Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767740 | PNX71799.1 | 62.602 | 246 | 70 | 2 | 1 | 246 | 288 | 511 | 1.09e-95 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767740 | sp|Q9ZVC9|FRS3_ARATH | 35.772 | 123 | 75 | 2 | 2 | 124 | 523 | 641 | 2.09e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767740 | A0A2K3KZX1 | 62.602 | 246 | 70 | 2 | 1 | 246 | 288 | 511 | 5.21e-96 | 303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0767740 | 0.805485 | 1.304717e-49 | -8.615850e-47 |
| Msa0112810 | Msa0767740 | 0.850309 | 1.845419e-60 | -8.615850e-47 |
| Msa0681270 | Msa0767740 | 0.800600 | 1.335839e-48 | -8.615850e-47 |
| Msa0688270 | Msa0767740 | 0.812538 | 4.030539e-51 | -8.615850e-47 |
| Msa0731940 | Msa0767740 | 0.808931 | 2.429430e-50 | -8.615850e-47 |
| Msa0767740 | Msa0822870 | 0.819404 | 1.182177e-52 | -8.615850e-47 |
| Msa0767740 | Msa0844490 | 0.802896 | 4.512546e-49 | -8.615850e-47 |
| Msa0767740 | Msa0857680 | 0.858219 | 9.574953e-63 | -8.615850e-47 |
| Msa0767740 | Msa0880140 | 0.810046 | 1.400543e-50 | -8.615850e-47 |
| Msa0767740 | Msa0938220 | 0.816461 | 5.465843e-52 | -8.615850e-47 |
| Msa0767740 | Msa1014540 | 0.829784 | 4.241463e-55 | -8.615850e-47 |
| Msa0767740 | Msa1075540 | 0.803515 | 3.359769e-49 | -8.615850e-47 |
| Msa0767740 | Msa1113170 | 0.806421 | 8.292419e-50 | -8.615850e-47 |
| Msa0767740 | Msa1277660 | 0.822257 | 2.609116e-53 | -8.615850e-47 |
| Msa0767740 | Msa1284680 | 0.808042 | 3.761413e-50 | -8.615850e-47 |
| Msa0157290 | Msa0767740 | 0.806218 | 9.154610e-50 | -8.615850e-47 |
| Msa0395790 | Msa0767740 | 0.807478 | 4.956715e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767740 | MtrunA17_Chr1g0203721 | 43.548 | 124 | 70 | 0 | 2 | 125 | 567 | 690 | 1.07e-26 | 109 |
| Msa0767740 | MtrunA17_Chr3g0082121 | 41.176 | 119 | 70 | 0 | 6 | 124 | 538 | 656 | 2.90e-21 | 93.6 |
| Msa0767740 | MtrunA17_Chr6g0458391 | 56.897 | 58 | 25 | 0 | 1 | 58 | 708 | 765 | 6.03e-18 | 83.6 |
| Msa0767740 | MtrunA17_Chr2g0324011 | 47.222 | 72 | 38 | 0 | 5 | 76 | 515 | 586 | 2.21e-15 | 75.9 |
| Msa0767740 | MtrunA17_Chr5g0448511 | 47.541 | 61 | 32 | 0 | 4 | 64 | 343 | 403 | 2.73e-15 | 75.5 |
| Msa0767740 | MtrunA17_Chr8g0363841 | 30.769 | 156 | 92 | 5 | 2 | 148 | 521 | 669 | 1.26e-14 | 73.9 |
| Msa0767740 | MtrunA17_Chr5g0440451 | 31.061 | 132 | 87 | 2 | 2 | 132 | 548 | 676 | 1.29e-14 | 73.9 |
| Msa0767740 | MtrunA17_Chr5g0441581 | 38.318 | 107 | 62 | 2 | 5 | 110 | 530 | 633 | 1.57e-14 | 73.6 |
| Msa0767740 | MtrunA17_Chr2g0287061 | 45.312 | 64 | 35 | 0 | 1 | 64 | 644 | 707 | 5.52e-14 | 72.0 |
| Msa0767740 | MtrunA17_Chr2g0329031 | 38.679 | 106 | 59 | 3 | 2 | 107 | 505 | 604 | 3.97e-13 | 69.3 |
| Msa0767740 | MtrunA17_Chr5g0448761 | 45.161 | 62 | 34 | 0 | 2 | 63 | 569 | 630 | 1.56e-12 | 67.4 |
| Msa0767740 | MtrunA17_Chr3g0118611 | 35.955 | 89 | 55 | 1 | 2 | 90 | 445 | 531 | 7.71e-12 | 65.5 |
| Msa0767740 | MtrunA17_Chr3g0080351 | 33.981 | 103 | 63 | 1 | 2 | 104 | 567 | 664 | 1.14e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767740 | AT2G27110.2 | 35.772 | 123 | 75 | 2 | 2 | 124 | 523 | 641 | 2.13e-16 | 79.7 |
| Msa0767740 | AT2G27110.1 | 35.772 | 123 | 75 | 2 | 2 | 124 | 523 | 641 | 2.13e-16 | 79.7 |
| Msa0767740 | AT2G27110.3 | 35.772 | 123 | 75 | 2 | 2 | 124 | 378 | 496 | 2.34e-16 | 79.3 |
| Msa0767740 | AT3G06250.2 | 41.558 | 77 | 45 | 0 | 3 | 79 | 649 | 725 | 2.65e-15 | 76.3 |
| Msa0767740 | AT3G06250.1 | 41.558 | 77 | 45 | 0 | 3 | 79 | 649 | 725 | 2.65e-15 | 76.3 |
| Msa0767740 | AT3G06250.3 | 41.558 | 77 | 45 | 0 | 3 | 79 | 649 | 725 | 2.65e-15 | 76.3 |
| Msa0767740 | AT4G38180.1 | 45.312 | 64 | 35 | 0 | 2 | 65 | 578 | 641 | 9.47e-15 | 74.7 |
| Msa0767740 | AT5G18960.2 | 41.558 | 77 | 45 | 0 | 3 | 79 | 673 | 749 | 4.81e-14 | 72.4 |
| Msa0767740 | AT5G18960.1 | 41.558 | 77 | 45 | 0 | 3 | 79 | 673 | 749 | 4.81e-14 | 72.4 |
| Msa0767740 | AT4G15090.1 | 37.383 | 107 | 62 | 2 | 6 | 112 | 557 | 658 | 2.13e-13 | 70.5 |
| Msa0767740 | AT4G15090.5 | 37.383 | 107 | 62 | 2 | 6 | 112 | 557 | 658 | 2.13e-13 | 70.5 |
| Msa0767740 | AT4G15090.3 | 37.383 | 107 | 62 | 2 | 6 | 112 | 557 | 658 | 2.13e-13 | 70.5 |
| Msa0767740 | AT4G15090.2 | 37.383 | 107 | 62 | 2 | 6 | 112 | 557 | 658 | 2.13e-13 | 70.5 |
| Msa0767740 | AT4G15090.4 | 37.383 | 107 | 62 | 2 | 6 | 112 | 557 | 658 | 2.13e-13 | 70.5 |
| Msa0767740 | AT4G19990.5 | 42.353 | 85 | 45 | 1 | 2 | 86 | 503 | 583 | 1.67e-12 | 67.8 |
| Msa0767740 | AT4G19990.3 | 42.353 | 85 | 45 | 1 | 2 | 86 | 503 | 583 | 1.67e-12 | 67.8 |
| Msa0767740 | AT4G19990.4 | 42.353 | 85 | 45 | 1 | 2 | 86 | 503 | 583 | 1.67e-12 | 67.8 |
| Msa0767740 | AT4G19990.7 | 42.353 | 85 | 45 | 1 | 2 | 86 | 517 | 597 | 1.69e-12 | 67.8 |
| Msa0767740 | AT4G19990.6 | 42.353 | 85 | 45 | 1 | 2 | 86 | 503 | 583 | 1.72e-12 | 67.8 |
| Msa0767740 | AT4G19990.2 | 42.353 | 85 | 45 | 1 | 2 | 86 | 503 | 583 | 1.72e-12 | 67.8 |
| Msa0767740 | AT4G19990.1 | 42.353 | 85 | 45 | 1 | 2 | 86 | 446 | 526 | 1.96e-12 | 67.8 |
| Msa0767740 | AT4G38170.1 | 40.351 | 57 | 34 | 0 | 2 | 58 | 343 | 399 | 1.96e-11 | 64.7 |
| Msa0767740 | AT3G22170.2 | 36.082 | 97 | 56 | 1 | 6 | 102 | 566 | 656 | 7.15e-11 | 63.2 |
| Msa0767740 | AT3G22170.1 | 36.082 | 97 | 56 | 1 | 6 | 102 | 566 | 656 | 7.15e-11 | 63.2 |
Find 124 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTTGCATCCATTTATTT+TGG | 0.162980 | 5_2:-31379206 | None:intergenic |
| GAGTTGCAAAGTTGCATTTA+TGG | 0.171824 | 5_2:+31379120 | Msa0767740:five_prime_UTR |
| ATCTAATAACAAACATCTTT+TGG | 0.177582 | 5_2:+31378719 | Msa0767740:five_prime_UTR |
| CCTTGCTCTACCTGTATAAT+TGG | 0.192215 | 5_2:-31380237 | None:intergenic |
| CGATTTAAGACAACTAATTT+AGG | 0.200300 | 5_2:-31379838 | None:intergenic |
| CAATTAAGTGAGAGCTTTAA+TGG | 0.201468 | 5_2:+31379300 | Msa0767740:five_prime_UTR |
| CATCTCTTAAGGATGTATTT+TGG | 0.224916 | 5_2:-31379754 | None:intergenic |
| GCAAGATTTCTTTAACAAAA+AGG | 0.240784 | 5_2:+31379221 | Msa0767740:five_prime_UTR |
| AGAGCTTTAATGGCCGTTTA+AGG | 0.266195 | 5_2:+31379310 | Msa0767740:five_prime_UTR |
| TAAATGATTGCTAATATCTT+TGG | 0.285585 | 5_2:-31378578 | None:intergenic |
| AAAATCATGTAATCTTGTTT+TGG | 0.288784 | 5_2:+31379536 | Msa0767740:five_prime_UTR |
| TACGACATGGTTACAAATAT+AGG | 0.291941 | 5_2:+31377853 | Msa0767740:five_prime_UTR |
| CTTCAATGCATCTGAAGTTA+TGG | 0.292580 | 5_2:+31380080 | Msa0767740:CDS |
| GAATATGATGTGTGCTTGTT+TGG | 0.292966 | 5_2:+31379592 | Msa0767740:five_prime_UTR |
| GAAATTGCCTTTGCCATTGC+AGG | 0.294524 | 5_2:-31378991 | None:intergenic |
| CATCCATCTTGTGAGGTTCT+TGG | 0.298227 | 5_2:+31377892 | Msa0767740:five_prime_UTR |
| ACGACATGGTTACAAATATA+GGG | 0.303330 | 5_2:+31377854 | Msa0767740:five_prime_UTR |
| AGTTGTCTTAAATCGCTCTA+AGG | 0.309478 | 5_2:+31379846 | Msa0767740:CDS |
| TTGAAAGCATCTTGAGTAAA+AGG | 0.309833 | 5_2:+31379968 | Msa0767740:CDS |
| CGACCATTTGCTCCGTTTGT+TGG | 0.314036 | 5_2:+31378826 | Msa0767740:five_prime_UTR |
| AATATGATGTGTGCTTGTTT+GGG | 0.314379 | 5_2:+31379593 | Msa0767740:five_prime_UTR |
| GGGTTGCAAGTTCATGGTTA+TGG | 0.320894 | 5_2:-31378402 | None:intergenic |
| TGTTCAGCGCATTTGGTCAT+TGG | 0.324780 | 5_2:+31378334 | Msa0767740:five_prime_UTR |
| TCAATGTGACTTGTTGAAAA+TGG | 0.330148 | 5_2:-31380526 | None:intergenic |
| GTTGTGGATTATGCTTATTT+TGG | 0.330790 | 5_2:+31378757 | Msa0767740:five_prime_UTR |
| ATCCATCTTGTGAGGTTCTT+GGG | 0.331730 | 5_2:+31377893 | Msa0767740:five_prime_UTR |
| ATATTCTTCGCCAAAATAAA+TGG | 0.331784 | 5_2:+31379196 | Msa0767740:five_prime_UTR |
| AACTGGTTGTTCAGCGCATT+TGG | 0.336400 | 5_2:+31378327 | Msa0767740:five_prime_UTR |
| ATTGATTGGAAGAATACATT+TGG | 0.344115 | 5_2:+31380544 | Msa0767740:CDS |
| GCTAGATGATATGCGATATA+AGG | 0.344976 | 5_2:+31379389 | Msa0767740:five_prime_UTR |
| TTTCAACAAGTCACATTGAT+TGG | 0.348376 | 5_2:+31380530 | Msa0767740:CDS |
| TATTCAATGATGGCATCTTC+TGG | 0.352708 | 5_2:-31379437 | None:intergenic |
| CATTCTTAGTCCATCTCTTA+AGG | 0.363154 | 5_2:-31379765 | None:intergenic |
| TCAAATTCCATACCAACATT+TGG | 0.374980 | 5_2:-31378115 | None:intergenic |
| TTCAATGCATCTGAAGTTAT+GGG | 0.383526 | 5_2:+31380081 | Msa0767740:CDS |
| AATATGTACGCAGGCTTTGT+TGG | 0.387200 | 5_2:+31378166 | Msa0767740:five_prime_UTR |
| TCTACCTGTATAATTGGAAT+TGG | 0.389412 | 5_2:-31380231 | None:intergenic |
| CTATTCGAGTACTTAATCAT+TGG | 0.395437 | 5_2:+31379713 | Msa0767740:CDS |
| TTTCTCTCTAGACAACTCTT+AGG | 0.396099 | 5_2:-31380144 | None:intergenic |
| ACTTTGATCTTCAGAGTTGA+AGG | 0.396762 | 5_2:-31379638 | None:intergenic |
| TATTGTGTTGAAAGGTAGAT+TGG | 0.421876 | 5_2:-31377832 | None:intergenic |
| CGGCAACTTATGCCTACTCC+TGG | 0.430290 | 5_2:-31378425 | None:intergenic |
| GGATGTGTTCTTGACAATAA+AGG | 0.432868 | 5_2:+31379796 | Msa0767740:CDS |
| TTCTAAAAGAATGAAGGAAA+TGG | 0.436948 | 5_2:+31378603 | Msa0767740:five_prime_UTR |
| TTGATTGGAAGAATACATTT+GGG | 0.441031 | 5_2:+31380545 | Msa0767740:CDS |
| ACCATGATCTGCACTCTGTA+TGG | 0.447129 | 5_2:-31379995 | None:intergenic |
| TTTAAATTCTAAAAGAATGA+AGG | 0.449329 | 5_2:+31378597 | Msa0767740:five_prime_UTR |
| TCAAGCTACTGAAGTTGAAA+TGG | 0.456331 | 5_2:+31378471 | Msa0767740:five_prime_UTR |
| ATTGTGTTGAAAGGTAGATT+GGG | 0.456337 | 5_2:-31377831 | None:intergenic |
| ATACTGAAGATCATGCATAT+AGG | 0.460388 | 5_2:+31378137 | Msa0767740:five_prime_UTR |
| CATTTATGGTTTCGAGTATG+AGG | 0.463305 | 5_2:+31379134 | Msa0767740:five_prime_UTR |
| CATGCCAATTCCAATTATAC+AGG | 0.465016 | 5_2:+31380227 | Msa0767740:CDS |
| CATCGAGAAAGTGTGTTATT+CGG | 0.468321 | 5_2:+31378859 | Msa0767740:five_prime_UTR |
| GTTGAAATGGCGAACCGGTC+CGG | 0.468344 | 5_2:+31378484 | Msa0767740:five_prime_UTR |
| GGTTGATGCTAAAATGGTTG+TGG | 0.476397 | 5_2:+31378741 | Msa0767740:five_prime_UTR |
| AATCCAACAAACGGAGCAAA+TGG | 0.481640 | 5_2:-31378829 | None:intergenic |
| GGCAACTTATGCCTACTCCT+GGG | 0.485619 | 5_2:-31378424 | None:intergenic |
| GCTTCATGTAAAGCCTTAAA+CGG | 0.485722 | 5_2:-31379323 | None:intergenic |
| TGTCAAGATACACTAGCAAT+TGG | 0.487500 | 5_2:+31380309 | Msa0767740:CDS |
| CCTGCCACCTCAGATTCTAA+TGG | 0.489024 | 5_2:+31377952 | Msa0767740:five_prime_UTR |
| AATTAGTTTCTGACGTATGC+CGG | 0.490277 | 5_2:-31378503 | None:intergenic |
| CTGAAGTTGAAATGGCGAAC+CGG | 0.490381 | 5_2:+31378479 | Msa0767740:five_prime_UTR |
| ATTCTTATTAGTGCGATAAG+TGG | 0.490993 | 5_2:-31378800 | None:intergenic |
| GTTTCTGACGTATGCCGGAC+CGG | 0.493182 | 5_2:-31378498 | None:intergenic |
| TGCGGTAGCAATATCATGTA+AGG | 0.495096 | 5_2:+31379882 | Msa0767740:CDS |
| GATGGTGTATCCAGAGGAAA+AGG | 0.496843 | 5_2:+31380117 | Msa0767740:CDS |
| CATTGAAAATGATGTAACCT+TGG | 0.502984 | 5_2:+31378081 | Msa0767740:five_prime_UTR |
| CTCGAATAGCATGGCAGCAA+AGG | 0.509751 | 5_2:-31379699 | None:intergenic |
| TGATCTGTTAAAATTGTCAT+CGG | 0.512471 | 5_2:-31378964 | None:intergenic |
| TATAGTTCCAAATGTTGGTA+TGG | 0.518391 | 5_2:+31378108 | Msa0767740:five_prime_UTR |
| GCAACTTATGCCTACTCCTG+GGG | 0.521976 | 5_2:-31378423 | None:intergenic |
| GACGATATAGTTCCAAATGT+TGG | 0.524084 | 5_2:+31378103 | Msa0767740:five_prime_UTR |
| ACTCGCAAAGATATCAGAAC+TGG | 0.524113 | 5_2:+31378310 | Msa0767740:five_prime_UTR |
| CAAAATACATCCTTAAGAGA+TGG | 0.525845 | 5_2:+31379755 | Msa0767740:CDS |
| AGACAGCTGAATCATTTAAG+TGG | 0.526677 | 5_2:+31378902 | Msa0767740:five_prime_UTR |
| CAAGAACCTCACAAGATGGA+TGG | 0.528873 | 5_2:-31377891 | None:intergenic |
| AAGAGAATAAAAGATGAAGA+AGG | 0.531444 | 5_2:+31378280 | Msa0767740:five_prime_UTR |
| TGATGATTAAATCCAACAAA+CGG | 0.536884 | 5_2:-31378838 | None:intergenic |
| ATGATGTTCATATTCAATGA+TGG | 0.538522 | 5_2:-31379447 | None:intergenic |
| CTCCCAAGAACCTCACAAGA+TGG | 0.539182 | 5_2:-31377895 | None:intergenic |
| CCATTAGAATCTGAGGTGGC+AGG | 0.543712 | 5_2:-31377952 | None:intergenic |
| TGTGCTTGTTTGGGGCTATG+AGG | 0.552398 | 5_2:+31379602 | Msa0767740:exon |
| TCAATTACCATTAGAATCTG+AGG | 0.554221 | 5_2:-31377959 | None:intergenic |
| TTGTGTTGAAAGGTAGATTG+GGG | 0.557908 | 5_2:-31377830 | None:intergenic |
| TAAAAGAATGAAGGAAATGG+AGG | 0.559231 | 5_2:+31378606 | Msa0767740:five_prime_UTR |
| TTCATCAGTCGACAAGTTGG+AGG | 0.563681 | 5_2:+31378532 | Msa0767740:five_prime_UTR |
| TTTCTTATGCAAATAAACAA+TGG | 0.564955 | 5_2:-31380633 | None:intergenic |
| AGAATCCAATGGAAAATATG+TGG | 0.565466 | 5_2:+31378360 | Msa0767740:five_prime_UTR |
| GAAGGAAATGGAGGAAGGTG+AGG | 0.568120 | 5_2:+31378615 | Msa0767740:five_prime_UTR |
| AAACAAAAGTAAATTAGATG+AGG | 0.568540 | 5_2:+31378213 | Msa0767740:five_prime_UTR |
| TCCATACAGAGTGCAGATCA+TGG | 0.570905 | 5_2:+31379994 | Msa0767740:CDS |
| AATTCTAACACATTAAAGGT+AGG | 0.573003 | 5_2:-31379345 | None:intergenic |
| CCATGTCGTATTGTGTTGAA+AGG | 0.573143 | 5_2:-31377840 | None:intergenic |
| GAGTTCATCAGTCGACAAGT+TGG | 0.585840 | 5_2:+31378529 | Msa0767740:five_prime_UTR |
| ATTTGGAACTATATCGTCCA+AGG | 0.586186 | 5_2:-31378098 | None:intergenic |
| AATGGCAAAGGCAATTTCAG+AGG | 0.588293 | 5_2:+31378996 | Msa0767740:five_prime_UTR |
| AATTGGTATTAATGCAACAC+AGG | 0.588865 | 5_2:+31380326 | Msa0767740:CDS |
| TCAAGATCCTGCAATGGCAA+AGG | 0.589517 | 5_2:+31378984 | Msa0767740:five_prime_UTR |
| AGAATGAAGGAAATGGAGGA+AGG | 0.591377 | 5_2:+31378610 | Msa0767740:five_prime_UTR |
| AAGAACCTCACAAGATGGAT+GGG | 0.595753 | 5_2:-31377890 | None:intergenic |
| GTCATTGGTCGAGAATCCAA+TGG | 0.597725 | 5_2:+31378349 | Msa0767740:five_prime_UTR |
| TCCTACCCATCCATCTTGTG+AGG | 0.599686 | 5_2:+31377885 | Msa0767740:five_prime_UTR |
| TAATTGTGTTGTTGTAGCAC+CGG | 0.601043 | 5_2:-31379283 | None:intergenic |
| AACAGATCAAGATCCTGCAA+TGG | 0.602312 | 5_2:+31378978 | Msa0767740:five_prime_UTR |
| CCTTTCAACACAATACGACA+TGG | 0.604312 | 5_2:+31377840 | Msa0767740:five_prime_UTR |
| CGACATGGTTACAAATATAG+GGG | 0.608427 | 5_2:+31377855 | Msa0767740:five_prime_UTR |
| GTTGGAGGGAGAGAAAATGT+TGG | 0.613113 | 5_2:+31378547 | Msa0767740:five_prime_UTR |
| ACCTCACAAGATGGATGGGT+AGG | 0.620207 | 5_2:-31377886 | None:intergenic |
| ATATGATGTGTGCTTGTTTG+GGG | 0.629556 | 5_2:+31379594 | Msa0767740:five_prime_UTR |
| TGGACTAAGAATGCTCGAAG+TGG | 0.632229 | 5_2:+31379775 | Msa0767740:CDS |
| CCAATTATACAGGTAGAGCA+AGG | 0.633531 | 5_2:+31380237 | Msa0767740:CDS |
| TTCAGACATAATGAATGCAG+AGG | 0.634922 | 5_2:+31380495 | Msa0767740:CDS |
| ATAATTGGAATTGGCATGGT+GGG | 0.635857 | 5_2:-31380222 | None:intergenic |
| TCATCAGTCGACAAGTTGGA+GGG | 0.635913 | 5_2:+31378533 | Msa0767740:five_prime_UTR |
| TTATTGCTAGAAGAAAATAG+TGG | 0.641002 | 5_2:-31380667 | None:intergenic |
| CTGTATAATTGGAATTGGCA+TGG | 0.648417 | 5_2:-31380226 | None:intergenic |
| TCAATGCATCTGAAGTTATG+GGG | 0.650769 | 5_2:+31380082 | Msa0767740:CDS |
| CAACTTATGCCTACTCCTGG+GGG | 0.656119 | 5_2:-31378422 | None:intergenic |
| GATTAAGTACTCGAATAGCA+TGG | 0.658504 | 5_2:-31379708 | None:intergenic |
| AGATGATATGCGATATAAGG+AGG | 0.661490 | 5_2:+31379392 | Msa0767740:five_prime_UTR |
| AAGAAGGATGGTGTATCCAG+AGG | 0.663396 | 5_2:+31380111 | Msa0767740:CDS |
| ATTACCATTAGAATCTGAGG+TGG | 0.687081 | 5_2:-31377956 | None:intergenic |
| TATAATTGGAATTGGCATGG+TGG | 0.708131 | 5_2:-31380223 | None:intergenic |
| TAAGGATTTGTGTCGCACTG+CGG | 0.718952 | 5_2:+31379864 | Msa0767740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTCTTGTTTTAAAGA+AGG | + | chr5_2:31378253-31378272 | Msa0767740:five_prime_UTR | 15.0% |
| !!! | TTTAAATTCTAAAAGAATGA+AGG | + | chr5_2:31378597-31378616 | Msa0767740:five_prime_UTR | 15.0% |
| !!! | AATAAAAATTGATTTCAACA+TGG | - | chr5_2:31380425-31380444 | None:intergenic | 15.0% |
| !! | CTATATTAAAACCAATTCAA+AGG | - | chr5_2:31378031-31378050 | None:intergenic | 20.0% |
| !! | AAACAAAAGTAAATTAGATG+AGG | + | chr5_2:31378213-31378232 | Msa0767740:five_prime_UTR | 20.0% |
| !! | TAAATGATTGCTAATATCTT+TGG | - | chr5_2:31378581-31378600 | None:intergenic | 20.0% |
| !!! | ATCTAATAACAAACATCTTT+TGG | + | chr5_2:31378719-31378738 | Msa0767740:five_prime_UTR | 20.0% |
| !!! | TCTAATAACAAACATCTTTT+GGG | + | chr5_2:31378720-31378739 | Msa0767740:five_prime_UTR | 20.0% |
| !! | TCTTTAACAAAAAGGAAAAA+TGG | + | chr5_2:31379229-31379248 | Msa0767740:five_prime_UTR | 20.0% |
| !! | CTTTAACAAAAAGGAAAAAT+GGG | + | chr5_2:31379230-31379249 | Msa0767740:five_prime_UTR | 20.0% |
| !! | GAAAAATTCTAACACATTAA+AGG | - | chr5_2:31379352-31379371 | None:intergenic | 20.0% |
| !!! | AAAATCATGTAATCTTGTTT+TGG | + | chr5_2:31379536-31379555 | Msa0767740:five_prime_UTR | 20.0% |
| !! | GTCATATTTAGCTAAAAAAT+TGG | + | chr5_2:31379927-31379946 | Msa0767740:CDS | 20.0% |
| !! | ATATTTAGCTAAAAAATTGG+TGG | + | chr5_2:31379930-31379949 | Msa0767740:CDS | 20.0% |
| !! | TTTCTTATGCAAATAAACAA+TGG | - | chr5_2:31380636-31380655 | None:intergenic | 20.0% |
| !!! | TTACTGATAGCTTTAATATG+TGG | + | chr5_2:31377986-31378005 | Msa0767740:intron | 25.0% |
| !! | TGTTTATTTCTCCTTTGAAT+TGG | + | chr5_2:31378017-31378036 | Msa0767740:intron | 25.0% |
| ! | AAGAGAATAAAAGATGAAGA+AGG | + | chr5_2:31378280-31378299 | Msa0767740:five_prime_UTR | 25.0% |
| !! | ACAAAAACTTTTCTTTGTGA+CGG | - | chr5_2:31378448-31378467 | None:intergenic | 25.0% |
| !! | TTCTAAAAGAATGAAGGAAA+TGG | + | chr5_2:31378603-31378622 | Msa0767740:five_prime_UTR | 25.0% |
| ! | TGATGATTAAATCCAACAAA+CGG | - | chr5_2:31378841-31378860 | None:intergenic | 25.0% |
| ! | TGATCTGTTAAAATTGTCAT+CGG | - | chr5_2:31378967-31378986 | None:intergenic | 25.0% |
| ! | AAAATAATTAGATCGCTGAA+AGG | - | chr5_2:31379094-31379113 | None:intergenic | 25.0% |
| ! | ATATTCTTCGCCAAAATAAA+TGG | + | chr5_2:31379196-31379215 | Msa0767740:five_prime_UTR | 25.0% |
| !! | AATCTTGCATCCATTTATTT+TGG | - | chr5_2:31379209-31379228 | None:intergenic | 25.0% |
| ! | GCAAGATTTCTTTAACAAAA+AGG | + | chr5_2:31379221-31379240 | Msa0767740:five_prime_UTR | 25.0% |
| ! | AATTCTAACACATTAAAGGT+AGG | - | chr5_2:31379348-31379367 | None:intergenic | 25.0% |
| ! | ATGATGTTCATATTCAATGA+TGG | - | chr5_2:31379450-31379469 | None:intergenic | 25.0% |
| !!! | TGTCAACTTTTTCAATTTGT+TGG | + | chr5_2:31379673-31379692 | Msa0767740:CDS | 25.0% |
| !! | CGATTTAAGACAACTAATTT+AGG | - | chr5_2:31379841-31379860 | None:intergenic | 25.0% |
| ! | ATTGATTGGAAGAATACATT+TGG | + | chr5_2:31380544-31380563 | Msa0767740:CDS | 25.0% |
| ! | TTGATTGGAAGAATACATTT+GGG | + | chr5_2:31380545-31380564 | Msa0767740:CDS | 25.0% |
| ATTGTGTTGAAAGGTAGATT+GGG | - | chr5_2:31377834-31377853 | None:intergenic | 30.0% | |
| TATTGTGTTGAAAGGTAGAT+TGG | - | chr5_2:31377835-31377854 | None:intergenic | 30.0% | |
| TACGACATGGTTACAAATAT+AGG | + | chr5_2:31377853-31377872 | Msa0767740:five_prime_UTR | 30.0% | |
| ACGACATGGTTACAAATATA+GGG | + | chr5_2:31377854-31377873 | Msa0767740:five_prime_UTR | 30.0% | |
| TCAATTACCATTAGAATCTG+AGG | - | chr5_2:31377962-31377981 | None:intergenic | 30.0% | |
| ! | CTCTTTTACAGTGAAATTCA+AGG | + | chr5_2:31378054-31378073 | Msa0767740:intron | 30.0% |
| CATTGAAAATGATGTAACCT+TGG | + | chr5_2:31378081-31378100 | Msa0767740:five_prime_UTR | 30.0% | |
| TATAGTTCCAAATGTTGGTA+TGG | + | chr5_2:31378108-31378127 | Msa0767740:five_prime_UTR | 30.0% | |
| TCAAATTCCATACCAACATT+TGG | - | chr5_2:31378118-31378137 | None:intergenic | 30.0% | |
| ATACTGAAGATCATGCATAT+AGG | + | chr5_2:31378137-31378156 | Msa0767740:five_prime_UTR | 30.0% | |
| !! | AGGTTTTATAATATGTACGC+AGG | + | chr5_2:31378157-31378176 | Msa0767740:five_prime_UTR | 30.0% |
| !! | GTTTTAGCGTTAGAAAAGAT+TGG | + | chr5_2:31378188-31378207 | Msa0767740:five_prime_UTR | 30.0% |
| AGAATCCAATGGAAAATATG+TGG | + | chr5_2:31378360-31378379 | Msa0767740:five_prime_UTR | 30.0% | |
| ! | TGTAACCACATATTTTCCAT+TGG | - | chr5_2:31378368-31378387 | None:intergenic | 30.0% |
| TAAAAGAATGAAGGAAATGG+AGG | + | chr5_2:31378606-31378625 | Msa0767740:five_prime_UTR | 30.0% | |
| !! | GTTGTGGATTATGCTTATTT+TGG | + | chr5_2:31378757-31378776 | Msa0767740:five_prime_UTR | 30.0% |
| ATTCTTATTAGTGCGATAAG+TGG | - | chr5_2:31378803-31378822 | None:intergenic | 30.0% | |
| ! | ACTTTTCTTAAAGCTATGTG+TGG | + | chr5_2:31378934-31378953 | Msa0767740:five_prime_UTR | 30.0% |
| ! | AGGATGATTTTCTTAATGCT+TGG | + | chr5_2:31379154-31379173 | Msa0767740:five_prime_UTR | 30.0% |
| ! | GGATGATTTTCTTAATGCTT+GGG | + | chr5_2:31379155-31379174 | Msa0767740:five_prime_UTR | 30.0% |
| ! | CAATTAAGTGAGAGCTTTAA+TGG | + | chr5_2:31379300-31379319 | Msa0767740:five_prime_UTR | 30.0% |
| CGAACAAGAGAAAAAATTGT+CGG | - | chr5_2:31379504-31379523 | None:intergenic | 30.0% | |
| !!! | ACAATTTTTTCTCTTGTTCG+TGG | + | chr5_2:31379504-31379523 | Msa0767740:five_prime_UTR | 30.0% |
| !!! | CAATTTTTTCTCTTGTTCGT+GGG | + | chr5_2:31379505-31379524 | Msa0767740:five_prime_UTR | 30.0% |
| !!! | AATTTTTTCTCTTGTTCGTG+GGG | + | chr5_2:31379506-31379525 | Msa0767740:five_prime_UTR | 30.0% |
| AATATGATGTGTGCTTGTTT+GGG | + | chr5_2:31379593-31379612 | Msa0767740:five_prime_UTR | 30.0% | |
| CTATTCGAGTACTTAATCAT+TGG | + | chr5_2:31379713-31379732 | Msa0767740:CDS | 30.0% | |
| ! | CATCTCTTAAGGATGTATTT+TGG | - | chr5_2:31379757-31379776 | None:intergenic | 30.0% |
| CAAAATACATCCTTAAGAGA+TGG | + | chr5_2:31379755-31379774 | Msa0767740:CDS | 30.0% | |
| GCTAAAAAATTGGTGGAAAT+TGG | + | chr5_2:31379937-31379956 | Msa0767740:CDS | 30.0% | |
| !! | TTGAAAGCATCTTGAGTAAA+AGG | + | chr5_2:31379968-31379987 | Msa0767740:CDS | 30.0% |
| ! | TTCAATGCATCTGAAGTTAT+GGG | + | chr5_2:31380081-31380100 | Msa0767740:CDS | 30.0% |
| AGTTATGGGGATAAAAAAGA+AGG | + | chr5_2:31380095-31380114 | Msa0767740:CDS | 30.0% | |
| TCTACCTGTATAATTGGAAT+TGG | - | chr5_2:31380234-31380253 | None:intergenic | 30.0% | |
| ! | CAGAATGTATTGTTTTCACA+TGG | + | chr5_2:31380285-31380304 | Msa0767740:CDS | 30.0% |
| AATTGGTATTAATGCAACAC+AGG | + | chr5_2:31380326-31380345 | Msa0767740:CDS | 30.0% | |
| !!! | TCTTTTTTGTATGTGTCAGA+AGG | + | chr5_2:31380444-31380463 | Msa0767740:intron | 30.0% |
| !! | TCAATGTGACTTGTTGAAAA+TGG | - | chr5_2:31380529-31380548 | None:intergenic | 30.0% |
| TTTCAACAAGTCACATTGAT+TGG | + | chr5_2:31380530-31380549 | Msa0767740:CDS | 30.0% | |
| TTGTGTTGAAAGGTAGATTG+GGG | - | chr5_2:31377833-31377852 | None:intergenic | 35.0% | |
| CGACATGGTTACAAATATAG+GGG | + | chr5_2:31377855-31377874 | Msa0767740:five_prime_UTR | 35.0% | |
| ATTACCATTAGAATCTGAGG+TGG | - | chr5_2:31377959-31377978 | None:intergenic | 35.0% | |
| ! | ATTTGGAACTATATCGTCCA+AGG | - | chr5_2:31378101-31378120 | None:intergenic | 35.0% |
| GACGATATAGTTCCAAATGT+TGG | + | chr5_2:31378103-31378122 | Msa0767740:five_prime_UTR | 35.0% | |
| TCAAGCTACTGAAGTTGAAA+TGG | + | chr5_2:31378471-31378490 | Msa0767740:five_prime_UTR | 35.0% | |
| ! | AATTAGTTTCTGACGTATGC+CGG | - | chr5_2:31378506-31378525 | None:intergenic | 35.0% |
| !!! | CTTTTGGGTTGATGCTAAAA+TGG | + | chr5_2:31378735-31378754 | Msa0767740:five_prime_UTR | 35.0% |
| ! | CATCGAGAAAGTGTGTTATT+CGG | + | chr5_2:31378859-31378878 | Msa0767740:five_prime_UTR | 35.0% |
| AGACAGCTGAATCATTTAAG+TGG | + | chr5_2:31378902-31378921 | Msa0767740:five_prime_UTR | 35.0% | |
| CATAAACGATGATATGACTC+GGG | - | chr5_2:31379027-31379046 | None:intergenic | 35.0% | |
| GCATAAACGATGATATGACT+CGG | - | chr5_2:31379028-31379047 | None:intergenic | 35.0% | |
| CATATCATCGTTTATGCTTG+TGG | + | chr5_2:31379031-31379050 | Msa0767740:intron | 35.0% | |
| GAGTTGCAAAGTTGCATTTA+TGG | + | chr5_2:31379120-31379139 | Msa0767740:five_prime_UTR | 35.0% | |
| ! | CATTTATGGTTTCGAGTATG+AGG | + | chr5_2:31379134-31379153 | Msa0767740:five_prime_UTR | 35.0% |
| ! | CAAAAAGGAAAAATGGGCTT+CGG | + | chr5_2:31379236-31379255 | Msa0767740:five_prime_UTR | 35.0% |
| ! | AAAAATGGGCTTCGGTATAT+GGG | + | chr5_2:31379244-31379263 | Msa0767740:five_prime_UTR | 35.0% |
| ! | TAATTGTGTTGTTGTAGCAC+CGG | - | chr5_2:31379286-31379305 | None:intergenic | 35.0% |
| GCTTCATGTAAAGCCTTAAA+CGG | - | chr5_2:31379326-31379345 | None:intergenic | 35.0% | |
| GCTAGATGATATGCGATATA+AGG | + | chr5_2:31379389-31379408 | Msa0767740:five_prime_UTR | 35.0% | |
| AGATGATATGCGATATAAGG+AGG | + | chr5_2:31379392-31379411 | Msa0767740:five_prime_UTR | 35.0% | |
| TATTCAATGATGGCATCTTC+TGG | - | chr5_2:31379440-31379459 | None:intergenic | 35.0% | |
| GAATATGATGTGTGCTTGTT+TGG | + | chr5_2:31379592-31379611 | Msa0767740:five_prime_UTR | 35.0% | |
| ATATGATGTGTGCTTGTTTG+GGG | + | chr5_2:31379594-31379613 | Msa0767740:five_prime_UTR | 35.0% | |
| ACTTTGATCTTCAGAGTTGA+AGG | - | chr5_2:31379641-31379660 | None:intergenic | 35.0% | |
| GATTAAGTACTCGAATAGCA+TGG | - | chr5_2:31379711-31379730 | None:intergenic | 35.0% | |
| !! | CTCTTAAGGATGTATTTTGG+AGG | - | chr5_2:31379754-31379773 | None:intergenic | 35.0% |
| CATTCTTAGTCCATCTCTTA+AGG | - | chr5_2:31379768-31379787 | None:intergenic | 35.0% | |
| GGATGTGTTCTTGACAATAA+AGG | + | chr5_2:31379796-31379815 | Msa0767740:CDS | 35.0% | |
| AGTTGTCTTAAATCGCTCTA+AGG | + | chr5_2:31379846-31379865 | Msa0767740:CDS | 35.0% | |
| ! | CTTCAATGCATCTGAAGTTA+TGG | + | chr5_2:31380080-31380099 | Msa0767740:CDS | 35.0% |
| ! | TCAATGCATCTGAAGTTATG+GGG | + | chr5_2:31380082-31380101 | Msa0767740:CDS | 35.0% |
| ATGGGGATAAAAAAGAAGGA+TGG | + | chr5_2:31380099-31380118 | Msa0767740:CDS | 35.0% | |
| TTTCTCTCTAGACAACTCTT+AGG | - | chr5_2:31380147-31380166 | None:intergenic | 35.0% | |
| ATAATTGGAATTGGCATGGT+GGG | - | chr5_2:31380225-31380244 | None:intergenic | 35.0% | |
| TATAATTGGAATTGGCATGG+TGG | - | chr5_2:31380226-31380245 | None:intergenic | 35.0% | |
| CTGTATAATTGGAATTGGCA+TGG | - | chr5_2:31380229-31380248 | None:intergenic | 35.0% | |
| CATGCCAATTCCAATTATAC+AGG | + | chr5_2:31380227-31380246 | Msa0767740:CDS | 35.0% | |
| TGTCAAGATACACTAGCAAT+TGG | + | chr5_2:31380309-31380328 | Msa0767740:CDS | 35.0% | |
| TTCAGACATAATGAATGCAG+AGG | + | chr5_2:31380495-31380514 | Msa0767740:CDS | 35.0% | |
| ! | TTTTCTATTGTGCCTGAGAG+AGG | + | chr5_2:31377803-31377822 | Msa0767740:five_prime_UTR | 40.0% |
| CCATGTCGTATTGTGTTGAA+AGG | - | chr5_2:31377843-31377862 | None:intergenic | 40.0% | |
| CCTTTCAACACAATACGACA+TGG | + | chr5_2:31377840-31377859 | Msa0767740:five_prime_UTR | 40.0% | |
| AAGAACCTCACAAGATGGAT+GGG | - | chr5_2:31377893-31377912 | None:intergenic | 40.0% | |
| ATCCATCTTGTGAGGTTCTT+GGG | + | chr5_2:31377893-31377912 | Msa0767740:five_prime_UTR | 40.0% | |
| ! | AATATGTACGCAGGCTTTGT+TGG | + | chr5_2:31378166-31378185 | Msa0767740:five_prime_UTR | 40.0% |
| ACTCGCAAAGATATCAGAAC+TGG | + | chr5_2:31378310-31378329 | Msa0767740:five_prime_UTR | 40.0% | |
| AGAATGAAGGAAATGGAGGA+AGG | + | chr5_2:31378610-31378629 | Msa0767740:five_prime_UTR | 40.0% | |
| ! | GGTTGATGCTAAAATGGTTG+TGG | + | chr5_2:31378741-31378760 | Msa0767740:five_prime_UTR | 40.0% |
| AATCCAACAAACGGAGCAAA+TGG | - | chr5_2:31378832-31378851 | None:intergenic | 40.0% | |
| AACAGATCAAGATCCTGCAA+TGG | + | chr5_2:31378978-31378997 | Msa0767740:five_prime_UTR | 40.0% | |
| AATGGCAAAGGCAATTTCAG+AGG | + | chr5_2:31378996-31379015 | Msa0767740:five_prime_UTR | 40.0% | |
| ! | GAAAAATGGGCTTCGGTATA+TGG | + | chr5_2:31379243-31379262 | Msa0767740:five_prime_UTR | 40.0% |
| ! | AGAGCTTTAATGGCCGTTTA+AGG | + | chr5_2:31379310-31379329 | Msa0767740:five_prime_UTR | 40.0% |
| TGCGGTAGCAATATCATGTA+AGG | + | chr5_2:31379882-31379901 | Msa0767740:CDS | 40.0% | |
| CCTTGCTCTACCTGTATAAT+TGG | - | chr5_2:31380240-31380259 | None:intergenic | 40.0% | |
| CCAATTATACAGGTAGAGCA+AGG | + | chr5_2:31380237-31380256 | Msa0767740:CDS | 40.0% | |
| CAAGAACCTCACAAGATGGA+TGG | - | chr5_2:31377894-31377913 | None:intergenic | 45.0% | |
| CATCCATCTTGTGAGGTTCT+TGG | + | chr5_2:31377892-31377911 | Msa0767740:five_prime_UTR | 45.0% | |
| AACTGGTTGTTCAGCGCATT+TGG | + | chr5_2:31378327-31378346 | Msa0767740:five_prime_UTR | 45.0% | |
| TGTTCAGCGCATTTGGTCAT+TGG | + | chr5_2:31378334-31378353 | Msa0767740:five_prime_UTR | 45.0% | |
| GTCATTGGTCGAGAATCCAA+TGG | + | chr5_2:31378349-31378368 | Msa0767740:five_prime_UTR | 45.0% | |
| GGGTTGCAAGTTCATGGTTA+TGG | - | chr5_2:31378405-31378424 | None:intergenic | 45.0% | |
| CTGAAGTTGAAATGGCGAAC+CGG | + | chr5_2:31378479-31378498 | Msa0767740:five_prime_UTR | 45.0% | |
| GAGTTCATCAGTCGACAAGT+TGG | + | chr5_2:31378529-31378548 | Msa0767740:five_prime_UTR | 45.0% | |
| ! | TTCATCAGTCGACAAGTTGG+AGG | + | chr5_2:31378532-31378551 | Msa0767740:five_prime_UTR | 45.0% |
| ! | TCATCAGTCGACAAGTTGGA+GGG | + | chr5_2:31378533-31378552 | Msa0767740:five_prime_UTR | 45.0% |
| GTTGGAGGGAGAGAAAATGT+TGG | + | chr5_2:31378547-31378566 | Msa0767740:five_prime_UTR | 45.0% | |
| TCAAGATCCTGCAATGGCAA+AGG | + | chr5_2:31378984-31379003 | Msa0767740:five_prime_UTR | 45.0% | |
| GAAATTGCCTTTGCCATTGC+AGG | - | chr5_2:31378994-31379013 | None:intergenic | 45.0% | |
| TGGACTAAGAATGCTCGAAG+TGG | + | chr5_2:31379775-31379794 | Msa0767740:CDS | 45.0% | |
| TAAGGATTTGTGTCGCACTG+CGG | + | chr5_2:31379864-31379883 | Msa0767740:CDS | 45.0% | |
| TCCATACAGAGTGCAGATCA+TGG | + | chr5_2:31379994-31380013 | Msa0767740:CDS | 45.0% | |
| ACCATGATCTGCACTCTGTA+TGG | - | chr5_2:31379998-31380017 | None:intergenic | 45.0% | |
| AAGAAGGATGGTGTATCCAG+AGG | + | chr5_2:31380111-31380130 | Msa0767740:CDS | 45.0% | |
| GATGGTGTATCCAGAGGAAA+AGG | + | chr5_2:31380117-31380136 | Msa0767740:CDS | 45.0% | |
| ! | CTTAGGTCTACCTTTTCCTC+TGG | - | chr5_2:31380130-31380149 | None:intergenic | 45.0% |
| ! | GATTGGGGTTTTCCTCTCTC+AGG | - | chr5_2:31377818-31377837 | None:intergenic | 50.0% |
| TCCTACCCATCCATCTTGTG+AGG | + | chr5_2:31377885-31377904 | Msa0767740:five_prime_UTR | 50.0% | |
| ACCTCACAAGATGGATGGGT+AGG | - | chr5_2:31377889-31377908 | None:intergenic | 50.0% | |
| CTCCCAAGAACCTCACAAGA+TGG | - | chr5_2:31377898-31377917 | None:intergenic | 50.0% | |
| ! | CCATTAGAATCTGAGGTGGC+AGG | - | chr5_2:31377955-31377974 | None:intergenic | 50.0% |
| CCTGCCACCTCAGATTCTAA+TGG | + | chr5_2:31377952-31377971 | Msa0767740:five_prime_UTR | 50.0% | |
| CAACTTATGCCTACTCCTGG+GGG | - | chr5_2:31378425-31378444 | None:intergenic | 50.0% | |
| GCAACTTATGCCTACTCCTG+GGG | - | chr5_2:31378426-31378445 | None:intergenic | 50.0% | |
| GGCAACTTATGCCTACTCCT+GGG | - | chr5_2:31378427-31378446 | None:intergenic | 50.0% | |
| GAAGGAAATGGAGGAAGGTG+AGG | + | chr5_2:31378615-31378634 | Msa0767740:five_prime_UTR | 50.0% | |
| CGACCATTTGCTCCGTTTGT+TGG | + | chr5_2:31378826-31378845 | Msa0767740:five_prime_UTR | 50.0% | |
| ! | TGTGCTTGTTTGGGGCTATG+AGG | + | chr5_2:31379602-31379621 | Msa0767740:exon | 50.0% |
| CTCGAATAGCATGGCAGCAA+AGG | - | chr5_2:31379702-31379721 | None:intergenic | 50.0% | |
| ACCATGAACTTGCAACCCCC+AGG | + | chr5_2:31378407-31378426 | Msa0767740:five_prime_UTR | 55.0% | |
| TCCTGGGGGTTGCAAGTTCA+TGG | - | chr5_2:31378411-31378430 | None:intergenic | 55.0% | |
| AACTTGCAACCCCCAGGAGT+AGG | + | chr5_2:31378413-31378432 | Msa0767740:five_prime_UTR | 55.0% | |
| CGGCAACTTATGCCTACTCC+TGG | - | chr5_2:31378428-31378447 | None:intergenic | 55.0% | |
| GTTGAAATGGCGAACCGGTC+CGG | + | chr5_2:31378484-31378503 | Msa0767740:five_prime_UTR | 55.0% | |
| GTTTCTGACGTATGCCGGAC+CGG | - | chr5_2:31378501-31378520 | None:intergenic | 55.0% | |
| !!! | GGGCGACGCACTTTTTCAGC+CGG | + | chr5_2:31379264-31379283 | Msa0767740:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 31377787 | 31380684 | 31377787 | ID=Msa0767740;Name=Msa0767740 |
| chr5_2 | mRNA | 31377787 | 31380684 | 31377787 | ID=Msa0767740-mRNA-1;Parent=Msa0767740;Name=Msa0767740-mRNA-1;_AED=0.02;_eAED=0.02;_QI=1660|1|1|1|0.66|0.5|4|108|280 |
| chr5_2 | exon | 31377787 | 31377973 | 31377787 | ID=Msa0767740-mRNA-1:exon:11599;Parent=Msa0767740-mRNA-1 |
| chr5_2 | exon | 31378065 | 31379017 | 31378065 | ID=Msa0767740-mRNA-1:exon:11600;Parent=Msa0767740-mRNA-1 |
| chr5_2 | exon | 31379099 | 31380347 | 31379099 | ID=Msa0767740-mRNA-1:exon:11601;Parent=Msa0767740-mRNA-1 |
| chr5_2 | exon | 31380463 | 31380684 | 31380463 | ID=Msa0767740-mRNA-1:exon:11602;Parent=Msa0767740-mRNA-1 |
| chr5_2 | five_prime_UTR | 31377787 | 31377973 | 31377787 | ID=Msa0767740-mRNA-1:five_prime_utr;Parent=Msa0767740-mRNA-1 |
| chr5_2 | five_prime_UTR | 31378065 | 31379017 | 31378065 | ID=Msa0767740-mRNA-1:five_prime_utr;Parent=Msa0767740-mRNA-1 |
| chr5_2 | five_prime_UTR | 31379099 | 31379618 | 31379099 | ID=Msa0767740-mRNA-1:five_prime_utr;Parent=Msa0767740-mRNA-1 |
| chr5_2 | CDS | 31379619 | 31380347 | 31379619 | ID=Msa0767740-mRNA-1:cds;Parent=Msa0767740-mRNA-1 |
| chr5_2 | CDS | 31380463 | 31380576 | 31380463 | ID=Msa0767740-mRNA-1:cds;Parent=Msa0767740-mRNA-1 |
| chr5_2 | three_prime_UTR | 31380577 | 31380684 | 31380577 | ID=Msa0767740-mRNA-1:three_prime_utr;Parent=Msa0767740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
