Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602980 | XP_003589014.1 | 91.615 | 322 | 26 | 1 | 1 | 322 | 1 | 321 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602980 | sp|Q9FFJ8|LIMYB_ARATH | 24.691 | 324 | 205 | 7 | 6 | 322 | 156 | 447 | 8.42e-23 | 101 |
| Msa0602980 | sp|Q9FFJ8|LIMYB_ARATH | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.11e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018070 | Msa0602980 | 0.814551 | 1.454671e-51 | -8.615850e-47 |
| Msa0021210 | Msa0602980 | 0.817494 | 3.203196e-52 | -8.615850e-47 |
| Msa0031520 | Msa0602980 | 0.966338 | 8.684320e-126 | -8.615850e-47 |
| Msa0035150 | Msa0602980 | 0.801945 | 7.086365e-49 | -8.615850e-47 |
| Msa0042920 | Msa0602980 | 0.814144 | 1.789233e-51 | -8.615850e-47 |
| Msa0052400 | Msa0602980 | 0.802938 | 4.424196e-49 | -8.615850e-47 |
| Msa0089820 | Msa0602980 | 0.815520 | 8.863526e-52 | -8.615850e-47 |
| Msa0114430 | Msa0602980 | 0.819022 | 1.444236e-52 | -8.615850e-47 |
| Msa0602980 | Msa0615010 | 0.806269 | 8.928121e-50 | -8.615850e-47 |
| Msa0602980 | Msa0645300 | 0.924830 | 4.169100e-90 | -8.615850e-47 |
| Msa0602980 | Msa0682680 | 0.801677 | 8.042188e-49 | -8.615850e-47 |
| Msa0602980 | Msa0701010 | 0.817109 | 3.909795e-52 | -8.615850e-47 |
| Msa0602980 | Msa0703780 | 0.820554 | 6.452654e-53 | -8.615850e-47 |
| Msa0602980 | Msa0705190 | 0.802156 | 6.413516e-49 | -8.615850e-47 |
| Msa0602980 | Msa0718100 | 0.810584 | 1.071989e-50 | -8.615850e-47 |
| Msa0602980 | Msa0750650 | 0.818067 | 2.377828e-52 | -8.615850e-47 |
| Msa0602980 | Msa0755180 | 0.838405 | 2.932413e-57 | -8.615850e-47 |
| Msa0602980 | Msa0767730 | 0.801904 | 7.224629e-49 | -8.615850e-47 |
| Msa0602980 | Msa0768290 | 0.810324 | 1.219881e-50 | -8.615850e-47 |
| Msa0602980 | Msa0768370 | 0.823169 | 1.600412e-53 | -8.615850e-47 |
| Msa0602980 | Msa0773180 | 0.838957 | 2.111738e-57 | -8.615850e-47 |
| Msa0602980 | Msa0773850 | 0.811955 | 5.404434e-51 | -8.615850e-47 |
| Msa0602980 | Msa0804810 | 0.891767 | 2.939731e-74 | -8.615850e-47 |
| Msa0602980 | Msa0810270 | 0.805283 | 1.438376e-49 | -8.615850e-47 |
| Msa0602980 | Msa0844420 | 0.830476 | 2.875087e-55 | -8.615850e-47 |
| Msa0602980 | Msa0844440 | 0.801783 | 7.649227e-49 | -8.615850e-47 |
| Msa0602980 | Msa0844450 | 0.806312 | 8.742940e-50 | -8.615850e-47 |
| Msa0602980 | Msa0844490 | 0.857082 | 2.079410e-62 | -8.615850e-47 |
| Msa0602980 | Msa0848990 | 0.801429 | 9.041943e-49 | -8.615850e-47 |
| Msa0602980 | Msa0849030 | 0.813317 | 2.720970e-51 | -8.615850e-47 |
| Msa0602980 | Msa0853520 | 0.808101 | 3.653480e-50 | -8.615850e-47 |
| Msa0602980 | Msa0857640 | 0.823469 | 1.361975e-53 | -8.615850e-47 |
| Msa0602980 | Msa0877250 | 0.829145 | 6.063522e-55 | -8.615850e-47 |
| Msa0602980 | Msa0894710 | 0.802687 | 4.984234e-49 | -8.615850e-47 |
| Msa0602980 | Msa0897330 | 0.821510 | 3.885388e-53 | -8.615850e-47 |
| Msa0602980 | Msa0899430 | 0.830605 | 2.672531e-55 | -8.615850e-47 |
| Msa0602980 | Msa0899450 | 0.825842 | 3.760444e-54 | -8.615850e-47 |
| Msa0602980 | Msa0901070 | 0.801821 | 7.513641e-49 | -8.615850e-47 |
| Msa0602980 | Msa0903620 | 0.803972 | 2.700791e-49 | -8.615850e-47 |
| Msa0602980 | Msa0914270 | 0.840378 | 9.012569e-58 | -8.615850e-47 |
| Msa0602980 | Msa0927380 | 0.836557 | 8.725387e-57 | -8.615850e-47 |
| Msa0602980 | Msa0936300 | 0.835607 | 1.520764e-56 | -8.615850e-47 |
| Msa0602980 | Msa0948320 | 0.964943 | 5.744862e-124 | -8.615850e-47 |
| Msa0602980 | Msa0953120 | 0.800458 | 1.427805e-48 | -8.615850e-47 |
| Msa0602980 | Msa0958550 | 0.823690 | 1.209194e-53 | -8.615850e-47 |
| Msa0602980 | Msa0960390 | 0.800351 | 1.501485e-48 | -8.615850e-47 |
| Msa0602980 | Msa0964900 | 0.810053 | 1.395802e-50 | -8.615850e-47 |
| Msa0602980 | Msa0966750 | 0.813879 | 2.047294e-51 | -8.615850e-47 |
| Msa0602980 | Msa0969370 | 0.803458 | 3.453409e-49 | -8.615850e-47 |
| Msa0602980 | Msa0969810 | 0.807164 | 5.777621e-50 | -8.615850e-47 |
| Msa0602980 | Msa0973100 | 0.838530 | 2.721946e-57 | -8.615850e-47 |
| Msa0602980 | Msa0974080 | 0.852348 | 4.898037e-61 | -8.615850e-47 |
| Msa0602980 | Msa1000890 | 0.838783 | 2.341660e-57 | -8.615850e-47 |
| Msa0602980 | Msa1000900 | 0.824560 | 7.555971e-54 | -8.615850e-47 |
| Msa0602980 | Msa1000930 | 0.802968 | 4.361593e-49 | -8.615850e-47 |
| Msa0602980 | Msa1001390 | 0.804576 | 2.021639e-49 | -8.615850e-47 |
| Msa0602980 | Msa1006010 | -0.801265 | 9.768261e-49 | -8.615850e-47 |
| Msa0602980 | Msa1063420 | 0.807066 | 6.059594e-50 | -8.615850e-47 |
| Msa0602980 | Msa1098250 | 0.810691 | 1.016176e-50 | -8.615850e-47 |
| Msa0602980 | Msa1111870 | 0.824151 | 9.427360e-54 | -8.615850e-47 |
| Msa0602980 | Msa1113170 | 0.809616 | 1.733032e-50 | -8.615850e-47 |
| Msa0602980 | Msa1121480 | 0.823209 | 1.566413e-53 | -8.615850e-47 |
| Msa0602980 | Msa1121490 | 0.831014 | 2.121805e-55 | -8.615850e-47 |
| Msa0602980 | Msa1137570 | 0.830555 | 2.749982e-55 | -8.615850e-47 |
| Msa0602980 | Msa1142670 | 0.815914 | 7.242006e-52 | -8.615850e-47 |
| Msa0602980 | Msa1177560 | 0.809877 | 1.522503e-50 | -8.615850e-47 |
| Msa0602980 | Msa1186360 | 0.810311 | 1.227737e-50 | -8.615850e-47 |
| Msa0602980 | Msa1209530 | 0.805512 | 1.288134e-49 | -8.615850e-47 |
| Msa0602980 | Msa1213140 | 0.802565 | 5.281539e-49 | -8.615850e-47 |
| Msa0602980 | Msa1217650 | -0.825413 | 4.751774e-54 | -8.615850e-47 |
| Msa0602980 | Msa1227730 | 0.833076 | 6.563407e-56 | -8.615850e-47 |
| Msa0602980 | Msa1232740 | 0.817114 | 3.900357e-52 | -8.615850e-47 |
| Msa0602980 | Msa1237020 | 0.821768 | 3.388143e-53 | -8.615850e-47 |
| Msa0602980 | Msa1270660 | 0.803829 | 2.892133e-49 | -8.615850e-47 |
| Msa0602980 | Msa1270730 | 0.801400 | 9.165433e-49 | -8.615850e-47 |
| Msa0602980 | Msa1271130 | 0.801332 | 9.466006e-49 | -8.615850e-47 |
| Msa0602980 | Msa1276600 | 0.815947 | 7.119004e-52 | -8.615850e-47 |
| Msa0602980 | Msa1284680 | 0.808198 | 3.484474e-50 | -8.615850e-47 |
| Msa0602980 | Msa1286800 | 0.839381 | 1.639304e-57 | -8.615850e-47 |
| Msa0602980 | Msa1287190 | 0.837621 | 4.666783e-57 | -8.615850e-47 |
| Msa0602980 | Msa1287220 | 0.800085 | 1.700722e-48 | -8.615850e-47 |
| Msa0602980 | Msa1313320 | 0.825867 | 3.709291e-54 | -8.615850e-47 |
| Msa0602980 | Msa1323690 | 0.800250 | 1.573759e-48 | -8.615850e-47 |
| Msa0602980 | Msa1331080 | 0.829740 | 4.347243e-55 | -8.615850e-47 |
| Msa0602980 | Msa1345220 | 0.802864 | 4.581442e-49 | -8.615850e-47 |
| Msa0602980 | Msa1366810 | 0.835032 | 2.125106e-56 | -8.615850e-47 |
| Msa0602980 | Msa1366970 | 0.849660 | 2.803158e-60 | -8.615850e-47 |
| Msa0602980 | Msa1388160 | 0.813250 | 2.815638e-51 | -8.615850e-47 |
| Msa0602980 | Msa1390700 | 0.826071 | 3.316975e-54 | -8.615850e-47 |
| Msa0602980 | Msa1392910 | 0.818347 | 2.055546e-52 | -8.615850e-47 |
| Msa0602980 | Msa1394310 | 0.831516 | 1.597164e-55 | -8.615850e-47 |
| Msa0602980 | Msa1412530 | 0.806567 | 7.726277e-50 | -8.615850e-47 |
| Msa0602980 | Msa1419990 | 0.808939 | 2.420659e-50 | -8.615850e-47 |
| Msa0602980 | Msa1420820 | 0.814477 | 1.510351e-51 | -8.615850e-47 |
| Msa0602980 | Msa1458750 | 0.806964 | 6.369143e-50 | -8.615850e-47 |
| Msa0135660 | Msa0602980 | 0.878621 | 2.422477e-69 | -8.615850e-47 |
| Msa0150230 | Msa0602980 | 0.801819 | 7.522477e-49 | -8.615850e-47 |
| Msa0167980 | Msa0602980 | 0.801243 | 9.873184e-49 | -8.615850e-47 |
| Msa0170220 | Msa0602980 | 0.803311 | 3.703738e-49 | -8.615850e-47 |
| Msa0180500 | Msa0602980 | 0.825306 | 5.036564e-54 | -8.615850e-47 |
| Msa0198910 | Msa0602980 | 0.880131 | 7.062975e-70 | -8.615850e-47 |
| Msa0233080 | Msa0602980 | 0.838213 | 3.285749e-57 | -8.615850e-47 |
| Msa0236510 | Msa0602980 | -0.807849 | 4.133765e-50 | -8.615850e-47 |
| Msa0381610 | Msa0602980 | -0.807084 | 6.008198e-50 | -8.615850e-47 |
| Msa0385840 | Msa0602980 | 0.817375 | 3.407861e-52 | -8.615850e-47 |
| Msa0387280 | Msa0602980 | 0.801048 | 1.082136e-48 | -8.615850e-47 |
| Msa0390530 | Msa0602980 | 0.800684 | 1.284047e-48 | -8.615850e-47 |
| Msa0413410 | Msa0602980 | 0.836824 | 7.459260e-57 | -8.615850e-47 |
| Msa0444750 | Msa0602980 | -0.812842 | 3.458317e-51 | -8.615850e-47 |
| Msa0450400 | Msa0602980 | -0.803703 | 3.071515e-49 | -8.615850e-47 |
| Msa0251640 | Msa0602980 | 0.909478 | 5.447646e-82 | -8.615850e-47 |
| Msa0257490 | Msa0602980 | 0.801597 | 8.351923e-49 | -8.615850e-47 |
| Msa0259210 | Msa0602980 | 0.823279 | 1.508804e-53 | -8.615850e-47 |
| Msa0271770 | Msa0602980 | 0.831461 | 1.647506e-55 | -8.615850e-47 |
| Msa0278190 | Msa0602980 | 0.826604 | 2.477096e-54 | -8.615850e-47 |
| Msa0289330 | Msa0602980 | 0.802488 | 5.477635e-49 | -8.615850e-47 |
| Msa0336310 | Msa0602980 | 0.801700 | 7.957666e-49 | -8.615850e-47 |
| Msa0336320 | Msa0602980 | 0.832064 | 1.169724e-55 | -8.615850e-47 |
| Msa0342750 | Msa0602980 | 0.809463 | 1.869062e-50 | -8.615850e-47 |
| Msa0343850 | Msa0602980 | 0.824739 | 6.854848e-54 | -8.615850e-47 |
| Msa0350320 | Msa0602980 | -0.807896 | 4.040357e-50 | -8.615850e-47 |
| Msa0490140 | Msa0602980 | 0.944913 | 8.121698e-104 | -8.615850e-47 |
| Msa0514320 | Msa0602980 | 0.939089 | 2.282740e-99 | -8.615850e-47 |
| Msa0519640 | Msa0602980 | 0.816507 | 5.335377e-52 | -8.615850e-47 |
| Msa0521740 | Msa0602980 | 0.809096 | 2.239972e-50 | -8.615850e-47 |
| Msa0523940 | Msa0602980 | 0.825648 | 4.179455e-54 | -8.615850e-47 |
| Msa0545700 | Msa0602980 | 0.811771 | 5.926679e-51 | -8.615850e-47 |
| Msa0585230 | Msa0602980 | 0.804957 | 1.683509e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602980 | MtrunA17_Chr2g0285481 | 62.654 | 324 | 115 | 4 | 2 | 321 | 1 | 322 | 6.29e-143 | 406 |
| Msa0602980 | MtrunA17_Chr1g0172741 | 62.037 | 324 | 117 | 4 | 2 | 321 | 1 | 322 | 1.95e-141 | 402 |
| Msa0602980 | MtrunA17_Chr8g0334551 | 57.317 | 328 | 133 | 2 | 1 | 321 | 1 | 328 | 4.25e-130 | 374 |
| Msa0602980 | MtrunA17_Chr2g0321391 | 66.803 | 244 | 78 | 2 | 79 | 321 | 3 | 244 | 6.19e-116 | 335 |
| Msa0602980 | MtrunA17_Chr5g0422701 | 64.677 | 201 | 68 | 2 | 122 | 321 | 14 | 212 | 5.88e-87 | 260 |
| Msa0602980 | MtrunA17_Chr2g0295811 | 40.724 | 221 | 113 | 6 | 119 | 321 | 10 | 230 | 1.07e-43 | 150 |
| Msa0602980 | MtrunA17_Chr5g0422691 | 63.043 | 92 | 33 | 1 | 13 | 103 | 14 | 105 | 2.87e-35 | 124 |
| Msa0602980 | MtrunA17_Chr2g0295611 | 62.500 | 96 | 35 | 1 | 100 | 194 | 1 | 96 | 3.27e-33 | 118 |
| Msa0602980 | MtrunA17_Chr8g0362511 | 30.097 | 309 | 181 | 10 | 21 | 310 | 67 | 359 | 6.33e-28 | 111 |
| Msa0602980 | MtrunA17_Chr5g0402821 | 29.430 | 316 | 193 | 9 | 22 | 315 | 16 | 323 | 2.40e-27 | 109 |
| Msa0602980 | MtrunA17_Chr3g0113081 | 38.158 | 152 | 85 | 2 | 22 | 173 | 185 | 327 | 5.30e-25 | 105 |
| Msa0602980 | MtrunA17_Chr3g0113081 | 28.155 | 309 | 160 | 8 | 12 | 311 | 373 | 628 | 5.37e-24 | 102 |
| Msa0602980 | MtrunA17_Chr3g0113081 | 35.821 | 134 | 79 | 2 | 11 | 144 | 3 | 129 | 4.36e-17 | 82.0 |
| Msa0602980 | MtrunA17_Chr5g0405761 | 28.667 | 300 | 182 | 8 | 19 | 312 | 47 | 320 | 2.30e-23 | 98.6 |
| Msa0602980 | MtrunA17_Chr6g0469501 | 63.793 | 58 | 21 | 0 | 264 | 321 | 1 | 58 | 7.98e-22 | 87.0 |
| Msa0602980 | MtrunA17_Chr8g0360271 | 24.915 | 293 | 184 | 10 | 33 | 310 | 21 | 292 | 4.69e-15 | 74.3 |
| Msa0602980 | MtrunA17_Chr1g0176881 | 29.412 | 136 | 95 | 1 | 21 | 156 | 21 | 155 | 6.28e-15 | 75.5 |
| Msa0602980 | MtrunA17_Chr1g0176881 | 29.655 | 145 | 99 | 2 | 2 | 146 | 175 | 316 | 7.62e-15 | 75.1 |
| Msa0602980 | MtrunA17_Chr1g0156481 | 23.102 | 303 | 203 | 8 | 19 | 311 | 12 | 294 | 1.96e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602980 | AT5G05800.1 | 24.691 | 324 | 205 | 7 | 6 | 322 | 156 | 447 | 8.56e-24 | 101 |
| Msa0602980 | AT5G05800.1 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.16e-17 | 82.4 |
| Msa0602980 | AT5G05800.5 | 24.691 | 324 | 205 | 7 | 6 | 322 | 156 | 447 | 8.56e-24 | 101 |
| Msa0602980 | AT5G05800.5 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.16e-17 | 82.4 |
| Msa0602980 | AT5G05800.3 | 24.691 | 324 | 205 | 7 | 6 | 322 | 156 | 447 | 8.56e-24 | 101 |
| Msa0602980 | AT5G05800.3 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.16e-17 | 82.4 |
| Msa0602980 | AT5G05800.2 | 24.691 | 324 | 205 | 7 | 6 | 322 | 156 | 447 | 8.56e-24 | 101 |
| Msa0602980 | AT5G05800.2 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.16e-17 | 82.4 |
| Msa0602980 | AT5G05800.4 | 24.691 | 324 | 205 | 7 | 6 | 322 | 156 | 447 | 8.56e-24 | 101 |
| Msa0602980 | AT5G05800.4 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.16e-17 | 82.4 |
| Msa0602980 | AT3G11290.2 | 25.566 | 309 | 189 | 8 | 20 | 310 | 163 | 448 | 9.77e-19 | 87.0 |
| Msa0602980 | AT3G11290.1 | 25.566 | 309 | 189 | 8 | 20 | 310 | 163 | 448 | 9.77e-19 | 87.0 |
| Msa0602980 | AT2G24960.1 | 29.197 | 137 | 96 | 1 | 8 | 144 | 155 | 290 | 4.98e-15 | 76.3 |
| Msa0602980 | AT2G24960.1 | 25.874 | 143 | 105 | 1 | 12 | 154 | 2 | 143 | 7.23e-11 | 63.5 |
| Msa0602980 | AT2G24960.2 | 29.197 | 137 | 96 | 1 | 8 | 144 | 155 | 290 | 5.65e-15 | 76.3 |
| Msa0602980 | AT2G24960.2 | 27.273 | 143 | 103 | 1 | 12 | 154 | 314 | 455 | 1.83e-12 | 68.6 |
| Msa0602980 | AT2G24960.2 | 26.667 | 135 | 98 | 1 | 20 | 154 | 10 | 143 | 8.81e-11 | 63.5 |
| Msa0602980 | AT3G11310.1 | 33.566 | 143 | 89 | 2 | 20 | 157 | 171 | 312 | 3.18e-13 | 70.9 |
| Msa0602980 | AT4G02210.1 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 1.34e-11 | 65.5 |
| Msa0602980 | AT4G02210.2 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 1.34e-11 | 65.5 |
Find 74 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCATGGTATAACTTATT+TGG | 0.134716 | 4_2:+47118789 | Msa0602980:CDS |
| ACAACTGAATTTGGAAATAT+TGG | 0.148866 | 4_2:+47119192 | Msa0602980:CDS |
| GTTGGAGCAACAACTGAATT+TGG | 0.213211 | 4_2:+47119183 | Msa0602980:CDS |
| GGCAGAAAACAAAAGCTATT+TGG | 0.232374 | 4_2:+47118580 | Msa0602980:CDS |
| AACTTATTTGGGAGAGAAAC+TGG | 0.287945 | 4_2:+47118801 | Msa0602980:CDS |
| TTGGGAGAGAAACTGGATTA+GGG | 0.298488 | 4_2:+47118808 | Msa0602980:CDS |
| TTTGGGAGAGAAACTGGATT+AGG | 0.315464 | 4_2:+47118807 | Msa0602980:CDS |
| GAAATAAACATCTCCCTTGC+AGG | 0.323302 | 4_2:-47119483 | None:intergenic |
| AAACTTTGTGAAAGCATGTT+TGG | 0.334075 | 4_2:+47118620 | Msa0602980:CDS |
| GCAGAAAACAAAAGCTATTT+GGG | 0.339319 | 4_2:+47118581 | Msa0602980:CDS |
| GTCCGGTTAAATTATGAAAT+CGG | 0.352053 | 4_2:-47118710 | None:intergenic |
| TGTATTACATACCAGTTGTT+TGG | 0.352266 | 4_2:-47118880 | None:intergenic |
| CAACTGAATTTGGAAATATT+GGG | 0.356640 | 4_2:+47119193 | Msa0602980:CDS |
| GAGCATGGTATAACTTATTT+GGG | 0.363157 | 4_2:+47118790 | Msa0602980:CDS |
| TTCAAGGATGTAGTGGCTAA+TGG | 0.366838 | 4_2:+47119042 | Msa0602980:CDS |
| CAGAGGAGAAGAGGTTGAAT+TGG | 0.373243 | 4_2:+47119517 | Msa0602980:CDS |
| GTCCGATTTCATAATTTAAC+CGG | 0.374307 | 4_2:+47118708 | Msa0602980:CDS |
| TTGGTCTCCCACCACTCATC+AGG | 0.410369 | 4_2:-47118861 | None:intergenic |
| GTTCCTCCTCACCTAGTGAT+GGG | 0.415978 | 4_2:+47118556 | Msa0602980:CDS |
| GAAAAGTGTGGTTAACTCAT+TGG | 0.420206 | 4_2:-47119022 | None:intergenic |
| AAAAGGGTGGACAAATATTA+GGG | 0.422862 | 4_2:+47118686 | Msa0602980:CDS |
| CGTTCTCGCAATGATGTTGC+GGG | 0.438182 | 4_2:+47119357 | Msa0602980:CDS |
| GGTTCCTCCTCACCTAGTGA+TGG | 0.438340 | 4_2:+47118555 | Msa0602980:CDS |
| TTCCTCCTCACCTAGTGATG+GGG | 0.476214 | 4_2:+47118557 | Msa0602980:CDS |
| AGAAGGCTCAACTAAAGAAT+AGG | 0.479515 | 4_2:+47118742 | Msa0602980:CDS |
| TCCTCCTCACCTAGTGATGG+GGG | 0.484199 | 4_2:+47118558 | Msa0602980:CDS |
| GATGAGGCAGTGGCTGTAGA+AGG | 0.502147 | 4_2:+47119135 | Msa0602980:CDS |
| AGCCTTCTCATACTTCAGTC+CGG | 0.504703 | 4_2:-47118727 | None:intergenic |
| CGTACCAACACGTTCTCCCT+TGG | 0.505137 | 4_2:-47118652 | None:intergenic |
| GTTGCGGGTAATGCATCTAT+TGG | 0.516946 | 4_2:+47119372 | Msa0602980:CDS |
| TGGCTAATGGAGAGTACACT+TGG | 0.522261 | 4_2:+47119055 | Msa0602980:CDS |
| GCAGTGGCTGTAGAAGGATC+TGG | 0.527670 | 4_2:+47119141 | Msa0602980:CDS |
| ATGACAGTCTGAGAAAGGAT+TGG | 0.531322 | 4_2:+47118766 | Msa0602980:CDS |
| CTTCTCCTCTGAACCTCGTA+GGG | 0.535159 | 4_2:-47119505 | None:intergenic |
| GTGGTGGGAGACCAAACAAC+TGG | 0.536532 | 4_2:+47118869 | Msa0602980:CDS |
| AGGTTAGTCATGAACGGCAG+TGG | 0.537233 | 4_2:-47119561 | None:intergenic |
| TCGTTCTCGCAATGATGTTG+CGG | 0.542049 | 4_2:+47119356 | Msa0602980:CDS |
| TAGGTATGACAGTCTGAGAA+AGG | 0.543958 | 4_2:+47118761 | Msa0602980:CDS |
| TGTTGATGTTTAAGCCTGCA+AGG | 0.555386 | 4_2:+47119469 | Msa0602980:CDS |
| TATTTCCCTACGAGGTTCAG+AGG | 0.555424 | 4_2:+47119500 | Msa0602980:CDS |
| GGAGAGAAACTGGATTAGGG+TGG | 0.557144 | 4_2:+47118811 | Msa0602980:CDS |
| ATCATTTGAGACTTCATCCA+TGG | 0.558263 | 4_2:-47119418 | None:intergenic |
| GTCAAAAGAGTGGTGAGAAG+AGG | 0.562252 | 4_2:+47119241 | Msa0602980:CDS |
| CATGACTAACCTGTGTGACT+AGG | 0.562786 | 4_2:+47119572 | Msa0602980:CDS |
| TACGAGGTTCAGAGGAGAAG+AGG | 0.567800 | 4_2:+47119508 | Msa0602980:CDS |
| ATGTTTGGAGCAAGTCTCCA+AGG | 0.570714 | 4_2:+47118635 | Msa0602980:CDS |
| TACACTTGGGCACCATCATG+TGG | 0.573130 | 4_2:+47119069 | Msa0602980:CDS |
| GTTGATGTTTAAGCCTGCAA+GGG | 0.577984 | 4_2:+47119470 | Msa0602980:CDS |
| TGCATCTATTGGTGAAGTGA+TGG | 0.591393 | 4_2:+47119383 | Msa0602980:CDS |
| TCTTCTCCTCTGAACCTCGT+AGG | 0.595412 | 4_2:-47119506 | None:intergenic |
| GATAGCGAGGATGCAAGTGT+TGG | 0.599986 | 4_2:+47119165 | Msa0602980:CDS |
| GATGGCAATACCCCACATGA+TGG | 0.601622 | 4_2:-47119081 | None:intergenic |
| CCTCCTCACCTAGTGATGGG+GGG | 0.608278 | 4_2:+47118559 | Msa0602980:CDS |
| TGAGAAAGGATTGGAGAGCA+TGG | 0.612846 | 4_2:+47118775 | Msa0602980:CDS |
| GCTACAACAGTGTTGTTCAC+AGG | 0.614063 | 4_2:-47118837 | None:intergenic |
| GTGGTTAACTCATTGGCGAA+TGG | 0.617203 | 4_2:-47119015 | None:intergenic |
| AGAAGGATCTGGCGATAGCG+AGG | 0.624952 | 4_2:+47119152 | Msa0602980:CDS |
| AACCGGACTGAAGTATGAGA+AGG | 0.626830 | 4_2:+47118725 | Msa0602980:CDS |
| ACACTTGGGCACCATCATGT+GGG | 0.626839 | 4_2:+47119070 | Msa0602980:CDS |
| CACTACATCCTTGAAAAGTG+TGG | 0.627204 | 4_2:-47119034 | None:intergenic |
| GGTTAGTCATGAACGGCAGT+GGG | 0.628971 | 4_2:-47119560 | None:intergenic |
| AAAACTGATGGTCAAAAGAG+TGG | 0.632803 | 4_2:+47119231 | Msa0602980:CDS |
| TTGTAGCACCTGATGAGTGG+TGG | 0.632872 | 4_2:+47118853 | Msa0602980:CDS |
| TCACACAGGTTAGTCATGAA+CGG | 0.640237 | 4_2:-47119567 | None:intergenic |
| CCATTACATCCTAGTCACAC+AGG | 0.643132 | 4_2:-47119581 | None:intergenic |
| GAGAGAAACTGGATTAGGGT+GGG | 0.643865 | 4_2:+47118812 | Msa0602980:CDS |
| GTCTCCAAGGGAGAACGTGT+TGG | 0.644338 | 4_2:+47118648 | Msa0602980:CDS |
| CACTTGGGCACCATCATGTG+GGG | 0.646121 | 4_2:+47119071 | Msa0602980:CDS |
| TGTTTGGAGCAAGTCTCCAA+GGG | 0.647436 | 4_2:+47118636 | Msa0602980:CDS |
| TGTAGCACCTGATGAGTGGT+GGG | 0.651018 | 4_2:+47118854 | Msa0602980:CDS |
| GATGGCTGAGCTTCACACCA+TGG | 0.663371 | 4_2:+47119401 | Msa0602980:CDS |
| GGCTAATGGAGAGTACACTT+GGG | 0.684848 | 4_2:+47119056 | Msa0602980:CDS |
| CTGTTGTAGCACCTGATGAG+TGG | 0.705267 | 4_2:+47118850 | Msa0602980:CDS |
| GAGATGTTTATTTCCCTACG+AGG | 0.736446 | 4_2:+47119492 | Msa0602980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCCTAAATTTTTCATAAAGA+GGG | - | chr4_2:47118984-47119003 | None:intergenic | 20.0% |
| !!! | TTCCTAAATTTTTCATAAAG+AGG | - | chr4_2:47118985-47119004 | None:intergenic | 20.0% |
| !! | TTATGAAAAATTTAGGAACA+AGG | + | chr4_2:47118987-47119006 | Msa0602980:CDS | 20.0% |
| !! | TATGAAAAATTTAGGAACAA+GGG | + | chr4_2:47118988-47119007 | Msa0602980:CDS | 20.0% |
| !!! | TCCTAAATTTTTCATAAAGA+GGG | - | chr4_2:47118984-47119003 | None:intergenic | 20.0% |
| !!! | TTCCTAAATTTTTCATAAAG+AGG | - | chr4_2:47118985-47119004 | None:intergenic | 20.0% |
| !! | TTATGAAAAATTTAGGAACA+AGG | + | chr4_2:47118987-47119006 | Msa0602980:CDS | 20.0% |
| !! | TATGAAAAATTTAGGAACAA+GGG | + | chr4_2:47118988-47119007 | Msa0602980:CDS | 20.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | + | chr4_2:47118534-47118553 | Msa0602980:CDS | 25.0% |
| ! | ACCCTCTTTATGAAAAATTT+AGG | + | chr4_2:47118980-47118999 | Msa0602980:CDS | 25.0% |
| ! | ATGAAAAATTTAGGAACAAG+GGG | + | chr4_2:47118989-47119008 | Msa0602980:CDS | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | + | chr4_2:47119192-47119211 | Msa0602980:CDS | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | + | chr4_2:47119193-47119212 | Msa0602980:CDS | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | + | chr4_2:47119219-47119238 | Msa0602980:CDS | 25.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | + | chr4_2:47118534-47118553 | Msa0602980:CDS | 25.0% |
| ! | ACCCTCTTTATGAAAAATTT+AGG | + | chr4_2:47118980-47118999 | Msa0602980:CDS | 25.0% |
| ! | ATGAAAAATTTAGGAACAAG+GGG | + | chr4_2:47118989-47119008 | Msa0602980:CDS | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | + | chr4_2:47119192-47119211 | Msa0602980:CDS | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | + | chr4_2:47119193-47119212 | Msa0602980:CDS | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | + | chr4_2:47119219-47119238 | Msa0602980:CDS | 25.0% |
| GAATACCAAGAAAAATGTTG+TGG | + | chr4_2:47118533-47118552 | Msa0602980:CDS | 30.0% | |
| GCAGAAAACAAAAGCTATTT+GGG | + | chr4_2:47118581-47118600 | Msa0602980:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | + | chr4_2:47118620-47118639 | Msa0602980:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | + | chr4_2:47118670-47118689 | Msa0602980:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | + | chr4_2:47118685-47118704 | Msa0602980:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | + | chr4_2:47118686-47118705 | Msa0602980:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+CGG | + | chr4_2:47118708-47118727 | Msa0602980:CDS | 30.0% | |
| GTCCGGTTAAATTATGAAAT+CGG | - | chr4_2:47118713-47118732 | None:intergenic | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | + | chr4_2:47118789-47118808 | Msa0602980:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | + | chr4_2:47118790-47118809 | Msa0602980:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | - | chr4_2:47118883-47118902 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | - | chr4_2:47118926-47118945 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | - | chr4_2:47119102-47119121 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | + | chr4_2:47119119-47119138 | Msa0602980:CDS | 30.0% |
| GAATACCAAGAAAAATGTTG+TGG | + | chr4_2:47118533-47118552 | Msa0602980:CDS | 30.0% | |
| GCAGAAAACAAAAGCTATTT+GGG | + | chr4_2:47118581-47118600 | Msa0602980:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | + | chr4_2:47118620-47118639 | Msa0602980:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | + | chr4_2:47118670-47118689 | Msa0602980:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | + | chr4_2:47118685-47118704 | Msa0602980:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | + | chr4_2:47118686-47118705 | Msa0602980:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+CGG | + | chr4_2:47118708-47118727 | Msa0602980:CDS | 30.0% | |
| GTCCGGTTAAATTATGAAAT+CGG | - | chr4_2:47118713-47118732 | None:intergenic | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | + | chr4_2:47118789-47118808 | Msa0602980:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | + | chr4_2:47118790-47118809 | Msa0602980:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | - | chr4_2:47118883-47118902 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | - | chr4_2:47118926-47118945 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | - | chr4_2:47119102-47119121 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | + | chr4_2:47119119-47119138 | Msa0602980:CDS | 30.0% |
| GGCAGAAAACAAAAGCTATT+TGG | + | chr4_2:47118580-47118599 | Msa0602980:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | + | chr4_2:47118669-47118688 | Msa0602980:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | + | chr4_2:47118742-47118761 | Msa0602980:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | + | chr4_2:47118801-47118820 | Msa0602980:CDS | 35.0% | |
| GATGTGAGTTATGAAAATGC+AGG | + | chr4_2:47118954-47118973 | Msa0602980:intron | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | - | chr4_2:47119025-47119044 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | + | chr4_2:47119026-47119045 | Msa0602980:CDS | 35.0% |
| AAAACTGATGGTCAAAAGAG+TGG | + | chr4_2:47119231-47119250 | Msa0602980:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | - | chr4_2:47119291-47119310 | None:intergenic | 35.0% |
| ! | ATCATTTGAGACTTCATCCA+TGG | - | chr4_2:47119421-47119440 | None:intergenic | 35.0% |
| GGCAGAAAACAAAAGCTATT+TGG | + | chr4_2:47118580-47118599 | Msa0602980:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | + | chr4_2:47118669-47118688 | Msa0602980:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | + | chr4_2:47118742-47118761 | Msa0602980:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | + | chr4_2:47118801-47118820 | Msa0602980:CDS | 35.0% | |
| GATGTGAGTTATGAAAATGC+AGG | + | chr4_2:47118954-47118973 | Msa0602980:intron | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | - | chr4_2:47119025-47119044 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | + | chr4_2:47119026-47119045 | Msa0602980:CDS | 35.0% |
| AAAACTGATGGTCAAAAGAG+TGG | + | chr4_2:47119231-47119250 | Msa0602980:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | - | chr4_2:47119291-47119310 | None:intergenic | 35.0% |
| ! | ATCATTTGAGACTTCATCCA+TGG | - | chr4_2:47119421-47119440 | None:intergenic | 35.0% |
| ! | GGAACCCACAACATTTTTCT+TGG | - | chr4_2:47118541-47118560 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | + | chr4_2:47118673-47118692 | Msa0602980:CDS | 40.0% |
| TAGGTATGACAGTCTGAGAA+AGG | + | chr4_2:47118761-47118780 | Msa0602980:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | + | chr4_2:47118766-47118785 | Msa0602980:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | + | chr4_2:47118807-47118826 | Msa0602980:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | + | chr4_2:47118808-47118827 | Msa0602980:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | - | chr4_2:47119037-47119056 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | + | chr4_2:47119035-47119054 | Msa0602980:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | + | chr4_2:47119042-47119061 | Msa0602980:CDS | 40.0% | |
| GTTGGAGCAACAACTGAATT+TGG | + | chr4_2:47119183-47119202 | Msa0602980:CDS | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | + | chr4_2:47119383-47119402 | Msa0602980:CDS | 40.0% | |
| TGTTGATGTTTAAGCCTGCA+AGG | + | chr4_2:47119469-47119488 | Msa0602980:CDS | 40.0% | |
| GTTGATGTTTAAGCCTGCAA+GGG | + | chr4_2:47119470-47119489 | Msa0602980:CDS | 40.0% | |
| GAAATAAACATCTCCCTTGC+AGG | - | chr4_2:47119486-47119505 | None:intergenic | 40.0% | |
| GAGATGTTTATTTCCCTACG+AGG | + | chr4_2:47119492-47119511 | Msa0602980:CDS | 40.0% | |
| ! | TCACACAGGTTAGTCATGAA+CGG | - | chr4_2:47119570-47119589 | None:intergenic | 40.0% |
| ! | GGAACCCACAACATTTTTCT+TGG | - | chr4_2:47118541-47118560 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | + | chr4_2:47118673-47118692 | Msa0602980:CDS | 40.0% |
| TAGGTATGACAGTCTGAGAA+AGG | + | chr4_2:47118761-47118780 | Msa0602980:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | + | chr4_2:47118766-47118785 | Msa0602980:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | + | chr4_2:47118807-47118826 | Msa0602980:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | + | chr4_2:47118808-47118827 | Msa0602980:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | - | chr4_2:47119037-47119056 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | + | chr4_2:47119035-47119054 | Msa0602980:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | + | chr4_2:47119042-47119061 | Msa0602980:CDS | 40.0% | |
| GTTGGAGCAACAACTGAATT+TGG | + | chr4_2:47119183-47119202 | Msa0602980:CDS | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | + | chr4_2:47119383-47119402 | Msa0602980:CDS | 40.0% | |
| TGTTGATGTTTAAGCCTGCA+AGG | + | chr4_2:47119469-47119488 | Msa0602980:CDS | 40.0% | |
| GTTGATGTTTAAGCCTGCAA+GGG | + | chr4_2:47119470-47119489 | Msa0602980:CDS | 40.0% | |
| GAAATAAACATCTCCCTTGC+AGG | - | chr4_2:47119486-47119505 | None:intergenic | 40.0% | |
| GAGATGTTTATTTCCCTACG+AGG | + | chr4_2:47119492-47119511 | Msa0602980:CDS | 40.0% | |
| ! | TCACACAGGTTAGTCATGAA+CGG | - | chr4_2:47119570-47119589 | None:intergenic | 40.0% |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | + | chr4_2:47118635-47118654 | Msa0602980:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | + | chr4_2:47118636-47118655 | Msa0602980:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | + | chr4_2:47118725-47118744 | Msa0602980:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | - | chr4_2:47118730-47118749 | None:intergenic | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | + | chr4_2:47118775-47118794 | Msa0602980:CDS | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | + | chr4_2:47118812-47118831 | Msa0602980:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | - | chr4_2:47118840-47118859 | None:intergenic | 45.0% |
| GTGGTTAACTCATTGGCGAA+TGG | - | chr4_2:47119018-47119037 | None:intergenic | 45.0% | |
| ! | TGGCTAATGGAGAGTACACT+TGG | + | chr4_2:47119055-47119074 | Msa0602980:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | + | chr4_2:47119056-47119075 | Msa0602980:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | + | chr4_2:47119125-47119144 | Msa0602980:CDS | 45.0% |
| GTCAAAAGAGTGGTGAGAAG+AGG | + | chr4_2:47119241-47119260 | Msa0602980:CDS | 45.0% | |
| TCGTTCTCGCAATGATGTTG+CGG | + | chr4_2:47119356-47119375 | Msa0602980:CDS | 45.0% | |
| GTTGCGGGTAATGCATCTAT+TGG | + | chr4_2:47119372-47119391 | Msa0602980:CDS | 45.0% | |
| TATTTCCCTACGAGGTTCAG+AGG | + | chr4_2:47119500-47119519 | Msa0602980:CDS | 45.0% | |
| CAGAGGAGAAGAGGTTGAAT+TGG | + | chr4_2:47119517-47119536 | Msa0602980:CDS | 45.0% | |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | + | chr4_2:47118635-47118654 | Msa0602980:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | + | chr4_2:47118636-47118655 | Msa0602980:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | + | chr4_2:47118725-47118744 | Msa0602980:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | - | chr4_2:47118730-47118749 | None:intergenic | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | + | chr4_2:47118775-47118794 | Msa0602980:CDS | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | + | chr4_2:47118812-47118831 | Msa0602980:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | - | chr4_2:47118840-47118859 | None:intergenic | 45.0% |
| GTGGTTAACTCATTGGCGAA+TGG | - | chr4_2:47119018-47119037 | None:intergenic | 45.0% | |
| ! | TGGCTAATGGAGAGTACACT+TGG | + | chr4_2:47119055-47119074 | Msa0602980:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | + | chr4_2:47119056-47119075 | Msa0602980:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | + | chr4_2:47119125-47119144 | Msa0602980:CDS | 45.0% |
| GTCAAAAGAGTGGTGAGAAG+AGG | + | chr4_2:47119241-47119260 | Msa0602980:CDS | 45.0% | |
| TCGTTCTCGCAATGATGTTG+CGG | + | chr4_2:47119356-47119375 | Msa0602980:CDS | 45.0% | |
| GTTGCGGGTAATGCATCTAT+TGG | + | chr4_2:47119372-47119391 | Msa0602980:CDS | 45.0% | |
| TATTTCCCTACGAGGTTCAG+AGG | + | chr4_2:47119500-47119519 | Msa0602980:CDS | 45.0% | |
| CAGAGGAGAAGAGGTTGAAT+TGG | + | chr4_2:47119517-47119536 | Msa0602980:CDS | 45.0% | |
| GTTCCTCCTCACCTAGTGAT+GGG | + | chr4_2:47118556-47118575 | Msa0602980:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | + | chr4_2:47118557-47118576 | Msa0602980:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | + | chr4_2:47118811-47118830 | Msa0602980:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | + | chr4_2:47118850-47118869 | Msa0602980:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | + | chr4_2:47118853-47118872 | Msa0602980:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | + | chr4_2:47118854-47118873 | Msa0602980:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | + | chr4_2:47119069-47119088 | Msa0602980:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | + | chr4_2:47119070-47119089 | Msa0602980:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | - | chr4_2:47119084-47119103 | None:intergenic | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | + | chr4_2:47119165-47119184 | Msa0602980:CDS | 50.0% | |
| CGTTCTCGCAATGATGTTGC+GGG | + | chr4_2:47119357-47119376 | Msa0602980:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | - | chr4_2:47119508-47119527 | None:intergenic | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | - | chr4_2:47119509-47119528 | None:intergenic | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | + | chr4_2:47119508-47119527 | Msa0602980:CDS | 50.0% | |
| ! | GGTTAGTCATGAACGGCAGT+GGG | - | chr4_2:47119563-47119582 | None:intergenic | 50.0% |
| ! | AGGTTAGTCATGAACGGCAG+TGG | - | chr4_2:47119564-47119583 | None:intergenic | 50.0% |
| GTTCCTCCTCACCTAGTGAT+GGG | + | chr4_2:47118556-47118575 | Msa0602980:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | + | chr4_2:47118557-47118576 | Msa0602980:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | + | chr4_2:47118811-47118830 | Msa0602980:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | + | chr4_2:47118850-47118869 | Msa0602980:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | + | chr4_2:47118853-47118872 | Msa0602980:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | + | chr4_2:47118854-47118873 | Msa0602980:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | + | chr4_2:47119069-47119088 | Msa0602980:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | + | chr4_2:47119070-47119089 | Msa0602980:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | - | chr4_2:47119084-47119103 | None:intergenic | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | + | chr4_2:47119165-47119184 | Msa0602980:CDS | 50.0% | |
| CGTTCTCGCAATGATGTTGC+GGG | + | chr4_2:47119357-47119376 | Msa0602980:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | - | chr4_2:47119508-47119527 | None:intergenic | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | - | chr4_2:47119509-47119528 | None:intergenic | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | + | chr4_2:47119508-47119527 | Msa0602980:CDS | 50.0% | |
| ! | GGTTAGTCATGAACGGCAGT+GGG | - | chr4_2:47119563-47119582 | None:intergenic | 50.0% |
| ! | AGGTTAGTCATGAACGGCAG+TGG | - | chr4_2:47119564-47119583 | None:intergenic | 50.0% |
| GGTTCCTCCTCACCTAGTGA+TGG | + | chr4_2:47118555-47118574 | Msa0602980:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | + | chr4_2:47118558-47118577 | Msa0602980:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | - | chr4_2:47118570-47118589 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | + | chr4_2:47118648-47118667 | Msa0602980:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | - | chr4_2:47118655-47118674 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | - | chr4_2:47118864-47118883 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | + | chr4_2:47118869-47118888 | Msa0602980:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | + | chr4_2:47119071-47119090 | Msa0602980:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | + | chr4_2:47119135-47119154 | Msa0602980:CDS | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+TGG | + | chr4_2:47119141-47119160 | Msa0602980:CDS | 55.0% | |
| AGAAGGATCTGGCGATAGCG+AGG | + | chr4_2:47119152-47119171 | Msa0602980:CDS | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | + | chr4_2:47119401-47119420 | Msa0602980:CDS | 55.0% | |
| GGTTCCTCCTCACCTAGTGA+TGG | + | chr4_2:47118555-47118574 | Msa0602980:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | + | chr4_2:47118558-47118577 | Msa0602980:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | - | chr4_2:47118570-47118589 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | + | chr4_2:47118648-47118667 | Msa0602980:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | - | chr4_2:47118655-47118674 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | - | chr4_2:47118864-47118883 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | + | chr4_2:47118869-47118888 | Msa0602980:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | + | chr4_2:47119071-47119090 | Msa0602980:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | + | chr4_2:47119135-47119154 | Msa0602980:CDS | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+TGG | + | chr4_2:47119141-47119160 | Msa0602980:CDS | 55.0% | |
| AGAAGGATCTGGCGATAGCG+AGG | + | chr4_2:47119152-47119171 | Msa0602980:CDS | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | + | chr4_2:47119401-47119420 | Msa0602980:CDS | 55.0% | |
| ! | CCTCCTCACCTAGTGATGGG+GGG | + | chr4_2:47118559-47118578 | Msa0602980:CDS | 60.0% |
| ! | CCTCCTCACCTAGTGATGGG+GGG | + | chr4_2:47118559-47118578 | Msa0602980:CDS | 60.0% |
| CCCCCCATCACTAGGTGAGG+AGG | - | chr4_2:47118562-47118581 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | - | chr4_2:47118565-47118584 | None:intergenic | 65.0% | |
| CCCCCCATCACTAGGTGAGG+AGG | - | chr4_2:47118562-47118581 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | - | chr4_2:47118565-47118584 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 47118528 | 47119593 | 47118528 | ID=Msa0602980;Name=Msa0602980 |
| chr4_2 | mRNA | 47118528 | 47119593 | 47118528 | ID=Msa0602980-mRNA-1;Parent=Msa0602980;Name=Msa0602980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|326 |
| chr4_2 | exon | 47118528 | 47118890 | 47118528 | ID=Msa0602980-mRNA-1:exon:10754;Parent=Msa0602980-mRNA-1 |
| chr4_2 | exon | 47118976 | 47119593 | 47118976 | ID=Msa0602980-mRNA-1:exon:10755;Parent=Msa0602980-mRNA-1 |
| chr4_2 | CDS | 47118528 | 47118890 | 47118528 | ID=Msa0602980-mRNA-1:cds;Parent=Msa0602980-mRNA-1 |
| chr4_2 | CDS | 47118976 | 47119593 | 47118976 | ID=Msa0602980-mRNA-1:cds;Parent=Msa0602980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
