AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0321310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0321310 MtrunA17_Chr7g0262231 69.189 185 47 1 7 181 202 386 3.47e-76 250
Msa0321310 MtrunA17_Chr7g0262241 89.683 126 13 0 7 132 202 327 3.21e-72 239
Msa0321310 MtrunA17_Chr7g0261951 57.333 225 75 2 7 221 202 415 4.42e-72 238
Msa0321310 MtrunA17_Chr7g0261981 66.486 185 52 1 7 181 202 386 9.24e-72 237
Msa0321310 MtrunA17_Chr7g0261971 63.784 185 57 1 7 181 198 382 1.34e-69 231
Msa0321310 MtrunA17_Chr7g0262261 76.984 126 29 0 7 132 173 298 1.55e-63 214
Msa0321310 MtrunA17_Chr2g0332211 76.190 126 30 0 7 132 288 413 1.09e-61 208
Msa0321310 MtrunA17_Chr7g0262221 60.541 185 45 2 7 181 203 369 2.20e-61 207
Msa0321310 MtrunA17_Chr4g0004021 76.190 126 30 0 7 132 211 336 3.02e-61 207
Msa0321310 MtrunA17_Chr4g0003981 76.190 126 30 0 7 132 213 338 3.26e-61 207
Msa0321310 MtrunA17_Chr2g0332221 75.397 126 31 0 7 132 207 332 4.89e-61 206
Msa0321310 MtrunA17_Chr2g0332241 75.397 126 31 0 7 132 207 332 5.29e-61 206
Msa0321310 MtrunA17_Chr4g0003971 74.194 124 32 0 9 132 203 326 2.05e-58 199
Msa0321310 MtrunA17_Chr3g0138261 69.841 126 38 0 7 132 206 331 5.01e-58 198
Msa0321310 MtrunA17_Chr1g0148841 70.161 124 37 0 9 132 208 331 2.76e-55 190
Msa0321310 MtrunA17_Chr1g0171351 68.254 126 40 0 7 132 216 341 1.92e-54 187
Msa0321310 MtrunA17_Chr0c20g0493841 65.079 126 44 0 7 132 208 333 8.89e-54 186
Msa0321310 MtrunA17_Chr1g0198291 68.254 126 40 0 7 132 229 354 1.06e-52 182
Msa0321310 MtrunA17_Chr7g0262251 52.973 185 59 2 7 181 215 381 1.80e-52 182
Msa0321310 MtrunA17_Chr8g0340651 61.905 126 48 0 7 132 218 343 1.19e-51 179
Msa0321310 MtrunA17_Chr2g0331081 61.111 126 49 0 7 132 219 344 3.74e-51 178
Msa0321310 MtrunA17_Chr4g0062871 60.317 126 50 0 7 132 190 315 2.05e-50 176
Msa0321310 MtrunA17_Chr1g0148811 63.710 124 45 0 9 132 196 319 9.79e-50 174
Msa0321310 MtrunA17_Chr7g0265971 61.240 129 49 1 5 132 215 343 1.15e-48 171
Msa0321310 MtrunA17_Chr7g0265961 63.492 126 46 0 7 132 222 347 2.28e-48 170
Msa0321310 MtrunA17_Chr7g0265981 61.111 126 49 0 7 132 224 349 3.25e-48 170
Msa0321310 MtrunA17_Chr4g0069211 62.393 117 44 0 7 123 207 323 2.61e-47 167
Msa0321310 MtrunA17_Chr7g0266001 61.111 126 49 0 7 132 103 228 2.78e-47 166
Msa0321310 MtrunA17_Chr3g0104621 54.032 124 56 1 9 132 98 220 1.34e-39 145
Msa0321310 MtrunA17_Chr5g0429871 51.181 127 61 1 7 132 18 144 1.38e-38 142
Msa0321310 MtrunA17_Chr8g0390451 53.125 64 30 0 42 105 23 86 3.13e-19 79.7
Msa0321310 MtrunA17_Chr7g0262321 53.846 65 12 1 68 132 4 50 9.46e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0321310 AT1G15520.2 72.581 124 34 0 9 132 211 334 3.72e-60 204
Msa0321310 AT1G15520.1 72.581 124 34 0 9 132 211 334 4.57e-60 204
Msa0321310 AT3G16340.2 65.079 126 44 0 7 132 202 327 4.87e-53 184
Msa0321310 AT3G16340.1 65.079 126 44 0 7 132 202 327 5.01e-53 184
Msa0321310 AT1G59870.1 64.286 126 45 0 7 132 226 351 3.97e-52 181
Msa0321310 AT1G15210.1 65.079 126 44 0 7 132 224 349 1.09e-51 180
Msa0321310 AT3G30842.1 66.129 124 42 0 9 132 203 326 3.23e-51 179
Msa0321310 AT2G36380.1 62.698 126 47 0 7 132 228 353 1.53e-50 177
Msa0321310 AT2G37280.3 61.905 126 48 0 7 132 223 348 2.70e-50 176
Msa0321310 AT2G37280.4 62.602 123 46 0 10 132 39 161 3.90e-50 176
Msa0321310 AT2G37280.2 62.602 123 46 0 10 132 197 319 4.38e-50 176
Msa0321310 AT2G37280.1 62.602 123 46 0 10 132 197 319 4.72e-50 176
Msa0321310 AT1G66950.1 61.905 126 48 0 7 132 230 355 5.03e-49 172
Msa0321310 AT2G26910.1 58.730 126 52 0 7 132 190 315 1.30e-48 171
Msa0321310 AT3G53480.1 59.677 124 50 0 9 132 231 354 5.99e-48 169
Msa0321310 AT4G15236.1 60.317 126 50 0 7 132 193 318 7.23e-47 166
Msa0321310 AT4G15233.3 59.524 126 51 0 7 132 133 258 2.74e-46 164
Msa0321310 AT4G15233.6 59.524 126 51 0 7 132 133 258 2.74e-46 164
Msa0321310 AT4G15233.8 59.524 126 51 0 7 132 186 311 3.28e-46 164
Msa0321310 AT4G15233.1 59.524 126 51 0 7 132 195 320 3.28e-46 164
Msa0321310 AT4G15233.2 59.524 126 51 0 7 132 195 320 3.37e-46 164
Msa0321310 AT4G15215.8 57.937 126 53 0 7 132 190 315 5.21e-46 164
Msa0321310 AT4G15215.10 57.937 126 53 0 7 132 190 315 5.21e-46 164
Msa0321310 AT4G15215.6 57.937 126 53 0 7 132 190 315 5.21e-46 164
Msa0321310 AT4G15215.7 57.937 126 53 0 7 132 190 315 5.21e-46 164
Msa0321310 AT4G15215.9 57.937 126 53 0 7 132 190 315 5.58e-46 164
Msa0321310 AT4G15215.4 57.937 126 53 0 7 132 190 315 5.58e-46 164
Msa0321310 AT4G15215.5 57.937 126 53 0 7 132 190 315 5.58e-46 164
Msa0321310 AT4G15215.3 57.937 126 53 0 7 132 190 315 5.58e-46 164
Msa0321310 AT4G15215.2 57.937 126 53 0 7 132 190 315 5.58e-46 164
Msa0321310 AT4G15215.11 57.937 126 53 0 7 132 193 318 5.58e-46 164
Msa0321310 AT4G15215.1 57.937 126 53 0 7 132 193 318 6.08e-46 164
Msa0321310 AT4G15230.4 56.349 126 55 0 7 132 117 242 5.48e-44 158
Msa0321310 AT4G15230.2 56.349 126 55 0 7 132 196 321 6.10e-44 158
Msa0321310 AT4G15230.3 56.349 126 55 0 7 132 196 321 6.39e-44 158
Msa0321310 AT4G15230.1 56.349 126 55 0 7 132 196 321 6.39e-44 158
Msa0321310 AT2G29940.1 48.855 131 66 1 9 138 217 347 3.50e-37 138
Msa0321310 AT4G15233.7 52.381 126 42 1 7 132 195 302 4.50e-36 135
Msa0321310 AT4G15233.5 52.381 126 42 1 7 132 133 240 5.02e-36 135
Msa0321310 AT4G15233.4 52.381 126 42 1 7 132 133 240 5.02e-36 135
Msa0321310 AT1G17840.1 37.302 126 46 4 8 133 110 202 1.79e-11 63.9
Msa0321310 AT3G13220.1 32.331 133 58 3 4 136 141 241 3.97e-11 62.8

Find 77 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTATCAAATTTGCTTTC+TGG 0.139989 2_4:+22539651 None:intergenic
TGGCTTCATGATCAGGTTTC+TGG 0.177431 2_4:-22540354 Msa0321310:CDS
CGTGTCTTCAATAATGTTTA+TGG 0.223689 2_4:-22540387 Msa0321310:five_prime_UTR
TCGAACAGCAAACAAGATTA+AGG 0.247505 2_4:+22541214 None:intergenic
TACATAAGCGGCAGTTCTTT+GGG 0.271249 2_4:+22540290 None:intergenic
CTACATAAGCGGCAGTTCTT+TGG 0.311636 2_4:+22540289 None:intergenic
TCTGGAAAGGTGACTTATAA+TGG 0.312868 2_4:-22540336 Msa0321310:CDS
AAGAATGAAGGTTTGGAACT+TGG 0.346590 2_4:-22541074 Msa0321310:five_prime_UTR
GCTGCAGAAGCTTGCTGTTT+CGG 0.347608 2_4:-22539154 Msa0321310:CDS
AGTGAGCTTGATTGGTGTTT+GGG 0.355157 2_4:-22538969 Msa0321310:CDS
TTCCTTAACTCCTTCTTCCT+CGG 0.362266 2_4:+22541099 None:intergenic
GACAAAAGAAACGTGTTAAA+AGG 0.365362 2_4:-22539452 Msa0321310:CDS
TAGTGAGCTTGATTGGTGTT+TGG 0.365654 2_4:-22538970 Msa0321310:CDS
GATGGTGTGGCTTCATGATC+AGG 0.375039 2_4:-22540361 Msa0321310:CDS
CAAGGAGTTGGGCTGCGTTA+TGG 0.390090 2_4:-22540201 Msa0321310:intron
GAGGGAAAAGAGTACAAGAT+AGG 0.397888 2_4:+22538931 None:intergenic
AGGAAAGAAGAATGAAGGTT+TGG 0.412866 2_4:-22541081 Msa0321310:five_prime_UTR
TCCCTTCATTTGATTTCAGA+AGG 0.428139 2_4:-22541264 Msa0321310:five_prime_UTR
TGATAACATATTATGTCCTA+AGG 0.441326 2_4:-22539637 Msa0321310:CDS
TCCTTAACTCCTTCTTCCTC+GGG 0.442594 2_4:+22541100 None:intergenic
CAATAATGTTTATGGTAAGA+TGG 0.448204 2_4:-22540379 Msa0321310:exon
AGTTAAGGAAAGAAGAATGA+AGG 0.448467 2_4:-22541086 Msa0321310:five_prime_UTR
CGAACAGCAAACAAGATTAA+GGG 0.464594 2_4:+22541215 None:intergenic
CAGCTAGAGTCCAAGGAGTT+GGG 0.466289 2_4:-22540212 Msa0321310:CDS
CCCTTCATTTGATTTCAGAA+GGG 0.468827 2_4:-22541263 Msa0321310:five_prime_UTR
CCTTCATTTGATTTCAGAAG+GGG 0.468985 2_4:-22541262 Msa0321310:five_prime_UTR
TGAGGGATTTCTACTAATTG+AGG 0.470545 2_4:-22541025 Msa0321310:intron
CCCCTTCTGAAATCAAATGA+AGG 0.475811 2_4:+22541262 None:intergenic
TTCATGTACACATCAATGTC+TGG 0.484699 2_4:+22539797 None:intergenic
ACATGTGCTGATACTGTTGT+AGG 0.486923 2_4:-22539504 Msa0321310:CDS
CATAACGCAGCCCAACTCCT+TGG 0.494891 2_4:+22540202 None:intergenic
TCAGCTAGAGTCCAAGGAGT+TGG 0.497485 2_4:-22540213 Msa0321310:CDS
ACCAGCTGAAAACAACAAAC+AGG 0.504495 2_4:+22539195 None:intergenic
GCAATGTTAAGAGGTATCTC+TGG 0.504733 2_4:-22539477 Msa0321310:CDS
GCACTTCATCAAAATCTTGA+GGG 0.505875 2_4:-22541042 Msa0321310:five_prime_UTR
TTGTCCTCTATGAGTGGTGC+TGG 0.506462 2_4:+22541330 None:intergenic
ACCCGAGGAAGAAGGAGTTA+AGG 0.507227 2_4:-22541101 Msa0321310:five_prime_UTR
AAATGACCAAACCTAGATGA+AGG 0.508478 2_4:+22541154 None:intergenic
GTAGGGAATGCAATGTTAAG+AGG 0.517676 2_4:-22539486 Msa0321310:CDS
TACACATCAATGTCTGGATC+GGG 0.518429 2_4:+22539803 None:intergenic
AGGGAAAAGAGTACAAGATA+GGG 0.527254 2_4:+22538932 None:intergenic
TGCACTAAACCTGCCGAGGA+GGG 0.543502 2_4:+22538913 None:intergenic
GTACACATCAATGTCTGGAT+CGG 0.545119 2_4:+22539802 None:intergenic
GACTCTAGCTGAGAAGGCCA+AGG 0.545687 2_4:+22540224 None:intergenic
TCATGATCAGGTTTCTGGAA+AGG 0.552511 2_4:-22540349 Msa0321310:CDS
TTGTTCATCTCACTAATAGT+CGG 0.553980 2_4:-22541133 Msa0321310:five_prime_UTR
GCCTTCTCAGCTAGAGTCCA+AGG 0.554156 2_4:-22540219 Msa0321310:CDS
CGCACTTCATCAAAATCTTG+AGG 0.556124 2_4:-22541043 Msa0321310:five_prime_UTR
ACATAAGCGGCAGTTCTTTG+GGG 0.559842 2_4:+22540291 None:intergenic
CATAAACATTATTGAAGACA+CGG 0.561216 2_4:+22540388 None:intergenic
TGTCTATTACCCGAGGAAGA+AGG 0.561241 2_4:-22541109 Msa0321310:five_prime_UTR
CCCTTCTGAAATCAAATGAA+GGG 0.568938 2_4:+22541263 None:intergenic
TCCTTGGACTCTAGCTGAGA+AGG 0.569485 2_4:+22540218 None:intergenic
TAGAGGACAACACACAGACT+TGG 0.570039 2_4:-22541317 Msa0321310:five_prime_UTR
GCTGTCTTATATCAGGAAGT+AGG 0.571081 2_4:-22539001 Msa0321310:intron
AATGACTGTTAGAGAAACCT+TGG 0.574134 2_4:-22540241 Msa0321310:CDS
TCCTCTATGAGTGGTGCTGG+CGG 0.576349 2_4:+22541333 None:intergenic
CATAAGCGGCAGTTCTTTGG+GGG 0.582408 2_4:+22540292 None:intergenic
TCCGCCAGCACCACTCATAG+AGG 0.584142 2_4:-22541334 Msa0321310:five_prime_UTR
GTTGCTGGTGCAACACAGAA+AGG 0.591078 2_4:+22539131 None:intergenic
GTCTTATATCAGGAAGTAGG+AGG 0.591413 2_4:-22538998 Msa0321310:intron
GATAACATATTATGTCCTAA+GGG 0.591649 2_4:-22539636 Msa0321310:intron
GCCTGTGGTGCTATCAGAGG+TGG 0.593297 2_4:-22539235 Msa0321310:CDS
TTGGCCTGTGGTGCTATCAG+AGG 0.594131 2_4:-22539238 Msa0321310:CDS
ACCACCTCTGATAGCACCAC+AGG 0.601251 2_4:+22539234 None:intergenic
ATGTTAAGAGGTATCTCTGG+TGG 0.602587 2_4:-22539474 Msa0321310:CDS
CATGTGCTGATACTGTTGTA+GGG 0.607154 2_4:-22539503 Msa0321310:CDS
AATGACCAAACCTAGATGAA+GGG 0.610648 2_4:+22541155 None:intergenic
ATGTTTATGGTAAGATGGTG+TGG 0.615210 2_4:-22540374 Msa0321310:exon
AGACATTGATGTGTACATGA+AGG 0.618692 2_4:-22539795 Msa0321310:intron
GTTCAGGCTGTAGCAACTGA+AGG 0.619180 2_4:-22539674 Msa0321310:intron
ATGCACTAAACCTGCCGAGG+AGG 0.622458 2_4:+22538912 None:intergenic
AAAAGAAACGTGTTAAAAGG+TGG 0.635022 2_4:-22539449 Msa0321310:CDS
AATGACTGAGCAAACGAGAG+AGG 0.649150 2_4:+22541186 None:intergenic
TGTGTGTTGTCCTCTATGAG+TGG 0.653652 2_4:+22541324 None:intergenic
AACATGCACTAAACCTGCCG+AGG 0.667373 2_4:+22538909 None:intergenic
AGTCGGTTGTCTATTACCCG+AGG 0.676694 2_4:-22541116 Msa0321310:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGGTTCTAATTATAATAAA+AGG - chr2_4:22539282-22539301 Msa0321310:intron 15.0%
!!! AGGTTCTAATTATAATAAAA+GGG - chr2_4:22539283-22539302 Msa0321310:intron 15.0%
!! TTAAAATAAAGGATATCTTT+GGG + chr2_4:22540366-22540385 None:intergenic 15.0%
!!! TTTAAAATAAAGGATATCTT+TGG + chr2_4:22540367-22540386 None:intergenic 15.0%
!! TAATTATAATAAAAGGGAAC+TGG - chr2_4:22539289-22539308 Msa0321310:intron 20.0%
!! TAAGAACATAACAACAAAAA+GGG + chr2_4:22539410-22539429 None:intergenic 20.0%
!! ATGTGTGAATTTGATAAATT+AGG - chr2_4:22539431-22539450 Msa0321310:CDS 20.0%
!! AAATCTTTATGTGAGATTAA+TGG - chr2_4:22539458-22539477 Msa0321310:CDS 20.0%
!! AATCTTTATGTGAGATTAAT+GGG - chr2_4:22539459-22539478 Msa0321310:CDS 20.0%
!!! TGTATTTATTAGTTTGAACA+AGG - chr2_4:22539618-22539637 Msa0321310:intron 20.0%
!!! AACACAACATATAATTTTCT+TGG - chr2_4:22539680-22539699 Msa0321310:intron 20.0%
!!! AATAAGTTTGTTAAAACTGA+TGG - chr2_4:22540259-22540278 Msa0321310:CDS 20.0%
!!! TAGAGTTATTTTATACTTAG+TGG - chr2_4:22540503-22540522 Msa0321310:intron 20.0%
!!! AGAGTTATTTTATACTTAGT+GGG - chr2_4:22540504-22540523 Msa0321310:intron 20.0%
!! AATGTATAACAAAGAAACAA+AGG + chr2_4:22540726-22540745 None:intergenic 20.0%
!!! TGTTATACATTTTCAGATTT+TGG - chr2_4:22540735-22540754 Msa0321310:intron 20.0%
!!! GTTATACATTTTCAGATTTT+GGG - chr2_4:22540736-22540755 Msa0321310:intron 20.0%
! CTAAAAGGGAAAATCAATTA+GGG + chr2_4:22539359-22539378 None:intergenic 25.0%
! ACTAAAAGGGAAAATCAATT+AGG + chr2_4:22539360-22539379 None:intergenic 25.0%
! GTAAGAACATAACAACAAAA+AGG + chr2_4:22539411-22539430 None:intergenic 25.0%
!!! AGTGACATTTGTATTGATTT+TGG - chr2_4:22539727-22539746 Msa0321310:intron 25.0%
! CATAAACATTATTGAAGACA+CGG + chr2_4:22539885-22539904 None:intergenic 25.0%
! CAATAATGTTTATGGTAAGA+TGG - chr2_4:22539891-22539910 Msa0321310:intron 25.0%
!!! ATCATTTTGATCTACATAAG+CGG + chr2_4:22539995-22540014 None:intergenic 25.0%
!!! CATGAGCAACTTTAAAATAA+AGG + chr2_4:22540377-22540396 None:intergenic 25.0%
!! ATGTTATCAAATTTGCTTTC+TGG + chr2_4:22540622-22540641 None:intergenic 25.0%
! TGATAACATATTATGTCCTA+AGG - chr2_4:22540633-22540652 Msa0321310:intron 25.0%
! GATAACATATTATGTCCTAA+GGG - chr2_4:22540634-22540653 Msa0321310:intron 25.0%
! GTATATATTACTTTACCCTT+AGG + chr2_4:22540652-22540671 None:intergenic 25.0%
TTGTTCATCTCACTAATAGT+CGG - chr2_4:22539137-22539156 Msa0321310:CDS 30.0%
AGTTAAGGAAAGAAGAATGA+AGG - chr2_4:22539184-22539203 Msa0321310:CDS 30.0%
!! TGAGGTGAGTTTCTAAAATT+AGG - chr2_4:22539263-22539282 Msa0321310:CDS 30.0%
TAGCAACACAACAACTAAAA+GGG + chr2_4:22539373-22539392 None:intergenic 30.0%
! AGATTAATGGGTATTGTAAG+TGG - chr2_4:22539471-22539490 Msa0321310:CDS 30.0%
GTAAGTGGTATGAGAAAATT+AGG - chr2_4:22539486-22539505 Msa0321310:CDS 30.0%
!!! ATTTGTATTGATTTTGGCAC+TGG - chr2_4:22539733-22539752 Msa0321310:intron 30.0%
TCAATTTGAACAATATGCTC+AGG + chr2_4:22539808-22539827 None:intergenic 30.0%
! GGTTACCTTTTTAGACAAAA+CGG + chr2_4:22539864-22539883 None:intergenic 30.0%
CGTGTCTTCAATAATGTTTA+TGG - chr2_4:22539883-22539902 Msa0321310:intron 30.0%
! TTATTTTCATAAGCTCTCCT+GGG + chr2_4:22540244-22540263 None:intergenic 30.0%
CTGAACATCATGAATCAAAA+GGG + chr2_4:22540582-22540601 None:intergenic 30.0%
GACAAAAGAAACGTGTTAAA+AGG - chr2_4:22540818-22540837 Msa0321310:intron 30.0%
AAAAGAAACGTGTTAAAAGG+TGG - chr2_4:22540821-22540840 Msa0321310:intron 30.0%
!!! ATGCTTGTCTTTTTTACGAA+TGG - chr2_4:22540896-22540915 Msa0321310:intron 30.0%
!!! TCTTTTTTACGAATGGTGTT+GGG - chr2_4:22540903-22540922 Msa0321310:intron 30.0%
! AAAACAAGGTACCAAAAACA+AGG + chr2_4:22541167-22541186 None:intergenic 30.0%
!!! GTTTTTGGTACCTTGTTTTT+TGG - chr2_4:22541168-22541187 Msa0321310:five_prime_UTR 30.0%
! AGATTTGTTTCCATGTTGTT+AGG - chr2_4:22541209-22541228 Msa0321310:five_prime_UTR 30.0%
! TCCCTTCATTTGATTTCAGA+AGG - chr2_4:22539006-22539025 Msa0321310:intron 35.0%
!! CCCTTCTGAAATCAAATGAA+GGG + chr2_4:22539010-22539029 None:intergenic 35.0%
! CCCTTCATTTGATTTCAGAA+GGG - chr2_4:22539007-22539026 Msa0321310:intron 35.0%
! CCTTCATTTGATTTCAGAAG+GGG - chr2_4:22539008-22539027 Msa0321310:intron 35.0%
CGAACAGCAAACAAGATTAA+GGG + chr2_4:22539058-22539077 None:intergenic 35.0%
TCGAACAGCAAACAAGATTA+AGG + chr2_4:22539059-22539078 None:intergenic 35.0%
AATGACCAAACCTAGATGAA+GGG + chr2_4:22539118-22539137 None:intergenic 35.0%
AAATGACCAAACCTAGATGA+AGG + chr2_4:22539119-22539138 None:intergenic 35.0%
AGGAAAGAAGAATGAAGGTT+TGG - chr2_4:22539189-22539208 Msa0321310:CDS 35.0%
! AAGAATGAAGGTTTGGAACT+TGG - chr2_4:22539196-22539215 Msa0321310:CDS 35.0%
!! AAGATTTTGATGAAGTGCGT+GGG + chr2_4:22539226-22539245 None:intergenic 35.0%
GCACTTCATCAAAATCTTGA+GGG - chr2_4:22539228-22539247 Msa0321310:CDS 35.0%
TGAGGGATTTCTACTAATTG+AGG - chr2_4:22539245-22539264 Msa0321310:CDS 35.0%
GTAGCAACACAACAACTAAA+AGG + chr2_4:22539374-22539393 None:intergenic 35.0%
TTATATAGACCCACTTGAGT+TGG - chr2_4:22539646-22539665 Msa0321310:CDS 35.0%
! ACCTTTTTAGACAAAACGGT+GGG + chr2_4:22539860-22539879 None:intergenic 35.0%
! TACCTTTTTAGACAAAACGG+TGG + chr2_4:22539861-22539880 None:intergenic 35.0%
ATGTTTATGGTAAGATGGTG+TGG - chr2_4:22539896-22539915 Msa0321310:intron 35.0%
TCTGGAAAGGTGACTTATAA+TGG - chr2_4:22539934-22539953 Msa0321310:intron 35.0%
AATGACTGTTAGAGAAACCT+TGG - chr2_4:22540029-22540048 Msa0321310:intron 35.0%
!! CTTATTTTCATAAGCTCTCC+TGG + chr2_4:22540245-22540264 None:intergenic 35.0%
!!! AGACAGTTTTAGAGAGCATA+TGG + chr2_4:22540303-22540322 None:intergenic 35.0%
! ATTTGCATGTTTTTCTCGTC+TGG + chr2_4:22540441-22540460 None:intergenic 35.0%
TTCATGTACACATCAATGTC+TGG + chr2_4:22540476-22540495 None:intergenic 35.0%
AGACATTGATGTGTACATGA+AGG - chr2_4:22540475-22540494 Msa0321310:intron 35.0%
CCTGAACATCATGAATCAAA+AGG + chr2_4:22540583-22540602 None:intergenic 35.0%
!! CCTTTTGATTCATGATGTTC+AGG - chr2_4:22540580-22540599 Msa0321310:intron 35.0%
!!! GTCTTTTTTACGAATGGTGT+TGG - chr2_4:22540902-22540921 Msa0321310:intron 35.0%
!!! GGTTTTTTAGTGAGCTTGAT+TGG - chr2_4:22541293-22541312 Msa0321310:five_prime_UTR 35.0%
! AGGGAAAAGAGTACAAGATA+GGG + chr2_4:22541341-22541360 None:intergenic 35.0%
!! CCCCTTCTGAAATCAAATGA+AGG + chr2_4:22539011-22539030 None:intergenic 40.0%
! TTCTCGTTTTCCCTTCATCT+AGG - chr2_4:22539105-22539124 Msa0321310:intron 40.0%
! GTTTTCCCTTCATCTAGGTT+TGG - chr2_4:22539110-22539129 Msa0321310:intron 40.0%
TTCCTTAACTCCTTCTTCCT+CGG + chr2_4:22539174-22539193 None:intergenic 40.0%
!! CAAGATTTTGATGAAGTGCG+TGG + chr2_4:22539227-22539246 None:intergenic 40.0%
CGCACTTCATCAAAATCTTG+AGG - chr2_4:22539227-22539246 Msa0321310:CDS 40.0%
! TTGTTGTGTTGCTACATGTG+TGG - chr2_4:22539379-22539398 Msa0321310:intron 40.0%
GTTCTATCTCCAACTCAAGT+GGG + chr2_4:22539658-22539677 None:intergenic 40.0%
AGTTCTATCTCCAACTCAAG+TGG + chr2_4:22539659-22539678 None:intergenic 40.0%
!! GGCACTGGTATATTTCAGAA+AGG - chr2_4:22539748-22539767 Msa0321310:intron 40.0%
! TCCCACCGTTTTGTCTAAAA+AGG - chr2_4:22539856-22539875 Msa0321310:intron 40.0%
! TCATGATCAGGTTTCTGGAA+AGG - chr2_4:22539921-22539940 Msa0321310:intron 40.0%
TACATAAGCGGCAGTTCTTT+GGG + chr2_4:22539983-22540002 None:intergenic 40.0%
! GTTGTTTCCATAAGTTACCC+AGG - chr2_4:22540224-22540243 Msa0321310:CDS 40.0%
TACACATCAATGTCTGGATC+GGG + chr2_4:22540470-22540489 None:intergenic 40.0%
GTACACATCAATGTCTGGAT+CGG + chr2_4:22540471-22540490 None:intergenic 40.0%
! ACATGTGCTGATACTGTTGT+AGG - chr2_4:22540766-22540785 Msa0321310:intron 40.0%
! CATGTGCTGATACTGTTGTA+GGG - chr2_4:22540767-22540786 Msa0321310:intron 40.0%
GTAGGGAATGCAATGTTAAG+AGG - chr2_4:22540784-22540803 Msa0321310:intron 40.0%
!! GCAATGTTAAGAGGTATCTC+TGG - chr2_4:22540793-22540812 Msa0321310:intron 40.0%
!! ATGTTAAGAGGTATCTCTGG+TGG - chr2_4:22540796-22540815 Msa0321310:intron 40.0%
! ATCTAACACGTGTTTTGTCG+TGG - chr2_4:22540845-22540864 Msa0321310:intron 40.0%
!! TGCGCTAGTTTATGGTGTTT+TGG - chr2_4:22540944-22540963 Msa0321310:intron 40.0%
!! GCGCTAGTTTATGGTGTTTT+GGG - chr2_4:22540945-22540964 Msa0321310:intron 40.0%
! TCATCTGTTGTGCTGATAGT+GGG - chr2_4:22540988-22541007 Msa0321310:intron 40.0%
ACCAGCTGAAAACAACAAAC+AGG + chr2_4:22541078-22541097 None:intergenic 40.0%
!!! ACCAGCAACATCCTTGTTTT+TGG - chr2_4:22541153-22541172 Msa0321310:five_prime_UTR 40.0%
ACCAAAAACAAGGATGTTGC+TGG + chr2_4:22541157-22541176 None:intergenic 40.0%
!!! GTACCTTGTTTTTTGGCTTC+TGG - chr2_4:22541175-22541194 Msa0321310:five_prime_UTR 40.0%
TGTTTCCATGTTGTTAGGTG+TGG - chr2_4:22541214-22541233 Msa0321310:five_prime_UTR 40.0%
AAAAGCCACACCTAACAACA+TGG + chr2_4:22541222-22541241 None:intergenic 40.0%
GCTGTCTTATATCAGGAAGT+AGG - chr2_4:22541269-22541288 Msa0321310:five_prime_UTR 40.0%
GTCTTATATCAGGAAGTAGG+AGG - chr2_4:22541272-22541291 Msa0321310:five_prime_UTR 40.0%
! TAGTGAGCTTGATTGGTGTT+TGG - chr2_4:22541300-22541319 Msa0321310:five_prime_UTR 40.0%
! AGTGAGCTTGATTGGTGTTT+GGG - chr2_4:22541301-22541320 Msa0321310:five_prime_UTR 40.0%
! GAGGGAAAAGAGTACAAGAT+AGG + chr2_4:22541342-22541361 None:intergenic 40.0%
TGTGTGTTGTCCTCTATGAG+TGG + chr2_4:22538949-22538968 None:intergenic 45.0%
TAGAGGACAACACACAGACT+TGG - chr2_4:22538953-22538972 Msa0321310:CDS 45.0%
AATGACTGAGCAAACGAGAG+AGG + chr2_4:22539087-22539106 None:intergenic 45.0%
TGTCTATTACCCGAGGAAGA+AGG - chr2_4:22539161-22539180 Msa0321310:CDS 45.0%
TCCTTAACTCCTTCTTCCTC+GGG + chr2_4:22539173-22539192 None:intergenic 45.0%
TGGCTTCATGATCAGGTTTC+TGG - chr2_4:22539916-22539935 Msa0321310:intron 45.0%
ACATAAGCGGCAGTTCTTTG+GGG + chr2_4:22539982-22540001 None:intergenic 45.0%
CTACATAAGCGGCAGTTCTT+TGG + chr2_4:22539984-22540003 None:intergenic 45.0%
AAGCTCTCCTGGGTAACTTA+TGG + chr2_4:22540234-22540253 None:intergenic 45.0%
! TAACACGTGTTTTGTCGTGG+AGG - chr2_4:22540848-22540867 Msa0321310:intron 45.0%
! ATGCCTTGTGCGCTAGTTTA+TGG - chr2_4:22540936-22540955 Msa0321310:intron 45.0%
ACACCATAAACTAGCGCACA+AGG + chr2_4:22540942-22540961 None:intergenic 45.0%
! GTCATCTGTTGTGCTGATAG+TGG - chr2_4:22540987-22541006 Msa0321310:intron 45.0%
! CATCTGTTGTGCTGATAGTG+GGG - chr2_4:22540989-22541008 Msa0321310:intron 45.0%
!! ATCTGTTGTGCTGATAGTGG+GGG - chr2_4:22540990-22541009 Msa0321310:intron 45.0%
!! CTGCTATGGTGCAGTTTTGT+TGG - chr2_4:22541013-22541032 Msa0321310:intron 45.0%
!!! GCCTGTTTGTTGTTTTCAGC+TGG - chr2_4:22541074-22541093 Msa0321310:five_prime_UTR 45.0%
CGACCAGAAGCCAAAAAACA+AGG + chr2_4:22541181-22541200 None:intergenic 45.0%
TCCTGCTGCTGTCTTATATC+AGG - chr2_4:22541262-22541281 Msa0321310:five_prime_UTR 45.0%
TCCTGATATAAGACAGCAGC+AGG + chr2_4:22541266-22541285 None:intergenic 45.0%
! CTTGTACTCTTTTCCCTCCT+CGG - chr2_4:22541344-22541363 Msa0321310:five_prime_UTR 45.0%
TTGTCCTCTATGAGTGGTGC+TGG + chr2_4:22538943-22538962 None:intergenic 50.0%
AGTCGGTTGTCTATTACCCG+AGG - chr2_4:22539154-22539173 Msa0321310:CDS 50.0%
ACCCGAGGAAGAAGGAGTTA+AGG - chr2_4:22539169-22539188 Msa0321310:CDS 50.0%
GATGGTGTGGCTTCATGATC+AGG - chr2_4:22539909-22539928 Msa0321310:intron 50.0%
CATAAGCGGCAGTTCTTTGG+GGG + chr2_4:22539981-22540000 None:intergenic 50.0%
TCCTTGGACTCTAGCTGAGA+AGG + chr2_4:22540055-22540074 None:intergenic 50.0%
TCAGCTAGAGTCCAAGGAGT+TGG - chr2_4:22540057-22540076 Msa0321310:intron 50.0%
CAGCTAGAGTCCAAGGAGTT+GGG - chr2_4:22540058-22540077 Msa0321310:intron 50.0%
GTTCAGGCTGTAGCAACTGA+AGG - chr2_4:22540596-22540615 Msa0321310:intron 50.0%
!!! AGAGGTGGTTGCTGTTTTGC+AGG - chr2_4:22541050-22541069 Msa0321310:five_prime_UTR 50.0%
!! GCTGCAGAAGCTTGCTGTTT+CGG - chr2_4:22541116-22541135 Msa0321310:five_prime_UTR 50.0%
GTTGCTGGTGCAACACAGAA+AGG + chr2_4:22541142-22541161 None:intergenic 50.0%
! TCCTCTATGAGTGGTGCTGG+CGG + chr2_4:22538940-22538959 None:intergenic 55.0%
GACTCTAGCTGAGAAGGCCA+AGG + chr2_4:22540049-22540068 None:intergenic 55.0%
GCCTTCTCAGCTAGAGTCCA+AGG - chr2_4:22540051-22540070 Msa0321310:intron 55.0%
CATAACGCAGCCCAACTCCT+TGG + chr2_4:22540071-22540090 None:intergenic 55.0%
CAAGGAGTTGGGCTGCGTTA+TGG - chr2_4:22540069-22540088 Msa0321310:intron 55.0%
! CACGTGTTTTGTCGTGGAGG+TGG - chr2_4:22540851-22540870 Msa0321310:intron 55.0%
! CGAATGGTGTTGGGATCCCA+TGG - chr2_4:22540912-22540931 Msa0321310:intron 55.0%
TAGCGCACAAGGCATGCCAT+GGG + chr2_4:22540931-22540950 None:intergenic 55.0%
ATGACCACAGCAGCGCACAA+AGG + chr2_4:22540972-22540991 None:intergenic 55.0%
!!! GGTGCAGTTTTGTTGGCCTG+TGG - chr2_4:22541020-22541039 Msa0321310:intron 55.0%
!! TTGGCCTGTGGTGCTATCAG+AGG - chr2_4:22541032-22541051 Msa0321310:five_prime_UTR 55.0%
ACCACCTCTGATAGCACCAC+AGG + chr2_4:22541039-22541058 None:intergenic 55.0%
! TACTCTTTTCCCTCCTCGGC+AGG - chr2_4:22541348-22541367 Msa0321310:five_prime_UTR 55.0%
TCCGCCAGCACCACTCATAG+AGG - chr2_4:22538936-22538955 Msa0321310:CDS 60.0%
CTAGCGCACAAGGCATGCCA+TGG + chr2_4:22540932-22540951 None:intergenic 60.0%
!! GCTGATAGTGGGGGCTGCTA+TGG - chr2_4:22540999-22541018 Msa0321310:intron 60.0%
!! GCCTGTGGTGCTATCAGAGG+TGG - chr2_4:22541035-22541054 Msa0321310:five_prime_UTR 60.0%
GGGTCCTTTGTGCGCTGCTG+TGG - chr2_4:22540965-22540984 Msa0321310:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 22538917 22541375 22538917 ID=Msa0321310;Name=Msa0321310
chr2_4 mRNA 22538917 22541375 22538917 ID=Msa0321310-mRNA-1;Parent=Msa0321310;Name=Msa0321310-mRNA-1;_AED=0.23;_eAED=0.23;_QI=382|0.66|0.57|1|0.83|0.71|7|0|237
chr2_4 exon 22538917 22539008 22538917 ID=Msa0321310-mRNA-1:exon:8303;Parent=Msa0321310-mRNA-1
chr2_4 exon 22539118 22539285 22539118 ID=Msa0321310-mRNA-1:exon:8302;Parent=Msa0321310-mRNA-1
chr2_4 exon 22539400 22539541 22539400 ID=Msa0321310-mRNA-1:exon:8301;Parent=Msa0321310-mRNA-1
chr2_4 exon 22539637 22539690 22539637 ID=Msa0321310-mRNA-1:exon:8300;Parent=Msa0321310-mRNA-1
chr2_4 exon 22539796 22539872 22539796 ID=Msa0321310-mRNA-1:exon:8299;Parent=Msa0321310-mRNA-1
chr2_4 exon 22540202 22540414 22540202 ID=Msa0321310-mRNA-1:exon:8298;Parent=Msa0321310-mRNA-1
chr2_4 exon 22541026 22541375 22541026 ID=Msa0321310-mRNA-1:exon:8297;Parent=Msa0321310-mRNA-1
chr2_4 five_prime_UTR 22541026 22541375 22541026 ID=Msa0321310-mRNA-1:five_prime_utr;Parent=Msa0321310-mRNA-1
chr2_4 five_prime_UTR 22540383 22540414 22540383 ID=Msa0321310-mRNA-1:five_prime_utr;Parent=Msa0321310-mRNA-1
chr2_4 CDS 22540202 22540382 22540202 ID=Msa0321310-mRNA-1:cds;Parent=Msa0321310-mRNA-1
chr2_4 CDS 22539796 22539872 22539796 ID=Msa0321310-mRNA-1:cds;Parent=Msa0321310-mRNA-1
chr2_4 CDS 22539637 22539690 22539637 ID=Msa0321310-mRNA-1:cds;Parent=Msa0321310-mRNA-1
chr2_4 CDS 22539400 22539541 22539400 ID=Msa0321310-mRNA-1:cds;Parent=Msa0321310-mRNA-1
chr2_4 CDS 22539118 22539285 22539118 ID=Msa0321310-mRNA-1:cds;Parent=Msa0321310-mRNA-1
chr2_4 CDS 22538917 22539008 22538917 ID=Msa0321310-mRNA-1:cds;Parent=Msa0321310-mRNA-1
Gene Sequence

>Msa0321310

ATGGTGTGGCTTCATGATCAGGTTTCTGGAAAGGTGACTTATAATGGTCATGAGATGAGTGAGTTTGTCCCCCAAAGAACTGCCGCTTATGTAGATCAAAATGATCTTCACATTGCAGAAATGACTGTTAGAGAAACCTTGGCCTTCTCAGCTAGAGTCCAAGGAGTTGGGCTGCGTTATGACTTGCTAGCAGAGCTGTCCAGACGAGAAAAACATGCAAATATCATGCCCGATCCAGACATTGATGTGTACATGAAGGCTGTAGCAACTGAAGGCCAGAAAGCAAATTTGATAACATATTATGTCCTAAGGATTTTGGGACTAGAGACATGTGCTGATACTGTTGTAGGGAATGCAATGTTAAGAGGTATCTCTGGTGGACAAAAGAAACGTGTTAAAAGGTGGTATCTAACACGTGTTTTGTCGTGGAGGTGGTATCTAACACGTGTTAAAATGGGGGCTGCTATGGTGCAGTTTTGTTGGCCTGTGGTGCTATCAGAGGTGGTTGCTGTTTTGCAGGTGCCTGTTTGTTGTTTTCAGCTGGTTCAAGTTCGTGTTCGAGTGCTGCAGAAGCTTGCTGTTTCGGCCTTTCTGTGTTGCACCAGCAACATCCTTGTTTTTGGAAGTAGGAGGTTTTTTAGTGAGCTTGATTGGTGTTTGGGTGCTTTTTCATTAGCCCTATCTTGTACTCTTTTCCCTCCTCGGCAGGTTTAG

Protein sequence

>Msa0321310

MVWLHDQVSGKVTYNGHEMSEFVPQRTAAYVDQNDLHIAEMTVRETLAFSARVQGVGLRYDLLAELSRREKHANIMPDPDIDVYMKAVATEGQKANLITYYVLRILGLETCADTVVGNAMLRGISGGQKKRVKRWYLTRVLSWRWYLTRVKMGAAMVQFCWPVVLSEVVAVLQVPVCCFQLVQVRVRVLQKLAVSAFLCCTSNILVFGSRRFFSELDWCLGAFSLALSCTLFPPRQV*