AlfalfaGEDB | Msa0377280

M. sativa cultivar zhongmu-4 / Msa0377280

KEGG: K16297
GO: GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0055044 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF00450.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377280	XP_013459243.1	90.323	465	17	1	31	495	21	457	0.0	860

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377280	sp\|Q93Y09\|SCP45_ARATH	60.613	457	149	2	39	492	30	458	0.0	588

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377280	A0A072UTV7	90.323	465	17	1	31	495	21	457	0.0	860

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0377280	0.816362	5.749783e-52	-8.615850e-47
Msa0004350	Msa0377280	0.822408	2.406859e-53	-8.615850e-47
Msa0004610	Msa0377280	0.806544	7.811222e-50	-8.615850e-47
Msa0006050	Msa0377280	0.822797	1.954954e-53	-8.615850e-47
Msa0006700	Msa0377280	0.892294	1.813273e-74	-8.615850e-47
Msa0008850	Msa0377280	0.876570	1.257500e-68	-8.615850e-47
Msa0012780	Msa0377280	-0.818535	1.863445e-52	-8.615850e-47
Msa0012820	Msa0377280	-0.816246	6.103332e-52	-8.615850e-47
Msa0014410	Msa0377280	0.877941	4.193726e-69	-8.615850e-47
Msa0015100	Msa0377280	0.814788	1.289106e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377280	MtrunA17_Chr3g0094811	90.323	465	17	1	31	495	21	457	0.0	860
Msa0377280	MtrunA17_Chr2g0304931	62.609	460	138	5	37	493	35	463	0.0	591
Msa0377280	MtrunA17_Chr7g0221551	59.737	457	153	2	39	492	29	457	0.0	577
Msa0377280	MtrunA17_Chr3g0131731	57.505	473	166	6	30	495	20	464	0.0	573
Msa0377280	MtrunA17_Chr8g0385871	56.399	461	168	3	37	492	30	462	0.0	556
Msa0377280	MtrunA17_Chr1g0204191	52.735	457	161	7	37	492	88	490	2.92e-161	466
Msa0377280	MtrunA17_Chr3g0126051	42.562	484	229	7	20	492	18	463	1.60e-138	407
Msa0377280	MtrunA17_Chr3g0126031	43.750	464	217	7	39	492	27	456	6.76e-135	398
Msa0377280	MtrunA17_Chr5g0431301	44.111	467	215	8	39	492	28	461	2.59e-130	386
Msa0377280	MtrunA17_Chr1g0165811	61.818	275	76	2	31	305	21	266	1.06e-121	357

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377280	AT1G28110.1	60.613	457	149	2	39	492	30	458	0.0	588
Msa0377280	AT1G28110.2	60.613	457	149	2	39	492	30	458	0.0	588
Msa0377280	AT2G33530.1	58.785	461	157	4	37	492	30	462	0.0	571
Msa0377280	AT1G43780.1	44.468	479	223	10	26	492	23	470	3.10e-131	389
Msa0377280	AT5G42240.1	43.923	469	221	8	35	492	27	464	2.65e-129	384
Msa0377280	AT2G12480.3	43.162	468	220	7	35	492	26	457	2.88e-128	381
Msa0377280	AT5G42230.1	43.162	468	226	7	35	492	23	460	4.30e-128	381
Msa0377280	AT5G42230.2	43.162	468	226	7	35	492	23	460	4.30e-128	381
Msa0377280	AT2G12480.4	42.275	466	203	7	35	492	26	433	6.08e-122	364
Msa0377280	AT2G12480.1	41.631	466	204	7	35	492	26	431	9.15e-120	358

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Find 101 sgRNAs with CRISPR-Local

Find 575 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAACTTCAATCTCAA+GGG	0.591189	3_1:-77682666	Msa0377280:CDS
AAACATTCACATATTTGAAT+AGG	0.352371	3_1:-77681694	Msa0377280:CDS
AAACTGTAGTGTATTCAGTC+TGG	0.496440	3_1:-77679287	Msa0377280:three_prime_UTR
AAAGACCGTGTACCAAGCAA+CGG	0.670704	3_1:+77680153	None:intergenic
AAATAGGCTAGTGTCAATGG+AGG	0.690398	3_1:-77682102	Msa0377280:intron
AACAATGAGTTCTTTATCAC+AGG	0.423884	3_1:-77682818	Msa0377280:CDS
AACAATGAGTTGTGCAAGTT+GGG	0.394486	3_1:+77682695	None:intergenic
AACTTGGTTTAATGGAAGAC+AGG	0.500267	3_1:-77680079	Msa0377280:intron
AAGAGAAGAAGAAGAAATTT+TGG	0.227958	3_1:-77689158	Msa0377280:CDS
AATGATTACAGTTGGAACAA+AGG	0.561761	3_1:-77683665	Msa0377280:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAACACCAAATGATATACA+AGG	-	chr3_1:77679081-77679100	Msa0377280:three_prime_UTR	30.0%
CCAAATCCTTGTATATCATT+TGG	+	chr3_1:77679090-77679109	None:intergenic	30.0%
CCAAATGATATACAAGGATT+TGG	-	chr3_1:77679087-77679106	Msa0377280:three_prime_UTR	30.0%
TGATGAACAAAAGCTAGAAT+AGG	-	chr3_1:77679128-77679147	Msa0377280:three_prime_UTR	30.0%
GTTAGATACTTAAATGGTGT+GGG	+	chr3_1:77679219-77679238	None:intergenic	30.0%
TGTTAGATACTTAAATGGTG+TGG	+	chr3_1:77679220-77679239	None:intergenic	30.0%
TCAACAAAAAATTTGACGGA+GGG	-	chr3_1:77679439-77679458	Msa0377280:CDS	30.0%
ATTAACGTTGTGCAATTTCA+GGG	-	chr3_1:77679471-77679490	Msa0377280:intron	30.0%
TTGACGAAACTTACAATTTC+AGG	-	chr3_1:77679529-77679548	Msa0377280:intron	30.0%
TGACGAAACTTACAATTTCA+GGG	-	chr3_1:77679530-77679549	Msa0377280:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	77679018	77689220	77679018	ID=Msa0377280;Name=Msa0377280
chr3_1	mRNA	77679018	77689220	77679018	ID=Msa0377280-mRNA-1;Parent=Msa0377280;Name=Msa0377280-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|0.75\|0.76\|0.92\|1\|1\|13\|314\|495
chr3_1	exon	77679018	77679481	77679018	ID=Msa0377280-mRNA-1:exon:18584;Parent=Msa0377280-mRNA-1
chr3_1	exon	77680080	77680197	77680080	ID=Msa0377280-mRNA-1:exon:18583;Parent=Msa0377280-mRNA-1
chr3_1	exon	77680288	77680380	77680288	ID=Msa0377280-mRNA-1:exon:18582;Parent=Msa0377280-mRNA-1
chr3_1	exon	77681629	77681753	77681629	ID=Msa0377280-mRNA-1:exon:18581;Parent=Msa0377280-mRNA-1
chr3_1	exon	77681842	77681928	77681842	ID=Msa0377280-mRNA-1:exon:18580;Parent=Msa0377280-mRNA-1
chr3_1	exon	77682103	77682297	77682103	ID=Msa0377280-mRNA-1:exon:18579;Parent=Msa0377280-mRNA-1
chr3_1	exon	77682659	77682729	77682659	ID=Msa0377280-mRNA-1:exon:18578;Parent=Msa0377280-mRNA-1
chr3_1	exon	77682804	77682896	77682804	ID=Msa0377280-mRNA-1:exon:18577;Parent=Msa0377280-mRNA-1
chr3_1	exon	77683467	77683562	77683467	ID=Msa0377280-mRNA-1:exon:18576;Parent=Msa0377280-mRNA-1
chr3_1	exon	77683666	77683767	77683666	ID=Msa0377280-mRNA-1:exon:18575;Parent=Msa0377280-mRNA-1
chr3_1	exon	77683994	77684077	77683994	ID=Msa0377280-mRNA-1:exon:18574;Parent=Msa0377280-mRNA-1
chr3_1	exon	77684360	77684542	77684360	ID=Msa0377280-mRNA-1:exon:18573;Parent=Msa0377280-mRNA-1
chr3_1	exon	77689130	77689220	77689130	ID=Msa0377280-mRNA-1:exon:18572;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77689130	77689220	77689130	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77684360	77684542	77684360	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77683994	77684077	77683994	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77683666	77683767	77683666	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77683467	77683562	77683467	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77682804	77682896	77682804	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77682659	77682729	77682659	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77682103	77682297	77682103	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77681842	77681928	77681842	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77681629	77681753	77681629	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77680288	77680380	77680288	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77680080	77680197	77680080	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	CDS	77679332	77679481	77679332	ID=Msa0377280-mRNA-1:cds;Parent=Msa0377280-mRNA-1
chr3_1	three_prime_UTR	77679018	77679331	77679018	ID=Msa0377280-mRNA-1:three_prime_utr;Parent=Msa0377280-mRNA-1

Gene Sequence

>Msa0377280

ATGAAGATTGGTGTTGAACAATTCTTCAACCTTCCAATGGAAGAGAAGAAGAAGAAATTTTGGCAAACACCAAATGATATACAAGGATTTGGAGTAAATTCCTTTTTAGAAGTTGATAAGATAAGTAGTTTACCTCAGCAGCCAAAAGTAGGATTTCAACAATATGCAGGTTACATTACAGTTGATGAAATGCAGAAAAGAGCTTTGTTTTACTACTTTGTTGAAGCAGAAGTTGAACCAGCTTCCAAGCCAGTAGTGCTTTGGTTAAATGGAGTGGTTGTTTTGCAACTGGGTTTTAATTTAGGCGGTGATGTTGGTGTTGGTGGTTGTTTGTTAATGGTATTGAAGGTAGGTCTTGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTGGAGCATGGTCCATTCAAACCAACTAAAAATGGTCTTATTAAAAATGATTACAGTTGGAACAAAGTGGCAAACATGCTGTACTTGGAATCACCTGCTGGTGTTGGTTTCTCCTACTCTACTAATGAATCATTCTACGACTCCGTGAACGATGATTTGACAGCAAGGGATAATCTTGTTTTTTTACAACATTGGTTCACTAAATTCTCAGAATACAAAAACAATGAGTTCTTTATCACAGGGGAGAGCTATGCAGGTCACTATGTACCCCAACTTGCACAACTCATTGTTCAAACCAAAAGCAACTTCAATCTCAAGGGAATTGCAATAGGGAATCCTCTTCTGGAATTCAACACAGATTTCAACTCTAGAGCTGAGTATCTCTGGTCTCATGGACTGATATCAGATTCAACCTATGATTCCTTCACAAAAATATGCAACTTTTCACAAATTAGAAGACAATATGCAAGTGGCGCACTTACTACCGTTTGCGCAAGAGTAAATAGGCTAGTGTCAATGGAGATTAGTAGATATATTGATTCGTATGATGTTACTCTTGATGTGTGTCTATCAACAGTAGAACAACAAGCATATGTGCTAACTCAACTGCAAGAGGGAGAGAAGATAGATGTTTGTGTGGAAGATGAAACATTCACATATTTGAATAGGAAAGAAGTGCAAGAAGCTCTTCATGCTAAGCTTGTAGGGATCACCACATGGACCACTTGTAGTGGAGTTCTCAAATATGACATGCAAAATTTAGAGATTCCAACCATATCTATTCTGGGAAAACTTGTTAAGTCAGGTGTAAGAGTTCTTGTATTCAGTGGAGATCAAGATTCAGTATTACCGTTGCTTGGTACACGGTCTTTAGTAAATGGATTAGCCAAAGACTTCGGTTTGAACACAACAGAGTCCTATAGAACTTGGTTTAATGGAAGACAGGTAGCTGGATGGACACAAGTATATGGTGACATGTTATCCTTTGCAACCATAAGAGGAGCAGCTCATGAGGCTCCATTTTCACAACCAGGGAGATCATTGGTGCTGCTAAAGGCATTTTTGGAAGGAAAATCACTTCCAACTATTCTTTGA

Protein sequence

>Msa0377280

MKIGVEQFFNLPMEEKKKKFWQTPNDIQGFGVNSFLEVDKISSLPQQPKVGFQQYAGYITVDEMQKRALFYYFVEAEVEPASKPVVLWLNGVVVLQLGFNLGGDVGVGGCLLMVLKVGLGPGCSSVGAGAFVEHGPFKPTKNGLIKNDYSWNKVANMLYLESPAGVGFSYSTNESFYDSVNDDLTARDNLVFLQHWFTKFSEYKNNEFFITGESYAGHYVPQLAQLIVQTKSNFNLKGIAIGNPLLEFNTDFNSRAEYLWSHGLISDSTYDSFTKICNFSQIRRQYASGALTTVCARVNRLVSMEISRYIDSYDVTLDVCLSTVEQQAYVLTQLQEGEKIDVCVEDETFTYLNRKEVQEALHAKLVGITTWTTCSGVLKYDMQNLEIPTISILGKLVKSGVRVLVFSGDQDSVLPLLGTRSLVNGLAKDFGLNTTESYRTWFNGRQVAGWTQVYGDMLSFATIRGAAHEAPFSQPGRSLVLLKAFLEGKSLPTIL*