC+TGG 0.456915 3_1:-77682238 Msa0377280:CDS
CTCTTCATGCTAAGCTTGTA+GGG 0.458817 3_1:-77681655 Msa0377280:CDS
TTCACAACCAGGGAGATCAT+TGG 0.460300 3_1:-77679382 Msa0377280:CDS
ACCTGTCAAATCATCGTTCA+CGG 0.467446 3_1:+77683465 None:intergenic
TAACCAAAGCACTACTGGCT+TGG 0.472081 3_1:+77684367 None:intergenic
TTGTTAATGGTATTGAAGGT+AGG 0.473061 3_1:-77683999 Msa0377280:CDS
GACAACTCTAGGAAGTCAAC+AGG 0.473393 3_1:+77679103 None:intergenic
ATCACAGGGGAGAGCTATGC+AGG 0.475351 3_1:-77682803 Msa0377280:intron
GAGATCATTGGTGCTGCTAA+AGG 0.480114 3_1:-77679370 Msa0377280:CDS
GATTCAGTATTACCGTTGCT+TGG 0.480726 3_1:-77680165 Msa0377280:CDS
TCTAGGAAGTCAACAGGTAA+AGG 0.481012 3_1:+77679109 None:intergenic
AGCACTACTGGCTTGGAAGC+TGG 0.484486 3_1:+77684374 None:intergenic
TTCCTAGAGTTGTCAAACCT+TGG 0.487319 3_1:-77679094 Msa0377280:three_prime_UTR
TTTAATTTAGGCGGTGATGT+TGG 0.487548 3_1:-77684035 Msa0377280:CDS
ATTGAAAATGTTATAGCTGC+TGG 0.493657 3_1:+77679036 None:intergenic
GCTGAGTATCTCTGGTCTCA+TGG 0.494343 3_1:-77682230 Msa0377280:CDS
AAACTGTAGTGTATTCAGTC+TGG 0.496440 3_1:-77679287 Msa0377280:three_prime_UTR
AGAGAAGATAGATGTTTGTG+TGG 0.498648 3_1:-77681723 Msa0377280:CDS
AACTTGGTTTAATGGAAGAC+AGG 0.500267 3_1:-77680079 Msa0377280:intron
TTGGAATCACCTGCTGGTGT+TGG 0.505453 3_1:-77683523 Msa0377280:CDS
ATTCCAACCATATCTATTCT+GGG 0.506746 3_1:-77680327 Msa0377280:CDS
TTGTTTGTTAATGGTATTGA+AGG 0.506851 3_1:-77684003 Msa0377280:CDS
GAATGATTCATTAGTAGAGT+AGG 0.511936 3_1:+77683495 None:intergenic
GTAGGATTTCAACAATATGC+AGG 0.513699 3_1:-77684464 Msa0377280:CDS
CAAAAGCAACTTCAATCTCA+AGG 0.516615 3_1:-77682667 Msa0377280:CDS
AGTGGCAAACATGCTGTACT+TGG 0.523894 3_1:-77683542 Msa0377280:CDS
TTTCCCAGAATAGATATGGT+TGG 0.524165 3_1:+77680324 None:intergenic
TTAGGCGGTGATGTTGGTGT+TGG 0.527185 3_1:-77684029 Msa0377280:CDS
AGCAGCACCAATGATCTCCC+TGG 0.527781 3_1:+77679375 None:intergenic
TTACCTCAGCAGCCAAAAGT+AGG 0.529670 3_1:-77684482 Msa0377280:CDS
TTCCAAGGTTTGACAACTCT+AGG 0.535222 3_1:+77679092 None:intergenic
TAGGAGAAACCAACACCAGC+AGG 0.535980 3_1:+77683514 None:intergenic
TCCGTGAACGATGATTTGAC+AGG 0.542755 3_1:-77683466 Msa0377280:intron
TGCTCCTCTTATGGTTGCAA+AGG 0.542852 3_1:+77679422 None:intergenic
GAACAATGAGTTGTGCAAGT+TGG 0.548381 3_1:+77682694 None:intergenic
AGACATTTCTGAATATTCCA+AGG 0.548917 3_1:+77679077 None:intergenic
AGATGCTGCAGAAAATATGC+AGG 0.549748 3_1:+77679173 None:intergenic
CTGTACTTGGAATCACCTGC+TGG 0.558525 3_1:-77683529 Msa0377280:CDS
AATGATTACAGTTGGAACAA+AGG 0.561761 3_1:-77683665 Msa0377280:intron
ACAATTCTTCAACCTTCCAA+TGG 0.563434 3_1:-77689181 Msa0377280:CDS
AATGGATTAGCCAAAGACTT+CGG 0.570823 3_1:-77680126 Msa0377280:CDS
CAAACACCAAATGATATACA+AGG 0.575816 3_1:-77689135 Msa0377280:CDS
ACAATGAGTTCTTTATCACA+GGG 0.576910 3_1:-77682817 Msa0377280:CDS
ACCACATGGACCACTTGTAG+TGG 0.577155 3_1:-77681629 Msa0377280:CDS
TATTACCGTTGCTTGGTACA+CGG 0.578535 3_1:-77680158 Msa0377280:CDS
TCATGTCTGGTTTAGCAAGA+GGG 0.582810 3_1:-77681746 Msa0377280:intron
TAAAACTTACCCACTACAAG+TGG 0.584898 3_1:+77681619 None:intergenic
CATAAGAGGAGCAGCTCATG+AGG 0.586244 3_1:-77679412 Msa0377280:CDS
AAAAGCAACTTCAATCTCAA+GGG 0.591189 3_1:-77682666 Msa0377280:CDS
TCTGTGTTGAATTCCAGAAG+AGG 0.596221 3_1:+77682266 None:intergenic
ATGGAGTTGGCATTTCCTAG+TGG 0.600694 3_1:+77679262 None:intergenic
ATTAGAAGACAATATGCAAG+TGG 0.621696 3_1:-77682152 Msa0377280:CDS
AGCTTGTAGGGATCACCACA+TGG 0.629981 3_1:-77681643 Msa0377280:CDS
GTATTCAGTCTGGAACCACT+AGG 0.633895 3_1:-77679277 Msa0377280:three_prime_UTR
CCACATGGACCACTTGTAGT+GGG 0.641254 3_1:-77681628 Msa0377280:intron
GCTCCAACAGAAGAACAACC+AGG 0.659750 3_1:+77683743 None:intergenic
CCCACTACAAGTGGTCCATG+TGG 0.665874 3_1:+77681628 None:intergenic
GTAGTGCTTTGGTTAAATGG+AGG 0.666465 3_1:-77684359 Msa0377280:intron
AAAGACCGTGTACCAAGCAA+CGG 0.670704 3_1:+77680153 None:intergenic
ACAATGAGTTGTGCAAGTTG+GGG 0.679051 3_1:+77682696 None:intergenic
AAATAGGCTAGTGTCAATGG+AGG 0.690398 3_1:-77682102 Msa0377280:intron
CAATGAGTTCTTTATCACAG+GGG 0.717844 3_1:-77682816 Msa0377280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+GGG + chr3_1:77681717-77681736 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr3_1:77681718-77681737 None:intergenic 0.0%
!!! TATATAAATTTTTAAGTTTG+GGG - chr3_1:77679369-77679388 Msa0377280:CDS 10.0%
!! TTAAATACTTACTATTTAAA+GGG + chr3_1:77680545-77680564 None:intergenic 10.0%
!! ATTAAATACTTACTATTTAA+AGG + chr3_1:77680546-77680565 None:intergenic 10.0%
!! AAAAGAATAATTACTAAATT+TGG - chr3_1:77680614-77680633 Msa0377280:intron 10.0%
!! AAAGAATAATTACTAAATTT+GGG - chr3_1:77680615-77680634 Msa0377280:intron 10.0%
!! TTTAAATATCATTACTTTAA+GGG + chr3_1:77680679-77680698 None:intergenic 10.0%
!! ATTTAAATATCATTACTTTA+AGG + chr3_1:77680680-77680699 None:intergenic 10.0%
!! TAATGATATTTAAATAACTA+TGG - chr3_1:77680685-77680704 Msa0377280:intron 10.0%
!! TAAAATTTCACATAAAATAT+TGG - chr3_1:77681139-77681158 Msa0377280:intron 10.0%
!! AAAATTTCACATAAAATATT+GGG - chr3_1:77681140-77681159 Msa0377280:intron 10.0%
!!! TATATGTTTTTCAATAAATA+AGG - chr3_1:77681165-77681184 Msa0377280:intron 10.0%
!!! TTTCTTATTTTTTTATACTA+AGG - chr3_1:77681311-77681330 Msa0377280:intron 10.0%
!!! TTCATTTTAATAGTAATTAA+TGG + chr3_1:77681427-77681446 None:intergenic 10.0%
!! ATTAATTACTATTAAAATGA+AGG - chr3_1:77681426-77681445 Msa0377280:intron 10.0%
!! TTAATTACTATTAAAATGAA+GGG - chr3_1:77681427-77681446 Msa0377280:intron 10.0%
!! ACTAATAATTTACAATTAAT+AGG - chr3_1:77681832-77681851 Msa0377280:intron 10.0%
!!! ATTTGCTTTTTTTTTTTTAA+CGG + chr3_1:77684390-77684409 None:intergenic 10.0%
!! TAACAAAAATTAATTATGAA+TGG + chr3_1:77685019-77685038 None:intergenic 10.0%
!!! TTCATAATTAATTTTTGTTA+CGG - chr3_1:77685019-77685038 Msa0377280:intron 10.0%
!!! TGCAATTTTAATTTATTTAT+AGG + chr3_1:77685662-77685681 None:intergenic 10.0%
!!! TTTTTTTAAAAAAAAGAAGT+TGG - chr3_1:77686157-77686176 Msa0377280:intron 10.0%
!!! TTTTTTAAAAAAAAGAAGTT+GGG - chr3_1:77686158-77686177 Msa0377280:intron 10.0%
!!! TAAATCATACTAATTTTTTA+AGG - chr3_1:77686741-77686760 Msa0377280:intron 10.0%
!! AAATTTAACAATGTAAATAA+AGG + chr3_1:77687624-77687643 None:intergenic 10.0%
!! TTTACATTGTTAAATTTATT+CGG - chr3_1:77687627-77687646 Msa0377280:intron 10.0%
!!! GATTAAATTTTTTTTTTTCA+AGG - chr3_1:77687748-77687767 Msa0377280:intron 10.0%
!! GATAAAAAAAATTAAGTTAT+TGG - chr3_1:77688367-77688386 Msa0377280:intron 10.0%
!! AAAAAAAAAGTTTAAATGAA+TGG - chr3_1:77688402-77688421 Msa0377280:intron 10.0%
!! CATAAAATATTACTATTTAA+AGG - chr3_1:77688579-77688598 Msa0377280:intron 10.0%
!! AAAAACTGAATATTTAAATA+TGG + chr3_1:77688642-77688661 None:intergenic 10.0%
!!! TTAAATATTCAGTTTTTTAT+TGG - chr3_1:77688645-77688664 Msa0377280:intron 10.0%
!! ACATCAATAATGTTTAATTA+AGG + chr3_1:77679264-77679283 None:intergenic 15.0%
!! TAATTAAACATTATTGATGT+TGG - chr3_1:77679264-77679283 Msa0377280:three_prime_UTR 15.0%
!!! ATATAAATTTTTAAGTTTGG+GGG - chr3_1:77679370-77679389 Msa0377280:CDS 15.0%
!!! GTAATTTTTTTTGAGTAAAT+AGG + chr3_1:77679564-77679583 None:intergenic 15.0%
!!! AATTCTACCTTTTTTATTTA+AGG - chr3_1:77679665-77679684 Msa0377280:intron 15.0%
!! AAATCTTCCTTAAATAAAAA+AGG + chr3_1:77679675-77679694 None:intergenic 15.0%
!! AGAAATTAAAAAATACATTC+AGG + chr3_1:77679705-77679724 None:intergenic 15.0%
!! AATTAATTATTTACCTTCAA+TGG - chr3_1:77679818-77679837 Msa0377280:intron 15.0%
!!! AATTACCTAATTTTTATTCA+AGG + chr3_1:77679926-77679945 None:intergenic 15.0%
!! TTATAAATAGACAAATCATA+GGG + chr3_1:77680205-77680224 None:intergenic 15.0%
!! ATTATAAATAGACAAATCAT+AGG + chr3_1:77680206-77680225 None:intergenic 15.0%
!! TCATACCTTAAATAAAAATT+GGG + chr3_1:77680231-77680250 None:intergenic 15.0%
!! TTCATACCTTAAATAAAAAT+TGG + chr3_1:77680232-77680251 None:intergenic 15.0%
!!! TATGTGAAATTTTAAAGTAT+GGG + chr3_1:77681133-77681152 None:intergenic 15.0%
!!! TTATGTGAAATTTTAAAGTA+TGG + chr3_1:77681134-77681153 None:intergenic 15.0%
!!! TTTACGATTATAATTTTGTA+AGG + chr3_1:77681269-77681288 None:intergenic 15.0%
!! TAAGAAAAAACATTATACTT+CGG + chr3_1:77681298-77681317 None:intergenic 15.0%
!!! TATTTTTTTATACTAAGGAT+CGG - chr3_1:77681316-77681335 Msa0377280:intron 15.0%
!! AGATGATTTAATAATCAATT+AGG + chr3_1:77681596-77681615 None:intergenic 15.0%
!! AATAAAGAATGTAAACTATT+AGG - chr3_1:77682784-77682803 Msa0377280:intron 15.0%
!!! TAAGCAAAAATTTACTTTTT+AGG - chr3_1:77682968-77682987 Msa0377280:intron 15.0%
!! CATTGAATACATAATTTATT+TGG + chr3_1:77683259-77683278 None:intergenic 15.0%
!!! ATAATATTTTTTGTTACTGT+AGG - chr3_1:77683674-77683693 Msa0377280:CDS 15.0%
!!! GCAAATTTTATTAAAAAACT+CGG + chr3_1:77684368-77684387 None:intergenic 15.0%
!! GTTAAAAAAAAAAAAGCAAA+TGG - chr3_1:77684389-77684408 Msa0377280:CDS 15.0%
!! TTATTAAAAATGATTACAGT+TGG - chr3_1:77684543-77684562 Msa0377280:intron 15.0%
!!! CTTATTTTTCATTTCATTTT+TGG - chr3_1:77684867-77684886 Msa0377280:intron 15.0%
!!! ATTGATTACAAATGATTTTT+AGG - chr3_1:77684955-77684974 Msa0377280:intron 15.0%
!!! TATTTTGTTATGTTCTAATT+TGG - chr3_1:77685082-77685101 Msa0377280:intron 15.0%
!!! TATTAGTTCTATTTAATCTT+AGG + chr3_1:77685142-77685161 None:intergenic 15.0%
!! ATAAAGATGATATCTTAATA+TGG + chr3_1:77685291-77685310 None:intergenic 15.0%
!!! AATGAATAGTATTTTCATTT+TGG - chr3_1:77685454-77685473 Msa0377280:intron 15.0%
!!! TTATAGAATAAGAAACATTT+TGG - chr3_1:77685875-77685894 Msa0377280:intron 15.0%
!!! ATTATTTTATGGAAATGAAT+GGG - chr3_1:77686651-77686670 Msa0377280:intron 15.0%
!! ACTTTATGAATAAATTATTG+AGG - chr3_1:77687242-77687261 Msa0377280:intron 15.0%
!! CTTTATGAATAAATTATTGA+GGG - chr3_1:77687243-77687262 Msa0377280:intron 15.0%
!! TTCTGATTATTAGATAAATA+CGG - chr3_1:77687384-77687403 Msa0377280:intron 15.0%
!!! ACTATTCTATTTAATTTTGA+AGG + chr3_1:77687593-77687612 None:intergenic 15.0%
!! AAAAATTTAATCAACAAAGA+GGG + chr3_1:77687740-77687759 None:intergenic 15.0%
!! AAAAAATTTAATCAACAAAG+AGG + chr3_1:77687741-77687760 None:intergenic 15.0%
!! AATATGTGTAATTAATGTAT+TGG + chr3_1:77688557-77688576 None:intergenic 15.0%
!! AATCAAATATCAAAATAAGT+TGG + chr3_1:77688731-77688750 None:intergenic 15.0%
!!! ATTTTGATATTTGATTTTTC+AGG - chr3_1:77688735-77688754 Msa0377280:intron 15.0%
!!! ATTGTTGTTAGATACTTAAA+TGG + chr3_1:77679225-77679244 None:intergenic 20.0%
!!! TATAAATTTTTAAGTTTGGG+GGG - chr3_1:77679371-77679390 Msa0377280:CDS 20.0%
!!! GTATACTGTAATTATTTTGT+TGG - chr3_1:77679604-77679623 Msa0377280:intron 20.0%
!!! CTGTAATTGTTCTAAATTTT+TGG - chr3_1:77679631-77679650 Msa0377280:intron 20.0%
!!! TTCTTTTTTCAACTACAATA+GGG + chr3_1:77680011-77680030 None:intergenic 20.0%
!!! ATTCTTTTTTCAACTACAAT+AGG + chr3_1:77680012-77680031 None:intergenic 20.0%
!!! AATTGCCCAATTTTTATTTA+AGG - chr3_1:77680223-77680242 Msa0377280:intron 20.0%
!!! AGATAAATGGATAATTTTGA+AGG - chr3_1:77680309-77680328 Msa0377280:CDS 20.0%
!! AGTAAGTATTTAATGAAAAG+TGG - chr3_1:77680552-77680571 Msa0377280:intron 20.0%
!! AATTAAAAAGTAGAACAACA+AGG + chr3_1:77680728-77680747 None:intergenic 20.0%
!!! TTGTTGTTCTACTTTTTAAT+TGG - chr3_1:77680727-77680746 Msa0377280:intron 20.0%
!! TTTAATTGGTCAAAAACAAT+AGG - chr3_1:77680741-77680760 Msa0377280:intron 20.0%
!! TTAATTGGTCAAAAACAATA+GGG - chr3_1:77680742-77680761 Msa0377280:intron 20.0%
!! TATTTAATGAAGACATATCT+AGG - chr3_1:77680864-77680883 Msa0377280:intron 20.0%
!!! AATTTTTTCAGAGAAATGTT+TGG - chr3_1:77681057-77681076 Msa0377280:intron 20.0%
!! TTAGATTAAAACTAAATGGA+GGG + chr3_1:77681569-77681588 None:intergenic 20.0%
!! ATGGTTAGATTAAAACTAAA+TGG + chr3_1:77681573-77681592 None:intergenic 20.0%
!! GATTTAATAATCAATTAGGA+TGG + chr3_1:77681592-77681611 None:intergenic 20.0%
!!! TAAATCTTTTGAGTTACTTT+TGG - chr3_1:77681676-77681695 Msa0377280:CDS 20.0%
!!! AACTGTAATTTTCTTATATG+TGG - chr3_1:77682040-77682059 Msa0377280:intron 20.0%
!! AACTACACAATCTTATTATT+GGG + chr3_1:77682141-77682160 None:intergenic 20.0%
!! AAACTACACAATCTTATTAT+TGG + chr3_1:77682142-77682161 None:intergenic 20.0%
!! TTATTTGTGTCAAACAAATT+AGG + chr3_1:77682250-77682269 None:intergenic 20.0%
!! TGATGGAAAATAAAGTTAAA+AGG - chr3_1:77682726-77682745 Msa0377280:intron 20.0%
!! ATAAACTATTAGAAAATTCG+TGG - chr3_1:77682874-77682893 Msa0377280:CDS 20.0%
!!! TTTTAGGTTCATTCAATAAA+TGG + chr3_1:77682984-77683003 None:intergenic 20.0%
!!! TAAGCAAAAATTCACTTTTT+AGG + chr3_1:77683057-77683076 None:intergenic 20.0%
!! CATTCAATACTTAATGTATT+TGG - chr3_1:77683220-77683239 Msa0377280:intron 20.0%
!! GAAGAAGGAATATATAATAA+AGG + chr3_1:77683534-77683553 None:intergenic 20.0%
!!! TATCTTATCAACTTCTAAAA+AGG + chr3_1:77683708-77683727 None:intergenic 20.0%
!! ACACGTTTAATCTATATTAT+AGG - chr3_1:77684037-77684056 Msa0377280:CDS 20.0%
!!! TTAATAAGACCATTTTTAGT+TGG + chr3_1:77684530-77684549 None:intergenic 20.0%
!! AATGCAAAATTGATTACAAA+GGG - chr3_1:77684892-77684911 Msa0377280:intron 20.0%
!!! TAATTATGAATGGATTGATT+TGG + chr3_1:77685009-77685028 None:intergenic 20.0%
!! AAATAAACTTAGTGTATGTT+TGG + chr3_1:77685050-77685069 None:intergenic 20.0%
!!! AACATACACTAAGTTTATTT+TGG - chr3_1:77685050-77685069 Msa0377280:intron 20.0%
!!! ACATACACTAAGTTTATTTT+GGG - chr3_1:77685051-77685070 Msa0377280:intron 20.0%
!!! TAAACCAAACTAGATTTTAA+AGG - chr3_1:77685206-77685225 Msa0377280:intron 20.0%
!!! TTTTCCTTTAAAATCTAGTT+TGG + chr3_1:77685213-77685232 None:intergenic 20.0%
!!! ATCTTGTTTTTTTACAACAT+TGG - chr3_1:77685351-77685370 Msa0377280:intron 20.0%
!! ATATCAACAAAGTAATAAGT+CGG + chr3_1:77685916-77685935 None:intergenic 20.0%
!!! TTATTATATAGTTCGTTTTG+AGG - chr3_1:77686218-77686237 Msa0377280:intron 20.0%
!!! TATTATATAGTTCGTTTTGA+GGG - chr3_1:77686219-77686238 Msa0377280:intron 20.0%
!! AAACATTCACATATTTGAAT+AGG - chr3_1:77686522-77686541 Msa0377280:intron 20.0%
!! TTATGATTCTTAAAATCACT+TGG - chr3_1:77686627-77686646 Msa0377280:intron 20.0%
!! TATGATTCTTAAAATCACTT+GGG - chr3_1:77686628-77686647 Msa0377280:intron 20.0%
!!! GATTATTTTATGGAAATGAA+TGG - chr3_1:77686650-77686669 Msa0377280:intron 20.0%
!! CTTGAAATCAAAGAATAATT+TGG + chr3_1:77686843-77686862 None:intergenic 20.0%
!!! CAAATTATTCTTTGATTTCA+AGG - chr3_1:77686841-77686860 Msa0377280:intron 20.0%
!!! TTTTGTTTCTAGATTTCTAT+CGG + chr3_1:77687108-77687127 None:intergenic 20.0%
!! AAATCTAGAAACAAAAAATG+CGG - chr3_1:77687112-77687131 Msa0377280:intron 20.0%
!! ATTAATTACTAGAATATCAG+CGG + chr3_1:77687295-77687314 None:intergenic 20.0%
!! TCTAGTAATTAATCTTCATT+AGG - chr3_1:77687302-77687321 Msa0377280:intron 20.0%
!! CTAGTAATTAATCTTCATTA+GGG - chr3_1:77687303-77687322 Msa0377280:intron 20.0%
!! TCAGAAAAAGAAAATTTGAA+AGG + chr3_1:77687370-77687389 None:intergenic 20.0%
!! ATTTCATCAGTAACATTATT+TGG - chr3_1:77687556-77687575 Msa0377280:intron 20.0%
!! TTTCATCAGTAACATTATTT+GGG - chr3_1:77687557-77687576 Msa0377280:intron 20.0%
!!! TTTTTTTTGAAGAGACAATA+TGG - chr3_1:77687682-77687701 Msa0377280:intron 20.0%
!! TAATTGAAATGAGTTAAGTT+TGG - chr3_1:77687782-77687801 Msa0377280:intron 20.0%
!! TAACTAATATGTATCAATGT+CGG - chr3_1:77688191-77688210 Msa0377280:intron 20.0%
!!! TCAAAATAAGTTGGTTTTAA+AGG + chr3_1:77688722-77688741 None:intergenic 20.0%
!! TTCATATATCAAAGAATAGT+TGG + chr3_1:77688895-77688914 None:intergenic 20.0%
!! AAGAGAAGAAGAAGAAATTT+TGG - chr3_1:77679058-77679077 Msa0377280:three_prime_UTR 25.0%
!!! TTTTGTTGTTTCATTGATGT+TGG - chr3_1:77679302-77679321 Msa0377280:three_prime_UTR 25.0%
! AACGTCAACAAAAAATTTGA+CGG - chr3_1:77679435-77679454 Msa0377280:CDS 25.0%
! TCCTACCTTGAATAAAAATT+AGG - chr3_1:77679918-77679937 Msa0377280:intron 25.0%
!! ACCTAATTTTTATTCAAGGT+AGG + chr3_1:77679922-77679941 None:intergenic 25.0%
!!! TACTCAATATTGTTTTGTTC+CGG - chr3_1:77680067-77680086 Msa0377280:intron 25.0%
! AATTATTCCTACTCAAAGAA+AGG - chr3_1:77680091-77680110 Msa0377280:CDS 25.0%
! AAATTATCCATTTATCTCCA+AGG + chr3_1:77680306-77680325 None:intergenic 25.0%
!!! TAAGTTTTTAGACTTACTCT+TGG - chr3_1:77681463-77681482 Msa0377280:intron 25.0%
! GTTAGATTAAAACTAAATGG+AGG + chr3_1:77681570-77681589 None:intergenic 25.0%
! ATGATTAACAAAATCATGTG+CGG + chr3_1:77681801-77681820 None:intergenic 25.0%
!! ATACGACATTTTACAAAAAG+AGG - chr3_1:77681977-77681996 Msa0377280:intron 25.0%
! TAATAAGATTGTGTAGTTTG+TGG - chr3_1:77682143-77682162 Msa0377280:CDS 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr3_1:77682474-77682493 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr3_1:77682487-77682506 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr3_1:77682486-77682505 Msa0377280:intron 25.0%
! CACTTATAGTTAAAAGATGA+TGG - chr3_1:77682709-77682728 Msa0377280:CDS 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr3_1:77683067-77683086 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr3_1:77682993-77683012 Msa0377280:intron 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr3_1:77683067-77683086 Msa0377280:intron 25.0%
! TTTATCTCACTAAGTGATAT+CGG + chr3_1:77683123-77683142 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr3_1:77683294-77683313 Msa0377280:intron 25.0%
! ATTTAATTATATACTCCCTC+CGG + chr3_1:77683316-77683335 None:intergenic 25.0%
!!! GAGTTTTATTTTTATCTTGC+AGG + chr3_1:77683396-77683415 None:intergenic 25.0%
! CACACATAGTATTATACTAT+AGG - chr3_1:77683483-77683502 Msa0377280:CDS 25.0%
! TGAAGGTTATTTAATGAAGA+AGG + chr3_1:77683549-77683568 None:intergenic 25.0%
!! TATTGTTGAAATCCTACTTT+TGG + chr3_1:77683749-77683768 None:intergenic 25.0%
! ATATAGATTAAACGTGTATC+TGG + chr3_1:77684034-77684053 None:intergenic 25.0%
!! TATATTATAGGTGCTACATT+TGG - chr3_1:77684049-77684068 Msa0377280:CDS 25.0%
!! TTGTTTGTTAATGGTATTGA+AGG - chr3_1:77684213-77684232 Msa0377280:intron 25.0%
!! GGTTAAAGTTTTTATGTTCT+AGG - chr3_1:77684410-77684429 Msa0377280:CDS 25.0%
!!! TAAGATGTTTTGTGTTTTGA+AGG - chr3_1:77684449-77684468 Msa0377280:CDS 25.0%
!!! AAGATGTTTTGTGTTTTGAA+GGG - chr3_1:77684450-77684469 Msa0377280:CDS 25.0%
! TAGAGTAATTAAGCACAAAA+GGG + chr3_1:77684627-77684646 None:intergenic 25.0%
! TTAGAGTAATTAAGCACAAA+AGG + chr3_1:77684628-77684647 None:intergenic 25.0%
! GAATGCAAAATTGATTACAA+AGG - chr3_1:77684891-77684910 Msa0377280:intron 25.0%
! ATGCAAAATTGATTACAAAG+GGG - chr3_1:77684893-77684912 Msa0377280:intron 25.0%
!!! CATACACTAAGTTTATTTTG+GGG - chr3_1:77685052-77685071 Msa0377280:intron 25.0%
!! TATTGAGTAAACAAGCATTT+TGG - chr3_1:77685607-77685626 Msa0377280:intron 25.0%
! ACAAATAAAATACACAAGCA+GGG + chr3_1:77685692-77685711 None:intergenic 25.0%
!!! TATTTTTGTGAAGGAATCAT+AGG + chr3_1:77686029-77686048 None:intergenic 25.0%
!!! AAAGTTGCATATTTTTGTGA+AGG + chr3_1:77686038-77686057 None:intergenic 25.0%
! TTAAAAAAAAGAAGTTGGGA+AGG - chr3_1:77686162-77686181 Msa0377280:intron 25.0%
!!! ATTATATAGTTCGTTTTGAG+GGG - chr3_1:77686220-77686239 Msa0377280:intron 25.0%
!! GTTTAGTTTAATAGCTTCAA+TGG + chr3_1:77686259-77686278 None:intergenic 25.0%
! AAAGAGAATCTAGATTGAAA+AGG + chr3_1:77686419-77686438 None:intergenic 25.0%
!!! AATCACTTGGGATTATTTTA+TGG - chr3_1:77686640-77686659 Msa0377280:intron 25.0%
!!! TAACCTATCTTTTGGTTTAT+CGG + chr3_1:77686892-77686911 None:intergenic 25.0%
! GAATAACAATCTAAGCAAAA+AGG - chr3_1:77687059-77687078 Msa0377280:intron 25.0%
!!! TTTGTTTCTAGATTTCTATC+GGG + chr3_1:77687107-77687126 None:intergenic 25.0%
! ATAAATTATTGAGGGAAACT+TGG - chr3_1:77687251-77687270 Msa0377280:intron 25.0%
! TAAATTATTGAGGGAAACTT+GGG - chr3_1:77687252-77687271 Msa0377280:intron 25.0%
! TATAATTCCTTCTGTAAGTT+CGG - chr3_1:77687459-77687478 Msa0377280:intron 25.0%
!! AAGTTCTTTTCTAGATGAAA+GGG + chr3_1:77688456-77688475 None:intergenic 25.0%
! AAAATCCTTAAAGAATGTCT+CGG + chr3_1:77688492-77688511 None:intergenic 25.0%
!!! AAAGGTATTAATGAGTGTTT+CGG - chr3_1:77688597-77688616 Msa0377280:intron 25.0%
!! TCAAAGTTATCTTTTGTCTA+TGG + chr3_1:77688976-77688995 None:intergenic 25.0%
CAAACACCAAATGATATACA+AGG - chr3_1:77679081-77679100 Msa0377280:three_prime_UTR 30.0%
CCAAATCCTTGTATATCATT+TGG + chr3_1:77679090-77679109 None:intergenic 30.0%
CCAAATGATATACAAGGATT+TGG - chr3_1:77679087-77679106 Msa0377280:three_prime_UTR 30.0%
TGATGAACAAAAGCTAGAAT+AGG - chr3_1:77679128-77679147 Msa0377280:three_prime_UTR 30.0%
GTTAGATACTTAAATGGTGT+GGG + chr3_1:77679219-77679238 None:intergenic 30.0%
TGTTAGATACTTAAATGGTG+TGG + chr3_1:77679220-77679239 None:intergenic 30.0%
TCAACAAAAAATTTGACGGA+GGG - chr3_1:77679439-77679458 Msa0377280:CDS 30.0%
ATTAACGTTGTGCAATTTCA+GGG - chr3_1:77679471-77679490 Msa0377280:intron 30.0%
!! TTGAAGTGTTGTTAACGTTA+AGG - chr3_1:77679500-77679519 Msa0377280:intron 30.0%
!! TGAAGTGTTGTTAACGTTAA+GGG - chr3_1:77679501-77679520 Msa0377280:intron 30.0%
TTGACGAAACTTACAATTTC+AGG - chr3_1:77679529-77679548 Msa0377280:intron 30.0%
TGACGAAACTTACAATTTCA+GGG - chr3_1:77679530-77679549 Msa0377280:intron 30.0%
! ACTATGAAAAGTTGCTCTTT+TGG - chr3_1:77679582-77679601 Msa0377280:intron 30.0%
CAACAATTAACTACCATTGA+AGG + chr3_1:77679834-77679853 None:intergenic 30.0%
!! ACTCAATATTGTTTTGTTCC+GGG - chr3_1:77680068-77680087 Msa0377280:intron 30.0%
GCATCACAATTGAAAATTGA+TGG + chr3_1:77680151-77680170 None:intergenic 30.0%
! ACAATTTTTACAGCAAGCAA+TGG - chr3_1:77680269-77680288 Msa0377280:intron 30.0%
! AGCAATTTTCCTAAAGTGAT+TGG - chr3_1:77680361-77680380 Msa0377280:CDS 30.0%
CAAATTGAACCAATCACTTT+AGG + chr3_1:77680373-77680392 None:intergenic 30.0%
! AAGTGATTGGTTCAATTTGT+TGG - chr3_1:77680374-77680393 Msa0377280:intron 30.0%
!!! TTCTGCTTTTTGGTTAAACA+AGG - chr3_1:77680403-77680422 Msa0377280:intron 30.0%
! TGATGATGTCTTTGATATGA+TGG - chr3_1:77680435-77680454 Msa0377280:intron 30.0%
! TCTAGGAGTATGATAAACAA+AGG - chr3_1:77680881-77680900 Msa0377280:intron 30.0%
! CTAGGAGTATGATAAACAAA+GGG - chr3_1:77680882-77680901 Msa0377280:intron 30.0%
TCGGACATAGTAATAATTTG+AGG - chr3_1:77681335-77681354 Msa0377280:intron 30.0%
ACGCAATATATCAATGTTAG+TGG - chr3_1:77681364-77681383 Msa0377280:intron 30.0%
TAAAATGAAGGGTCATGATT+TGG - chr3_1:77681438-77681457 Msa0377280:intron 30.0%
TAACTCAAAAGAGTTACTCT+TGG + chr3_1:77681533-77681552 None:intergenic 30.0%
TGTGTCAAACAAATTAGGAA+AGG + chr3_1:77682245-77682264 None:intergenic 30.0%
!!! AACCACTTTTTGACAACTTT+TGG - chr3_1:77682389-77682408 Msa0377280:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr3_1:77682461-77682480 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr3_1:77682512-77682531 Msa0377280:intron 30.0%
! ATTAAGACCGATGCTTTATT+TGG - chr3_1:77682567-77682586 Msa0377280:intron 30.0%
TTACTGTCCAAATAAAGCAT+CGG + chr3_1:77682577-77682596 None:intergenic 30.0%
ATAAGAATAAGCCAACGTAA+CGG - chr3_1:77682606-77682625 Msa0377280:intron 30.0%
CATTCAATAAATGGTGTATG+TGG + chr3_1:77683032-77683051 None:intergenic 30.0%
TCACTTAGTGAGATAAAATC+TGG - chr3_1:77683126-77683145 Msa0377280:intron 30.0%
TTAGTGAGATAAAATCTGGT+AGG - chr3_1:77683130-77683149 Msa0377280:intron 30.0%
TGTATGCTTTATACTCTATC+TGG - chr3_1:77683163-77683182 Msa0377280:intron 30.0%
TATAATACTATGTGTGAACG+TGG + chr3_1:77683479-77683498 None:intergenic 30.0%
!!! GTTGCTTTTTATTCTGCTTT+GGG + chr3_1:77683581-77683600 None:intergenic 30.0%
!!! TGTTGCTTTTTATTCTGCTT+TGG + chr3_1:77683582-77683601 None:intergenic 30.0%
CTATGTATCAGTGTCATATT+CGG + chr3_1:77683918-77683937 None:intergenic 30.0%
!!! TATGGACTTTGTTTTTTCAG+TGG - chr3_1:77684141-77684160 Msa0377280:intron 30.0%
!!! TTGCAACTGGGTTTTAATTT+AGG - chr3_1:77684169-77684188 Msa0377280:intron 30.0%
! TTGTTAATGGTATTGAAGGT+AGG - chr3_1:77684217-77684236 Msa0377280:intron 30.0%
! TCTTGTAATTTCTGGATGAT+CGG - chr3_1:77684319-77684338 Msa0377280:intron 30.0%
TTATTAAAAAACTCGGTCAC+TGG + chr3_1:77684361-77684380 None:intergenic 30.0%
!!! CCATTTTTAGTTGGTTTGAA+TGG + chr3_1:77684521-77684540 None:intergenic 30.0%
CCATTCAAACCAACTAAAAA+TGG - chr3_1:77684518-77684537 Msa0377280:CDS 30.0%
AATGATTACAGTTGGAACAA+AGG - chr3_1:77684551-77684570 Msa0377280:intron 30.0%
GAATGATTCATTAGTAGAGT+AGG + chr3_1:77684724-77684743 None:intergenic 30.0%
CAAAATAGCATGTGAATGAA+TGG - chr3_1:77684795-77684814 Msa0377280:intron 30.0%
AACAATGAGTTCTTTATCAC+AGG - chr3_1:77685398-77685417 Msa0377280:intron 30.0%
ACAATGAGTTCTTTATCACA+GGG - chr3_1:77685399-77685418 Msa0377280:intron 30.0%
ATACTATTCATTTAGCACGA+AGG + chr3_1:77685446-77685465 None:intergenic 30.0%
AAAAGCAACTTCAATCTCAA+GGG - chr3_1:77685550-77685569 Msa0377280:intron 30.0%
GACAAATAAAATACACAAGC+AGG + chr3_1:77685693-77685712 None:intergenic 30.0%
! GTCGTCAATTAGTAATTTTG+TGG + chr3_1:77685784-77685803 None:intergenic 30.0%
ACTTTGTTGATATTGCAGAT+AGG - chr3_1:77685923-77685942 Msa0377280:intron 30.0%
CTTTGTTGATATTGCAGATA+GGG - chr3_1:77685924-77685943 Msa0377280:intron 30.0%
ATTAGAAGACAATATGCAAG+TGG - chr3_1:77686064-77686083 Msa0377280:intron 30.0%
AGTTTAATAGCTTCAATGGA+CGG + chr3_1:77686255-77686274 None:intergenic 30.0%
TATCTACTAATCTGTCCATA+AGG + chr3_1:77686301-77686320 None:intergenic 30.0%
GAATCTAGATTGAAAAGGAA+TGG + chr3_1:77686414-77686433 None:intergenic 30.0%
GATAAACCAAAAGATAGGTT+AGG - chr3_1:77686891-77686910 Msa0377280:intron 30.0%
! TTTATGCCTAACCTATCTTT+TGG + chr3_1:77686900-77686919 None:intergenic 30.0%
!!! TGCTGTTTCTTTGTCTTTTT+GGG + chr3_1:77687033-77687052 None:intergenic 30.0%
!!! TTGCTGTTTCTTTGTCTTTT+TGG + chr3_1:77687034-77687053 None:intergenic 30.0%
ATCTAAGCAAAAAGGTAAAC+AGG - chr3_1:77687067-77687086 Msa0377280:intron 30.0%
AATTAATCTTCATTAGGGAG+AGG - chr3_1:77687308-77687327 Msa0377280:intron 30.0%
ATTCCAACCATATCTATTCT+GGG - chr3_1:77687889-77687908 Msa0377280:intron 30.0%
! AAGTTTTCCCAGAATAGATA+TGG + chr3_1:77687899-77687918 None:intergenic 30.0%
GTATATGACAAAGTAACCAA+AGG + chr3_1:77687989-77688008 None:intergenic 30.0%
TCCTATAGAACTTGGTTTAA+TGG - chr3_1:77688129-77688148 Msa0377280:intron 30.0%
TCCATTAAACCAAGTTCTAT+AGG + chr3_1:77688133-77688152 None:intergenic 30.0%
AGTGTCTATGCCATTATATT+CGG - chr3_1:77688252-77688271 Msa0377280:intron 30.0%
GTTTAACGTACCGAATATAA+TGG + chr3_1:77688265-77688284 None:intergenic 30.0%
! CAAGTTCTTTTCTAGATGAA+AGG + chr3_1:77688457-77688476 None:intergenic 30.0%
AAATCCTTAAAGAATGTCTC+GGG + chr3_1:77688491-77688510 None:intergenic 30.0%
!!! TATTTGATTTTTCAGGTAGC+TGG - chr3_1:77688742-77688761 Msa0377280:intron 30.0%
! TTATCTTTTGTCTATGGAGT+TGG + chr3_1:77688970-77688989 None:intergenic 30.0%
AGACATTTCTGAATATTCCA+AGG + chr3_1:77689142-77689161 None:intergenic 30.0%
ATTGAAAATGTTATAGCTGC+TGG + chr3_1:77689183-77689202 None:intergenic 30.0%
ACAATTCTTCAACCTTCCAA+TGG - chr3_1:77679035-77679054 Msa0377280:three_prime_UTR 35.0%
TTCTTCTTCTTCTCTTCCAT+TGG + chr3_1:77679054-77679073 None:intergenic 35.0%
GGAATACTAGGAATTAGATG+TGG + chr3_1:77679198-77679217 None:intergenic 35.0%
TTAAATGGTGTGGGAATACT+AGG + chr3_1:77679210-77679229 None:intergenic 35.0%
CACATAAGTGCAAAACTTCA+GGG - chr3_1:77679401-77679420 Msa0377280:CDS 35.0%
ACATAAGTGCAAAACTTCAG+GGG - chr3_1:77679402-77679421 Msa0377280:CDS 35.0%
GTCAACAAAAAATTTGACGG+AGG - chr3_1:77679438-77679457 Msa0377280:CDS 35.0%
CAACAAAAAATTTGACGGAG+GGG - chr3_1:77679440-77679459 Msa0377280:CDS 35.0%
AACAAAAAATTTGACGGAGG+GGG - chr3_1:77679441-77679460 Msa0377280:CDS 35.0%
GATTAACGTTGTGCAATTTC+AGG - chr3_1:77679470-77679489 Msa0377280:intron 35.0%
TTAACGTTGTGCAATTTCAG+GGG - chr3_1:77679472-77679491 Msa0377280:intron 35.0%
!! GAAGTGTTGTTAACGTTAAG+GGG - chr3_1:77679502-77679521 Msa0377280:intron 35.0%
! AAGTGTTGTTAACGTTAAGG+GGG - chr3_1:77679503-77679522 Msa0377280:intron 35.0%
GACGAAACTTACAATTTCAG+GGG - chr3_1:77679531-77679550 Msa0377280:intron 35.0%
ACGAAACTTACAATTTCAGG+GGG - chr3_1:77679532-77679551 Msa0377280:intron 35.0%
CTGAGTTACTCATAGTAAGA+TGG - chr3_1:77679723-77679742 Msa0377280:intron 35.0%
! TCTTAAAAGCGCAATCTGTT+GGG + chr3_1:77679969-77679988 None:intergenic 35.0%
! TTCTTAAAAGCGCAATCTGT+TGG + chr3_1:77679970-77679989 None:intergenic 35.0%
CTTTGAGTAGGAATAATTCC+CGG + chr3_1:77680089-77680108 None:intergenic 35.0%
TGTGATGCTACTGTTTATTC+TGG - chr3_1:77680163-77680182 Msa0377280:CDS 35.0%
! ATTTTTACAGCAAGCAATGG+CGG - chr3_1:77680272-77680291 Msa0377280:intron 35.0%
TAACTGTCCTTGGAGATAAA+TGG - chr3_1:77680296-77680315 Msa0377280:CDS 35.0%
!! TTGGCAATTGTTCTGCTTTT+TGG - chr3_1:77680393-77680412 Msa0377280:intron 35.0%
ATGGATCCCTTCTCATATAT+AGG - chr3_1:77681491-77681510 Msa0377280:intron 35.0%
TGGATCCCTTCTCATATATA+GGG - chr3_1:77681492-77681511 Msa0377280:intron 35.0%
TGGACAAAGATTTCAACAAG+AGG - chr3_1:77682060-77682079 Msa0377280:intron 35.0%
AGTGTTGCATAGTCAATAGT+GGG + chr3_1:77682102-77682121 None:intergenic 35.0%
TAGTGTTGCATAGTCAATAG+TGG + chr3_1:77682103-77682122 None:intergenic 35.0%
! TCTTTTATCTCGTGATGAGA+AGG - chr3_1:77682177-77682196 Msa0377280:CDS 35.0%
AGGATATGAAATCTGCTTGA+GGG + chr3_1:77682225-77682244 None:intergenic 35.0%
AAGGATATGAAATCTGCTTG+AGG + chr3_1:77682226-77682245 None:intergenic 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG + chr3_1:77682394-77682413 None:intergenic 35.0%
!! ACGTTGGCTTATTCTTATGT+TGG + chr3_1:77682604-77682623 None:intergenic 35.0%
TAAGAATAAGCCAACGTAAC+GGG - chr3_1:77682607-77682626 Msa0377280:intron 35.0%
TTAGGAAAACTACGACTAGA+TGG - chr3_1:77682802-77682821 Msa0377280:intron 35.0%
ATCATGTCATATACATCCTC+CGG + chr3_1:77683089-77683108 None:intergenic 35.0%
! ACTAAGTGATATCGGTTACA+TGG + chr3_1:77683115-77683134 None:intergenic 35.0%
!! TTTAGTGCTCATTTTGATGG+TGG + chr3_1:77683373-77683392 None:intergenic 35.0%
! AGGTTTAGTGCTCATTTTGA+TGG + chr3_1:77683376-77683395 None:intergenic 35.0%
TATGTGTGAACGTGGTTATT+GGG + chr3_1:77683471-77683490 None:intergenic 35.0%
!! GCTTTGGGATATGATTATGA+AGG + chr3_1:77683566-77683585 None:intergenic 35.0%
! TGAATGAGTCTGAGATATCA+TGG + chr3_1:77683636-77683655 None:intergenic 35.0%
GTAGGATTTCAACAATATGC+AGG - chr3_1:77683752-77683771 Msa0377280:intron 35.0%
TAACCATTAACCGCATGTAT+TGG - chr3_1:77683977-77683996 Msa0377280:intron 35.0%
TATCACAACACCAATACATG+CGG + chr3_1:77683990-77684009 None:intergenic 35.0%
! ATTATAGGTGCTACATTTGG+AGG - chr3_1:77684052-77684071 Msa0377280:CDS 35.0%
! TTATAGGTGCTACATTTGGA+GGG - chr3_1:77684053-77684072 Msa0377280:CDS 35.0%
!! TTTTTGGGGGTTTTTTGGAT+GGG - chr3_1:77684100-77684119 Msa0377280:intron 35.0%
!!! CAACTGGGTTTTAATTTAGG+CGG - chr3_1:77684172-77684191 Msa0377280:intron 35.0%
! TTTAATTTAGGCGGTGATGT+TGG - chr3_1:77684181-77684200 Msa0377280:intron 35.0%
!! TGTTGGTGGTTGTTTGTTAA+TGG - chr3_1:77684204-77684223 Msa0377280:intron 35.0%
!! GTCTATTTGGGGTTTTCTTT+TGG - chr3_1:77684269-77684288 Msa0377280:intron 35.0%
GAATGAATGGTATCACAAGA+TGG - chr3_1:77684808-77684827 Msa0377280:intron 35.0%
CAATGAGTTCTTTATCACAG+GGG - chr3_1:77685400-77685419 Msa0377280:intron 35.0%
GATTAATTCATGCTTGTGTC+AGG - chr3_1:77685487-77685506 Msa0377280:intron 35.0%
AACAATGAGTTGTGCAAGTT+GGG + chr3_1:77685524-77685543 None:intergenic 35.0%
!! CTTGAGATTGAAGTTGCTTT+TGG + chr3_1:77685551-77685570 None:intergenic 35.0%
CAAAAGCAACTTCAATCTCA+AGG - chr3_1:77685549-77685568 Msa0377280:intron 35.0%
AGTAAATAGGCTAGTGTCAA+TGG - chr3_1:77686111-77686130 Msa0377280:intron 35.0%
AAACTAAACTCTTACCTCTG+AGG - chr3_1:77686270-77686289 Msa0377280:intron 35.0%
AGAGAAGATAGATGTTTGTG+TGG - chr3_1:77686493-77686512 Msa0377280:intron 35.0%
TAAAACTTACCCACTACAAG+TGG + chr3_1:77686600-77686619 None:intergenic 35.0%
AGTTACCTGAGACAATTTCA+GGG + chr3_1:77686781-77686800 None:intergenic 35.0%
TAGTTACCTGAGACAATTTC+AGG + chr3_1:77686782-77686801 None:intergenic 35.0%
ATTGTCTCAGGTAACTAACA+TGG - chr3_1:77686785-77686804 Msa0377280:intron 35.0%
CTTCCGATAAACCAAAAGAT+AGG - chr3_1:77686886-77686905 Msa0377280:intron 35.0%
ATATATTGAGCACGTGATAG+AGG + chr3_1:77686943-77686962 None:intergenic 35.0%
TGTATACATACACACACAAG+AGG - chr3_1:77686988-77687007 Msa0377280:intron 35.0%
!! TGTTTCTTTGTCTTTTTGGG+GGG + chr3_1:77687030-77687049 None:intergenic 35.0%
!! CTGTTTCTTTGTCTTTTTGG+GGG + chr3_1:77687031-77687050 None:intergenic 35.0%
!!! GCTGTTTCTTTGTCTTTTTG+GGG + chr3_1:77687032-77687051 None:intergenic 35.0%
GATTTCTATCGGGATACAAA+TGG + chr3_1:77687097-77687116 None:intergenic 35.0%
TACTAGAATATCAGCGGTAT+AGG + chr3_1:77687289-77687308 None:intergenic 35.0%
!! TTCCAACACTTGTTGATTCA+AGG + chr3_1:77687435-77687454 None:intergenic 35.0%
! TCATCAATCGATTCTGACTT+TGG + chr3_1:77687518-77687537 None:intergenic 35.0%
TATTCGGAAGCAAGCAAATA+TGG - chr3_1:77687643-77687662 Msa0377280:intron 35.0%
ACTCTGTCACATAAAGGAAA+TGG + chr3_1:77687841-77687860 None:intergenic 35.0%
TTGAGAACTCTGTCACATAA+AGG + chr3_1:77687847-77687866 None:intergenic 35.0%
GATTCCAACCATATCTATTC+TGG - chr3_1:77687888-77687907 Msa0377280:intron 35.0%
TTTCCCAGAATAGATATGGT+TGG + chr3_1:77687895-77687914 None:intergenic 35.0%
GTGTAAGAGTTCTTGTATTC+AGG - chr3_1:77687929-77687948 Msa0377280:intron 35.0%
TGACATTACAATCTCACCTT+TGG - chr3_1:77687970-77687989 Msa0377280:intron 35.0%
! AAAGATGTTTTTCTCTGCAG+TGG - chr3_1:77688021-77688040 Msa0377280:intron 35.0%
!! AATGGATTAGCCAAAGACTT+CGG - chr3_1:77688090-77688109 Msa0377280:intron 35.0%
AACTTGGTTTAATGGAAGAC+AGG - chr3_1:77688137-77688156 Msa0377280:intron 35.0%
GTTTCGCTTACTATTCTCAT+CGG - chr3_1:77688296-77688315 Msa0377280:intron 35.0%
TTATCCTTTGCAACCATAAG+AGG - chr3_1:77688790-77688809 Msa0377280:intron 35.0%
AAACTGTAGTGTATTCAGTC+TGG - chr3_1:77688929-77688948 Msa0377280:intron 35.0%
TCTTCTTCTCTTCCATTGGA+AGG + chr3_1:77679050-77679069 None:intergenic 40.0%
ACACTTTGCCATTAGACTCA+AGG - chr3_1:77679169-77679188 Msa0377280:three_prime_UTR 40.0%
GCACATAAGTGCAAAACTTC+AGG - chr3_1:77679400-77679419 Msa0377280:CDS 40.0%
CATAAGTGCAAAACTTCAGG+GGG - chr3_1:77679403-77679422 Msa0377280:CDS 40.0%
! CTTAAAAGCGCAATCTGTTG+GGG + chr3_1:77679968-77679987 None:intergenic 40.0%
TGAGGATCCTTTCTTTGAGT+AGG + chr3_1:77680101-77680120 None:intergenic 40.0%
AAAATTCACAGACCACGTGA+TGG + chr3_1:77680127-77680146 None:intergenic 40.0%
TGCTACTGTTTATTCTGGTC+TGG - chr3_1:77680168-77680187 Msa0377280:CDS 40.0%
AATTGTGCAGCACTTAAGTG+TGG + chr3_1:77680255-77680274 None:intergenic 40.0%
AGACCTTCAAAATTGCTCTC+AGG + chr3_1:77680337-77680356 None:intergenic 40.0%
! TTCCAAGAGTTATGATGACG+TGG - chr3_1:77680459-77680478 Msa0377280:intron 40.0%
AACCACGTCATCATAACTCT+TGG + chr3_1:77680464-77680483 None:intergenic 40.0%
AGTACATTAGCATGTGTCCT+GGG + chr3_1:77680920-77680939 None:intergenic 40.0%
TAGTACATTAGCATGTGTCC+TGG + chr3_1:77680921-77680940 None:intergenic 40.0%
TGGTTGTGATTAAGCGCATT+GGG + chr3_1:77681407-77681426 None:intergenic 40.0%
ATGGTTGTGATTAAGCGCAT+TGG + chr3_1:77681408-77681427 None:intergenic 40.0%
AGACTTACTCTTGGAGTCAA+TGG - chr3_1:77681472-77681491 Msa0377280:intron 40.0%
ATCCCTTCTCATATATAGGG+AGG - chr3_1:77681495-77681514 Msa0377280:intron 40.0%
TCCCTTCTCATATATAGGGA+GGG - chr3_1:77681496-77681515 Msa0377280:intron 40.0%
TCCCTCCCTATATATGAGAA+GGG + chr3_1:77681500-77681519 None:intergenic 40.0%
CTAAATGGAGGGATGTGATT+TGG + chr3_1:77681558-77681577 None:intergenic 40.0%
TCCAAGAGTAACTACGCATA+CGG + chr3_1:77681652-77681671 None:intergenic 40.0%
GAAAATTACAGTTGCGTGTG+AGG + chr3_1:77682033-77682052 None:intergenic 40.0%
! GATGAGAAGGACAAGTTTTG+AGG - chr3_1:77682190-77682209 Msa0377280:CDS 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr3_1:77682451-77682470 None:intergenic 40.0%
AAGAATAAGCCAACGTAACG+GGG - chr3_1:77682608-77682627 Msa0377280:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr3_1:77683071-77683090 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr3_1:77683070-77683089 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr3_1:77683070-77683089 Msa0377280:intron 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr3_1:77683297-77683316 Msa0377280:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr3_1:77683298-77683317 Msa0377280:intron 40.0%
AAAACTTGTCTGCACAGTCA+TGG - chr3_1:77683444-77683463 Msa0377280:intron 40.0%
CTATGTGTGAACGTGGTTAT+TGG + chr3_1:77683472-77683491 None:intergenic 40.0%
AGATCTGACTGAGAAGTTGT+TGG + chr3_1:77683608-77683627 None:intergenic 40.0%
! CCATTTAACCAAAGCACTAC+TGG + chr3_1:77683857-77683876 None:intergenic 40.0%
CCAGTAGTGCTTTGGTTAAA+TGG - chr3_1:77683854-77683873 Msa0377280:intron 40.0%
GTAGTGCTTTGGTTAAATGG+AGG - chr3_1:77683857-77683876 Msa0377280:intron 40.0%
ACACCAATACATGCGGTTAA+TGG + chr3_1:77683983-77684002 None:intergenic 40.0%
ATCTGGTGTCTGATACATGT+CGG + chr3_1:77684017-77684036 None:intergenic 40.0%
!! GTTTTTGGGGGTTTTTTGGA+TGG - chr3_1:77684099-77684118 Msa0377280:intron 40.0%
!! TTCAGTGGTTGTTTTGCAAC+TGG - chr3_1:77684156-77684175 Msa0377280:intron 40.0%
!! TCAGTGGTTGTTTTGCAACT+GGG - chr3_1:77684157-77684176 Msa0377280:intron 40.0%
! ATGGTATTGAAGGTAGGTCT+TGG - chr3_1:77684223-77684242 Msa0377280:intron 40.0%
!!! TGGCGTTTTGGTGTCTATTT+GGG - chr3_1:77684257-77684276 Msa0377280:intron 40.0%
CAACAAAATCGCGTAGTTGT+TGG + chr3_1:77684581-77684600 None:intergenic 40.0%
!! CTGTTTCCTACTTGTTGTAG+TGG - chr3_1:77684656-77684675 Msa0377280:intron 40.0%
TGTTTGCCACTACAACAAGT+AGG + chr3_1:77684665-77684684 None:intergenic 40.0%
ACCTGTCAAATCATCGTTCA+CGG + chr3_1:77684754-77684773 None:intergenic 40.0%
! TAGCTCTATGTTATGCAGCA+AGG - chr3_1:77685324-77685343 Msa0377280:intron 40.0%
AGCTCTATGTTATGCAGCAA+GGG - chr3_1:77685325-77685344 Msa0377280:intron 40.0%
ACAATGAGTTGTGCAAGTTG+GGG + chr3_1:77685523-77685542 None:intergenic 40.0%
GAACAATGAGTTGTGCAAGT+TGG + chr3_1:77685525-77685544 None:intergenic 40.0%
ATCAAAGACGTACACATTCG+AGG + chr3_1:77685724-77685743 None:intergenic 40.0%
TCTGTGTTGAATTCCAGAAG+AGG + chr3_1:77685953-77685972 None:intergenic 40.0%
CCTATTTACTCTTGCGCAAA+CGG + chr3_1:77686101-77686120 None:intergenic 40.0%
AAATAGGCTAGTGTCAATGG+AGG - chr3_1:77686114-77686133 Msa0377280:intron 40.0%
AGCATATGTGCTAACTCAAC+TGG - chr3_1:77686375-77686394 Msa0377280:intron 40.0%
CATATGCTTACCTTCATGTC+TGG - chr3_1:77686457-77686476 Msa0377280:intron 40.0%
TCTTGCTAAACCAGACATGA+AGG + chr3_1:77686470-77686489 None:intergenic 40.0%
! TTCATGTCTGGTTTAGCAAG+AGG - chr3_1:77686469-77686488 Msa0377280:intron 40.0%
! TCATGTCTGGTTTAGCAAGA+GGG - chr3_1:77686470-77686489 Msa0377280:intron 40.0%
CTCTTCATGCTAAGCTTGTA+GGG - chr3_1:77686561-77686580 Msa0377280:intron 40.0%
GTTACCTGAGACAATTTCAG+GGG + chr3_1:77686780-77686799 None:intergenic 40.0%
AACTGAACCAAGAAACTCCA+AGG - chr3_1:77687140-77687159 Msa0377280:intron 40.0%
!!! CCAATCTATTTTTTCCGCGA+TGG + chr3_1:77687208-77687227 None:intergenic 40.0%
CCATCGCGGAAAAAATAGAT+TGG - chr3_1:77687205-77687224 Msa0377280:intron 40.0%
TAATCTTCATTAGGGAGAGG+AGG - chr3_1:77687311-77687330 Msa0377280:intron 40.0%
AATCTTCATTAGGGAGAGGA+GGG - chr3_1:77687312-77687331 Msa0377280:intron 40.0%
CACCTTGAATCAACAAGTGT+TGG - chr3_1:77687430-77687449 Msa0377280:intron 40.0%
TGTTGATCCGAACTTACAGA+AGG + chr3_1:77687469-77687488 None:intergenic 40.0%
AACAAAGAGGGAAGACATAG+AGG + chr3_1:77687728-77687747 None:intergenic 40.0%
!! CTGGGAAAACTTGTTAAGTC+AGG - chr3_1:77687907-77687926 Msa0377280:intron 40.0%
GATTCAGTATTACCGTTGCT+TGG - chr3_1:77688051-77688070 Msa0377280:intron 40.0%
TATTACCGTTGCTTGGTACA+CGG - chr3_1:77688058-77688077 Msa0377280:intron 40.0%
GGTACACGGTCTTTAGTAAA+TGG - chr3_1:77688072-77688091 Msa0377280:intron 40.0%
TGTGTTCAAACCGAAGTCTT+TGG + chr3_1:77688103-77688122 None:intergenic 40.0%
CAACAGAGTCCTATAGAACT+TGG - chr3_1:77688121-77688140 Msa0377280:intron 40.0%
TAGACCCGAGACATTCTTTA+AGG - chr3_1:77688484-77688503 Msa0377280:intron 40.0%
!!! TGATTTTTCAGGTAGCTGGA+TGG - chr3_1:77688746-77688765 Msa0377280:intron 40.0%
!!! CTGCTAAAGGCATTTTTGGA+AGG - chr3_1:77688859-77688878 Msa0377280:intron 40.0%
AGATGCTGCAGAAAATATGC+AGG + chr3_1:77689046-77689065 None:intergenic 40.0%
TCTAGGAAGTCAACAGGTAA+AGG + chr3_1:77689110-77689129 None:intergenic 40.0%
TTCCTAGAGTTGTCAAACCT+TGG - chr3_1:77689122-77689141 Msa0377280:intron 40.0%
TTCCAAGGTTTGACAACTCT+AGG + chr3_1:77689127-77689146 None:intergenic 40.0%
TGTGGATGCCTTGAGTCTAA+TGG + chr3_1:77679180-77679199 None:intergenic 45.0%
GGAACAACGCTTAAGTGTCT+TGG + chr3_1:77679901-77679920 None:intergenic 45.0%
! GTGCCTGAGAGCAATTTTGA+AGG - chr3_1:77680331-77680350 Msa0377280:CDS 45.0%
!! AAAGGGCTTAAAGAGTGCCT+CGG + chr3_1:77680528-77680547 None:intergenic 45.0%
! TTAAGCGCATTGGGTGTTAC+TGG + chr3_1:77681398-77681417 None:intergenic 45.0%
GTCCCTCCCTATATATGAGA+AGG + chr3_1:77681501-77681520 None:intergenic 45.0%
! GTAACGGGGATGAGAATGTT+GGG - chr3_1:77682622-77682641 Msa0377280:intron 45.0%
GTGATAGAACATACACCCTC+CGG - chr3_1:77682936-77682955 Msa0377280:intron 45.0%
AACTCCAAGACTCGAGACAT+TGG - chr3_1:77683411-77683430 Msa0377280:intron 45.0%
ACTCCAAGACTCGAGACATT+GGG - chr3_1:77683412-77683431 Msa0377280:intron 45.0%
TTACCTCAGCAGCCAAAAGT+AGG - chr3_1:77683734-77683753 Msa0377280:CDS 45.0%
!! AATCCTACTTTTGGCTGCTG+AGG + chr3_1:77683740-77683759 None:intergenic 45.0%
! TAACCAAAGCACTACTGGCT+TGG + chr3_1:77683852-77683871 None:intergenic 45.0%
!! ATTCGGTGTTTGTATCTGCG+AGG + chr3_1:77683901-77683920 None:intergenic 45.0%
TTGGAGGGATGGTGTTTCTT+TGG - chr3_1:77684068-77684087 Msa0377280:intron 45.0%
TGGAGGGATGGTGTTTCTTT+GGG - chr3_1:77684069-77684088 Msa0377280:intron 45.0%
!! GGTGGTTTTTGGGGGTTTTT+TGG - chr3_1:77684095-77684114 Msa0377280:intron 45.0%
!!! GTGGCGTTTTGGTGTCTATT+TGG - chr3_1:77684256-77684275 Msa0377280:intron 45.0%
!!! GGCGTTTTGGTGTCTATTTG+GGG - chr3_1:77684258-77684277 Msa0377280:intron 45.0%
!!! GTTTTGTGTTTTGAAGGGCC+TGG - chr3_1:77684455-77684474 Msa0377280:CDS 45.0%
AGTGGCAAACATGCTGTACT+TGG - chr3_1:77684674-77684693 Msa0377280:intron 45.0%
TCCGTGAACGATGATTTGAC+AGG - chr3_1:77684750-77684769 Msa0377280:intron 45.0%
ACTAATTGACGACACTCTCG+AGG - chr3_1:77685791-77685810 Msa0377280:intron 45.0%
!! ACTCTAGAGCTGAGTATCTC+TGG - chr3_1:77685978-77685997 Msa0377280:intron 45.0%
CCGTTTGCGCAAGAGTAAAT+AGG - chr3_1:77686098-77686117 Msa0377280:intron 45.0%
GCTCTTCATGCTAAGCTTGT+AGG - chr3_1:77686560-77686579 Msa0377280:intron 45.0%
TTAGCCCCTGAAATTGTCTC+AGG - chr3_1:77686773-77686792 Msa0377280:intron 45.0%
TTGAGCACGTGATAGAGGAT+AGG + chr3_1:77686938-77686957 None:intergenic 45.0%
CACACACAAGAGGAAAGACT+AGG - chr3_1:77686998-77687017 Msa0377280:intron 45.0%
GTAGCATCCTTGGAGTTTCT+TGG + chr3_1:77687150-77687169 None:intergenic 45.0%
ACACATGGTTGTAGCATCCT+TGG + chr3_1:77687160-77687179 None:intergenic 45.0%
AAGGATGCTACAACCATGTG+TGG - chr3_1:77687159-77687178 Msa0377280:intron 45.0%
GCGGATAAATTAGCCACACA+TGG + chr3_1:77687175-77687194 None:intergenic 45.0%
GCTTATCAAACCCGCTCTAA+GGG + chr3_1:77687345-77687364 None:intergenic 45.0%
AGCTTATCAAACCCGCTCTA+AGG + chr3_1:77687346-77687365 None:intergenic 45.0%
AAGTTCGGATCAACATCTCC+AGG - chr3_1:77687474-77687493 Msa0377280:intron 45.0%
! TTGCAGACGCTTGATAATCC+TGG + chr3_1:77687495-77687514 None:intergenic 45.0%
AAAGACCGTGTACCAAGCAA+CGG + chr3_1:77688066-77688085 None:intergenic 45.0%
GCTGGATGGACACAAGTATA+TGG - chr3_1:77688760-77688779 Msa0377280:intron 45.0%
TGCTCCTCTTATGGTTGCAA+AGG + chr3_1:77688797-77688816 None:intergenic 45.0%
! AGGCTCCATTTTCACAACCA+GGG - chr3_1:77688824-77688843 Msa0377280:intron 45.0%
GATCTCCCTGGTTGTGAAAA+TGG + chr3_1:77688832-77688851 None:intergenic 45.0%
TTCACAACCAGGGAGATCAT+TGG - chr3_1:77688834-77688853 Msa0377280:intron 45.0%
!! GAGATCATTGGTGCTGCTAA+AGG - chr3_1:77688846-77688865 Msa0377280:intron 45.0%
!!! GGTGCTGCTAAAGGCATTTT+TGG - chr3_1:77688855-77688874 Msa0377280:intron 45.0%
! GTATTCAGTCTGGAACCACT+AGG - chr3_1:77688939-77688958 Msa0377280:intron 45.0%
ATGGAGTTGGCATTTCCTAG+TGG + chr3_1:77688957-77688976 None:intergenic 45.0%
! GACAACTCTAGGAAGTCAAC+AGG + chr3_1:77689116-77689135 None:intergenic 45.0%
!!! TATATATAAATTTTTAAGTT+TGG - chr3_1:77679367-77679386 Msa0377280:CDS 5.0%
!!! ATATATAAATTTTTAAGTTT+GGG - chr3_1:77679368-77679387 Msa0377280:CDS 5.0%
!!! ATTTTTATTTTTTTTGTTTT+AGG - chr3_1:77685162-77685181 Msa0377280:intron 5.0%
!!! ATTTAAAATTTTCAATTTTA+AGG + chr3_1:77686726-77686745 None:intergenic 5.0%
CTGTTGGGGAGGGATCTATT+AGG + chr3_1:77679954-77679973 None:intergenic 50.0%
AAAGCGCAATCTGTTGGGGA+GGG + chr3_1:77679964-77679983 None:intergenic 50.0%
! AAAAGCGCAATCTGTTGGGG+AGG + chr3_1:77679965-77679984 None:intergenic 50.0%
CAATGGCGGTTAACTGTCCT+TGG - chr3_1:77680286-77680305 Msa0377280:intron 50.0%
!! AAGGGCTTAAAGAGTGCCTC+GGG + chr3_1:77680527-77680546 None:intergenic 50.0%
GCCGTATGCGTAGTTACTCT+TGG - chr3_1:77681648-77681667 Msa0377280:CDS 50.0%
CATTCTCATCCCCGTTACGT+TGG + chr3_1:77682620-77682639 None:intergenic 50.0%
! CGTAACGGGGATGAGAATGT+TGG - chr3_1:77682621-77682640 Msa0377280:intron 50.0%
CTCCAAGACTCGAGACATTG+GGG - chr3_1:77683413-77683432 Msa0377280:intron 50.0%
CTTCCAAGCCAGTAGTGCTT+TGG - chr3_1:77683846-77683865 Msa0377280:intron 50.0%
! AGGTGCTACATTTGGAGGGA+TGG - chr3_1:77684057-77684076 Msa0377280:CDS 50.0%
AGGGATGGTGTTTCTTTGGG+TGG - chr3_1:77684072-77684091 Msa0377280:intron 50.0%
GGGATGGTGTTTCTTTGGGT+GGG - chr3_1:77684073-77684092 Msa0377280:intron 50.0%
GGATGGTGTTTCTTTGGGTG+GGG - chr3_1:77684074-77684093 Msa0377280:intron 50.0%
! TCTTTGGGTGGGGTGGTTTT+TGG - chr3_1:77684084-77684103 Msa0377280:intron 50.0%
! CTTTGGGTGGGGTGGTTTTT+GGG - chr3_1:77684085-77684104 Msa0377280:intron 50.0%
! TTTGGGTGGGGTGGTTTTTG+GGG - chr3_1:77684086-77684105 Msa0377280:intron 50.0%
TAGCGAGCGATGGGTGTTTA+TGG - chr3_1:77684123-77684142 Msa0377280:intron 50.0%
TTAGGCGGTGATGTTGGTGT+TGG - chr3_1:77684187-77684206 Msa0377280:intron 50.0%
GAAGGTAGGTCTTGGTTACG+TGG - chr3_1:77684231-77684250 Msa0377280:intron 50.0%
GCTCCAACAGAAGAACAACC+AGG + chr3_1:77684476-77684495 None:intergenic 50.0%
GGTTGTTCTTCTGTTGGAGC+TGG - chr3_1:77684476-77684495 Msa0377280:CDS 50.0%
! TGTTGGAGCTGGAGCTTTTG+TGG - chr3_1:77684487-77684506 Msa0377280:CDS 50.0%
CTGTACTTGGAATCACCTGC+TGG - chr3_1:77684687-77684706 Msa0377280:intron 50.0%
TTGGAATCACCTGCTGGTGT+TGG - chr3_1:77684693-77684712 Msa0377280:intron 50.0%
TAGGAGAAACCAACACCAGC+AGG + chr3_1:77684705-77684724 None:intergenic 50.0%
GCGCTTAAATGTGTGAAGCG+CGG - chr3_1:77685629-77685648 Msa0377280:intron 50.0%
GCAGATAGGGAATCCTCTTC+TGG - chr3_1:77685937-77685956 Msa0377280:intron 50.0%
GCTGAGTATCTCTGGTCTCA+TGG - chr3_1:77685986-77686005 Msa0377280:intron 50.0%
!! ACCTCTGAGGTGACACCTTA+TGG - chr3_1:77686283-77686302 Msa0377280:intron 50.0%
! TCCATAAGGTGTCACCTCAG+AGG + chr3_1:77686287-77686306 None:intergenic 50.0%
AGCTTGTAGGGATCACCACA+TGG - chr3_1:77686573-77686592 Msa0377280:intron 50.0%
ACCACATGGACCACTTGTAG+TGG - chr3_1:77686587-77686606 Msa0377280:intron 50.0%
CCACATGGACCACTTGTAGT+GGG - chr3_1:77686588-77686607 Msa0377280:intron 50.0%
CTCATGAGCTGCTCCTCTTA+TGG + chr3_1:77688806-77688825 None:intergenic 50.0%
CATAAGAGGAGCAGCTCATG+AGG - chr3_1:77688804-77688823 Msa0377280:intron 50.0%
! GAGGCTCCATTTTCACAACC+AGG - chr3_1:77688823-77688842 Msa0377280:intron 50.0%
AATGTTAACGAGTGCCCCCG+AGG - chr3_1:77680508-77680527 Msa0377280:intron 55.0%
!! AGGGCTTAAAGAGTGCCTCG+GGG + chr3_1:77680526-77680545 None:intergenic 55.0%
!! GGGATGCTTAAAGAGTGCCC+CGG - chr3_1:77680635-77680654 Msa0377280:intron 55.0%
!! GGATGCTTAAAGAGTGCCCC+GGG - chr3_1:77680636-77680655 Msa0377280:intron 55.0%
!! GATGCTTAAAGAGTGCCCCG+GGG - chr3_1:77680637-77680656 Msa0377280:intron 55.0%
!! ATGCTTAAAGAGTGCCCCGG+GGG - chr3_1:77680638-77680657 Msa0377280:intron 55.0%
TCTTGTTAACGAGTGCCCCC+GGG + chr3_1:77680656-77680675 None:intergenic 55.0%
! GTCTTGTTAACGAGTGCCCC+CGG + chr3_1:77680657-77680676 None:intergenic 55.0%
AAGGGACTGCTAACATGCCC+AGG - chr3_1:77680900-77680919 Msa0377280:intron 55.0%
GAGTAACTACGCATACGGCG+AGG + chr3_1:77681647-77681666 None:intergenic 55.0%
GACCCCAATGTCTCGAGTCT+TGG + chr3_1:77683418-77683437 None:intergenic 55.0%
!! AGCACTACTGGCTTGGAAGC+TGG + chr3_1:77683845-77683864 None:intergenic 55.0%
TGGTGTTTCTTTGGGTGGGG+TGG - chr3_1:77684077-77684096 Msa0377280:intron 55.0%
!! TTGGGTGGGGTGGTTTTTGG+GGG - chr3_1:77684087-77684106 Msa0377280:intron 55.0%
TTTGGATGGGTAGCGAGCGA+TGG - chr3_1:77684113-77684132 Msa0377280:intron 55.0%
TTGGATGGGTAGCGAGCGAT+GGG - chr3_1:77684114-77684133 Msa0377280:intron 55.0%
GGTAGGTCTTGGTTACGTGG+TGG - chr3_1:77684234-77684253 Msa0377280:intron 55.0%
AGGTCTTGGTTACGTGGTGG+TGG - chr3_1:77684237-77684256 Msa0377280:intron 55.0%
!!! GTTACGTGGTGGTGGCGTTT+TGG - chr3_1:77684245-77684264 Msa0377280:intron 55.0%
GGGCCTGGTTGTTCTTCTGT+TGG - chr3_1:77684470-77684489 Msa0377280:CDS 55.0%
! GCTGGAGCTTTTGTGGAGCA+TGG - chr3_1:77684494-77684513 Msa0377280:CDS 55.0%
ATCACAGGGGAGAGCTATGC+AGG - chr3_1:77685413-77685432 Msa0377280:intron 55.0%
CCCACTACAAGTGGTCCATG+TGG + chr3_1:77686591-77686610 None:intergenic 55.0%
CCGCGATGGAGATTGTTGTG+CGG + chr3_1:77687194-77687213 None:intergenic 55.0%
CCGCACAACAATCTCCATCG+CGG - chr3_1:77687191-77687210 Msa0377280:intron 55.0%
CTTCATTAGGGAGAGGAGGG+AGG - chr3_1:77687315-77687334 Msa0377280:intron 55.0%
AGCAGCACCAATGATCTCCC+TGG + chr3_1:77688844-77688863 None:intergenic 55.0%
GGATCCTCACAGCCATCACG+TGG - chr3_1:77680112-77680131 Msa0377280:CDS 60.0%
CAGACCACGTGATGGCTGTG+AGG + chr3_1:77680119-77680138 None:intergenic 60.0%
!! GGGCTTAAAGAGTGCCTCGG+GGG + chr3_1:77680525-77680544 None:intergenic 60.0%
CTTGTTAACGAGTGCCCCCG+GGG + chr3_1:77680655-77680674 None:intergenic 60.0%
!! GGCGGTGATGTTGGTGTTGG+TGG - chr3_1:77684190-77684209 Msa0377280:intron 60.0%
CATTAGGGAGAGGAGGGAGG+AGG - chr3_1:77687318-77687337 Msa0377280:intron 60.0%
AGGGAGGAGGACCCTTAGAG+CGG - chr3_1:77687331-77687350 Msa0377280:intron 60.0%
GGGAGGAGGACCCTTAGAGC+GGG - chr3_1:77687332-77687351 Msa0377280:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 77679018 77689220 77679018 ID=Msa0377280;Name=Msa0377280
chr3_1 mRNA 77679018 77689220 77679018 ID=Msa0377280-mRNA-1;Parent=Msa0377280;Name=Msa0377280-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.75|0.76|0.92|1|1|13|314|495
chr3_1 exon 77679018 77679481 77679018 ID=Msa0377280-mRNA-1:exon:18584;Parent=Msa0377280-mRNA-1
chr3_1 exon 77680080 77680197 77680080 ID=Msa0377280-mRNA-1:exon:18583;Parent=Msa0377280-mRNA-1
chr3_1 exon 77680288 77680380 77680288 ID=Msa0377280-mRNA-1:exon:18582;Parent=Msa0377280-mRNA-1
chr3_1 exon 77681629 77681753 77681629 ID=Msa0377280-mRNA-1:exon:18581;Parent=Msa0377280-mRNA-1
chr3_1 exon 77681842 77681928 77681842 ID=Msa0377280-mRNA-1:exon:18580;Parent=Msa0377280-mRNA-1
chr3_1 exon 77682103 77682297 77682103 ID=Msa0377280-mRNA-1:exon:18579;Parent=Msa0377280-mRNA-1
chr3_1 exon 77682659 77682729 77682659 ID=Msa0377280-mRNA-1:exon:18578;Parent=Msa0377280-mRNA-1
chr3_1 exon 77682804 77682896 77682804 ID=Msa0377280-mRNA-1:exon:18577;Parent=Msa0377280-mRNA-1
chr3_1 exon 77683467 77683562 77683467 ID=Msa0377280-mRNA-1:exon:18576;Parent=Msa0377280-mRNA-1
chr3_1 exon 77683666 77683767 77683666 ID=Msa0377280-mRNA-1:exon:18575;Parent=Msa0377280-mRNA-1
chr3_1 exon 77683994 77684077 77683994 ID=Msa0377280-mRNA-1:exon:18574;Parent=Msa0377280-mRNA-1
chr3_1 exon 77684360 77684542 77684360 ID=Msa0377280-mRNA-1:exon:18573;Parent=Msa0377280-mRNA-1
chr3_1 exon 77689130 77689220 77689130 ID=Msa0377280-mRNA-1:exon:18572;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77689130 77689220 77689130 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77684360 77684542 77684360 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77683994 77684077 77683994 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77683666 77683767 77683666 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77683467 77683562 77683467 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77682804 77682896 77682804 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77682659 77682729 77682659 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77682103 77682297 77682103 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77681842 77681928 77681842 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77681629 77681753 77681629 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77680288 77680380 77680288 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77680080 77680197 77680080 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 CDS 77679332 77679481 77679332 ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1 three_prime_UTR 77679018 77679331 77679018 ID=Msa0377280-mRNA-1:three_prime_utr;Parent=Msa0377280-mRNA-1
Gene Sequence

>Msa0377280

ATGAAGATTGGTGTTGAACAATTCTTCAACCTTCCAATGGAAGAGAAGAAGAAGAAATTTTGGCAAACACCAAATGATATACAAGGATTTGGAGTAAATTCCTTTTTAGAAGTTGATAAGATAAGTAGTTTACCTCAGCAGCCAAAAGTAGGATTTCAACAATATGCAGGTTACATTACAGTTGATGAAATGCAGAAAAGAGCTTTGTTTTACTACTTTGTTGAAGCAGAAGTTGAACCAGCTTCCAAGCCAGTAGTGCTTTGGTTAAATGGAGTGGTTGTTTTGCAACTGGGTTTTAATTTAGGCGGTGATGTTGGTGTTGGTGGTTGTTTGTTAATGGTATTGAAGGTAGGTCTTGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTGGAGCATGGTCCATTCAAACCAACTAAAAATGGTCTTATTAAAAATGATTACAGTTGGAACAAAGTGGCAAACATGCTGTACTTGGAATCACCTGCTGGTGTTGGTTTCTCCTACTCTACTAATGAATCATTCTACGACTCCGTGAACGATGATTTGACAGCAAGGGATAATCTTGTTTTTTTACAACATTGGTTCACTAAATTCTCAGAATACAAAAACAATGAGTTCTTTATCACAGGGGAGAGCTATGCAGGTCACTATGTACCCCAACTTGCACAACTCATTGTTCAAACCAAAAGCAACTTCAATCTCAAGGGAATTGCAATAGGGAATCCTCTTCTGGAATTCAACACAGATTTCAACTCTAGAGCTGAGTATCTCTGGTCTCATGGACTGATATCAGATTCAACCTATGATTCCTTCACAAAAATATGCAACTTTTCACAAATTAGAAGACAATATGCAAGTGGCGCACTTACTACCGTTTGCGCAAGAGTAAATAGGCTAGTGTCAATGGAGATTAGTAGATATATTGATTCGTATGATGTTACTCTTGATGTGTGTCTATCAACAGTAGAACAACAAGCATATGTGCTAACTCAACTGCAAGAGGGAGAGAAGATAGATGTTTGTGTGGAAGATGAAACATTCACATATTTGAATAGGAAAGAAGTGCAAGAAGCTCTTCATGCTAAGCTTGTAGGGATCACCACATGGACCACTTGTAGTGGAGTTCTCAAATATGACATGCAAAATTTAGAGATTCCAACCATATCTATTCTGGGAAAACTTGTTAAGTCAGGTGTAAGAGTTCTTGTATTCAGTGGAGATCAAGATTCAGTATTACCGTTGCTTGGTACACGGTCTTTAGTAAATGGATTAGCCAAAGACTTCGGTTTGAACACAACAGAGTCCTATAGAACTTGGTTTAATGGAAGACAGGTAGCTGGATGGACACAAGTATATGGTGACATGTTATCCTTTGCAACCATAAGAGGAGCAGCTCATGAGGCTCCATTTTCACAACCAGGGAGATCATTGGTGCTGCTAAAGGCATTTTTGGAAGGAAAATCACTTCCAACTATTCTTTGA
Protein sequence

>Msa0377280

MKIGVEQFFNLPMEEKKKKFWQTPNDIQGFGVNSFLEVDKISSLPQQPKVGFQQYAGYITVDEMQKRALFYYFVEAEVEPASKPVVLWLNGVVVLQLGFNLGGDVGVGGCLLMVLKVGLGPGCSSVGAGAFVEHGPFKPTKNGLIKNDYSWNKVANMLYLESPAGVGFSYSTNESFYDSVNDDLTARDNLVFLQHWFTKFSEYKNNEFFITGESYAGHYVPQLAQLIVQTKSNFNLKGIAIGNPLLEFNTDFNSRAEYLWSHGLISDSTYDSFTKICNFSQIRRQYASGALTTVCARVNRLVSMEISRYIDSYDVTLDVCLSTVEQQAYVLTQLQEGEKIDVCVEDETFTYLNRKEVQEALHAKLVGITTWTTCSGVLKYDMQNLEIPTISILGKLVKSGVRVLVFSGDQDSVLPLLGTRSLVNGLAKDFGLNTTESYRTWFNGRQVAGWTQVYGDMLSFATIRGAAHEAPFSQPGRSLVLLKAFLEGKSLPTIL*