AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0763440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0763440 MtrunA17_Chr5g0413741 76.243 362 85 1 43 403 177 538 0.0 569
Msa0763440 MtrunA17_Chr5g0417151 69.830 411 105 3 8 403 76 482 0.0 561
Msa0763440 MtrunA17_Chr1g0191811 74.515 361 92 0 43 403 150 510 0.0 555
Msa0763440 MtrunA17_Chr5g0413461 95.307 277 13 0 120 396 4 280 0.0 527
Msa0763440 MtrunA17_Chr4g0073381 62.022 366 134 1 43 403 91 456 3.74e-152 442
Msa0763440 MtrunA17_Chr4g0073061 62.500 344 129 0 60 403 192 535 7.37e-147 430
Msa0763440 MtrunA17_Chr7g0259771 52.632 361 170 1 43 402 142 502 1.92e-134 399
Msa0763440 MtrunA17_Chr1g0185591 49.861 361 180 1 43 402 146 506 6.07e-121 364
Msa0763440 MtrunA17_Chr5g0413771 84.946 93 14 0 311 403 4 96 1.15e-48 165
Msa0763440 MtrunA17_Chr5g0413781 59.813 107 16 1 165 271 1 80 1.03e-31 115
Msa0763440 MtrunA17_Chr8g0338031 37.162 148 73 6 44 188 182 312 5.81e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0763440 AT5G27540.1 64.365 362 126 2 43 402 151 511 1.31e-153 449
Msa0763440 AT5G27540.2 64.365 362 126 2 43 402 151 511 1.31e-153 449
Msa0763440 AT3G63150.1 54.017 361 165 1 43 402 148 508 3.35e-133 396
Msa0763440 AT3G05310.3 48.787 371 176 6 43 402 3 370 1.33e-114 344
Msa0763440 AT3G05310.2 48.787 371 176 6 43 402 3 370 3.15e-114 343
Msa0763440 AT3G05310.1 46.341 410 199 9 8 402 112 515 1.48e-112 343

Find 87 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTATTGAATTACTTTAT+TGG 0.184131 5_2:-22637318 Msa0763440:CDS
AAATGAAGCAATTCGTTTCT+TGG 0.186204 5_2:-22638255 Msa0763440:CDS
TACAGCATAACGATCTTTAT+TGG 0.193396 5_2:+22637181 None:intergenic
CATTATTGAATTACTTTATT+GGG 0.229123 5_2:-22637317 Msa0763440:CDS
GTCTTGCAGTGCTTCATCTT+TGG 0.255049 5_2:-22637363 Msa0763440:CDS
TAAATGTTGTTAATATTTCT+AGG 0.256808 5_2:-22637160 Msa0763440:CDS
TGATGAACTAAATATTTATC+AGG 0.292558 5_2:-22639686 Msa0763440:intron
GGATTGTAAGCTTCAGAATA+TGG 0.299057 5_2:+22637206 None:intergenic
AAAACAATTCTTCAATTTCA+TGG 0.310243 5_2:+22638078 None:intergenic
ATAAAGGAGCTAAGGGATAA+AGG 0.325366 5_2:+22639806 None:intergenic
AAGACTCTCCTCGAAATTAT+TGG 0.328310 5_2:+22640124 None:intergenic
CTTAGCTCCTTTATTTGATA+AGG 0.328615 5_2:-22639797 Msa0763440:CDS
GCTGGCCAACAAGGAGTCTT+TGG 0.335656 5_2:-22636941 Msa0763440:CDS
TTCTTGGAGAAAATCTTTGA+TGG 0.343493 5_2:-22638239 Msa0763440:CDS
TGTGACTCCTTATCAAATAA+AGG 0.354806 5_2:+22639790 None:intergenic
AAGCAATCTATCTACCTTTC+CGG 0.356000 5_2:+22638047 None:intergenic
TGGACCGTGCTCAGGAAGTT+TGG 0.356915 5_2:-22638484 Msa0763440:CDS
TCTCGCTCATTCACACCTTC+AGG 0.359435 5_2:+22638574 None:intergenic
CTTTCTACAGCATCCTTGTA+TGG 0.371452 5_2:+22637812 None:intergenic
CGCTTCAAAGCCCGCACAAA+TGG 0.374170 5_2:+22639754 None:intergenic
TAAAGGAGCTAAGGGATAAA+GGG 0.389375 5_2:+22639807 None:intergenic
GAATGAGCGAGAACTTTCTT+TGG 0.399185 5_2:-22638563 Msa0763440:CDS
AAAATCTTTGATGGACTTGA+TGG 0.415253 5_2:-22638230 Msa0763440:CDS
AAAATTTCAGATGGTTGAAA+AGG 0.419671 5_2:+22638628 None:intergenic
AAACAATTCTTCAATTTCAT+GGG 0.425296 5_2:+22638079 None:intergenic
AATCTTTATTGTGGAGAACT+TGG 0.433354 5_2:-22637478 Msa0763440:CDS
CTGAAAAGAAACACCTGATC+AGG 0.439977 5_2:+22638406 None:intergenic
CTTCATCTTTGGACCTATGA+AGG 0.441126 5_2:-22637352 Msa0763440:CDS
ATCTTTGGACCTATGAAGGC+TGG 0.441340 5_2:-22637348 Msa0763440:CDS
TGTGGAGAACTTGGTATACA+TGG 0.444153 5_2:-22637469 Msa0763440:CDS
GCTGTAGAAAGGAATGCATT+TGG 0.445495 5_2:-22637800 Msa0763440:CDS
GCATAACGATCTTTATTGGT+TGG 0.455192 5_2:+22637185 None:intergenic
CTTATCAAATAAAGGAGCTA+AGG 0.455198 5_2:+22639798 None:intergenic
TTGAGAGAGATTTCTGAAAG+TGG 0.462680 5_2:-22636976 Msa0763440:CDS
TTTGAAATGTGCACCTGATC+AGG 0.462696 5_2:-22638419 Msa0763440:intron
AAGTTCTCCACAATAAAGAT+TGG 0.465034 5_2:+22637480 None:intergenic
TCTAAATCCAATCTTTATTG+TGG 0.481113 5_2:-22637487 Msa0763440:CDS
GAGCGAGAACTTTCTTTGGC+AGG 0.484206 5_2:-22638559 Msa0763440:CDS
AGAAAACATGGACCGTGCTC+AGG 0.488609 5_2:-22638492 Msa0763440:CDS
ACCATGAGTGTTCAGCATAT+AGG 0.492586 5_2:-22639990 Msa0763440:CDS
CTTGTATGGATATTCAATCC+AGG 0.496342 5_2:+22637826 None:intergenic
AAATGTTGTTAATATTTCTA+GGG 0.499671 5_2:-22637159 Msa0763440:intron
TGGAGGCCACGGCACGGATG+AGG 0.502489 5_2:+22640144 None:intergenic
TATTTAGTTCATCATCGCTA+AGG 0.518350 5_2:+22639695 None:intergenic
GTCGTAGGAGACAATCGAAC+TGG 0.520109 5_2:-22640176 Msa0763440:CDS
CTCGAAATTATTGGAGGCCA+CGG 0.521979 5_2:+22640133 None:intergenic
AAATGCCCCGTGAGAAAACA+TGG 0.522627 5_2:-22638504 Msa0763440:CDS
CATACAAGGATGCTGTAGAA+AGG 0.525710 5_2:-22637811 Msa0763440:CDS
TGAGGCCAAAGACTCCTTGT+TGG 0.527343 5_2:+22636936 None:intergenic
GAACTTCAGTGCGGAAGCCT+CGG 0.528410 5_2:+22640207 None:intergenic
ATAGCAGATGACGGATCACC+AGG 0.536204 5_2:+22637441 None:intergenic
TCCTATATGCTGAACACTCA+TGG 0.537046 5_2:+22639989 None:intergenic
TTTACAACCAAAATTTCAGA+TGG 0.537649 5_2:+22638619 None:intergenic
TATTGAATTACTTTATTGGG+AGG 0.539716 5_2:-22637314 Msa0763440:intron
CTCTGTGATCGTGACGGAGA+TGG 0.541204 5_2:-22639721 Msa0763440:CDS
CACAAAGCTGCTGGCCAACA+AGG 0.541656 5_2:-22636950 Msa0763440:CDS
CATTTGTGCGGGCTTTGAAG+CGG 0.547065 5_2:-22639753 Msa0763440:CDS
ATTTAGTTCATCATCGCTAA+GGG 0.554770 5_2:+22639696 None:intergenic
ACTAAAACCTCCATTTGTGC+GGG 0.561359 5_2:-22639764 Msa0763440:CDS
CATCTGCTATCTGTGTGACT+AGG 0.561549 5_2:-22637428 Msa0763440:CDS
GTAGAAAGGAATGCATTTGG+AGG 0.562875 5_2:-22637797 Msa0763440:CDS
TTCAAAGCCCGCACAAATGG+AGG 0.565143 5_2:+22639757 None:intergenic
CTGGATTGAATATCCATACA+AGG 0.565186 5_2:-22637825 Msa0763440:CDS
TTATCAAATAAAGGAGCTAA+GGG 0.568767 5_2:+22639799 None:intergenic
TGATCAGGTGCACATTTCAA+AGG 0.569247 5_2:+22638421 None:intergenic
CGTGGCCTCCAATAATTTCG+AGG 0.569786 5_2:-22640132 Msa0763440:CDS
AAGTGGAGTCACAAAGCTGC+TGG 0.571063 5_2:-22636959 Msa0763440:CDS
AACAATTCTTCAATTTCATG+GGG 0.574861 5_2:+22638080 None:intergenic
ACTCTCCTCGAAATTATTGG+AGG 0.578547 5_2:+22640127 None:intergenic
CACTAAAACCTCCATTTGTG+CGG 0.579838 5_2:-22639765 Msa0763440:CDS
GTGGAGAACTTGGTATACAT+GGG 0.583368 5_2:-22637468 Msa0763440:CDS
TTTATCCTCTGTGATCGTGA+CGG 0.586245 5_2:-22639727 Msa0763440:CDS
CTGCTATCTGTGTGACTAGG+AGG 0.586265 5_2:-22637425 Msa0763440:CDS
TTCAGCATATAGGAATAGCC+AGG 0.586684 5_2:-22639980 Msa0763440:intron
GAAGTTCGTATTGTTGTCGT+AGG 0.591014 5_2:-22640191 Msa0763440:CDS
TTGTATGGATATTCAATCCA+GGG 0.593125 5_2:+22637827 None:intergenic
TCCTCTAGGATAAGGTGTTG+CGG 0.598450 5_2:-22638103 Msa0763440:intron
ATCAAGCCTCATCCGTGCCG+TGG 0.603172 5_2:-22640150 Msa0763440:CDS
AATTATTGGAGGCCACGGCA+CGG 0.623841 5_2:+22640138 None:intergenic
CCTCGGTGTACAGAAGCTCT+CGG 0.628927 5_2:+22640224 None:intergenic
TCAGGTGCACATTTCAAAGG+TGG 0.639373 5_2:+22638424 None:intergenic
ATATCCAAACTTCCTGAGCA+CGG 0.642415 5_2:+22638480 None:intergenic
ATCTATCTACCTTTCCGGAG+CGG 0.645267 5_2:+22638052 None:intergenic
GTCACACAGATAGCAGATGA+CGG 0.670220 5_2:+22637432 None:intergenic
CCGAGAGCTTCTGTACACCG+AGG 0.768258 5_2:-22640224 Msa0763440:CDS
CAACAATACGAACTTCAGTG+CGG 0.780632 5_2:+22640198 None:intergenic
CATCTCCGTCACGATCACAG+AGG 0.789829 5_2:+22639722 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATGAAAAATTAAGTTTT+AGG - chr5_2:22638201-22638220 Msa0763440:intron 10.0%
!!! TTTTTTTTTTTTTGTAAATC+TGG + chr5_2:22638269-22638288 None:intergenic 10.0%
!!! AATACACAATTATTATTTTT+TGG + chr5_2:22638423-22638442 None:intergenic 10.0%
!!! AAACTATTTTGCTAAAAAAA+CGG - chr5_2:22637650-22637669 Msa0763440:intron 15.0%
!!! ACTTAATTTTTCATTAAAAC+TGG + chr5_2:22638198-22638217 None:intergenic 15.0%
!! ATAAAGAACACAAAAAAATA+AGG + chr5_2:22638761-22638780 None:intergenic 15.0%
!! CATTATTGAATTACTTTATT+GGG - chr5_2:22639813-22639832 Msa0763440:CDS 15.0%
!! TAAATGTTGTTAATATTTCT+AGG - chr5_2:22639970-22639989 Msa0763440:intron 15.0%
!!! AAATGTTGTTAATATTTCTA+GGG - chr5_2:22639971-22639990 Msa0763440:intron 15.0%
!! CAAAACTATAAATCATAAAT+TGG + chr5_2:22640107-22640126 None:intergenic 15.0%
!! TGATGAACTAAATATTTATC+AGG - chr5_2:22637444-22637463 Msa0763440:CDS 20.0%
!!! AAACTTTTATTCAATCTACA+AGG + chr5_2:22637547-22637566 None:intergenic 20.0%
!! TCAAAATGGTTATAATTTAC+CGG + chr5_2:22637601-22637620 None:intergenic 20.0%
!!! TATAACCATTTTGAAAAATC+CGG - chr5_2:22637607-22637626 Msa0763440:intron 20.0%
!!! GATTTTTTAAATAAGTTCAC+CGG + chr5_2:22637629-22637648 None:intergenic 20.0%
!!! GTTTTTTTAGCAAAATAGTT+TGG + chr5_2:22637651-22637670 None:intergenic 20.0%
!! TTATCTTATTCTATTCTCAT+TGG - chr5_2:22638823-22638842 Msa0763440:intron 20.0%
!! AAACAATTCTTCAATTTCAT+GGG + chr5_2:22639054-22639073 None:intergenic 20.0%
!! AAAACAATTCTTCAATTTCA+TGG + chr5_2:22639055-22639074 None:intergenic 20.0%
!! TCATAAATCATGTAAAACTA+AGG + chr5_2:22639520-22639539 None:intergenic 20.0%
!! GCATTATTGAATTACTTTAT+TGG - chr5_2:22639812-22639831 Msa0763440:CDS 20.0%
!!! ATGATTTATAGTTTTGTTGT+AGG - chr5_2:22640111-22640130 Msa0763440:intron 20.0%
! ATCTAGCAGATCAAAATTAT+TGG + chr5_2:22637038-22637057 None:intergenic 25.0%
! TAGCATAAATAAAAGATACC+TGG + chr5_2:22637171-22637190 None:intergenic 25.0%
! TATTGTAATTTCCTTGTTGA+AGG - chr5_2:22637267-22637286 Msa0763440:intron 25.0%
! TTATCAAATAAAGGAGCTAA+GGG + chr5_2:22637334-22637353 None:intergenic 25.0%
! ACCAGGAAAATAAAAAAAAG+AGG - chr5_2:22637938-22637957 Msa0763440:intron 25.0%
!!! TCCTCTTTTTTTTATTTTCC+TGG + chr5_2:22637942-22637961 None:intergenic 25.0%
!!! TGAAAAATTAAGTTTTAGGC+AGG - chr5_2:22638205-22638224 Msa0763440:intron 25.0%
!!! ACTAAACCAAATTTTTGGTT+TGG + chr5_2:22638320-22638339 None:intergenic 25.0%
!! ACCAAAAATTTGGTTTAGTT+TGG - chr5_2:22638321-22638340 Msa0763440:intron 25.0%
!! ACCAAACTAAACCAAATTTT+TGG + chr5_2:22638325-22638344 None:intergenic 25.0%
!!! AAATTTGGTTTAGTTTGGTT+TGG - chr5_2:22638326-22638345 Msa0763440:intron 25.0%
! AAAATTTCAGATGGTTGAAA+AGG + chr5_2:22638505-22638524 None:intergenic 25.0%
!!! TTTTCAACCATCTGAAATTT+TGG - chr5_2:22638504-22638523 Msa0763440:CDS 25.0%
! TTTACAACCAAAATTTCAGA+TGG + chr5_2:22638514-22638533 None:intergenic 25.0%
!!! TGAAATTTTGGTTGTAAAGA+AGG - chr5_2:22638516-22638535 Msa0763440:CDS 25.0%
! ATGAAAATGTGAAATTAGTC+CGG + chr5_2:22638955-22638974 None:intergenic 25.0%
! GATATTACCCAAAAATGATT+GGG + chr5_2:22638985-22639004 None:intergenic 25.0%
! AGATATTACCCAAAAATGAT+TGG + chr5_2:22638986-22639005 None:intergenic 25.0%
! AACAATTCTTCAATTTCATG+GGG + chr5_2:22639053-22639072 None:intergenic 25.0%
! AAATGTACATACATGCTTTA+AGG - chr5_2:22639135-22639154 Msa0763440:intron 25.0%
! ATGATTTATGACTATATGTC+TGG - chr5_2:22639529-22639548 Msa0763440:intron 25.0%
! TCTAAATCCAATCTTTATTG+TGG - chr5_2:22639643-22639662 Msa0763440:intron 25.0%
! TATTGAATTACTTTATTGGG+AGG - chr5_2:22639816-22639835 Msa0763440:CDS 25.0%
! GAATACATCAAATAAGACTT+TGG + chr5_2:22640058-22640077 None:intergenic 25.0%
AGCAGATCAAAATTATTGGA+GGG + chr5_2:22637034-22637053 None:intergenic 30.0%
TAGCAGATCAAAATTATTGG+AGG + chr5_2:22637035-22637054 None:intergenic 30.0%
ATGAAAATCAGCAGGTAAAT+CGG - chr5_2:22637056-22637075 Msa0763440:intron 30.0%
CTTATCAAATAAAGGAGCTA+AGG + chr5_2:22637335-22637354 None:intergenic 30.0%
! CTTAGCTCCTTTATTTGATA+AGG - chr5_2:22637333-22637352 Msa0763440:CDS 30.0%
TGTGACTCCTTATCAAATAA+AGG + chr5_2:22637343-22637362 None:intergenic 30.0%
! ATTTAGTTCATCATCGCTAA+GGG + chr5_2:22637437-22637456 None:intergenic 30.0%
! TATTTAGTTCATCATCGCTA+AGG + chr5_2:22637438-22637457 None:intergenic 30.0%
CGTATTAGATTTCAAAACTG+TGG - chr5_2:22637487-22637506 Msa0763440:CDS 30.0%
TTTAGCTATGCTCAAAAAAC+CGG - chr5_2:22637579-22637598 Msa0763440:intron 30.0%
AAAAGCGAATTCAGCATATT+TGG + chr5_2:22638046-22638065 None:intergenic 30.0%
GCAAAGGAGTAAATCAATTT+GGG + chr5_2:22638105-22638124 None:intergenic 30.0%
TGCAAAGGAGTAAATCAATT+TGG + chr5_2:22638106-22638125 None:intergenic 30.0%
ACTGAACCAAACCAAAAATT+TGG - chr5_2:22638311-22638330 Msa0763440:intron 30.0%
ATGGTAGGTTATATATGTTG+TGG - chr5_2:22638374-22638393 Msa0763440:intron 30.0%
TAGGTTATATATGTTGTGGT+GGG - chr5_2:22638378-22638397 Msa0763440:intron 30.0%
AATCTAACTTAACTCTCTAC+AGG - chr5_2:22638462-22638481 Msa0763440:CDS 30.0%
AAATGAAGCAATTCGTTTCT+TGG - chr5_2:22638875-22638894 Msa0763440:intron 30.0%
TTCTTGGAGAAAATCTTTGA+TGG - chr5_2:22638891-22638910 Msa0763440:intron 30.0%
!! AAAATCTTTGATGGACTTGA+TGG - chr5_2:22638900-22638919 Msa0763440:intron 30.0%
TGAAAATGTGAAATTAGTCC+GGG + chr5_2:22638954-22638973 None:intergenic 30.0%
TTGTATGGATATTCAATCCA+GGG + chr5_2:22639306-22639325 None:intergenic 30.0%
AATGTTTGTAGAAAAGTGGT+GGG - chr5_2:22639439-22639458 Msa0763440:intron 30.0%
AAGTTCTCCACAATAAAGAT+TGG + chr5_2:22639653-22639672 None:intergenic 30.0%
AATCTTTATTGTGGAGAACT+TGG - chr5_2:22639652-22639671 Msa0763440:intron 30.0%
ATAATTAAAGACGTGTTACC+AGG + chr5_2:22639866-22639885 None:intergenic 30.0%
GTTGTTGAAATTCATAATGC+AGG - chr5_2:22639901-22639920 Msa0763440:intron 30.0%
TACAGCATAACGATCTTTAT+TGG + chr5_2:22639952-22639971 None:intergenic 30.0%
! GATGTATTCATTTTGTGTGT+TGG - chr5_2:22640069-22640088 Msa0763440:intron 30.0%
AAGACTCTCCTCGAAATTAT+TGG + chr5_2:22637009-22637028 None:intergenic 35.0%
! TAGTGACATCACCTGTTTTA+CGG + chr5_2:22637089-22637108 None:intergenic 35.0%
TAAAGGAGCTAAGGGATAAA+GGG + chr5_2:22637326-22637345 None:intergenic 35.0%
ATAAAGGAGCTAAGGGATAA+AGG + chr5_2:22637327-22637346 None:intergenic 35.0%
GGTGTCAGACTATTATATAC+TGG + chr5_2:22637526-22637545 None:intergenic 35.0%
!! GTTCACCGGATTTTTCAAAA+TGG + chr5_2:22637615-22637634 None:intergenic 35.0%
AAATAGAAGAGAAAGTGACC+AGG - chr5_2:22637921-22637940 Msa0763440:intron 35.0%
! TTAAAACTGGTTTCTTGCCA+GGG + chr5_2:22638185-22638204 None:intergenic 35.0%
! ATTAAAACTGGTTTCTTGCC+AGG + chr5_2:22638186-22638205 None:intergenic 35.0%
GTAGGTTATATATGTTGTGG+TGG - chr5_2:22638377-22638396 Msa0763440:intron 35.0%
!!! GGGCATTTTTTCTAAGAAGA+GGG + chr5_2:22638614-22638633 None:intergenic 35.0%
AGTTATTTGTGCAAATGACC+CGG - chr5_2:22638933-22638952 Msa0763440:intron 35.0%
CCTAGAGGATGGAAAATATA+TGG + chr5_2:22639016-22639035 None:intergenic 35.0%
! CCATATATTTTCCATCCTCT+AGG - chr5_2:22639013-22639032 Msa0763440:intron 35.0%
!!! ATTTTCCATCCTCTAGGATA+AGG - chr5_2:22639019-22639038 Msa0763440:intron 35.0%
AAGCAATCTATCTACCTTTC+CGG + chr5_2:22639086-22639105 None:intergenic 35.0%
!! ACATACATGCTTTAAGGATG+TGG - chr5_2:22639141-22639160 Msa0763440:intron 35.0%
TCCTAATTGACATTCAGACT+CGG + chr5_2:22639239-22639258 None:intergenic 35.0%
TGAATGTCAATTAGGACTCT+TGG - chr5_2:22639243-22639262 Msa0763440:intron 35.0%
CTTGTATGGATATTCAATCC+AGG + chr5_2:22639307-22639326 None:intergenic 35.0%
CTGGATTGAATATCCATACA+AGG - chr5_2:22639305-22639324 Msa0763440:intron 35.0%
! ACTTGATGCATTTTTGTCAG+AGG - chr5_2:22639362-22639381 Msa0763440:intron 35.0%
TCAACAAATCACAAGGAAGA+GGG + chr5_2:22639417-22639436 None:intergenic 35.0%
ACATTGCTCAACAAATCACA+AGG + chr5_2:22639424-22639443 None:intergenic 35.0%
GAGCAATGTTTGTAGAAAAG+TGG - chr5_2:22639435-22639454 Msa0763440:intron 35.0%
CAATGTTTGTAGAAAAGTGG+TGG - chr5_2:22639438-22639457 Msa0763440:intron 35.0%
! ATTATGTGTTTTCCGAACAG+TGG - chr5_2:22639606-22639625 Msa0763440:intron 35.0%
! TTATGTGTTTTCCGAACAGT+GGG - chr5_2:22639607-22639626 Msa0763440:intron 35.0%
GGATTGTAAGCTTCAGAATA+TGG + chr5_2:22639927-22639946 None:intergenic 35.0%
GCATAACGATCTTTATTGGT+TGG + chr5_2:22639948-22639967 None:intergenic 35.0%
! TAAGACTTTGGTGTGAGAAA+AGG + chr5_2:22640046-22640065 None:intergenic 35.0%
! TTGAGAGAGATTTCTGAAAG+TGG - chr5_2:22640154-22640173 Msa0763440:CDS 35.0%
AAAAACTGCAATGTCACATG+AGG + chr5_2:22640215-22640234 None:intergenic 35.0%
! TTGCAGTTTTTGTTCATGAC+AGG - chr5_2:22640224-22640243 Msa0763440:CDS 35.0%
CAACAATACGAACTTCAGTG+CGG + chr5_2:22636935-22636954 None:intergenic 40.0%
GAAGTTCGTATTGTTGTCGT+AGG - chr5_2:22636939-22636958 Msa0763440:CDS 40.0%
ACTCTCCTCGAAATTATTGG+AGG + chr5_2:22637006-22637025 None:intergenic 40.0%
TCTGCTAGATGAAAATCAGC+AGG - chr5_2:22637048-22637067 Msa0763440:intron 40.0%
ACCATGAGTGTTCAGCATAT+AGG - chr5_2:22637140-22637159 Msa0763440:intron 40.0%
TCCTATATGCTGAACACTCA+TGG + chr5_2:22637144-22637163 None:intergenic 40.0%
TTCAGCATATAGGAATAGCC+AGG - chr5_2:22637150-22637169 Msa0763440:intron 40.0%
AGCTTCAAAGACCTTCAACA+AGG + chr5_2:22637281-22637300 None:intergenic 40.0%
CACTAAAACCTCCATTTGTG+CGG - chr5_2:22637365-22637384 Msa0763440:CDS 40.0%
ACTAAAACCTCCATTTGTGC+GGG - chr5_2:22637366-22637385 Msa0763440:CDS 40.0%
TTTATCCTCTGTGATCGTGA+CGG - chr5_2:22637403-22637422 Msa0763440:CDS 40.0%
GCGACAGTGACATGATTAAT+TGG + chr5_2:22637707-22637726 None:intergenic 40.0%
!! AAAAAGAGGAGCACTGTACA+TGG - chr5_2:22637952-22637971 Msa0763440:intron 40.0%
AGAGAAAACAACGATGCAAG+TGG - chr5_2:22637981-22638000 Msa0763440:intron 40.0%
TGATTTACTCCTTTGCATGC+TGG - chr5_2:22638109-22638128 Msa0763440:intron 40.0%
CTGGTTTCTCAACAAGAGAT+AGG - chr5_2:22638128-22638147 Msa0763440:intron 40.0%
! TAAAACTGGTTTCTTGCCAG+GGG + chr5_2:22638184-22638203 None:intergenic 40.0%
!!! GTTCTAACCCAGTTTTGAAC+TGG - chr5_2:22638235-22638254 Msa0763440:CDS 40.0%
AACCATGCACACTTGTGTTA+TGG - chr5_2:22638355-22638374 Msa0763440:intron 40.0%
TACCATAACACAAGTGTGCA+TGG + chr5_2:22638360-22638379 None:intergenic 40.0%
ATGCACACTTGTGTTATGGT+AGG - chr5_2:22638359-22638378 Msa0763440:intron 40.0%
GTGCGAAAAAAATTGCCTGA+AGG - chr5_2:22638541-22638560 Msa0763440:CDS 40.0%
GAATGAGCGAGAACTTTCTT+TGG - chr5_2:22638567-22638586 Msa0763440:CDS 40.0%
!!! GGGGCATTTTTTCTAAGAAG+AGG + chr5_2:22638615-22638634 None:intergenic 40.0%
ATATCCAAACTTCCTGAGCA+CGG + chr5_2:22638653-22638672 None:intergenic 40.0%
TGATCAGGTGCACATTTCAA+AGG + chr5_2:22638712-22638731 None:intergenic 40.0%
! TTTGAAATGTGCACCTGATC+AGG - chr5_2:22638711-22638730 Msa0763440:intron 40.0%
CTGAAAAGAAACACCTGATC+AGG + chr5_2:22638727-22638746 None:intergenic 40.0%
!! TGCTGCTTCCCAATCATTTT+TGG - chr5_2:22638974-22638993 Msa0763440:intron 40.0%
!! GCTGCTTCCCAATCATTTTT+GGG - chr5_2:22638975-22638994 Msa0763440:intron 40.0%
! AGAATTGTTTTCTACCGCTC+CGG - chr5_2:22639064-22639083 Msa0763440:intron 40.0%
CCTAATTGACATTCAGACTC+GGG + chr5_2:22639238-22639257 None:intergenic 40.0%
CTTTCTACAGCATCCTTGTA+TGG + chr5_2:22639321-22639340 None:intergenic 40.0%
CATACAAGGATGCTGTAGAA+AGG - chr5_2:22639319-22639338 Msa0763440:intron 40.0%
GCTGTAGAAAGGAATGCATT+TGG - chr5_2:22639330-22639349 Msa0763440:intron 40.0%
GTAGAAAGGAATGCATTTGG+AGG - chr5_2:22639333-22639352 Msa0763440:intron 40.0%
CTCAACAAATCACAAGGAAG+AGG + chr5_2:22639418-22639437 None:intergenic 40.0%
TGTGGAGAACTTGGTATACA+TGG - chr5_2:22639661-22639680 Msa0763440:intron 40.0%
GTGGAGAACTTGGTATACAT+GGG - chr5_2:22639662-22639681 Msa0763440:intron 40.0%
! TTGGTATACATGGGTTTTCC+TGG - chr5_2:22639671-22639690 Msa0763440:intron 40.0%
CTTCATCTTTGGACCTATGA+AGG - chr5_2:22639778-22639797 Msa0763440:CDS 40.0%
AGTTGTTACCTTGAGATTCC+TGG - chr5_2:22639845-22639864 Msa0763440:intron 40.0%
CTCGAAATTATTGGAGGCCA+CGG + chr5_2:22637000-22637019 None:intergenic 45.0%
GTTGAGAAACCAGCATGCAA+AGG + chr5_2:22638121-22638140 None:intergenic 45.0%
GTGCAGTCCAGTTCAAAACT+GGG + chr5_2:22638245-22638264 None:intergenic 45.0%
TGTGCAGTCCAGTTCAAAAC+TGG + chr5_2:22638246-22638265 None:intergenic 45.0%
AAATGCCCCGTGAGAAAACA+TGG - chr5_2:22638626-22638645 Msa0763440:CDS 45.0%
TCAGGTGCACATTTCAAAGG+TGG + chr5_2:22638709-22638728 None:intergenic 45.0%
CAACACCTTATCCTAGAGGA+TGG + chr5_2:22639027-22639046 None:intergenic 45.0%
!! TCCTCTAGGATAAGGTGTTG+CGG - chr5_2:22639027-22639046 Msa0763440:intron 45.0%
ATCTATCTACCTTTCCGGAG+CGG + chr5_2:22639081-22639100 None:intergenic 45.0%
CCCGAGTCTGAATGTCAATT+AGG - chr5_2:22639235-22639254 Msa0763440:intron 45.0%
!! TGACTTTTGATTGCAGTCCC+TGG - chr5_2:22639286-22639305 Msa0763440:intron 45.0%
!! AGAAAAGTGGTGGGCTTCTA+TGG - chr5_2:22639448-22639467 Msa0763440:intron 45.0%
GTCACACAGATAGCAGATGA+CGG + chr5_2:22639701-22639720 None:intergenic 45.0%
CATCTGCTATCTGTGTGACT+AGG - chr5_2:22639702-22639721 Msa0763440:CDS 45.0%
GTCTTGCAGTGCTTCATCTT+TGG - chr5_2:22639767-22639786 Msa0763440:CDS 45.0%
ATCTTTGGACCTATGAAGGC+TGG - chr5_2:22639782-22639801 Msa0763440:CDS 45.0%
! GCAGATTTTCCAGCCTTCAT+AGG + chr5_2:22639794-22639813 None:intergenic 45.0%
ACGTGTTACCAGGAATCTCA+AGG + chr5_2:22639856-22639875 None:intergenic 45.0%
!! TTAAAATAAGATTTAAAAAA+CGG + chr5_2:22637210-22637229 None:intergenic 5.0%
!!! TTACTTATTTTAATTTTTTT+GGG + chr5_2:22637775-22637794 None:intergenic 5.0%
!!! TTTACTTATTTTAATTTTTT+TGG + chr5_2:22637776-22637795 None:intergenic 5.0%
GTCGTAGGAGACAATCGAAC+TGG - chr5_2:22636954-22636973 Msa0763440:CDS 50.0%
AATTATTGGAGGCCACGGCA+CGG + chr5_2:22636995-22637014 None:intergenic 50.0%
CGTGGCCTCCAATAATTTCG+AGG - chr5_2:22636998-22637017 Msa0763440:CDS 50.0%
TCGGCATGTGACCGTAAAAC+AGG - chr5_2:22637075-22637094 Msa0763440:intron 50.0%
TTCAAAGCCCGCACAAATGG+AGG + chr5_2:22637376-22637395 None:intergenic 50.0%
!! CATTTGTGCGGGCTTTGAAG+CGG - chr5_2:22637377-22637396 Msa0763440:CDS 50.0%
CAATAGAGAGTTTCCACCCC+TGG - chr5_2:22638165-22638184 Msa0763440:intron 50.0%
TCTCGCTCATTCACACCTTC+AGG + chr5_2:22638559-22638578 None:intergenic 50.0%
GAGCGAGAACTTTCTTTGGC+AGG - chr5_2:22638571-22638590 Msa0763440:CDS 50.0%
! ACGGTCCATGTTTTCTCACG+GGG + chr5_2:22638634-22638653 None:intergenic 50.0%
! CACGGTCCATGTTTTCTCAC+GGG + chr5_2:22638635-22638654 None:intergenic 50.0%
! GCACGGTCCATGTTTTCTCA+CGG + chr5_2:22638636-22638655 None:intergenic 50.0%
AGAAAACATGGACCGTGCTC+AGG - chr5_2:22638638-22638657 Msa0763440:CDS 50.0%
! TGTTTTCTACCGCTCCGGAA+AGG - chr5_2:22639069-22639088 Msa0763440:intron 50.0%
TGTCATGAGTGCCCACTGTT+CGG + chr5_2:22639621-22639640 None:intergenic 50.0%
!! ATAGCAGATGACGGATCACC+AGG + chr5_2:22639692-22639711 None:intergenic 50.0%
CTGCTATCTGTGTGACTAGG+AGG - chr5_2:22639705-22639724 Msa0763440:CDS 50.0%
AAGTGGAGTCACAAAGCTGC+TGG - chr5_2:22640171-22640190 Msa0763440:CDS 50.0%
TGAGGCCAAAGACTCCTTGT+TGG + chr5_2:22640197-22640216 None:intergenic 50.0%
! CCTCGGTGTACAGAAGCTCT+CGG + chr5_2:22636909-22636928 None:intergenic 55.0%
GAACTTCAGTGCGGAAGCCT+CGG + chr5_2:22636926-22636945 None:intergenic 55.0%
CGCTTCAAAGCCCGCACAAA+TGG + chr5_2:22637379-22637398 None:intergenic 55.0%
CATCTCCGTCACGATCACAG+AGG + chr5_2:22637411-22637430 None:intergenic 55.0%
! CTCTGTGATCGTGACGGAGA+TGG - chr5_2:22637409-22637428 Msa0763440:CDS 55.0%
!! AGGAGCACTGTACATGGCTG+TGG - chr5_2:22637958-22637977 Msa0763440:intron 55.0%
! AACTGGTTTCTTGCCAGGGG+TGG + chr5_2:22638181-22638200 None:intergenic 55.0%
TGGACCGTGCTCAGGAAGTT+TGG - chr5_2:22638646-22638665 Msa0763440:CDS 55.0%
GCCGCAACACCTTATCCTAG+AGG + chr5_2:22639031-22639050 None:intergenic 55.0%
CACAAAGCTGCTGGCCAACA+AGG - chr5_2:22640180-22640199 Msa0763440:CDS 55.0%
GCTGGCCAACAAGGAGTCTT+TGG - chr5_2:22640189-22640208 Msa0763440:CDS 55.0%
CCGAGAGCTTCTGTACACCG+AGG - chr5_2:22636906-22636925 Msa0763440:CDS 60.0%
ATCAAGCCTCATCCGTGCCG+TGG - chr5_2:22636980-22636999 Msa0763440:CDS 60.0%
TGGAGGCCACGGCACGGATG+AGG + chr5_2:22636989-22637008 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 22636903 22640249 22636903 ID=Msa0763440;Name=Msa0763440
chr5_2 mRNA 22636903 22640249 22636903 ID=Msa0763440-mRNA-1;Parent=Msa0763440;Name=Msa0763440-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0|0|0|0.8|1|1|10|0|403
chr5_2 exon 22640124 22640249 22640124 ID=Msa0763440-mRNA-1:exon:9317;Parent=Msa0763440-mRNA-1
chr5_2 exon 22639981 22640034 22639981 ID=Msa0763440-mRNA-1:exon:9316;Parent=Msa0763440-mRNA-1
chr5_2 exon 22639687 22639863 22639687 ID=Msa0763440-mRNA-1:exon:9315;Parent=Msa0763440-mRNA-1
chr5_2 exon 22638420 22638668 22638420 ID=Msa0763440-mRNA-1:exon:9314;Parent=Msa0763440-mRNA-1
chr5_2 exon 22638223 22638291 22638223 ID=Msa0763440-mRNA-1:exon:9313;Parent=Msa0763440-mRNA-1
chr5_2 exon 22638062 22638117 22638062 ID=Msa0763440-mRNA-1:exon:9312;Parent=Msa0763440-mRNA-1
chr5_2 exon 22637769 22637850 22637769 ID=Msa0763440-mRNA-1:exon:9311;Parent=Msa0763440-mRNA-1
chr5_2 exon 22637315 22637526 22637315 ID=Msa0763440-mRNA-1:exon:9310;Parent=Msa0763440-mRNA-1
chr5_2 exon 22637160 22637229 22637160 ID=Msa0763440-mRNA-1:exon:9309;Parent=Msa0763440-mRNA-1
chr5_2 exon 22636903 22637019 22636903 ID=Msa0763440-mRNA-1:exon:9308;Parent=Msa0763440-mRNA-1
chr5_2 CDS 22640124 22640249 22640124 ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1
chr5_2 CDS 22639981 22640034 22639981 ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1
chr5_2 CDS 22639687 22639863 22639687 ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1
chr5_2 CDS 22638420 22638668 22638420 ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1
chr5_2 CDS 22638223 22638291 22638223 ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1
chr5_2 CDS 22638062 22638117 22638062 ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1
chr5_2 CDS 22637769 22637850 22637769 ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1
chr5_2 CDS 22637315 22637526 22637315 ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1
chr5_2 CDS 22637160 22637229 22637160 ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1
chr5_2 CDS 22636903 22637019 22636903 ID=Msa0763440-mRNA-1:cds;Parent=Msa0763440-mRNA-1
Gene Sequence

>Msa0763440

ATGCCGAGAGCTTCTGTACACCGAGGCTTCCGCACTGAAGTTCGTATTGTTGTCGTAGGAGACAATCGAACTGGTAAATCAAGCCTCATCCGTGCCGTGGCCTCCAATAATTTCGAGGAGAGTCTTCAGTTCAGAGAGATTGAAGCATACCATGAGTGTTCAGCATATAGGAATAGCCAGGTCTTTGAAGCTTTCTACTTAGCACAGAAGAATGCCCTTTATCCCTTAGCTCCTTTATTTGATAAGGAGTCACAGACACTAAAACCTCCATTTGTGCGGGCTTTGAAGCGGATTTTTATCCTCTGTGATCGTGACGGAGATGGTGCCCTTAGCGATGATGAACTAAATATTTATCAGGTTAAATGTTTTAATGCTCCTTTTCAACCATCTGAAATTTTGGTTGTAAAGAAGGTTGTGCGAAAAAAATTGCCTGAAGGTGTGAATGAGCGAGAACTTTCTTTGGCAGGATTTATATCTCTTCACGCCCTCTTCTTAGAAAAAATGCCCCGTGAGAAAACATGGACCGTGCTCAGGAAGTTTGGATATAATGATGATATCAAGCTTGCTGATAATTTGATTCCACCTTTGAAATGTGCACCTGATCAGAGTGTTGAGTTAACAAATGAAGCAATTCGTTTCTTGGAGAAAATCTTTGATGGACTTGATGGTGATTTTGATAAGGTGTTGCGGCCCCATGAAATTGAAGAATTGTTTTCTACCGCTCCGGAAAGTCCCTGGATTGAATATCCATACAAGGATGCTGTAGAAAGGAATGCATTTGGAGGACTATCACTTGATGCATTTTTGTCAGAGTGGGCACTCATGACACTTCTAAATCCAATCTTTATTGTGGAGAACTTGGTATACATGGGTTTTCCTGGTGATCCGTCATCTGCTATCTGTGTGACTAGGAGGCGACACGTGAATCGCAAAAAACAGAATTCAGAAAGAAATGTCTTGCAGTGCTTCATCTTTGGACCTATGAAGGCTGGAAAATCTGCATTATTGAATTACTTTATTGGGAGGCCATATTCTGAAGCTTACAATCCAACCAATAAAGATCGTTATGCTGTAAATGTTGTTAATATTTCTAGGGAAAACAAAAAATATCTTGTGTTGAGAGAGATTTCTGAAAGTGGAGTCACAAAGCTGCTGGCCAACAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAGGTGA

Protein sequence

>Msa0763440

MPRASVHRGFRTEVRIVVVGDNRTGKSSLIRAVASNNFEESLQFREIEAYHECSAYRNSQVFEAFYLAQKNALYPLAPLFDKESQTLKPPFVRALKRIFILCDRDGDGALSDDELNIYQVKCFNAPFQPSEILVVKKVVRKKLPEGVNERELSLAGFISLHALFLEKMPREKTWTVLRKFGYNDDIKLADNLIPPLKCAPDQSVELTNEAIRFLEKIFDGLDGDFDKVLRPHEIEELFSTAPESPWIEYPYKDAVERNAFGGLSLDAFLSEWALMTLLNPIFIVENLVYMGFPGDPSSAICVTRRRHVNRKKQNSERNVLQCFIFGPMKAGKSALLNYFIGRPYSEAYNPTNKDRYAVNVVNISRENKKYLVLREISESGVTKLLANKESLASCDIAVFVHDR*