Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0763440 | sp|Q8RXF8|MIRO1_ARATH | 64.365 | 362 | 126 | 2 | 43 | 402 | 151 | 511 | 1.29e-152 | 449 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0763440 | G7K1C5 | 94.345 | 336 | 19 | 0 | 61 | 396 | 8 | 343 | 0.0 | 635 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0639610 | Msa0763440 | 0.811414 | 7.084612e-51 | -8.615850e-47 |
Msa0694370 | Msa0763440 | 0.802454 | 5.568060e-49 | -8.615850e-47 |
Msa0763440 | Msa0766630 | 0.804198 | 2.423829e-49 | -8.615850e-47 |
Msa0763440 | Msa1075670 | 0.824273 | 8.825676e-54 | -8.615850e-47 |
Msa0763440 | Msa1114030 | 0.817945 | 2.534635e-52 | -8.615850e-47 |
Msa0763440 | Msa1116260 | 0.801382 | 9.244853e-49 | -8.615850e-47 |
Msa0763440 | Msa1451570 | 0.806153 | 9.444988e-50 | -8.615850e-47 |
Msa0142220 | Msa0763440 | 0.801035 | 1.088544e-48 | -8.615850e-47 |
Msa0188460 | Msa0763440 | 0.814608 | 1.412745e-51 | -8.615850e-47 |
Msa0208090 | Msa0763440 | 0.801780 | 7.660750e-49 | -8.615850e-47 |
Msa0384890 | Msa0763440 | 0.800319 | 1.523683e-48 | -8.615850e-47 |
Msa0270520 | Msa0763440 | 0.814502 | 1.490949e-51 | -8.615850e-47 |
Msa0321310 | Msa0763440 | 0.804688 | 1.915514e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0763440 | MtrunA17_Chr5g0413741 | 76.243 | 362 | 85 | 1 | 43 | 403 | 177 | 538 | 0.0 | 569 |
Msa0763440 | MtrunA17_Chr5g0417151 | 69.830 | 411 | 105 | 3 | 8 | 403 | 76 | 482 | 0.0 | 561 |
Msa0763440 | MtrunA17_Chr1g0191811 | 74.515 | 361 | 92 | 0 | 43 | 403 | 150 | 510 | 0.0 | 555 |
Msa0763440 | MtrunA17_Chr5g0413461 | 95.307 | 277 | 13 | 0 | 120 | 396 | 4 | 280 | 0.0 | 527 |
Msa0763440 | MtrunA17_Chr4g0073381 | 62.022 | 366 | 134 | 1 | 43 | 403 | 91 | 456 | 3.74e-152 | 442 |
Msa0763440 | MtrunA17_Chr4g0073061 | 62.500 | 344 | 129 | 0 | 60 | 403 | 192 | 535 | 7.37e-147 | 430 |
Msa0763440 | MtrunA17_Chr7g0259771 | 52.632 | 361 | 170 | 1 | 43 | 402 | 142 | 502 | 1.92e-134 | 399 |
Msa0763440 | MtrunA17_Chr1g0185591 | 49.861 | 361 | 180 | 1 | 43 | 402 | 146 | 506 | 6.07e-121 | 364 |
Msa0763440 | MtrunA17_Chr5g0413771 | 84.946 | 93 | 14 | 0 | 311 | 403 | 4 | 96 | 1.15e-48 | 165 |
Msa0763440 | MtrunA17_Chr5g0413781 | 59.813 | 107 | 16 | 1 | 165 | 271 | 1 | 80 | 1.03e-31 | 115 |
Msa0763440 | MtrunA17_Chr8g0338031 | 37.162 | 148 | 73 | 6 | 44 | 188 | 182 | 312 | 5.81e-15 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0763440 | AT5G27540.1 | 64.365 | 362 | 126 | 2 | 43 | 402 | 151 | 511 | 1.31e-153 | 449 |
Msa0763440 | AT5G27540.2 | 64.365 | 362 | 126 | 2 | 43 | 402 | 151 | 511 | 1.31e-153 | 449 |
Msa0763440 | AT3G63150.1 | 54.017 | 361 | 165 | 1 | 43 | 402 | 148 | 508 | 3.35e-133 | 396 |
Msa0763440 | AT3G05310.3 | 48.787 | 371 | 176 | 6 | 43 | 402 | 3 | 370 | 1.33e-114 | 344 |
Msa0763440 | AT3G05310.2 | 48.787 | 371 | 176 | 6 | 43 | 402 | 3 | 370 | 3.15e-114 | 343 |
Msa0763440 | AT3G05310.1 | 46.341 | 410 | 199 | 9 | 8 | 402 | 112 | 515 | 1.48e-112 | 343 |
Find 87 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATTATTGAATTACTTTAT+TGG | 0.184131 | 5_2:-22637318 | Msa0763440:CDS |
AAATGAAGCAATTCGTTTCT+TGG | 0.186204 | 5_2:-22638255 | Msa0763440:CDS |
TACAGCATAACGATCTTTAT+TGG | 0.193396 | 5_2:+22637181 | None:intergenic |
CATTATTGAATTACTTTATT+GGG | 0.229123 | 5_2:-22637317 | Msa0763440:CDS |
GTCTTGCAGTGCTTCATCTT+TGG | 0.255049 | 5_2:-22637363 | Msa0763440:CDS |
TAAATGTTGTTAATATTTCT+AGG | 0.256808 | 5_2:-22637160 | Msa0763440:CDS |
TGATGAACTAAATATTTATC+AGG | 0.292558 | 5_2:-22639686 | Msa0763440:intron |
GGATTGTAAGCTTCAGAATA+TGG | 0.299057 | 5_2:+22637206 | None:intergenic |
AAAACAATTCTTCAATTTCA+TGG | 0.310243 | 5_2:+22638078 | None:intergenic |
ATAAAGGAGCTAAGGGATAA+AGG | 0.325366 | 5_2:+22639806 | None:intergenic |
AAGACTCTCCTCGAAATTAT+TGG | 0.328310 | 5_2:+22640124 | None:intergenic |
CTTAGCTCCTTTATTTGATA+AGG | 0.328615 | 5_2:-22639797 | Msa0763440:CDS |
GCTGGCCAACAAGGAGTCTT+TGG | 0.335656 | 5_2:-22636941 | Msa0763440:CDS |
TTCTTGGAGAAAATCTTTGA+TGG | 0.343493 | 5_2:-22638239 | Msa0763440:CDS |
TGTGACTCCTTATCAAATAA+AGG | 0.354806 | 5_2:+22639790 | None:intergenic |
AAGCAATCTATCTACCTTTC+CGG | 0.356000 | 5_2:+22638047 | None:intergenic |
TGGACCGTGCTCAGGAAGTT+TGG | 0.356915 | 5_2:-22638484 | Msa0763440:CDS |
TCTCGCTCATTCACACCTTC+AGG | 0.359435 | 5_2:+22638574 | None:intergenic |
CTTTCTACAGCATCCTTGTA+TGG | 0.371452 | 5_2:+22637812 | None:intergenic |
CGCTTCAAAGCCCGCACAAA+TGG | 0.374170 | 5_2:+22639754 | None:intergenic |
TAAAGGAGCTAAGGGATAAA+GGG | 0.389375 | 5_2:+22639807 | None:intergenic |
GAATGAGCGAGAACTTTCTT+TGG | 0.399185 | 5_2:-22638563 | Msa0763440:CDS |
AAAATCTTTGATGGACTTGA+TGG | 0.415253 | 5_2:-22638230 | Msa0763440:CDS |
AAAATTTCAGATGGTTGAAA+AGG | 0.419671 | 5_2:+22638628 | None:intergenic |
AAACAATTCTTCAATTTCAT+GGG | 0.425296 | 5_2:+22638079 | None:intergenic |
AATCTTTATTGTGGAGAACT+TGG | 0.433354 | 5_2:-22637478 | Msa0763440:CDS |
CTGAAAAGAAACACCTGATC+AGG | 0.439977 | 5_2:+22638406 | None:intergenic |
CTTCATCTTTGGACCTATGA+AGG | 0.441126 | 5_2:-22637352 | Msa0763440:CDS |
ATCTTTGGACCTATGAAGGC+TGG | 0.441340 | 5_2:-22637348 | Msa0763440:CDS |
TGTGGAGAACTTGGTATACA+TGG | 0.444153 | 5_2:-22637469 | Msa0763440:CDS |
GCTGTAGAAAGGAATGCATT+TGG | 0.445495 | 5_2:-22637800 | Msa0763440:CDS |
GCATAACGATCTTTATTGGT+TGG | 0.455192 | 5_2:+22637185 | None:intergenic |
CTTATCAAATAAAGGAGCTA+AGG | 0.455198 | 5_2:+22639798 | None:intergenic |
TTGAGAGAGATTTCTGAAAG+TGG | 0.462680 | 5_2:-22636976 | Msa0763440:CDS |
TTTGAAATGTGCACCTGATC+AGG | 0.462696 | 5_2:-22638419 | Msa0763440:intron |
AAGTTCTCCACAATAAAGAT+TGG | 0.465034 | 5_2:+22637480 | None:intergenic |
TCTAAATCCAATCTTTATTG+TGG | 0.481113 | 5_2:-22637487 | Msa0763440:CDS |
GAGCGAGAACTTTCTTTGGC+AGG | 0.484206 | 5_2:-22638559 | Msa0763440:CDS |
AGAAAACATGGACCGTGCTC+AGG | 0.488609 | 5_2:-22638492 | Msa0763440:CDS |
ACCATGAGTGTTCAGCATAT+AGG | 0.492586 | 5_2:-22639990 | Msa0763440:CDS |
CTTGTATGGATATTCAATCC+AGG | 0.496342 | 5_2:+22637826 | None:intergenic |
AAATGTTGTTAATATTTCTA+GGG | 0.499671 | 5_2:-22637159 | Msa0763440:intron |
TGGAGGCCACGGCACGGATG+AGG | 0.502489 | 5_2:+22640144 | None:intergenic |
TATTTAGTTCATCATCGCTA+AGG | 0.518350 | 5_2:+22639695 | None:intergenic |
GTCGTAGGAGACAATCGAAC+TGG | 0.520109 | 5_2:-22640176 | Msa0763440:CDS |
CTCGAAATTATTGGAGGCCA+CGG | 0.521979 | 5_2:+22640133 | None:intergenic |
AAATGCCCCGTGAGAAAACA+TGG | 0.522627 | 5_2:-22638504 | Msa0763440:CDS |
CATACAAGGATGCTGTAGAA+AGG | 0.525710 | 5_2:-22637811 | Msa0763440:CDS |
TGAGGCCAAAGACTCCTTGT+TGG | 0.527343 | 5_2:+22636936 | None:intergenic |
GAACTTCAGTGCGGAAGCCT+CGG | 0.528410 | 5_2:+22640207 | None:intergenic |
ATAGCAGATGACGGATCACC+AGG | 0.536204 | 5_2:+22637441 | None:intergenic |
TCCTATATGCTGAACACTCA+TGG | 0.537046 | 5_2:+22639989 | None:intergenic |
TTTACAACCAAAATTTCAGA+TGG | 0.537649 | 5_2:+22638619 | None:intergenic |
TATTGAATTACTTTATTGGG+AGG | 0.539716 | 5_2:-22637314 | Msa0763440:intron |
CTCTGTGATCGTGACGGAGA+TGG | 0.541204 | 5_2:-22639721 | Msa0763440:CDS |
CACAAAGCTGCTGGCCAACA+AGG | 0.541656 | 5_2:-22636950 | Msa0763440:CDS |
CATTTGTGCGGGCTTTGAAG+CGG | 0.547065 | 5_2:-22639753 | Msa0763440:CDS |
ATTTAGTTCATCATCGCTAA+GGG | 0.554770 | 5_2:+22639696 | None:intergenic |
ACTAAAACCTCCATTTGTGC+GGG | 0.561359 | 5_2:-22639764 | Msa0763440:CDS |
CATCTGCTATCTGTGTGACT+AGG | 0.561549 | 5_2:-22637428 | Msa0763440:CDS |
GTAGAAAGGAATGCATTTGG+AGG | 0.562875 | 5_2:-22637797 | Msa0763440:CDS |
TTCAAAGCCCGCACAAATGG+AGG | 0.565143 | 5_2:+22639757 | None:intergenic |
CTGGATTGAATATCCATACA+AGG | 0.565186 | 5_2:-22637825 | Msa0763440:CDS |
TTATCAAATAAAGGAGCTAA+GGG | 0.568767 | 5_2:+22639799 | None:intergenic |
TGATCAGGTGCACATTTCAA+AGG | 0.569247 | 5_2:+22638421 | None:intergenic |
CGTGGCCTCCAATAATTTCG+AGG | 0.569786 | 5_2:-22640132 | Msa0763440:CDS |
AAGTGGAGTCACAAAGCTGC+TGG | 0.571063 | 5_2:-22636959 | Msa0763440:CDS |
AACAATTCTTCAATTTCATG+GGG | 0.574861 | 5_2:+22638080 | None:intergenic |
ACTCTCCTCGAAATTATTGG+AGG | 0.578547 | 5_2:+22640127 | None:intergenic |
CACTAAAACCTCCATTTGTG+CGG | 0.579838 | 5_2:-22639765 | Msa0763440:CDS |
GTGGAGAACTTGGTATACAT+GGG | 0.583368 | 5_2:-22637468 | Msa0763440:CDS |
TTTATCCTCTGTGATCGTGA+CGG | 0.586245 | 5_2:-22639727 | Msa0763440:CDS |
CTGCTATCTGTGTGACTAGG+AGG | 0.586265 | 5_2:-22637425 | Msa0763440:CDS |
TTCAGCATATAGGAATAGCC+AGG | 0.586684 | 5_2:-22639980 | Msa0763440:intron |
GAAGTTCGTATTGTTGTCGT+AGG | 0.591014 | 5_2:-22640191 | Msa0763440:CDS |
TTGTATGGATATTCAATCCA+GGG | 0.593125 | 5_2:+22637827 | None:intergenic |
TCCTCTAGGATAAGGTGTTG+CGG | 0.598450 | 5_2:-22638103 | Msa0763440:intron |
ATCAAGCCTCATCCGTGCCG+TGG | 0.603172 | 5_2:-22640150 | Msa0763440:CDS |
AATTATTGGAGGCCACGGCA+CGG | 0.623841 | 5_2:+22640138 | None:intergenic |
CCTCGGTGTACAGAAGCTCT+CGG | 0.628927 | 5_2:+22640224 | None:intergenic |
TCAGGTGCACATTTCAAAGG+TGG | 0.639373 | 5_2:+22638424 | None:intergenic |
ATATCCAAACTTCCTGAGCA+CGG | 0.642415 | 5_2:+22638480 | None:intergenic |
ATCTATCTACCTTTCCGGAG+CGG | 0.645267 | 5_2:+22638052 | None:intergenic |
GTCACACAGATAGCAGATGA+CGG | 0.670220 | 5_2:+22637432 | None:intergenic |
CCGAGAGCTTCTGTACACCG+AGG | 0.768258 | 5_2:-22640224 | Msa0763440:CDS |
CAACAATACGAACTTCAGTG+CGG | 0.780632 | 5_2:+22640198 | None:intergenic |
CATCTCCGTCACGATCACAG+AGG | 0.789829 | 5_2:+22639722 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAATGAAAAATTAAGTTTT+AGG | - | chr5_2:22638201-22638220 | Msa0763440:intron | 10.0% |
!!! | TTTTTTTTTTTTTGTAAATC+TGG | + | chr5_2:22638269-22638288 | None:intergenic | 10.0% |
!!! | AATACACAATTATTATTTTT+TGG | + | chr5_2:22638423-22638442 | None:intergenic | 10.0% |
!!! | AAACTATTTTGCTAAAAAAA+CGG | - | chr5_2:22637650-22637669 | Msa0763440:intron | 15.0% |
!!! | ACTTAATTTTTCATTAAAAC+TGG | + | chr5_2:22638198-22638217 | None:intergenic | 15.0% |
!! | ATAAAGAACACAAAAAAATA+AGG | + | chr5_2:22638761-22638780 | None:intergenic | 15.0% |
!! | CATTATTGAATTACTTTATT+GGG | - | chr5_2:22639813-22639832 | Msa0763440:CDS | 15.0% |
!! | TAAATGTTGTTAATATTTCT+AGG | - | chr5_2:22639970-22639989 | Msa0763440:intron | 15.0% |
!!! | AAATGTTGTTAATATTTCTA+GGG | - | chr5_2:22639971-22639990 | Msa0763440:intron | 15.0% |
!! | CAAAACTATAAATCATAAAT+TGG | + | chr5_2:22640107-22640126 | None:intergenic | 15.0% |
!! | TGATGAACTAAATATTTATC+AGG | - | chr5_2:22637444-22637463 | Msa0763440:CDS | 20.0% |
!!! | AAACTTTTATTCAATCTACA+AGG | + | chr5_2:22637547-22637566 | None:intergenic | 20.0% |
!! | TCAAAATGGTTATAATTTAC+CGG | + | chr5_2:22637601-22637620 | None:intergenic | 20.0% |
!!! | TATAACCATTTTGAAAAATC+CGG | - | chr5_2:22637607-22637626 | Msa0763440:intron | 20.0% |
!!! | GATTTTTTAAATAAGTTCAC+CGG | + | chr5_2:22637629-22637648 | None:intergenic | 20.0% |
!!! | GTTTTTTTAGCAAAATAGTT+TGG | + | chr5_2:22637651-22637670 | None:intergenic | 20.0% |
!! | TTATCTTATTCTATTCTCAT+TGG | - | chr5_2:22638823-22638842 | Msa0763440:intron | 20.0% |
!! | AAACAATTCTTCAATTTCAT+GGG | + | chr5_2:22639054-22639073 | None:intergenic | 20.0% |
!! | AAAACAATTCTTCAATTTCA+TGG | + | chr5_2:22639055-22639074 | None:intergenic | 20.0% |
!! | TCATAAATCATGTAAAACTA+AGG | + | chr5_2:22639520-22639539 | None:intergenic | 20.0% |
!! | GCATTATTGAATTACTTTAT+TGG | - | chr5_2:22639812-22639831 | Msa0763440:CDS | 20.0% |
!!! | ATGATTTATAGTTTTGTTGT+AGG | - | chr5_2:22640111-22640130 | Msa0763440:intron | 20.0% |
! | ATCTAGCAGATCAAAATTAT+TGG | + | chr5_2:22637038-22637057 | None:intergenic | 25.0% |
! | TAGCATAAATAAAAGATACC+TGG | + | chr5_2:22637171-22637190 | None:intergenic | 25.0% |
! | TATTGTAATTTCCTTGTTGA+AGG | - | chr5_2:22637267-22637286 | Msa0763440:intron | 25.0% |
! | TTATCAAATAAAGGAGCTAA+GGG | + | chr5_2:22637334-22637353 | None:intergenic | 25.0% |
! | ACCAGGAAAATAAAAAAAAG+AGG | - | chr5_2:22637938-22637957 | Msa0763440:intron | 25.0% |
!!! | TCCTCTTTTTTTTATTTTCC+TGG | + | chr5_2:22637942-22637961 | None:intergenic | 25.0% |
!!! | TGAAAAATTAAGTTTTAGGC+AGG | - | chr5_2:22638205-22638224 | Msa0763440:intron | 25.0% |
!!! | ACTAAACCAAATTTTTGGTT+TGG | + | chr5_2:22638320-22638339 | None:intergenic | 25.0% |
!! | ACCAAAAATTTGGTTTAGTT+TGG | - | chr5_2:22638321-22638340 | Msa0763440:intron | 25.0% |
!! | ACCAAACTAAACCAAATTTT+TGG | + | chr5_2:22638325-22638344 | None:intergenic | 25.0% |
!!! | AAATTTGGTTTAGTTTGGTT+TGG | - | chr5_2:22638326-22638345 | Msa0763440:intron | 25.0% |
! | AAAATTTCAGATGGTTGAAA+AGG | + | chr5_2:22638505-22638524 | None:intergenic | 25.0% |
!!! | TTTTCAACCATCTGAAATTT+TGG | - | chr5_2:22638504-22638523 | Msa0763440:CDS | 25.0% |
! | TTTACAACCAAAATTTCAGA+TGG | + | chr5_2:22638514-22638533 | None:intergenic | 25.0% |
!!! | TGAAATTTTGGTTGTAAAGA+AGG | - | chr5_2:22638516-22638535 | Msa0763440:CDS | 25.0% |
! | ATGAAAATGTGAAATTAGTC+CGG | + | chr5_2:22638955-22638974 | None:intergenic | 25.0% |
! | GATATTACCCAAAAATGATT+GGG | + | chr5_2:22638985-22639004 | None:intergenic | 25.0% |
! | AGATATTACCCAAAAATGAT+TGG | + | chr5_2:22638986-22639005 | None:intergenic | 25.0% |
! | AACAATTCTTCAATTTCATG+GGG | + | chr5_2:22639053-22639072 | None:intergenic | 25.0% |
! | AAATGTACATACATGCTTTA+AGG | - | chr5_2:22639135-22639154 | Msa0763440:intron | 25.0% |
! | ATGATTTATGACTATATGTC+TGG | - | chr5_2:22639529-22639548 | Msa0763440:intron | 25.0% |
! | TCTAAATCCAATCTTTATTG+TGG | - | chr5_2:22639643-22639662 | Msa0763440:intron | 25.0% |
! | TATTGAATTACTTTATTGGG+AGG | - | chr5_2:22639816-22639835 | Msa0763440:CDS | 25.0% |
! | GAATACATCAAATAAGACTT+TGG | + | chr5_2:22640058-22640077 | None:intergenic | 25.0% |
AGCAGATCAAAATTATTGGA+GGG | + | chr5_2:22637034-22637053 | None:intergenic | 30.0% | |
TAGCAGATCAAAATTATTGG+AGG | + | chr5_2:22637035-22637054 | None:intergenic | 30.0% | |
ATGAAAATCAGCAGGTAAAT+CGG | - | chr5_2:22637056-22637075 | Msa0763440:intron | 30.0% | |
CTTATCAAATAAAGGAGCTA+AGG | + | chr5_2:22637335-22637354 | None:intergenic | 30.0% | |
! | CTTAGCTCCTTTATTTGATA+AGG | - | chr5_2:22637333-22637352 | Msa0763440:CDS | 30.0% |
TGTGACTCCTTATCAAATAA+AGG | + | chr5_2:22637343-22637362 | None:intergenic | 30.0% | |
! | ATTTAGTTCATCATCGCTAA+GGG | + | chr5_2:22637437-22637456 | None:intergenic | 30.0% |
! | TATTTAGTTCATCATCGCTA+AGG | + | chr5_2:22637438-22637457 | None:intergenic | 30.0% |
CGTATTAGATTTCAAAACTG+TGG | - | chr5_2:22637487-22637506 | Msa0763440:CDS | 30.0% | |
TTTAGCTATGCTCAAAAAAC+CGG | - | chr5_2:22637579-22637598 | Msa0763440:intron | 30.0% | |
AAAAGCGAATTCAGCATATT+TGG | + | chr5_2:22638046-22638065 | None:intergenic | 30.0% | |
GCAAAGGAGTAAATCAATTT+GGG | + | chr5_2:22638105-22638124 | None:intergenic | 30.0% | |
TGCAAAGGAGTAAATCAATT+TGG | + | chr5_2:22638106-22638125 | None:intergenic | 30.0% | |
ACTGAACCAAACCAAAAATT+TGG | - | chr5_2:22638311-22638330 | Msa0763440:intron | 30.0% | |
ATGGTAGGTTATATATGTTG+TGG | - | chr5_2:22638374-22638393 | Msa0763440:intron | 30.0% | |
TAGGTTATATATGTTGTGGT+GGG | - | chr5_2:22638378-22638397 | Msa0763440:intron | 30.0% | |
AATCTAACTTAACTCTCTAC+AGG | - | chr5_2:22638462-22638481 | Msa0763440:CDS | 30.0% | |
AAATGAAGCAATTCGTTTCT+TGG | - | chr5_2:22638875-22638894 | Msa0763440:intron | 30.0% | |
TTCTTGGAGAAAATCTTTGA+TGG | - | chr5_2:22638891-22638910 | Msa0763440:intron | 30.0% | |
!! | AAAATCTTTGATGGACTTGA+TGG | - | chr5_2:22638900-22638919 | Msa0763440:intron | 30.0% |
TGAAAATGTGAAATTAGTCC+GGG | + | chr5_2:22638954-22638973 | None:intergenic | 30.0% | |
TTGTATGGATATTCAATCCA+GGG | + | chr5_2:22639306-22639325 | None:intergenic | 30.0% | |
AATGTTTGTAGAAAAGTGGT+GGG | - | chr5_2:22639439-22639458 | Msa0763440:intron | 30.0% | |
AAGTTCTCCACAATAAAGAT+TGG | + | chr5_2:22639653-22639672 | None:intergenic | 30.0% | |
AATCTTTATTGTGGAGAACT+TGG | - | chr5_2:22639652-22639671 | Msa0763440:intron | 30.0% | |
ATAATTAAAGACGTGTTACC+AGG | + | chr5_2:22639866-22639885 | None:intergenic | 30.0% | |
GTTGTTGAAATTCATAATGC+AGG | - | chr5_2:22639901-22639920 | Msa0763440:intron | 30.0% | |
TACAGCATAACGATCTTTAT+TGG | + | chr5_2:22639952-22639971 | None:intergenic | 30.0% | |
! | GATGTATTCATTTTGTGTGT+TGG | - | chr5_2:22640069-22640088 | Msa0763440:intron | 30.0% |
AAGACTCTCCTCGAAATTAT+TGG | + | chr5_2:22637009-22637028 | None:intergenic | 35.0% | |
! | TAGTGACATCACCTGTTTTA+CGG | + | chr5_2:22637089-22637108 | None:intergenic | 35.0% |
TAAAGGAGCTAAGGGATAAA+GGG | + | chr5_2:22637326-22637345 | None:intergenic | 35.0% | |
ATAAAGGAGCTAAGGGATAA+AGG | + | chr5_2:22637327-22637346 | None:intergenic | 35.0% | |
GGTGTCAGACTATTATATAC+TGG | + | chr5_2:22637526-22637545 | None:intergenic | 35.0% | |
!! | GTTCACCGGATTTTTCAAAA+TGG | + | chr5_2:22637615-22637634 | None:intergenic | 35.0% |
AAATAGAAGAGAAAGTGACC+AGG | - | chr5_2:22637921-22637940 | Msa0763440:intron | 35.0% | |
! | TTAAAACTGGTTTCTTGCCA+GGG | + | chr5_2:22638185-22638204 | None:intergenic | 35.0% |
! | ATTAAAACTGGTTTCTTGCC+AGG | + | chr5_2:22638186-22638205 | None:intergenic | 35.0% |
GTAGGTTATATATGTTGTGG+TGG | - | chr5_2:22638377-22638396 | Msa0763440:intron | 35.0% | |
!!! | GGGCATTTTTTCTAAGAAGA+GGG | + | chr5_2:22638614-22638633 | None:intergenic | 35.0% |
AGTTATTTGTGCAAATGACC+CGG | - | chr5_2:22638933-22638952 | Msa0763440:intron | 35.0% | |
CCTAGAGGATGGAAAATATA+TGG | + | chr5_2:22639016-22639035 | None:intergenic | 35.0% | |
! | CCATATATTTTCCATCCTCT+AGG | - | chr5_2:22639013-22639032 | Msa0763440:intron | 35.0% |
!!! | ATTTTCCATCCTCTAGGATA+AGG | - | chr5_2:22639019-22639038 | Msa0763440:intron | 35.0% |
AAGCAATCTATCTACCTTTC+CGG | + | chr5_2:22639086-22639105 | None:intergenic | 35.0% | |
!! | ACATACATGCTTTAAGGATG+TGG | - | chr5_2:22639141-22639160 | Msa0763440:intron | 35.0% |
TCCTAATTGACATTCAGACT+CGG | + | chr5_2:22639239-22639258 | None:intergenic | 35.0% | |
TGAATGTCAATTAGGACTCT+TGG | - | chr5_2:22639243-22639262 | Msa0763440:intron | 35.0% | |
CTTGTATGGATATTCAATCC+AGG | + | chr5_2:22639307-22639326 | None:intergenic | 35.0% | |
CTGGATTGAATATCCATACA+AGG | - | chr5_2:22639305-22639324 | Msa0763440:intron | 35.0% | |
! | ACTTGATGCATTTTTGTCAG+AGG | - | chr5_2:22639362-22639381 | Msa0763440:intron | 35.0% |
TCAACAAATCACAAGGAAGA+GGG | + | chr5_2:22639417-22639436 | None:intergenic | 35.0% | |
ACATTGCTCAACAAATCACA+AGG | + | chr5_2:22639424-22639443 | None:intergenic | 35.0% | |
GAGCAATGTTTGTAGAAAAG+TGG | - | chr5_2:22639435-22639454 | Msa0763440:intron | 35.0% | |
CAATGTTTGTAGAAAAGTGG+TGG | - | chr5_2:22639438-22639457 | Msa0763440:intron | 35.0% | |
! | ATTATGTGTTTTCCGAACAG+TGG | - | chr5_2:22639606-22639625 | Msa0763440:intron | 35.0% |
! | TTATGTGTTTTCCGAACAGT+GGG | - | chr5_2:22639607-22639626 | Msa0763440:intron | 35.0% |
GGATTGTAAGCTTCAGAATA+TGG | + | chr5_2:22639927-22639946 | None:intergenic | 35.0% | |
GCATAACGATCTTTATTGGT+TGG | + | chr5_2:22639948-22639967 | None:intergenic | 35.0% | |
! | TAAGACTTTGGTGTGAGAAA+AGG | + | chr5_2:22640046-22640065 | None:intergenic | 35.0% |
! | TTGAGAGAGATTTCTGAAAG+TGG | - | chr5_2:22640154-22640173 | Msa0763440:CDS | 35.0% |
AAAAACTGCAATGTCACATG+AGG | + | chr5_2:22640215-22640234 | None:intergenic | 35.0% | |
! | TTGCAGTTTTTGTTCATGAC+AGG | - | chr5_2:22640224-22640243 | Msa0763440:CDS | 35.0% |
CAACAATACGAACTTCAGTG+CGG | + | chr5_2:22636935-22636954 | None:intergenic | 40.0% | |
GAAGTTCGTATTGTTGTCGT+AGG | - | chr5_2:22636939-22636958 | Msa0763440:CDS | 40.0% | |
ACTCTCCTCGAAATTATTGG+AGG | + | chr5_2:22637006-22637025 | None:intergenic | 40.0% | |
TCTGCTAGATGAAAATCAGC+AGG | - | chr5_2:22637048-22637067 | Msa0763440:intron | 40.0% | |
ACCATGAGTGTTCAGCATAT+AGG | - | chr5_2:22637140-22637159 | Msa0763440:intron | 40.0% | |
TCCTATATGCTGAACACTCA+TGG | + | chr5_2:22637144-22637163 | None:intergenic | 40.0% | |
TTCAGCATATAGGAATAGCC+AGG | - | chr5_2:22637150-22637169 | Msa0763440:intron | 40.0% | |
AGCTTCAAAGACCTTCAACA+AGG | + | chr5_2:22637281-22637300 | None:intergenic | 40.0% | |
CACTAAAACCTCCATTTGTG+CGG | - | chr5_2:22637365-22637384 | Msa0763440:CDS | 40.0% | |
ACTAAAACCTCCATTTGTGC+GGG | - | chr5_2:22637366-22637385 | Msa0763440:CDS | 40.0% | |
TTTATCCTCTGTGATCGTGA+CGG | - | chr5_2:22637403-22637422 | Msa0763440:CDS | 40.0% | |
GCGACAGTGACATGATTAAT+TGG | + | chr5_2:22637707-22637726 | None:intergenic | 40.0% | |
!! | AAAAAGAGGAGCACTGTACA+TGG | - | chr5_2:22637952-22637971 | Msa0763440:intron | 40.0% |
AGAGAAAACAACGATGCAAG+TGG | - | chr5_2:22637981-22638000 | Msa0763440:intron | 40.0% | |
TGATTTACTCCTTTGCATGC+TGG | - | chr5_2:22638109-22638128 | Msa0763440:intron | 40.0% | |
CTGGTTTCTCAACAAGAGAT+AGG | - | chr5_2:22638128-22638147 | Msa0763440:intron | 40.0% | |
! | TAAAACTGGTTTCTTGCCAG+GGG | + | chr5_2:22638184-22638203 | None:intergenic | 40.0% |
!!! | GTTCTAACCCAGTTTTGAAC+TGG | - | chr5_2:22638235-22638254 | Msa0763440:CDS | 40.0% |
AACCATGCACACTTGTGTTA+TGG | - | chr5_2:22638355-22638374 | Msa0763440:intron | 40.0% | |
TACCATAACACAAGTGTGCA+TGG | + | chr5_2:22638360-22638379 | None:intergenic | 40.0% | |
ATGCACACTTGTGTTATGGT+AGG | - | chr5_2:22638359-22638378 | Msa0763440:intron | 40.0% | |
GTGCGAAAAAAATTGCCTGA+AGG | - | chr5_2:22638541-22638560 | Msa0763440:CDS | 40.0% | |
GAATGAGCGAGAACTTTCTT+TGG | - | chr5_2:22638567-22638586 | Msa0763440:CDS | 40.0% | |
!!! | GGGGCATTTTTTCTAAGAAG+AGG | + | chr5_2:22638615-22638634 | None:intergenic | 40.0% |
ATATCCAAACTTCCTGAGCA+CGG | + | chr5_2:22638653-22638672 | None:intergenic | 40.0% | |
TGATCAGGTGCACATTTCAA+AGG | + | chr5_2:22638712-22638731 | None:intergenic | 40.0% | |
! | TTTGAAATGTGCACCTGATC+AGG | - | chr5_2:22638711-22638730 | Msa0763440:intron | 40.0% |
CTGAAAAGAAACACCTGATC+AGG | + | chr5_2:22638727-22638746 | None:intergenic | 40.0% | |
!! | TGCTGCTTCCCAATCATTTT+TGG | - | chr5_2:22638974-22638993 | Msa0763440:intron | 40.0% |
!! | GCTGCTTCCCAATCATTTTT+GGG | - | chr5_2:22638975-22638994 | Msa0763440:intron | 40.0% |
! | AGAATTGTTTTCTACCGCTC+CGG | - | chr5_2:22639064-22639083 | Msa0763440:intron | 40.0% |
CCTAATTGACATTCAGACTC+GGG | + | chr5_2:22639238-22639257 | None:intergenic | 40.0% | |
CTTTCTACAGCATCCTTGTA+TGG | + | chr5_2:22639321-22639340 | None:intergenic | 40.0% | |
CATACAAGGATGCTGTAGAA+AGG | - | chr5_2:22639319-22639338 | Msa0763440:intron | 40.0% | |
GCTGTAGAAAGGAATGCATT+TGG | - | chr5_2:22639330-22639349 | Msa0763440:intron | 40.0% | |
GTAGAAAGGAATGCATTTGG+AGG | - | chr5_2:22639333-22639352 | Msa0763440:intron | 40.0% | |
CTCAACAAATCACAAGGAAG+AGG | + | chr5_2:22639418-22639437 | None:intergenic | 40.0% | |
TGTGGAGAACTTGGTATACA+TGG | - | chr5_2:22639661-22639680 | Msa0763440:intron | 40.0% | |
GTGGAGAACTTGGTATACAT+GGG | - | chr5_2:22639662-22639681 | Msa0763440:intron | 40.0% | |
! | TTGGTATACATGGGTTTTCC+TGG | - | chr5_2:22639671-22639690 | Msa0763440:intron | 40.0% |
CTTCATCTTTGGACCTATGA+AGG | - | chr5_2:22639778-22639797 | Msa0763440:CDS | 40.0% | |
AGTTGTTACCTTGAGATTCC+TGG | - | chr5_2:22639845-22639864 | Msa0763440:intron | 40.0% | |
CTCGAAATTATTGGAGGCCA+CGG | + | chr5_2:22637000-22637019 | None:intergenic | 45.0% | |
GTTGAGAAACCAGCATGCAA+AGG | + | chr5_2:22638121-22638140 | None:intergenic | 45.0% | |
GTGCAGTCCAGTTCAAAACT+GGG | + | chr5_2:22638245-22638264 | None:intergenic | 45.0% | |
TGTGCAGTCCAGTTCAAAAC+TGG | + | chr5_2:22638246-22638265 | None:intergenic | 45.0% | |
AAATGCCCCGTGAGAAAACA+TGG | - | chr5_2:22638626-22638645 | Msa0763440:CDS | 45.0% | |
TCAGGTGCACATTTCAAAGG+TGG | + | chr5_2:22638709-22638728 | None:intergenic | 45.0% | |
CAACACCTTATCCTAGAGGA+TGG | + | chr5_2:22639027-22639046 | None:intergenic | 45.0% | |
!! | TCCTCTAGGATAAGGTGTTG+CGG | - | chr5_2:22639027-22639046 | Msa0763440:intron | 45.0% |
ATCTATCTACCTTTCCGGAG+CGG | + | chr5_2:22639081-22639100 | None:intergenic | 45.0% | |
CCCGAGTCTGAATGTCAATT+AGG | - | chr5_2:22639235-22639254 | Msa0763440:intron | 45.0% | |
!! | TGACTTTTGATTGCAGTCCC+TGG | - | chr5_2:22639286-22639305 | Msa0763440:intron | 45.0% |
!! | AGAAAAGTGGTGGGCTTCTA+TGG | - | chr5_2:22639448-22639467 | Msa0763440:intron | 45.0% |
GTCACACAGATAGCAGATGA+CGG | + | chr5_2:22639701-22639720 | None:intergenic | 45.0% | |
CATCTGCTATCTGTGTGACT+AGG | - | chr5_2:22639702-22639721 | Msa0763440:CDS | 45.0% | |
GTCTTGCAGTGCTTCATCTT+TGG | - | chr5_2:22639767-22639786 | Msa0763440:CDS | 45.0% | |
ATCTTTGGACCTATGAAGGC+TGG | - | chr5_2:22639782-22639801 | Msa0763440:CDS | 45.0% | |
! | GCAGATTTTCCAGCCTTCAT+AGG | + | chr5_2:22639794-22639813 | None:intergenic | 45.0% |
ACGTGTTACCAGGAATCTCA+AGG | + | chr5_2:22639856-22639875 | None:intergenic | 45.0% | |
!! | TTAAAATAAGATTTAAAAAA+CGG | + | chr5_2:22637210-22637229 | None:intergenic | 5.0% |
!!! | TTACTTATTTTAATTTTTTT+GGG | + | chr5_2:22637775-22637794 | None:intergenic | 5.0% |
!!! | TTTACTTATTTTAATTTTTT+TGG | + | chr5_2:22637776-22637795 | None:intergenic | 5.0% |
GTCGTAGGAGACAATCGAAC+TGG | - | chr5_2:22636954-22636973 | Msa0763440:CDS | 50.0% | |
AATTATTGGAGGCCACGGCA+CGG | + | chr5_2:22636995-22637014 | None:intergenic | 50.0% | |
CGTGGCCTCCAATAATTTCG+AGG | - | chr5_2:22636998-22637017 | Msa0763440:CDS | 50.0% | |
TCGGCATGTGACCGTAAAAC+AGG | - | chr5_2:22637075-22637094 | Msa0763440:intron | 50.0% | |
TTCAAAGCCCGCACAAATGG+AGG | + | chr5_2:22637376-22637395 | None:intergenic | 50.0% | |
!! | CATTTGTGCGGGCTTTGAAG+CGG | - | chr5_2:22637377-22637396 | Msa0763440:CDS | 50.0% |
CAATAGAGAGTTTCCACCCC+TGG | - | chr5_2:22638165-22638184 | Msa0763440:intron | 50.0% | |
TCTCGCTCATTCACACCTTC+AGG | + | chr5_2:22638559-22638578 | None:intergenic | 50.0% | |
GAGCGAGAACTTTCTTTGGC+AGG | - | chr5_2:22638571-22638590 | Msa0763440:CDS | 50.0% | |
! | ACGGTCCATGTTTTCTCACG+GGG | + | chr5_2:22638634-22638653 | None:intergenic | 50.0% |
! | CACGGTCCATGTTTTCTCAC+GGG | + | chr5_2:22638635-22638654 | None:intergenic | 50.0% |
! | GCACGGTCCATGTTTTCTCA+CGG | + | chr5_2:22638636-22638655 | None:intergenic | 50.0% |
AGAAAACATGGACCGTGCTC+AGG | - | chr5_2:22638638-22638657 | Msa0763440:CDS | 50.0% | |
! | TGTTTTCTACCGCTCCGGAA+AGG | - | chr5_2:22639069-22639088 | Msa0763440:intron | 50.0% |
TGTCATGAGTGCCCACTGTT+CGG | + | chr5_2:22639621-22639640 | None:intergenic | 50.0% | |
!! | ATAGCAGATGACGGATCACC+AGG | + | chr5_2:22639692-22639711 | None:intergenic | 50.0% |
CTGCTATCTGTGTGACTAGG+AGG | - | chr5_2:22639705-22639724 | Msa0763440:CDS | 50.0% | |
AAGTGGAGTCACAAAGCTGC+TGG | - | chr5_2:22640171-22640190 | Msa0763440:CDS | 50.0% | |
TGAGGCCAAAGACTCCTTGT+TGG | + | chr5_2:22640197-22640216 | None:intergenic | 50.0% | |
! | CCTCGGTGTACAGAAGCTCT+CGG | + | chr5_2:22636909-22636928 | None:intergenic | 55.0% |
GAACTTCAGTGCGGAAGCCT+CGG | + | chr5_2:22636926-22636945 | None:intergenic | 55.0% | |
CGCTTCAAAGCCCGCACAAA+TGG | + | chr5_2:22637379-22637398 | None:intergenic | 55.0% | |
CATCTCCGTCACGATCACAG+AGG | + | chr5_2:22637411-22637430 | None:intergenic | 55.0% | |
! | CTCTGTGATCGTGACGGAGA+TGG | - | chr5_2:22637409-22637428 | Msa0763440:CDS | 55.0% |
!! | AGGAGCACTGTACATGGCTG+TGG | - | chr5_2:22637958-22637977 | Msa0763440:intron | 55.0% |
! | AACTGGTTTCTTGCCAGGGG+TGG | + | chr5_2:22638181-22638200 | None:intergenic | 55.0% |
TGGACCGTGCTCAGGAAGTT+TGG | - | chr5_2:22638646-22638665 | Msa0763440:CDS | 55.0% | |
GCCGCAACACCTTATCCTAG+AGG | + | chr5_2:22639031-22639050 | None:intergenic | 55.0% | |
CACAAAGCTGCTGGCCAACA+AGG | - | chr5_2:22640180-22640199 | Msa0763440:CDS | 55.0% | |
GCTGGCCAACAAGGAGTCTT+TGG | - | chr5_2:22640189-22640208 | Msa0763440:CDS | 55.0% | |
CCGAGAGCTTCTGTACACCG+AGG | - | chr5_2:22636906-22636925 | Msa0763440:CDS | 60.0% | |
ATCAAGCCTCATCCGTGCCG+TGG | - | chr5_2:22636980-22636999 | Msa0763440:CDS | 60.0% | |
TGGAGGCCACGGCACGGATG+AGG | + | chr5_2:22636989-22637008 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 22636903 | 22640249 | 22636903 | ID=Msa0763440;Name=Msa0763440 |
chr5_2 | mRNA | 22636903 | 22640249 | 22636903 | ID=Msa0763440-mRNA-1;Parent=Msa0763440;Name=Msa0763440-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0|0|0|0.8|1|1|10|0|403 |
chr5_2 | exon | 22640124 | 22640249 | 22640124 | ID=Msa0763440-mRNA-1:exon:9317;Parent=Msa0763440-mRNA-1 |
chr5_2 | exon | 22639981 | 22640034 | 22639981 | ID=Msa0763440-mRNA-1:exon:9316;Parent=Msa0763440-mRNA-1 |
chr5_2 | exon | 22639687 | 22639863 | 22639687 | ID=Msa0763440-mRNA-1:exon:9315;Parent=Msa0763440-mRNA-1 |
chr5_2 | exon | 22638420 | 22638668 | 22638420 | ID=Msa0763440-mRNA-1:exon:9314;Parent=Msa0763440-mRNA-1 |
chr5_2 | exon | 22638223 | 22638291 | 22638223 | ID=Msa0763440-mRNA-1:exon:9313;Parent=Msa0763440-mRNA-1 |
chr5_2 | exon | 22638062 | 22638117 | 22638062 | ID=Msa0763440-mRNA-1:exon:9312;Parent=Msa0763440-mRNA-1 |
chr5_2 | exon | 22637769 | 22637850 | 22637769 | ID=Msa0763440-mRNA-1:exon:9311;Parent=Msa0763440-mRNA-1 |
chr5_2 | exon | 22637315 | 22637526 | 22637315 | ID=Msa0763440-mRNA-1:exon:9310;Parent=Msa0763440-mRNA-1 |
chr5_2 | exon | 22637160 | 22637229 | 22637160 | ID=Msa0763440-mRNA-1:exon:9309;Parent=Msa0763440-mRNA-1 |
chr5_2 | exon | 22636903 | 22637019 | 22636903 | ID=Msa0763440-mRNA-1:exon:9308;Parent=Msa0763440-mRNA-1 |
chr5_2 | CDS | 22640124 | 22640249 | 22640124 | ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1 |
chr5_2 | CDS | 22639981 | 22640034 | 22639981 | ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1 |
chr5_2 | CDS | 22639687 | 22639863 | 22639687 | ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1 |
chr5_2 | CDS | 22638420 | 22638668 | 22638420 | ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1 |
chr5_2 | CDS | 22638223 | 22638291 | 22638223 | ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1 |
chr5_2 | CDS | 22638062 | 22638117 | 22638062 | ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1 |
chr5_2 | CDS | 22637769 | 22637850 | 22637769 | ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1 |
chr5_2 | CDS | 22637315 | 22637526 | 22637315 | ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1 |
chr5_2 | CDS | 22637160 | 22637229 | 22637160 | ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1 |
chr5_2 | CDS | 22636903 | 22637019 | 22636903 | ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1 |
Gene Sequence |
Protein sequence |