AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0395790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0395790 MtrunA17_Chr3g0081661 93.641 802 44 5 36 835 1 797 0.0 1548
Msa0395790 MtrunA17_Chr6g0453291 27.834 794 444 21 86 831 22 734 1.17e-70 247
Msa0395790 MtrunA17_Chr4g0045621 27.638 796 445 21 86 831 22 736 2.75e-70 246
Msa0395790 MtrunA17_MTg0490851 32.836 134 84 3 223 355 1 129 1.76e-12 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0395790 AT1G74350.1 56.977 774 303 9 68 835 4 753 0.0 875
Msa0395790 AT5G04050.1 26.382 633 370 16 80 680 29 597 1.97e-51 191
Msa0395790 AT5G04050.2 27.579 504 290 14 114 596 53 502 8.54e-42 164
Msa0395790 ATMG00520.1 31.507 146 92 4 211 355 7 145 1.89e-11 68.2

Find 215 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAACTGTCAATGTTATTTA+TGG 0.132993 3_2:+12874498 None:intergenic
AGTTTACTGTATTAGGTTTA+TGG 0.137849 3_2:-12873807 Msa0395790:CDS
CCTTCTTTCTCCTCCTTTCC+AGG 0.210800 3_2:-12874875 Msa0395790:intron
TTGAGTTGCATACGGGTTTC+GGG 0.217797 3_2:+12874697 None:intergenic
TGCATACGGGTTTCGGGTTT+AGG 0.241241 3_2:+12874703 None:intergenic
TTTGAGTTGCATACGGGTTT+CGG 0.264694 3_2:+12874696 None:intergenic
GTGTTAAAGTTTACTGTATT+AGG 0.266445 3_2:-12873814 Msa0395790:CDS
CCCCTAAAATCAAAGAAAAT+TGG 0.268586 3_2:-12875063 None:intergenic
AGCTCGAGGCTTGGAATTAC+GGG 0.270404 3_2:-12873538 Msa0395790:CDS
GTAAGCGTCGGTGAGGGTTT+GGG 0.276024 3_2:+12874579 None:intergenic
CATTTGAAGGATTTGTATCT+TGG 0.285352 3_2:-12872540 Msa0395790:CDS
CGGTCTGTGTTTGTTGTCTT+TGG 0.297897 3_2:-12872742 Msa0395790:CDS
AAGTCTCCAAGCTGGAAAAC+TGG 0.305710 3_2:-12872621 Msa0395790:CDS
TGCTAACTTTAATGAGATAA+AGG 0.306233 3_2:-12872973 Msa0395790:CDS
ACAACTCTCAGCTTCAAATT+AGG 0.314092 3_2:+12874337 None:intergenic
ACTGAAGATGAAGGTTCTAT+TGG 0.316192 3_2:-12872408 Msa0395790:three_prime_UTR
CTGTTTCATAAACTCATAAA+AGG 0.323172 3_2:+12873256 None:intergenic
TCTGTTGAACTGTTATTATT+CGG 0.323647 3_2:+12873185 None:intergenic
GAGCGAGGGGCTGCATGATA+TGG 0.324243 3_2:-12869609 Msa0395790:three_prime_UTR
TGTAAGCGTCGGTGAGGGTT+TGG 0.330911 3_2:+12874578 None:intergenic
TTTGAAGCTGAGAGTTGTTC+AGG 0.345179 3_2:-12874332 Msa0395790:CDS
TGGTGCATTGATGGAGAAAT+TGG 0.352533 3_2:-12874146 Msa0395790:CDS
AAGCTCGAGGCTTGGAATTA+CGG 0.353247 3_2:-12873539 Msa0395790:CDS
GCATACGGGTTTCGGGTTTA+GGG 0.353642 3_2:+12874704 None:intergenic
GTCTAAGTTCGTCGGAGAAC+CGG 0.354417 3_2:-12873303 Msa0395790:CDS
GGGTTTAGGGTTAGTGTTGG+TGG 0.368514 3_2:+12874717 None:intergenic
GGATGAGTGTTTGTTTGATT+TGG 0.369946 3_2:-12874098 Msa0395790:CDS
TAGGGGCTGGTAGCGGTATT+CGG 0.373181 3_2:-12873658 Msa0395790:CDS
TGAAGTGGTGGTGGTGAGTT+TGG 0.383018 3_2:+12874943 None:intergenic
CGAGCTCTGCATTGCGCGGT+TGG 0.387488 3_2:-12873877 Msa0395790:CDS
CAATGATCGGTTTCCATCCC+AGG 0.389326 3_2:+12873398 None:intergenic
GGAATTTGATGGTGCATTGA+TGG 0.390818 3_2:-12874155 Msa0395790:CDS
TGTGATATCCTCGAGAAATT+CGG 0.391460 3_2:+12874274 None:intergenic
CTTACCGTCGTGGGAGAGTT+GGG 0.392582 3_2:+12874636 None:intergenic
AACGATGAGGCGTTAATGTA+TGG 0.393020 3_2:-12872777 Msa0395790:CDS
TTGCTTGTCATGCATGATAC+AGG 0.395554 3_2:-12873056 Msa0395790:CDS
TGTTTGATAGTGAGTTTCAT+AGG 0.396676 3_2:-12873958 Msa0395790:CDS
CTGAAGATTTCAAATTATGA+TGG 0.399864 3_2:-12871961 Msa0395790:three_prime_UTR
ATAAGCATTTGTTGAAGATA+TGG 0.402673 3_2:-12873373 Msa0395790:CDS
ATTCAGTACTTACTACTTGC+CGG 0.407730 3_2:-12872360 Msa0395790:three_prime_UTR
CACCTTGATGCCATTGTAAG+AGG 0.408442 3_2:+12869631 None:intergenic
CGAGGATATCACACGGTTGT+AGG 0.411461 3_2:-12874264 Msa0395790:CDS
AGATAAATATTCATCAAAAT+CGG 0.413094 3_2:+12873986 None:intergenic
TAAAAGTATGTTTGATGCTA+GGG 0.413233 3_2:-12874074 Msa0395790:CDS
TTCATCCAAGCTTAAATAAA+CGG 0.413342 3_2:-12872584 Msa0395790:CDS
TCAAAGTTTGACAGCATTTG+AGG 0.415476 3_2:-12869572 Msa0395790:three_prime_UTR
GTGGTGAGTTTGGCCATTGT+TGG 0.417685 3_2:+12874953 None:intergenic
TTGCTTGCCGCTGGCTGAAA+TGG 0.428587 3_2:-12873007 Msa0395790:CDS
CTTTGCAGAAGCTCGAGGCT+TGG 0.431185 3_2:-12873547 Msa0395790:CDS
CTCCACTTCACTGAAGATGA+AGG 0.436680 3_2:-12872417 Msa0395790:three_prime_UTR
TTAAAAGTATGTTTGATGCT+AGG 0.438130 3_2:-12874075 Msa0395790:CDS
ATACAGGCGAAATTATTGAT+TGG 0.438635 3_2:-12873040 Msa0395790:CDS
GGTTTAGGGTTAGTGTTGGT+GGG 0.440834 3_2:+12874718 None:intergenic
CGGCTAGAATAGGGAAGAAA+TGG 0.442179 3_2:-12873514 Msa0395790:CDS
GTTTACTTTGCTTGTGGAGA+AGG 0.445149 3_2:-12874176 Msa0395790:CDS
TGATAGTGAGTTTCATAGGT+TGG 0.448015 3_2:-12873954 Msa0395790:CDS
TAAGCGTCGGTGAGGGTTTG+GGG 0.448764 3_2:+12874580 None:intergenic
GGTCTATACTCTTCATGTAA+TGG 0.448910 3_2:-12872652 Msa0395790:CDS
GGGGATTTGAAACGACGGTT+TGG 0.451880 3_2:+12874599 None:intergenic
CCTCGCTTCCCTCGTCTCTC+CGG 0.452628 3_2:+12875027 None:intergenic
AATACAGTAAACTTTAACAC+TGG 0.454882 3_2:+12873817 None:intergenic
TCACTTCAGTCTGTTGACTT+TGG 0.455223 3_2:-12872510 Msa0395790:CDS
ATTACGGGACGGCTAGAATA+GGG 0.460886 3_2:-12873523 Msa0395790:CDS
TGAGCTGAAGCAGTAGCCTA+TGG 0.461107 3_2:-12871911 Msa0395790:intron
CGACGGTTTGGATTAAGTTA+CGG 0.463752 3_2:+12874611 None:intergenic
TTTCGGGGATTGCTTGCCGC+TGG 0.466701 3_2:-12873016 Msa0395790:CDS
TTCTCCGCATTTAGCGGAAA+CGG 0.468998 3_2:+12874528 None:intergenic
TTCGGGTTTAGGGTTAGTGT+TGG 0.469143 3_2:+12874714 None:intergenic
CGTCAAAACTACCTTCGTTA+AGG 0.469854 3_2:+12874449 None:intergenic
AGAAAGAAGGGGTGAATCTG+AGG 0.471436 3_2:+12874888 None:intergenic
TAGTAGCTCTCTCCTTACTA+AGG 0.474374 3_2:-12873438 Msa0395790:CDS
ATTGAATTCGAATGAGAAAG+AGG 0.475562 3_2:-12874380 Msa0395790:CDS
GTTGTGTAAGCAACATTTGA+AGG 0.476227 3_2:-12872553 Msa0395790:CDS
TACGAAGGTGTGCACGGTGA+TGG 0.480445 3_2:-12873923 Msa0395790:CDS
AGTCGCCGTTTATTTAAGCT+TGG 0.480607 3_2:+12872579 None:intergenic
TAATAACAGTTCAACAGATC+AGG 0.480684 3_2:-12873180 Msa0395790:CDS
AGAAAGAGTGAAGTGATTTG+AGG 0.482776 3_2:+12874915 None:intergenic
CTTAGCTTGGCCTCTTACAA+TGG 0.483531 3_2:-12869641 Msa0395790:three_prime_UTR
AGCAAAGTAAACCACCAATC+AGG 0.483747 3_2:+12874187 None:intergenic
AATTACGGGACGGCTAGAAT+AGG 0.486925 3_2:-12873524 Msa0395790:CDS
AACCTTCATCTTCAGTGAAG+TGG 0.486930 3_2:+12872415 None:intergenic
GCATGATTTCCTAATTTGAT+CGG 0.488312 3_2:+12872941 None:intergenic
AGAGTATAGACCCTTGGTGC+TGG 0.489743 3_2:+12872663 None:intergenic
TCACCTGATGTAGGATGATA+AGG 0.491539 3_2:+12871875 None:intergenic
TTTGAAAGAATCCTTGATGT+TGG 0.492293 3_2:-12873714 Msa0395790:CDS
TTCTCCGTGTCCTGTGTTGG+TGG 0.492718 3_2:+12872840 None:intergenic
GGGAAGAAATGGTTGGGTCA+TGG 0.493138 3_2:-12873503 Msa0395790:CDS
CTTGTGGAGAAGGAATTTGA+TGG 0.493196 3_2:-12874166 Msa0395790:CDS
TTTAGCGGAAACGGTTATGT+TGG 0.495608 3_2:+12874537 None:intergenic
ATGAATTGCATTGCAGAGAC+GGG 0.495644 3_2:-12872383 Msa0395790:three_prime_UTR
CTGGGATGGAAACCGATCAT+TGG 0.498087 3_2:-12873397 Msa0395790:CDS
CCAATGTGCTGCCTTGTGTA+GGG 0.499190 3_2:-12873676 Msa0395790:CDS
GTTATCTTCTCCGCATTTAG+CGG 0.499869 3_2:+12874522 None:intergenic
AAGATATGGATGCAGGATGT+TGG 0.501063 3_2:-12873359 Msa0395790:CDS
ATACCTTATCATCCTACATC+AGG 0.501224 3_2:-12871878 Msa0395790:intron
GTGCTGCCTTGTGTAGGGGC+TGG 0.502414 3_2:-12873671 Msa0395790:CDS
GCTTAAATAAACGGCGACTA+GGG 0.502810 3_2:-12872575 Msa0395790:CDS
GGAGTCAATGAATGAAGAAT+CGG 0.503362 3_2:-12872817 Msa0395790:CDS
GAGTTGTTCAGGAAGCGTTA+AGG 0.503875 3_2:-12874321 Msa0395790:CDS
CATGAATTGCATTGCAGAGA+CGG 0.504181 3_2:-12872384 Msa0395790:three_prime_UTR
GGTAATGGGAAACCTTAGTA+AGG 0.504519 3_2:+12873426 None:intergenic
ATTTAAGCTTGGATGAATGC+AGG 0.504713 3_2:+12872590 None:intergenic
GTTTCCCATTACCGAAAACC+TGG 0.508135 3_2:-12873416 Msa0395790:CDS
AGTCTCCAAGCTGGAAAACT+GGG 0.509157 3_2:-12872620 Msa0395790:CDS
AAACCGTTTGAGTTGCATAC+GGG 0.509602 3_2:+12874690 None:intergenic
GGTGATGGAGAGGGTGTTGG+TGG 0.509647 3_2:-12873908 Msa0395790:CDS
AGAAGGGGTGAATCTGAGGA+AGG 0.509773 3_2:+12874892 None:intergenic
TCCTTCTCCGTGTCCTGTGT+TGG 0.513688 3_2:+12872837 None:intergenic
GTTAACTCTTGCGGAAGAGC+CGG 0.515461 3_2:+12873284 None:intergenic
TATACCTTAATAAAATCTGC+CGG 0.516882 3_2:+12872341 None:intergenic
GTTGGGTCATGGTTTGAAGA+AGG 0.519901 3_2:-12873492 Msa0395790:CDS
CACGGTGATGGAGAGGGTGT+TGG 0.521688 3_2:-12873911 Msa0395790:CDS
GGTTTGATGAAGAACTTAGC+AGG 0.526190 3_2:-12872866 Msa0395790:CDS
CTGTTCAGCTCCAGCACCAA+GGG 0.526700 3_2:-12872673 Msa0395790:CDS
AGCTTAAATAAACGGCGACT+AGG 0.528737 3_2:-12872576 Msa0395790:CDS
TGTGCTCAATGCACTTAGCT+TGG 0.528832 3_2:-12869654 Msa0395790:three_prime_UTR
ATCTTCAGCAAGAGCTTCCA+AGG 0.529021 3_2:+12871976 None:intergenic
CAACCGCGCAATGCAGAGCT+CGG 0.531823 3_2:+12873878 None:intergenic
GGAGAGGGGTTGCCGCAAGA+AGG 0.531888 3_2:-12874019 Msa0395790:CDS
ACTTACCGTCGTGGGAGAGT+TGG 0.533613 3_2:+12874635 None:intergenic
AGAATAGGGAAGAAATGGTT+GGG 0.534694 3_2:-12873509 Msa0395790:CDS
GAGCTGAAGCAGTAGCCTAT+GGG 0.536286 3_2:-12871910 Msa0395790:three_prime_UTR
GGAGAAATTGGTTTGTGTGA+TGG 0.540767 3_2:-12874134 Msa0395790:CDS
ATCGCCAACATCCAACATCA+AGG 0.541618 3_2:+12873703 None:intergenic
TGTGATGGAGGATAAGATTG+AGG 0.542574 3_2:-12874119 Msa0395790:CDS
CCTGGAAAGGAGGAGAAAGA+AGG 0.542857 3_2:+12874875 None:intergenic
AAGGAATCTGTTAACTCTTG+CGG 0.543489 3_2:+12873275 None:intergenic
AGTCTGTTGACTTTGGTGCA+TGG 0.546418 3_2:-12872503 Msa0395790:CDS
CCATTACCGAAAACCTGGGA+TGG 0.547223 3_2:-12873411 Msa0395790:CDS
GTACTTTAGCAACAAAGTAT+CGG 0.548593 3_2:-12872914 Msa0395790:CDS
TAGAATAGGGAAGAAATGGT+TGG 0.555859 3_2:-12873510 Msa0395790:CDS
TTTGTTGAAGATATGGATGC+AGG 0.556126 3_2:-12873366 Msa0395790:CDS
GTGTGGTGAGTCCTGATTGG+TGG 0.557349 3_2:-12874198 Msa0395790:CDS
GAAACCGTTTGAGTTGCATA+CGG 0.560962 3_2:+12874689 None:intergenic
GAGGAAATTTGAAGTGGTGG+TGG 0.561838 3_2:+12874934 None:intergenic
GTTTGCTTTGCAGAAGCTCG+AGG 0.561989 3_2:-12873552 Msa0395790:CDS
GAGAGGGGTTGCCGCAAGAA+GGG 0.562241 3_2:-12874018 Msa0395790:CDS
AGGTATTAACTTTACCCCAT+AGG 0.562694 3_2:+12871895 None:intergenic
GGCCTCTTACAATGGCATCA+AGG 0.565020 3_2:-12869633 Msa0395790:three_prime_UTR
GCATTTGAGGTTGCAATCTG+AGG 0.567044 3_2:-12869559 None:intergenic
AAGGTGTGGTGAGTCCTGAT+TGG 0.568685 3_2:-12874201 Msa0395790:CDS
AAAGTATCGGATACATGAAA+CGG 0.569372 3_2:-12872901 Msa0395790:CDS
GAAAGAGGAAATGTTGATGT+TGG 0.571089 3_2:-12874365 Msa0395790:CDS
TAAGGGCAAGCATGTTACCT+TGG 0.571372 3_2:-12871993 Msa0395790:intron
GAAATTGGTTTGTGTGATGG+AGG 0.572562 3_2:-12874131 Msa0395790:CDS
TTGGTGGTTTACTTTGCTTG+TGG 0.573905 3_2:-12874182 Msa0395790:CDS
TCATGGTTTGAAGAAGGTAA+AGG 0.575187 3_2:-12873486 Msa0395790:CDS
ATACTCTTCATGTAATGGAA+AGG 0.575373 3_2:-12872647 Msa0395790:CDS
CTGGAAAGGAGGAGAAAGAA+GGG 0.576008 3_2:+12874876 None:intergenic
CAAATGCTTATACCAATGAT+CGG 0.577176 3_2:+12873385 None:intergenic
CCTTGTGTAGGGGCTGGTAG+CGG 0.580350 3_2:-12873665 Msa0395790:CDS
CACGGTTGTAGGAGTGGGAG+AGG 0.581102 3_2:-12874253 Msa0395790:CDS
TATCACACGGTTGTAGGAGT+GGG 0.582465 3_2:-12874258 Msa0395790:CDS
ACATGAAGAGTATAGACCCT+TGG 0.582561 3_2:+12872657 None:intergenic
AAAGGCAAAAGTCTCCAAGC+TGG 0.587004 3_2:-12872629 Msa0395790:CDS
AATGTGTTGTCTAAGTTCGT+CGG 0.589860 3_2:-12873311 Msa0395790:CDS
TTTGAGGAAATTTGAAGTGG+TGG 0.590399 3_2:+12874931 None:intergenic
ATGAGATACGAAGGTGTGCA+CGG 0.590430 3_2:-12873929 Msa0395790:CDS
GCGTTGAAGTATATATGTAA+AGG 0.591774 3_2:-12874220 Msa0395790:CDS
CAATGGCATCAAGGTGAGCG+AGG 0.593156 3_2:-12869624 Msa0395790:three_prime_UTR
GAATCCTTGATGTTGGATGT+TGG 0.597262 3_2:-12873707 Msa0395790:CDS
AAACCCGTATGCAACTCAAA+CGG 0.598774 3_2:-12874693 Msa0395790:CDS
ACCAATGTGCTGCCTTGTGT+AGG 0.601143 3_2:-12873677 Msa0395790:CDS
GAAAGCGGTTCATAAGATGA+AGG 0.605300 3_2:-12873588 Msa0395790:CDS
ATATCACACGGTTGTAGGAG+TGG 0.612755 3_2:-12874259 Msa0395790:CDS
TAGCAGGCTTCCACCAACAC+AGG 0.613207 3_2:-12872850 Msa0395790:CDS
GTTACGGAACTTACCGTCGT+GGG 0.613492 3_2:+12874627 None:intergenic
TATGGATTGACTACATCAGA+AGG 0.619122 3_2:-12873098 Msa0395790:CDS
AATGGCATCAAGGTGAGCGA+GGG 0.619716 3_2:-12869623 Msa0395790:three_prime_UTR
CAATGTGCTGCCTTGTGTAG+GGG 0.619976 3_2:-12873675 Msa0395790:CDS
TGTTTCACACCGGAGAGACG+AGG 0.620157 3_2:-12875036 Msa0395790:CDS
ACCAACACAGGACACGGAGA+AGG 0.620948 3_2:-12872838 Msa0395790:CDS
TCTCGTACCATTTCAGCCAG+CGG 0.622061 3_2:+12873000 None:intergenic
GCTTCCACCAACACAGGACA+CGG 0.622519 3_2:-12872844 Msa0395790:CDS
CACAGAATCTATTCCAACAA+TGG 0.623605 3_2:-12874966 Msa0395790:CDS
TTTGATGATGTTGTAAGCGT+CGG 0.623947 3_2:+12874567 None:intergenic
CCGGAGAGACGAGGGAAGCG+AGG 0.625269 3_2:-12875027 Msa0395790:CDS
AAGCCGAGCTCTGCATTGCG+CGG 0.628824 3_2:-12873881 Msa0395790:CDS
TAGGAGTGGGAGAGGACGTG+TGG 0.630882 3_2:-12874245 Msa0395790:CDS
GAAGTGTGTACCTGGAAAGG+AGG 0.634055 3_2:+12874865 None:intergenic
GTTTCACACCGGAGAGACGA+GGG 0.637054 3_2:-12875035 Msa0395790:CDS
AATTGGCTCGTGTTTCACAC+CGG 0.638497 3_2:-12875046 Msa0395790:CDS
GGTGAAGTGTGTACCTGGAA+AGG 0.641111 3_2:+12874862 None:intergenic
AGCTGAAGCAGTAGCCTATG+GGG 0.641833 3_2:-12871909 Msa0395790:three_prime_UTR
TTATTCTTTCATCGATGACG+TGG 0.643373 3_2:-12874479 Msa0395790:CDS
GAGTGGGAGAGGACGTGTGG+CGG 0.643410 3_2:-12874242 Msa0395790:CDS
TGATTTGAGGAAATTTGAAG+TGG 0.643913 3_2:+12874928 None:intergenic
GATGTTGTAAGCGTCGGTGA+GGG 0.644680 3_2:+12874573 None:intergenic
GGCGACAAAATCCCTTCTTG+CGG 0.645137 3_2:+12874007 None:intergenic
CCGCTACCAGCCCCTACACA+AGG 0.645346 3_2:+12873665 None:intergenic
ATGTATGGAATTACGTATAG+CGG 0.645639 3_2:-12872762 Msa0395790:CDS
AGAGAGTCATGCTGTGAAAG+CGG 0.646245 3_2:-12873603 Msa0395790:CDS
GCTGTTCAGCTCCAGCACCA+AGG 0.648069 3_2:-12872674 Msa0395790:CDS
TTTCCCATTACCGAAAACCT+GGG 0.649768 3_2:-12873415 Msa0395790:CDS
AGGTGTGCACGGTGATGGAG+AGG 0.649891 3_2:-12873918 Msa0395790:CDS
TGATGTTGTAAGCGTCGGTG+AGG 0.652066 3_2:+12874572 None:intergenic
AGAGAAGTATATATCTACTG+AGG 0.655353 3_2:-12873231 Msa0395790:CDS
CCCTACACAAGGCAGCACAT+TGG 0.659794 3_2:+12873676 None:intergenic
CCTATTACAAAACAATTACA+CGG 0.665079 3_2:+12872696 None:intergenic
ACATCATTCTCAGCACACGC+TGG 0.665249 3_2:-12874779 Msa0395790:CDS
ATAACCGTTTCCGCTAAATG+CGG 0.668871 3_2:-12874532 Msa0395790:CDS
CTTCAAACTGAACAGAGCTG+CGG 0.674734 3_2:-12875002 Msa0395790:CDS
AGTTACGGAACTTACCGTCG+TGG 0.675116 3_2:+12874626 None:intergenic
GGTTTGGGGATTTGAAACGA+CGG 0.677736 3_2:+12874594 None:intergenic
GAAGTATATATGTAAAGGTG+TGG 0.680404 3_2:-12874215 Msa0395790:CDS
ATGGCATCAAGGTGAGCGAG+GGG 0.684407 3_2:-12869622 Msa0395790:three_prime_UTR
GGTGTGCACGGTGATGGAGA+GGG 0.687539 3_2:-12873917 Msa0395790:CDS
TGGAAAGGAGGAGAAAGAAG+GGG 0.691573 3_2:+12874877 None:intergenic
AGGTTGGAGATGAGATACGA+AGG 0.696813 3_2:-12873938 Msa0395790:CDS
GTGGCAAAATGCCTTAACGA+AGG 0.700658 3_2:-12874460 Msa0395790:CDS
AAATCCCAACTCTCCCACGA+CGG 0.713782 3_2:-12874640 Msa0395790:CDS
CGAGGCTTGGAATTACGGGA+CGG 0.722205 3_2:-12873534 Msa0395790:CDS
ATGAAACGGAGATAGAAAAG+CGG 0.725169 3_2:-12872887 Msa0395790:CDS
CTACATCAGAAGGATTCGCG+CGG 0.741858 3_2:-12873088 Msa0395790:CDS
AATTTCTCGAGGATATCACA+CGG 0.755573 3_2:-12874271 Msa0395790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATAAATATTCATCAAAAT+CGG + chr3_2:12870631-12870650 None:intergenic 15.0%
!! AGATAAGTTATAATTAAGTT+GGG + chr3_2:12872588-12872607 None:intergenic 15.0%
!! AAGATAAGTTATAATTAAGT+TGG + chr3_2:12872589-12872608 None:intergenic 15.0%
!! ATCTTATAGTTAATAAATTC+AGG - chr3_2:12873018-12873037 Msa0395790:CDS 15.0%
!! TTGAATTTATGTAATAACTT+AGG + chr3_2:12873103-12873122 None:intergenic 15.0%
!! ATTAGATAGTAATAAAGAAA+GGG + chr3_2:12873308-12873327 None:intergenic 15.0%
!! TATTAGATAGTAATAAAGAA+AGG + chr3_2:12873309-12873328 None:intergenic 15.0%
!!! ATAACTGTCAATGTTATTTA+TGG + chr3_2:12870119-12870138 None:intergenic 20.0%
!!! GTTTTGTTATCATAAACTTT+TGG - chr3_2:12872149-12872168 Msa0395790:intron 20.0%
!!! TAAACTTTTGGTTTAAACTT+TGG - chr3_2:12872161-12872180 Msa0395790:intron 20.0%
!!! CAGATTTTATTAAGGTATAA+AGG - chr3_2:12872277-12872296 Msa0395790:intron 20.0%
!!! TTTTTTCACCATTTTACTAT+AGG - chr3_2:12872765-12872784 Msa0395790:CDS 20.0%
!! TATAAGATGATTCTCTTAAA+AGG + chr3_2:12873006-12873025 None:intergenic 20.0%
!! TTATAGTTAATAAATTCAGG+AGG - chr3_2:12873021-12873040 Msa0395790:CDS 20.0%
!! TTTAAATGACCATCTATTAT+TGG + chr3_2:12873068-12873087 None:intergenic 20.0%
!! AATTAGATTATGACTTTAGT+TGG + chr3_2:12873396-12873415 None:intergenic 20.0%
!! TATGGCAAATAAAGAAATTT+GGG + chr3_2:12873468-12873487 None:intergenic 20.0%
!! ATATGGCAAATAAAGAAATT+TGG + chr3_2:12873469-12873488 None:intergenic 20.0%
!! TATTTGCCATATAATAAGAT+AGG - chr3_2:12873477-12873496 Msa0395790:CDS 20.0%
!!! TTGTTTTTCTTATTCTTACA+AGG + chr3_2:12873506-12873525 None:intergenic 20.0%
!! TGTAAGAATAAGAAAAACAA+AGG - chr3_2:12873506-12873525 Msa0395790:CDS 20.0%
!! TTCTCAATTAAACAATGTAT+GGG - chr3_2:12874125-12874144 Msa0395790:CDS 20.0%
! ATGATAGTTGAGTATTTAAG+GGG + chr3_2:12869798-12869817 None:intergenic 25.0%
! GATGATAGTTGAGTATTTAA+GGG + chr3_2:12869799-12869818 None:intergenic 25.0%
! AGATGATAGTTGAGTATTTA+AGG + chr3_2:12869800-12869819 None:intergenic 25.0%
!!! AACTATCATCTTCTTTTTTC+AGG - chr3_2:12869809-12869828 Msa0395790:intron 25.0%
!! TTAAAAGTATGTTTGATGCT+AGG - chr3_2:12870539-12870558 Msa0395790:intron 25.0%
!! TAAAAGTATGTTTGATGCTA+GGG - chr3_2:12870540-12870559 Msa0395790:intron 25.0%
! AATACAGTAAACTTTAACAC+TGG + chr3_2:12870800-12870819 None:intergenic 25.0%
! GTGTTAAAGTTTACTGTATT+AGG - chr3_2:12870800-12870819 Msa0395790:intron 25.0%
! AGTTTACTGTATTAGGTTTA+TGG - chr3_2:12870807-12870826 Msa0395790:intron 25.0%
!!! TATGGATGAGATTTTTTTTG+CGG - chr3_2:12870825-12870844 Msa0395790:intron 25.0%
!! ATAAGCATTTGTTGAAGATA+TGG - chr3_2:12871241-12871260 Msa0395790:intron 25.0%
! CTGTTTCATAAACTCATAAA+AGG + chr3_2:12871361-12871380 None:intergenic 25.0%
! TCTGTTGAACTGTTATTATT+CGG + chr3_2:12871432-12871451 None:intergenic 25.0%
!!! CGAAATTATTGATTGGTTTT+CGG - chr3_2:12871581-12871600 Msa0395790:intron 25.0%
!!! GAAATTATTGATTGGTTTTC+GGG - chr3_2:12871582-12871601 Msa0395790:intron 25.0%
!!! AAATTATTGATTGGTTTTCG+GGG - chr3_2:12871583-12871602 Msa0395790:intron 25.0%
! TGCTAACTTTAATGAGATAA+AGG - chr3_2:12871641-12871660 Msa0395790:intron 25.0%
!! TTTTGATATCCGATCAAATT+AGG - chr3_2:12871664-12871683 Msa0395790:intron 25.0%
! CCTATTACAAAACAATTACA+CGG + chr3_2:12871921-12871940 None:intergenic 25.0%
! TTCATCCAAGCTTAAATAAA+CGG - chr3_2:12872030-12872049 Msa0395790:intron 25.0%
! TATACCTTAATAAAATCTGC+CGG + chr3_2:12872276-12872295 None:intergenic 25.0%
! ACTTAAAAAGTCATAGTTGA+AGG + chr3_2:12872316-12872335 None:intergenic 25.0%
!!! TAATTTTAGTGTCAGCTTTA+AGG - chr3_2:12872548-12872567 Msa0395790:CDS 25.0%
! TATCTTAATCTTCTTTCGTA+AGG - chr3_2:12872603-12872622 Msa0395790:CDS 25.0%
! ATCTTAATCTTCTTTCGTAA+GGG - chr3_2:12872604-12872623 Msa0395790:CDS 25.0%
! CTGAAGATTTCAAATTATGA+TGG - chr3_2:12872653-12872672 Msa0395790:CDS 25.0%
! TATTTGAACAGATAATTGAG+AGG + chr3_2:12872817-12872836 None:intergenic 25.0%
! GAACTGACAATTATTTATGT+TGG + chr3_2:12873207-12873226 None:intergenic 25.0%
! TAATTGGAAAGATAATAGAG+TGG + chr3_2:12873272-12873291 None:intergenic 25.0%
! ATGGCAAATAAAGAAATTTG+GGG + chr3_2:12873467-12873486 None:intergenic 25.0%
! AGGTAACCTATCTTATTATA+TGG + chr3_2:12873486-12873505 None:intergenic 25.0%
!! ATATTGTTTCACTTGATTTG+GGG + chr3_2:12873618-12873637 None:intergenic 25.0%
! GATATTGTTTCACTTGATTT+GGG + chr3_2:12873619-12873638 None:intergenic 25.0%
! TGATATTGTTTCACTTGATT+TGG + chr3_2:12873620-12873639 None:intergenic 25.0%
! TCAATTGATCATGAATGTAA+CGG - chr3_2:12873848-12873867 Msa0395790:CDS 25.0%
!! TTGGGTATTTTCGTAATTTT+GGG + chr3_2:12873931-12873950 None:intergenic 25.0%
!! TTTGGGTATTTTCGTAATTT+TGG + chr3_2:12873932-12873951 None:intergenic 25.0%
! GTTCTCAATTAAACAATGTA+TGG - chr3_2:12874124-12874143 Msa0395790:CDS 25.0%
! TCTCAATTAAACAATGTATG+GGG - chr3_2:12874126-12874145 Msa0395790:CDS 25.0%
! ATACACAATACAATCATTTC+AGG + chr3_2:12874472-12874491 None:intergenic 25.0%
! CAAACATCAAATGAAAGTAA+AGG + chr3_2:12874793-12874812 None:intergenic 25.0%
TGATTTGAGGAAATTTGAAG+TGG + chr3_2:12869689-12869708 None:intergenic 30.0%
TTGAGTATTTAAGGGGAAAT+TGG + chr3_2:12869791-12869810 None:intergenic 30.0%
!!! ATTTGACCCGTTTTTTGATT+CGG + chr3_2:12869958-12869977 None:intergenic 30.0%
ATTGAATTCGAATGAGAAAG+AGG - chr3_2:12870234-12870253 Msa0395790:intron 30.0%
GCGTTGAAGTATATATGTAA+AGG - chr3_2:12870394-12870413 Msa0395790:intron 30.0%
GAAGTATATATGTAAAGGTG+TGG - chr3_2:12870399-12870418 Msa0395790:intron 30.0%
!! TGTTTGATAGTGAGTTTCAT+AGG - chr3_2:12870656-12870675 Msa0395790:intron 30.0%
TTTGAAAGAATCCTTGATGT+TGG - chr3_2:12870900-12870919 Msa0395790:intron 30.0%
CAAATGCTTATACCAATGAT+CGG + chr3_2:12871232-12871251 None:intergenic 30.0%
! CAACACATTTTCTTCACTTT+TGG + chr3_2:12871292-12871311 None:intergenic 30.0%
! AGAGAAGTATATATCTACTG+AGG - chr3_2:12871383-12871402 Msa0395790:intron 30.0%
TAATAACAGTTCAACAGATC+AGG - chr3_2:12871434-12871453 Msa0395790:intron 30.0%
ATACAGGCGAAATTATTGAT+TGG - chr3_2:12871574-12871593 Msa0395790:intron 30.0%
GCATGATTTCCTAATTTGAT+CGG + chr3_2:12871676-12871695 None:intergenic 30.0%
GTACTTTAGCAACAAAGTAT+CGG - chr3_2:12871700-12871719 Msa0395790:intron 30.0%
!! AAAGTATCGGATACATGAAA+CGG - chr3_2:12871713-12871732 Msa0395790:intron 30.0%
ATGTATGGAATTACGTATAG+CGG - chr3_2:12871852-12871871 Msa0395790:intron 30.0%
!! CCGTGTAATTGTTTTGTAAT+AGG - chr3_2:12871918-12871937 Msa0395790:intron 30.0%
! ATACTCTTCATGTAATGGAA+AGG - chr3_2:12871967-12871986 Msa0395790:three_prime_UTR 30.0%
CATTTGAAGGATTTGTATCT+TGG - chr3_2:12872074-12872093 Msa0395790:intron 30.0%
! GGTATAAAGGTGATTCTTTT+TGG - chr3_2:12872290-12872309 Msa0395790:intron 30.0%
CAGGAAAACCTATAGTAAAA+TGG + chr3_2:12872776-12872795 None:intergenic 30.0%
TTTGTTTACAACAAGACTAG+AGG - chr3_2:12872975-12872994 Msa0395790:CDS 30.0%
TTGTTTACAACAAGACTAGA+GGG - chr3_2:12872976-12872995 Msa0395790:CDS 30.0%
TAACAGTAGCCAATAATAGA+TGG - chr3_2:12873056-12873075 Msa0395790:CDS 30.0%
AAATTCAAACAAGTTAGCCA+TGG - chr3_2:12873115-12873134 Msa0395790:CDS 30.0%
TAAACTTTCAACATGACACT+TGG - chr3_2:12873174-12873193 Msa0395790:CDS 30.0%
CAATTATTTATGTTGGCACT+TGG + chr3_2:12873200-12873219 None:intergenic 30.0%
! GGGAAGCAATTTTGTATAAT+TGG + chr3_2:12873288-12873307 None:intergenic 30.0%
!!! TATGATGGTGTGTTTTTTAG+TGG + chr3_2:12873721-12873740 None:intergenic 30.0%
CAATTGATCATGAATGTAAC+GGG - chr3_2:12873849-12873868 Msa0395790:CDS 30.0%
! TGGGTATTTTCGTAATTTTG+GGG + chr3_2:12873930-12873949 None:intergenic 30.0%
GAACAACGTCTCAAAAATTT+GGG + chr3_2:12873949-12873968 None:intergenic 30.0%
AGAACAACGTCTCAAAAATT+TGG + chr3_2:12873950-12873969 None:intergenic 30.0%
!!! AAATTTTTGAGACGTTGTTC+TGG - chr3_2:12873949-12873968 Msa0395790:CDS 30.0%
TACTATCATTTGAACGACAA+AGG + chr3_2:12874077-12874096 None:intergenic 30.0%
ATCTTGGAAAACACTTATCT+CGG + chr3_2:12874300-12874319 None:intergenic 30.0%
AAGAAATTTCACATCGAGAA+AGG - chr3_2:12874343-12874362 Msa0395790:CDS 30.0%
AGAAATTTCACATCGAGAAA+GGG - chr3_2:12874344-12874363 Msa0395790:CDS 30.0%
TGTATCGCGTATCATTAAAT+TGG - chr3_2:12874648-12874667 Msa0395790:CDS 30.0%
GCTATCATTGTATTAGTTGT+AGG - chr3_2:12874683-12874702 Msa0395790:CDS 30.0%
! AATATACATTTTGCCTGAAG+TGG - chr3_2:12874725-12874744 Msa0395790:CDS 30.0%
TGAAAGTAAAGGAACATAGT+AGG + chr3_2:12874782-12874801 None:intergenic 30.0%
ACAAGGAAATTGAATAGTGA+AGG + chr3_2:12874912-12874931 None:intergenic 30.0%
!! AATTTCCTTGTTATTGTAGC+AGG - chr3_2:12874921-12874940 Msa0395790:CDS 30.0%
CACAGAATCTATTCCAACAA+TGG - chr3_2:12869648-12869667 Msa0395790:three_prime_UTR 35.0%
! TTTGAGGAAATTTGAAGTGG+TGG + chr3_2:12869686-12869705 None:intergenic 35.0%
AGAAAGAGTGAAGTGATTTG+AGG + chr3_2:12869702-12869721 None:intergenic 35.0%
GAAATTGGAAGAGAAATGTG+AGG + chr3_2:12869776-12869795 None:intergenic 35.0%
!! TTTGATGATGTTGTAAGCGT+CGG + chr3_2:12870050-12870069 None:intergenic 35.0%
TTATTCTTTCATCGATGACG+TGG - chr3_2:12870135-12870154 Msa0395790:intron 35.0%
GAAAGAGGAAATGTTGATGT+TGG - chr3_2:12870249-12870268 Msa0395790:intron 35.0%
ACAACTCTCAGCTTCAAATT+AGG + chr3_2:12870280-12870299 None:intergenic 35.0%
TGTGATATCCTCGAGAAATT+CGG + chr3_2:12870343-12870362 None:intergenic 35.0%
AATTTCTCGAGGATATCACA+CGG - chr3_2:12870343-12870362 Msa0395790:intron 35.0%
GGATGAGTGTTTGTTTGATT+TGG - chr3_2:12870516-12870535 Msa0395790:intron 35.0%
!!! AGGGTTTTGAATCTTGAGTT+TGG - chr3_2:12870559-12870578 Msa0395790:intron 35.0%
!! GTTTTGAATCTTGAGTTTGG+TGG - chr3_2:12870562-12870581 Msa0395790:intron 35.0%
!! GAGTTTGGTGGTTTTTGTAA+AGG - chr3_2:12870574-12870593 Msa0395790:intron 35.0%
! TGATAGTGAGTTTCATAGGT+TGG - chr3_2:12870660-12870679 Msa0395790:intron 35.0%
!!! GAGATTTTTTTTGCGGTTTC+TGG - chr3_2:12870832-12870851 Msa0395790:intron 35.0%
!!! TATTCGGTTTTTGGGTACAT+TGG - chr3_2:12870972-12870991 Msa0395790:intron 35.0%
!! TTTTGGGTACATTGGTAAAG+AGG - chr3_2:12870980-12870999 Msa0395790:intron 35.0%
TAGAATAGGGAAGAAATGGT+TGG - chr3_2:12871104-12871123 Msa0395790:intron 35.0%
AGAATAGGGAAGAAATGGTT+GGG - chr3_2:12871105-12871124 Msa0395790:intron 35.0%
TCATGGTTTGAAGAAGGTAA+AGG - chr3_2:12871128-12871147 Msa0395790:intron 35.0%
TTTGTTGAAGATATGGATGC+AGG - chr3_2:12871248-12871267 Msa0395790:intron 35.0%
AATGTGTTGTCTAAGTTCGT+CGG - chr3_2:12871303-12871322 Msa0395790:intron 35.0%
AAGGAATCTGTTAACTCTTG+CGG + chr3_2:12871342-12871361 None:intergenic 35.0%
!!! CGCTTTTTTATTGCATAGAC+AGG + chr3_2:12871486-12871505 None:intergenic 35.0%
! TATGGATTGACTACATCAGA+AGG - chr3_2:12871516-12871535 Msa0395790:intron 35.0%
ATGAAACGGAGATAGAAAAG+CGG - chr3_2:12871727-12871746 Msa0395790:intron 35.0%
GGAGTCAATGAATGAAGAAT+CGG - chr3_2:12871797-12871816 Msa0395790:intron 35.0%
GGTCTATACTCTTCATGTAA+TGG - chr3_2:12871962-12871981 Msa0395790:three_prime_UTR 35.0%
ATTTAAGCTTGGATGAATGC+AGG + chr3_2:12872027-12872046 None:intergenic 35.0%
GTTGTGTAAGCAACATTTGA+AGG - chr3_2:12872061-12872080 Msa0395790:intron 35.0%
ACTGAAGATGAAGGTTCTAT+TGG - chr3_2:12872206-12872225 Msa0395790:intron 35.0%
ATTCAGTACTTACTACTTGC+CGG - chr3_2:12872254-12872273 Msa0395790:intron 35.0%
AAGCAACAAATAACAACGCA+CGG + chr3_2:12872506-12872525 None:intergenic 35.0%
AGGTATTAACTTTACCCCAT+AGG + chr3_2:12872722-12872741 None:intergenic 35.0%
ATACCTTATCATCCTACATC+AGG - chr3_2:12872736-12872755 Msa0395790:CDS 35.0%
AAAAAATGCTCACCTGATGT+AGG + chr3_2:12872751-12872770 None:intergenic 35.0%
GTACATACAAGTTACTCAAC+AGG + chr3_2:12872795-12872814 None:intergenic 35.0%
GTATTCTCGAATATCCTTCA+TGG + chr3_2:12872909-12872928 None:intergenic 35.0%
AAACAAGTTAGCCATGGAAT+AGG - chr3_2:12873121-12873140 Msa0395790:CDS 35.0%
GAAAGTAAGTTCCTATTCCA+TGG + chr3_2:12873135-12873154 None:intergenic 35.0%
ATACCCATGCTTCTTTATGA+GGG + chr3_2:12873346-12873365 None:intergenic 35.0%
! AACCAAATGTTGGTGTCTTA+GGG + chr3_2:12873537-12873556 None:intergenic 35.0%
!! ACACCAACATTTGGTTCTAT+AGG - chr3_2:12873541-12873560 Msa0395790:CDS 35.0%
ACATTAACACCCAGTACAAT+GGG + chr3_2:12873675-12873694 None:intergenic 35.0%
!! TTTTTAGTGGCACTCTTAAC+TGG + chr3_2:12873708-12873727 None:intergenic 35.0%
TACCACAGACACTTATAAAG+TGG + chr3_2:12873881-12873900 None:intergenic 35.0%
!! AATGGATTGATATGTTTGGC+TGG + chr3_2:12874031-12874050 None:intergenic 35.0%
!! CTGCAATGGATTGATATGTT+TGG + chr3_2:12874035-12874054 None:intergenic 35.0%
CAAACATATCAATCCATTGC+AGG - chr3_2:12874033-12874052 Msa0395790:CDS 35.0%
GATAGTAATCATCCACAGAA+AGG - chr3_2:12874090-12874109 Msa0395790:CDS 35.0%
ATTAAACAATGTATGGGGCA+TGG - chr3_2:12874131-12874150 Msa0395790:CDS 35.0%
CAATATGTACAGATTCGTTG+TGG - chr3_2:12874440-12874459 Msa0395790:CDS 35.0%
TAATCCCTGACATATTTGCA+CGG + chr3_2:12874500-12874519 None:intergenic 35.0%
TGAGATTGCAACATAATTCC+TGG + chr3_2:12874577-12874596 None:intergenic 35.0%
! AATGGTATTGAGTGTAAGCA+AGG + chr3_2:12874623-12874642 None:intergenic 35.0%
GATACGCGATACAGATTAAA+TGG + chr3_2:12874641-12874660 None:intergenic 35.0%
GAGAAATTAATCACCACTTC+AGG + chr3_2:12874741-12874760 None:intergenic 35.0%
AAGGAACATAGTAGGAAACT+TGG + chr3_2:12874774-12874793 None:intergenic 35.0%
TAACACCTGCTACAATAACA+AGG + chr3_2:12874929-12874948 None:intergenic 35.0%
TCAAAGTTTGACAGCATTTG+AGG - chr3_2:12875042-12875061 Msa0395790:CDS 35.0%
!! TTTGAGTTGCATACGGGTTT+CGG + chr3_2:12869921-12869940 None:intergenic 40.0%
AAACCCGTATGCAACTCAAA+CGG - chr3_2:12869921-12869940 Msa0395790:intron 40.0%
!! AAACCGTTTGAGTTGCATAC+GGG + chr3_2:12869927-12869946 None:intergenic 40.0%
!! GAAACCGTTTGAGTTGCATA+CGG + chr3_2:12869928-12869947 None:intergenic 40.0%
TCGAGCTCCGAATCAAAAAA+CGG - chr3_2:12869948-12869967 Msa0395790:intron 40.0%
! CGACGGTTTGGATTAAGTTA+CGG + chr3_2:12870006-12870025 None:intergenic 40.0%
TTTAGCGGAAACGGTTATGT+TGG + chr3_2:12870080-12870099 None:intergenic 40.0%
ATAACCGTTTCCGCTAAATG+CGG - chr3_2:12870082-12870101 Msa0395790:intron 40.0%
GTTATCTTCTCCGCATTTAG+CGG + chr3_2:12870095-12870114 None:intergenic 40.0%
CGTCAAAACTACCTTCGTTA+AGG + chr3_2:12870168-12870187 None:intergenic 40.0%
! TTTGAAGCTGAGAGTTGTTC+AGG - chr3_2:12870282-12870301 Msa0395790:intron 40.0%
!! TTTTCAAGCCGAATTTCTCG+AGG - chr3_2:12870332-12870351 Msa0395790:intron 40.0%
AGCAAAGTAAACCACCAATC+AGG + chr3_2:12870430-12870449 None:intergenic 40.0%
! TTGGTGGTTTACTTTGCTTG+TGG - chr3_2:12870432-12870451 Msa0395790:intron 40.0%
GTTTACTTTGCTTGTGGAGA+AGG - chr3_2:12870438-12870457 Msa0395790:intron 40.0%
CTTGTGGAGAAGGAATTTGA+TGG - chr3_2:12870448-12870467 Msa0395790:intron 40.0%
!! GGAATTTGATGGTGCATTGA+TGG - chr3_2:12870459-12870478 Msa0395790:intron 40.0%
! TGGTGCATTGATGGAGAAAT+TGG - chr3_2:12870468-12870487 Msa0395790:intron 40.0%
!! GGAGAAATTGGTTTGTGTGA+TGG - chr3_2:12870480-12870499 Msa0395790:intron 40.0%
!! GAAATTGGTTTGTGTGATGG+AGG - chr3_2:12870483-12870502 Msa0395790:intron 40.0%
! TGTGATGGAGGATAAGATTG+AGG - chr3_2:12870495-12870514 Msa0395790:intron 40.0%
! TGGTGGTTTTTGTAAAGGAG+AGG - chr3_2:12870579-12870598 Msa0395790:intron 40.0%
! GGTGGTTTTTGTAAAGGAGA+GGG - chr3_2:12870580-12870599 Msa0395790:intron 40.0%
! GTGGTTTTTGTAAAGGAGAG+GGG - chr3_2:12870581-12870600 Msa0395790:intron 40.0%
!!! TTTTGCGGTTTCTGGTTCTA+AGG - chr3_2:12870840-12870859 Msa0395790:intron 40.0%
GAATCCTTGATGTTGGATGT+TGG - chr3_2:12870907-12870926 Msa0395790:intron 40.0%
GAAAGCGGTTCATAAGATGA+AGG - chr3_2:12871026-12871045 Msa0395790:intron 40.0%
TAGTAGCTCTCTCCTTACTA+AGG - chr3_2:12871176-12871195 Msa0395790:intron 40.0%
!! GGTAATGGGAAACCTTAGTA+AGG + chr3_2:12871191-12871210 None:intergenic 40.0%
TTTCCCATTACCGAAAACCT+GGG - chr3_2:12871199-12871218 Msa0395790:intron 40.0%
AAGATATGGATGCAGGATGT+TGG - chr3_2:12871255-12871274 Msa0395790:intron 40.0%
!! AAAAAGCGTCTCGAGAGATA+TGG - chr3_2:12871498-12871517 Msa0395790:intron 40.0%
TTGCTTGTCATGCATGATAC+AGG - chr3_2:12871558-12871577 Msa0395790:intron 40.0%
GGTTTGATGAAGAACTTAGC+AGG - chr3_2:12871748-12871767 Msa0395790:intron 40.0%
! TGAAGTTTTCGACAACGATG+AGG - chr3_2:12871824-12871843 Msa0395790:intron 40.0%
! AACGATGAGGCGTTAATGTA+TGG - chr3_2:12871837-12871856 Msa0395790:intron 40.0%
! ACATGAAGAGTATAGACCCT+TGG + chr3_2:12871960-12871979 None:intergenic 40.0%
AGTCGCCGTTTATTTAAGCT+TGG + chr3_2:12872038-12872057 None:intergenic 40.0%
AGCTTAAATAAACGGCGACT+AGG - chr3_2:12872038-12872057 Msa0395790:intron 40.0%
GCTTAAATAAACGGCGACTA+GGG - chr3_2:12872039-12872058 Msa0395790:intron 40.0%
!! TCACTTCAGTCTGTTGACTT+TGG - chr3_2:12872104-12872123 Msa0395790:intron 40.0%
AACCTTCATCTTCAGTGAAG+TGG + chr3_2:12872202-12872221 None:intergenic 40.0%
CATGAATTGCATTGCAGAGA+CGG - chr3_2:12872230-12872249 Msa0395790:intron 40.0%
ATGAATTGCATTGCAGAGAC+GGG - chr3_2:12872231-12872250 Msa0395790:intron 40.0%
! CTTGCCGGCAGATTTTATTA+AGG - chr3_2:12872269-12872288 Msa0395790:intron 40.0%
!! GTGCGTTGTTATTTGTTGCT+TGG - chr3_2:12872505-12872524 Msa0395790:CDS 40.0%
TCACCTGATGTAGGATGATA+AGG + chr3_2:12872742-12872761 None:intergenic 40.0%
CACGAAACAAGTTTCCATGA+AGG - chr3_2:12872892-12872911 Msa0395790:CDS 40.0%
GATAATAGAGTGGTGCAAAC+AGG + chr3_2:12873262-12873281 None:intergenic 40.0%
CATACCCATGCTTCTTTATG+AGG + chr3_2:12873347-12873366 None:intergenic 40.0%
! ACCAAATGTTGGTGTCTTAG+GGG + chr3_2:12873536-12873555 None:intergenic 40.0%
! GAACCAAATGTTGGTGTCTT+AGG + chr3_2:12873538-12873557 None:intergenic 40.0%
CCTCCTATAGAACCAAATGT+TGG + chr3_2:12873547-12873566 None:intergenic 40.0%
!! CCAACATTTGGTTCTATAGG+AGG - chr3_2:12873544-12873563 Msa0395790:CDS 40.0%
CTGAGACATACAATCGCTAT+TGG + chr3_2:12873594-12873613 None:intergenic 40.0%
GTACAATGGGTATGATGTGA+AGG + chr3_2:12873662-12873681 None:intergenic 40.0%
TCACATCATACCCATTGTAC+TGG - chr3_2:12873662-12873681 Msa0395790:CDS 40.0%
CACATCATACCCATTGTACT+GGG - chr3_2:12873663-12873682 Msa0395790:CDS 40.0%
CACATTAACACCCAGTACAA+TGG + chr3_2:12873676-12873695 None:intergenic 40.0%
TCCAAGTGAAGAGGAATTGT+CGG - chr3_2:12873766-12873785 Msa0395790:CDS 40.0%
GAGGTGAAAGTTCTCAGTTT+CGG + chr3_2:12873823-12873842 None:intergenic 40.0%
TCATGATCAATTGACAAGCG+AGG + chr3_2:12873842-12873861 None:intergenic 40.0%
CACAGACACTTATAAAGTGG+TGG + chr3_2:12873878-12873897 None:intergenic 40.0%
CACCACTTTATAAGTGTCTG+TGG - chr3_2:12873876-12873895 Msa0395790:CDS 40.0%
!!! TTTTTGAGACGTTGTTCTGG+TGG - chr3_2:12873952-12873971 Msa0395790:CDS 40.0%
! CTCATAGTTGATTCCTGCAA+TGG + chr3_2:12874049-12874068 None:intergenic 40.0%
! CAGTGATGATGAATGGGATT+TGG + chr3_2:12874171-12874190 None:intergenic 40.0%
! CTATGGCAGTGATGATGAAT+GGG + chr3_2:12874177-12874196 None:intergenic 40.0%
CATTCATCATCACTGCCATA+GGG - chr3_2:12874176-12874195 Msa0395790:CDS 40.0%
ATTCATCATCACTGCCATAG+GGG - chr3_2:12874177-12874196 Msa0395790:CDS 40.0%
TGTGTGATTAGTGTGAAGAG+CGG - chr3_2:12874227-12874246 Msa0395790:CDS 40.0%
TCAGGTGTGTGAGTAAATCT+TGG + chr3_2:12874316-12874335 None:intergenic 40.0%
TGAAATTTCTTGTGCGACTC+AGG + chr3_2:12874334-12874353 None:intergenic 40.0%
ATTGACCGTGCAAATATGTC+AGG - chr3_2:12874492-12874511 Msa0395790:CDS 40.0%
TTGACCGTGCAAATATGTCA+GGG - chr3_2:12874493-12874512 Msa0395790:CDS 40.0%
GTATTGAGTGTAAGCAAGGA+AGG + chr3_2:12874619-12874638 None:intergenic 40.0%
!! AATTGGCTCGTGTTTCACAC+CGG - chr3_2:12869568-12869587 Msa0395790:three_prime_UTR 45.0%
CTTCAAACTGAACAGAGCTG+CGG - chr3_2:12869612-12869631 Msa0395790:three_prime_UTR 45.0%
! GAGGAAATTTGAAGTGGTGG+TGG + chr3_2:12869683-12869702 None:intergenic 45.0%
AGAAAGAAGGGGTGAATCTG+AGG + chr3_2:12869729-12869748 None:intergenic 45.0%
TGGAAAGGAGGAGAAAGAAG+GGG + chr3_2:12869740-12869759 None:intergenic 45.0%
CTGGAAAGGAGGAGAAAGAA+GGG + chr3_2:12869741-12869760 None:intergenic 45.0%
!! GGTTTAGGGTTAGTGTTGGT+GGG + chr3_2:12869899-12869918 None:intergenic 45.0%
! TTCGGGTTTAGGGTTAGTGT+TGG + chr3_2:12869903-12869922 None:intergenic 45.0%
! TTGAGTTGCATACGGGTTTC+GGG + chr3_2:12869920-12869939 None:intergenic 45.0%
CGAGCTCCGAATCAAAAAAC+GGG - chr3_2:12869949-12869968 Msa0395790:intron 45.0%
! GGTTTGGGGATTTGAAACGA+CGG + chr3_2:12870023-12870042 None:intergenic 45.0%
TTCTCCGCATTTAGCGGAAA+CGG + chr3_2:12870089-12870108 None:intergenic 45.0%
GTGGCAAAATGCCTTAACGA+AGG - chr3_2:12870154-12870173 Msa0395790:intron 45.0%
!! GAGTTGTTCAGGAAGCGTTA+AGG - chr3_2:12870293-12870312 Msa0395790:intron 45.0%
ATATCACACGGTTGTAGGAG+TGG - chr3_2:12870355-12870374 Msa0395790:intron 45.0%
TATCACACGGTTGTAGGAGT+GGG - chr3_2:12870356-12870375 Msa0395790:intron 45.0%
AGGTTGGAGATGAGATACGA+AGG - chr3_2:12870676-12870695 Msa0395790:intron 45.0%
! ATGAGATACGAAGGTGTGCA+CGG - chr3_2:12870685-12870704 Msa0395790:intron 45.0%
ATCGCCAACATCCAACATCA+AGG + chr3_2:12870914-12870933 None:intergenic 45.0%
!!! TGGTAGCGGTATTCGGTTTT+TGG - chr3_2:12870963-12870982 Msa0395790:intron 45.0%
!! GGTAGCGGTATTCGGTTTTT+GGG - chr3_2:12870964-12870983 Msa0395790:intron 45.0%
AGAGAGTCATGCTGTGAAAG+CGG - chr3_2:12871011-12871030 Msa0395790:intron 45.0%
AAGCTCGAGGCTTGGAATTA+CGG - chr3_2:12871075-12871094 Msa0395790:intron 45.0%
AATTACGGGACGGCTAGAAT+AGG - chr3_2:12871090-12871109 Msa0395790:intron 45.0%
ATTACGGGACGGCTAGAATA+GGG - chr3_2:12871091-12871110 Msa0395790:intron 45.0%
CGGCTAGAATAGGGAAGAAA+TGG - chr3_2:12871100-12871119 Msa0395790:intron 45.0%
GTTGGGTCATGGTTTGAAGA+AGG - chr3_2:12871122-12871141 Msa0395790:intron 45.0%
GTTTCCCATTACCGAAAACC+TGG - chr3_2:12871198-12871217 Msa0395790:intron 45.0%
! CATCCCAGGTTTTCGGTAAT+GGG + chr3_2:12871205-12871224 None:intergenic 45.0%
!! CGGTCTGTGTTTGTTGTCTT+TGG - chr3_2:12871872-12871891 Msa0395790:intron 45.0%
AAAGGCAAAAGTCTCCAAGC+TGG - chr3_2:12871985-12872004 Msa0395790:three_prime_UTR 45.0%
AAGTCTCCAAGCTGGAAAAC+TGG - chr3_2:12871993-12872012 Msa0395790:intron 45.0%
AGTCTCCAAGCTGGAAAACT+GGG - chr3_2:12871994-12872013 Msa0395790:intron 45.0%
! GAAAACCCAGTTTTCCAGCT+TGG + chr3_2:12872002-12872021 None:intergenic 45.0%
!! AGTCTGTTGACTTTGGTGCA+TGG - chr3_2:12872111-12872130 Msa0395790:intron 45.0%
CTCCACTTCACTGAAGATGA+AGG - chr3_2:12872197-12872216 Msa0395790:intron 45.0%
CACATGATTCCCATCAGAGA+CGG + chr3_2:12872450-12872469 None:intergenic 45.0%
TAAGGGCAAGCATGTTACCT+TGG - chr3_2:12872621-12872640 Msa0395790:CDS 45.0%
ATCTTCAGCAAGAGCTTCCA+AGG + chr3_2:12872641-12872660 None:intergenic 45.0%
AGTGGTGCAAACAGGAGTTA+TGG + chr3_2:12873254-12873273 None:intergenic 45.0%
ACCTCCCTCATAAAGAAGCA+TGG - chr3_2:12873339-12873358 Msa0395790:CDS 45.0%
! CCTCCCTCATAAAGAAGCAT+GGG - chr3_2:12873340-12873359 Msa0395790:CDS 45.0%
! AATTTGGGGTCGAAGAGTCT+TGG + chr3_2:12873453-12873472 None:intergenic 45.0%
TCCCCTAAGACACCAACATT+TGG - chr3_2:12873532-12873551 Msa0395790:CDS 45.0%
TAGTGGCACTCTTAACTGGT+TGG + chr3_2:12873704-12873723 None:intergenic 45.0%
CTGGGTCATTCTTGGTATGA+TGG + chr3_2:12873736-12873755 None:intergenic 45.0%
CCAAGTGAAGAGGAATTGTC+GGG - chr3_2:12873767-12873786 Msa0395790:CDS 45.0%
!! AAGAGTACTGGCTCCGTTTA+TGG + chr3_2:12873985-12874004 None:intergenic 45.0%
! CCTATGGCAGTGATGATGAA+TGG + chr3_2:12874178-12874197 None:intergenic 45.0%
CCATTCATCATCACTGCCAT+AGG - chr3_2:12874175-12874194 Msa0395790:CDS 45.0%
TTCATCATCACTGCCATAGG+GGG - chr3_2:12874178-12874197 Msa0395790:CDS 45.0%
CATCACATCACAGAAATCCC+AGG + chr3_2:12874209-12874228 None:intergenic 45.0%
! TTCGTGATGGTGATCTCTTG+AGG - chr3_2:12874252-12874271 Msa0395790:CDS 45.0%
AGGTGCAATTTCACGAAAGC+AGG - chr3_2:12874272-12874291 Msa0395790:CDS 45.0%
ACCTAGCTGATGAGATCGTT+TGG - chr3_2:12874371-12874390 Msa0395790:CDS 45.0%
CCTAGCTGATGAGATCGTTT+GGG - chr3_2:12874372-12874391 Msa0395790:CDS 45.0%
!! CAAGGAAGGAAGCATTGTCA+TGG + chr3_2:12874605-12874624 None:intergenic 45.0%
TGTGCTCAATGCACTTAGCT+TGG - chr3_2:12874960-12874979 Msa0395790:CDS 45.0%
! CTTAGCTTGGCCTCTTACAA+TGG - chr3_2:12874973-12874992 Msa0395790:CDS 45.0%
CACCTTGATGCCATTGTAAG+AGG + chr3_2:12874986-12875005 None:intergenic 45.0%
GTGGTGAGTTTGGCCATTGT+TGG + chr3_2:12869664-12869683 None:intergenic 50.0%
!! TGAAGTGGTGGTGGTGAGTT+TGG + chr3_2:12869674-12869693 None:intergenic 50.0%
AGAAGGGGTGAATCTGAGGA+AGG + chr3_2:12869725-12869744 None:intergenic 50.0%
CCTGGAAAGGAGGAGAAAGA+AGG + chr3_2:12869742-12869761 None:intergenic 50.0%
CCTTCTTTCTCCTCCTTTCC+AGG - chr3_2:12869739-12869758 Msa0395790:intron 50.0%
GAAGTGTGTACCTGGAAAGG+AGG + chr3_2:12869752-12869771 None:intergenic 50.0%
GGTGAAGTGTGTACCTGGAA+AGG + chr3_2:12869755-12869774 None:intergenic 50.0%
TGTGAGGTGAAGTGTGTACC+TGG + chr3_2:12869760-12869779 None:intergenic 50.0%
ACATCATTCTCAGCACACGC+TGG - chr3_2:12869835-12869854 Msa0395790:intron 50.0%
! GGGTTTAGGGTTAGTGTTGG+TGG + chr3_2:12869900-12869919 None:intergenic 50.0%
!! GCATACGGGTTTCGGGTTTA+GGG + chr3_2:12869913-12869932 None:intergenic 50.0%
!! TGCATACGGGTTTCGGGTTT+AGG + chr3_2:12869914-12869933 None:intergenic 50.0%
AAATCCCAACTCTCCCACGA+CGG - chr3_2:12869974-12869993 Msa0395790:intron 50.0%
GTTACGGAACTTACCGTCGT+GGG + chr3_2:12869990-12870009 None:intergenic 50.0%
AGTTACGGAACTTACCGTCG+TGG + chr3_2:12869991-12870010 None:intergenic 50.0%
! GGGGATTTGAAACGACGGTT+TGG + chr3_2:12870018-12870037 None:intergenic 50.0%
!! GATGTTGTAAGCGTCGGTGA+GGG + chr3_2:12870044-12870063 None:intergenic 50.0%
!! TGATGTTGTAAGCGTCGGTG+AGG + chr3_2:12870045-12870064 None:intergenic 50.0%
CGAGGATATCACACGGTTGT+AGG - chr3_2:12870350-12870369 Msa0395790:intron 50.0%
AAGGTGTGGTGAGTCCTGAT+TGG - chr3_2:12870413-12870432 Msa0395790:intron 50.0%
GGCGACAAAATCCCTTCTTG+CGG + chr3_2:12870610-12870629 None:intergenic 50.0%
ACCAATGTGCTGCCTTGTGT+AGG - chr3_2:12870937-12870956 Msa0395790:intron 50.0%
CCAATGTGCTGCCTTGTGTA+GGG - chr3_2:12870938-12870957 Msa0395790:intron 50.0%
CAATGTGCTGCCTTGTGTAG+GGG - chr3_2:12870939-12870958 Msa0395790:intron 50.0%
GTTTGCTTTGCAGAAGCTCG+AGG - chr3_2:12871062-12871081 Msa0395790:intron 50.0%
AGCTCGAGGCTTGGAATTAC+GGG - chr3_2:12871076-12871095 Msa0395790:intron 50.0%
GGGAAGAAATGGTTGGGTCA+TGG - chr3_2:12871111-12871130 Msa0395790:intron 50.0%
! CCATCCCAGGTTTTCGGTAA+TGG + chr3_2:12871206-12871225 None:intergenic 50.0%
CCATTACCGAAAACCTGGGA+TGG - chr3_2:12871203-12871222 Msa0395790:intron 50.0%
! CGGTTTCCATCCCAGGTTTT+CGG + chr3_2:12871212-12871231 None:intergenic 50.0%
! CAATGATCGGTTTCCATCCC+AGG + chr3_2:12871219-12871238 None:intergenic 50.0%
CTGGGATGGAAACCGATCAT+TGG - chr3_2:12871217-12871236 Msa0395790:intron 50.0%
GTCTAAGTTCGTCGGAGAAC+CGG - chr3_2:12871311-12871330 Msa0395790:intron 50.0%
GTTAACTCTTGCGGAAGAGC+CGG + chr3_2:12871333-12871352 None:intergenic 50.0%
CTACATCAGAAGGATTCGCG+CGG - chr3_2:12871526-12871545 Msa0395790:intron 50.0%
TCTCGTACCATTTCAGCCAG+CGG + chr3_2:12871617-12871636 None:intergenic 50.0%
! AGAGTATAGACCCTTGGTGC+TGG + chr3_2:12871954-12871973 None:intergenic 50.0%
TCTACTGTCTCCGTCTCTGA+TGG - chr3_2:12872437-12872456 Msa0395790:three_prime_UTR 50.0%
CTACTGTCTCCGTCTCTGAT+GGG - chr3_2:12872438-12872457 Msa0395790:three_prime_UTR 50.0%
TGGGAATCATGTGCGTGCTT+TGG - chr3_2:12872457-12872476 Msa0395790:three_prime_UTR 50.0%
TGAGCTGAAGCAGTAGCCTA+TGG - chr3_2:12872703-12872722 Msa0395790:CDS 50.0%
GAGCTGAAGCAGTAGCCTAT+GGG - chr3_2:12872704-12872723 Msa0395790:CDS 50.0%
AGCTGAAGCAGTAGCCTATG+GGG - chr3_2:12872705-12872724 Msa0395790:CDS 50.0%
CCCATGCTTCTTTATGAGGG+AGG + chr3_2:12873343-12873362 None:intergenic 50.0%
! ACAATCGCTATTGGCTGCCT+CGG + chr3_2:12873585-12873604 None:intergenic 50.0%
!! ATCGTGGACTGGGTCATTCT+TGG + chr3_2:12873744-12873763 None:intergenic 50.0%
CACTTGGACTATCGTGGACT+GGG + chr3_2:12873754-12873773 None:intergenic 50.0%
TCACTTGGACTATCGTGGAC+TGG + chr3_2:12873755-12873774 None:intergenic 50.0%
CCTCTTCACTTGGACTATCG+TGG + chr3_2:12873760-12873779 None:intergenic 50.0%
CCACGATAGTCCAAGTGAAG+AGG - chr3_2:12873757-12873776 Msa0395790:CDS 50.0%
CCCGACAATTCCTCTTCACT+TGG + chr3_2:12873770-12873789 None:intergenic 50.0%
TGGTGGCTGGGTTCCATAAA+CGG - chr3_2:12873969-12873988 Msa0395790:CDS 50.0%
CCAGTACTCTTGAAACCCAC+CGG - chr3_2:12873994-12874013 Msa0395790:CDS 50.0%
TCTTGAAACCCACCGGTGAA+AGG - chr3_2:12874001-12874020 Msa0395790:CDS 50.0%
TTGGCTGGTGATCCTTTCAC+CGG + chr3_2:12874016-12874035 None:intergenic 50.0%
TCCACAGAAAGGCTGAACGA+CGG - chr3_2:12874101-12874120 Msa0395790:CDS 50.0%
! GTGAAGAGCGGATTTCGTGA+TGG - chr3_2:12874239-12874258 Msa0395790:CDS 50.0%
CCCAAACGATCTCATCAGCT+AGG + chr3_2:12874375-12874394 None:intergenic 50.0%
AGCTGATGAGATCGTTTGGG+AGG - chr3_2:12874375-12874394 Msa0395790:CDS 50.0%
GGCCTCTTACAATGGCATCA+AGG - chr3_2:12874981-12875000 Msa0395790:CDS 50.0%
AATGGCATCAAGGTGAGCGA+GGG - chr3_2:12874991-12875010 Msa0395790:CDS 50.0%
TGTTTCACACCGGAGAGACG+AGG - chr3_2:12869578-12869597 Msa0395790:three_prime_UTR 55.0%
GTTTCACACCGGAGAGACGA+GGG - chr3_2:12869579-12869598 Msa0395790:three_prime_UTR 55.0%
CTTACCGTCGTGGGAGAGTT+GGG + chr3_2:12869981-12870000 None:intergenic 55.0%
ACTTACCGTCGTGGGAGAGT+TGG + chr3_2:12869982-12870001 None:intergenic 55.0%
!! TAAGCGTCGGTGAGGGTTTG+GGG + chr3_2:12870037-12870056 None:intergenic 55.0%
!! GTAAGCGTCGGTGAGGGTTT+GGG + chr3_2:12870038-12870057 None:intergenic 55.0%
!! TGTAAGCGTCGGTGAGGGTT+TGG + chr3_2:12870039-12870058 None:intergenic 55.0%
GTGTGGTGAGTCCTGATTGG+TGG - chr3_2:12870416-12870435 Msa0395790:intron 55.0%
! TACGAAGGTGTGCACGGTGA+TGG - chr3_2:12870691-12870710 Msa0395790:intron 55.0%
CCCTACACAAGGCAGCACAT+TGG + chr3_2:12870941-12870960 None:intergenic 55.0%
!! TAGGGGCTGGTAGCGGTATT+CGG - chr3_2:12870956-12870975 Msa0395790:intron 55.0%
CTTTGCAGAAGCTCGAGGCT+TGG - chr3_2:12871067-12871086 Msa0395790:intron 55.0%
CGAGGCTTGGAATTACGGGA+CGG - chr3_2:12871080-12871099 Msa0395790:intron 55.0%
! TTGCTTGCCGCTGGCTGAAA+TGG - chr3_2:12871607-12871626 Msa0395790:intron 55.0%
TAGCAGGCTTCCACCAACAC+AGG - chr3_2:12871764-12871783 Msa0395790:intron 55.0%
GCTTCCACCAACACAGGACA+CGG - chr3_2:12871770-12871789 Msa0395790:intron 55.0%
TTCTCCGTGTCCTGTGTTGG+TGG + chr3_2:12871777-12871796 None:intergenic 55.0%
ACCAACACAGGACACGGAGA+AGG - chr3_2:12871776-12871795 Msa0395790:intron 55.0%
TCCTTCTCCGTGTCCTGTGT+TGG + chr3_2:12871780-12871799 None:intergenic 55.0%
CTGTTCAGCTCCAGCACCAA+GGG - chr3_2:12871941-12871960 Msa0395790:intron 55.0%
! AATCGCTATTGGCTGCCTCG+GGG + chr3_2:12873583-12873602 None:intergenic 55.0%
! CAATCGCTATTGGCTGCCTC+GGG + chr3_2:12873584-12873603 None:intergenic 55.0%
TGAGACGTTGTTCTGGTGGC+TGG - chr3_2:12873956-12873975 Msa0395790:CDS 55.0%
GAGACGTTGTTCTGGTGGCT+GGG - chr3_2:12873957-12873976 Msa0395790:CDS 55.0%
! CCGGTGGGTTTCAAGAGTAC+TGG + chr3_2:12873997-12874016 None:intergenic 55.0%
CTGGTGATCCTTTCACCGGT+GGG + chr3_2:12874012-12874031 None:intergenic 55.0%
CCACAGAAAGGCTGAACGAC+GGG - chr3_2:12874102-12874121 Msa0395790:CDS 55.0%
ATCAATGTCTCCGTCGCTGG+TGG + chr3_2:12874402-12874421 None:intergenic 55.0%
GACATCAATGTCTCCGTCGC+TGG + chr3_2:12874405-12874424 None:intergenic 55.0%
CAATGGCATCAAGGTGAGCG+AGG - chr3_2:12874990-12875009 Msa0395790:CDS 55.0%
ATGGCATCAAGGTGAGCGAG+GGG - chr3_2:12874992-12875011 Msa0395790:CDS 55.0%
CACGGTTGTAGGAGTGGGAG+AGG - chr3_2:12870361-12870380 Msa0395790:intron 60.0%
TAGGAGTGGGAGAGGACGTG+TGG - chr3_2:12870369-12870388 Msa0395790:intron 60.0%
GAGAGGGGTTGCCGCAAGAA+GGG - chr3_2:12870596-12870615 Msa0395790:intron 60.0%
!! AGGTGTGCACGGTGATGGAG+AGG - chr3_2:12870696-12870715 Msa0395790:intron 60.0%
!! GGTGTGCACGGTGATGGAGA+GGG - chr3_2:12870697-12870716 Msa0395790:intron 60.0%
!! CACGGTGATGGAGAGGGTGT+TGG - chr3_2:12870703-12870722 Msa0395790:intron 60.0%
!! GGTGATGGAGAGGGTGTTGG+TGG - chr3_2:12870706-12870725 Msa0395790:intron 60.0%
AAGCCGAGCTCTGCATTGCG+CGG - chr3_2:12870733-12870752 Msa0395790:intron 60.0%
CAACCGCGCAATGCAGAGCT+CGG + chr3_2:12870739-12870758 None:intergenic 60.0%
! CCTTGTGTAGGGGCTGGTAG+CGG - chr3_2:12870949-12870968 Msa0395790:intron 60.0%
TTTCGGGGATTGCTTGCCGC+TGG - chr3_2:12871598-12871617 Msa0395790:intron 60.0%
GCTGTTCAGCTCCAGCACCA+AGG - chr3_2:12871940-12871959 Msa0395790:intron 60.0%
GGCACCTCATCAAATCCCCG+AGG - chr3_2:12873565-12873584 Msa0395790:CDS 60.0%
GCTGCCTCGGGGATTTGATG+AGG + chr3_2:12873572-12873591 None:intergenic 60.0%
GCTGGTGATCCTTTCACCGG+TGG + chr3_2:12874013-12874032 None:intergenic 60.0%
CCCGTCGTTCAGCCTTTCTG+TGG + chr3_2:12874105-12874124 None:intergenic 60.0%
TGCCATAGGGGGAATCGCCT+GGG - chr3_2:12874189-12874208 Msa0395790:CDS 60.0%
ATCCCAGGCGATTCCCCCTA+TGG + chr3_2:12874194-12874213 None:intergenic 60.0%
TTTGGGAGGACCACCAGCGA+CGG - chr3_2:12874389-12874408 Msa0395790:CDS 60.0%
GAGCGAGGGGCTGCATGATA+TGG - chr3_2:12875005-12875024 Msa0395790:CDS 60.0%
CCTCGCTTCCCTCGTCTCTC+CGG + chr3_2:12869590-12869609 None:intergenic 65.0%
GAGTGGGAGAGGACGTGTGG+CGG - chr3_2:12870372-12870391 Msa0395790:intron 65.0%
GGAGAGGGGTTGCCGCAAGA+AGG - chr3_2:12870595-12870614 Msa0395790:intron 65.0%
CGAGCTCTGCATTGCGCGGT+TGG - chr3_2:12870737-12870756 Msa0395790:intron 65.0%
GTGCTGCCTTGTGTAGGGGC+TGG - chr3_2:12870943-12870962 Msa0395790:intron 65.0%
CCGCTACCAGCCCCTACACA+AGG + chr3_2:12870952-12870971 None:intergenic 65.0%
CTGCCATAGGGGGAATCGCC+TGG - chr3_2:12874188-12874207 Msa0395790:CDS 65.0%
CCGGAGAGACGAGGGAAGCG+AGG - chr3_2:12869587-12869606 Msa0395790:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 12869562 12875074 12869562 ID=Msa0395790;Name=Msa0395790
chr3_2 mRNA 12869562 12875074 12869562 ID=Msa0395790-mRNA-1;Parent=Msa0395790;Name=Msa0395790-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|1|1|0.25|0.2|5|398|835
chr3_2 exon 12869562 12869696 12869562 ID=Msa0395790-mRNA-1:exon:3020;Parent=Msa0395790-mRNA-1
chr3_2 exon 12871879 12871929 12871879 ID=Msa0395790-mRNA-1:exon:3019;Parent=Msa0395790-mRNA-1
chr3_2 exon 12871951 12872011 12871951 ID=Msa0395790-mRNA-1:exon:3018;Parent=Msa0395790-mRNA-1
chr3_2 exon 12872346 12874805 12872346 ID=Msa0395790-mRNA-1:exon:3017;Parent=Msa0395790-mRNA-1
chr3_2 exon 12874876 12875074 12874876 ID=Msa0395790-mRNA-1:exon:3016;Parent=Msa0395790-mRNA-1
chr3_2 CDS 12874876 12875074 12874876 ID=Msa0395790-mRNA-1:cds;Parent=Msa0395790-mRNA-1
chr3_2 CDS 12872497 12874805 12872497 ID=Msa0395790-mRNA-1:cds;Parent=Msa0395790-mRNA-1
chr3_2 three_prime_UTR 12872346 12872496 12872346 ID=Msa0395790-mRNA-1:three_prime_utr;Parent=Msa0395790-mRNA-1
chr3_2 three_prime_UTR 12871951 12872011 12871951 ID=Msa0395790-mRNA-1:three_prime_utr;Parent=Msa0395790-mRNA-1
chr3_2 three_prime_UTR 12871879 12871929 12871879 ID=Msa0395790-mRNA-1:three_prime_utr;Parent=Msa0395790-mRNA-1
chr3_2 three_prime_UTR 12869562 12869696 12869562 ID=Msa0395790-mRNA-1:three_prime_utr;Parent=Msa0395790-mRNA-1
Gene Sequence

>Msa0395790

AAAGAAAATTGGCTCGTGTTTCACACCGGAGAGACGAGGGAAGCGAGGTTCTTCAAACTGAACAGAGCTGCGGCAAGAAGCAAGAACACAGAATCTATTCCAACAATGGCCAAACTCACCACCACCACTTCAAATTTCCTCAAATCACTTCACTCTTTCTCCTTCCTCAGATTCACCCCTTCTTTCTCCTCCTTTCCAGGTAAACATCATTCTCAGCACACGCTGGCAACAGAACTAGCTTCGTTAATCGAAGAAAACTCTTCACCCACCAACACTAACCCTAAACCCGAAACCCGTATGCAACTCAAACGGTTTCTCGAGCTCCGAATCAAAAAACGGGTCAAATCCCAACTCTCCCACGACGGTAAGTTCCGTAACTTAATCCAAACCGTCGTTTCAAATCCCCAAACCCTCACCGACGCTTACAACATCATCAAAATCAACTCCAACATAACCGTTTCCGCTAAATGCGGAGAAGATAACGCCATAAATAACATTGACAGTTATTCTTTCATCGATGACGTGGCAAAATGCCTTAACGAAGGTAGTTTTGACGTGAATATGAATACATATTCGATCTCAACGAGAAAGAAGAGAAAAAAATTGAATTCGAATGAGAAAGAGGAAATGTTGATGTTGGTGTTACCTAATTTGAAGCTGAGAGTTGTTCAGGAAGCGTTAAGGATTGTTTTAGAAGTGATTTTCAAGCCGAATTTCTCGAGGATATCACACGGTTGTAGGAGTGGGAGAGGACGTGTGGCGGCGTTGAAGTATATATGTAAAGGTGTGGTGAGTCCTGATTGGTGGTTTACTTTGCTTGTGGAGAAGGAATTTGATGGTGCATTGATGGAGAAATTGGTTTGTGTGATGGAGGATAAGATTGAGGATGAGTGTTTGTTTGATTTGGTTAAAAGTATGTTTGATGCTAGGGTTTTGAATCTTGAGTTTGGTGGTTTTTGTAAAGGAGAGGGGTTGCCGCAAGAAGGGATTTTGTCGCCGATTTTGATGAATATTTATCTTGATTTGTTTGATAGTGAGTTTCATAGGTTGGAGATGAGATACGAAGGTGTGCACGGTGATGGAGAGGGTGTTGGTGGAGATAAGCCGAGCTCTGCATTGCGCGGTTGGTTTCGTAGACAATTAGACTGTAATGTTGTTGAAAGTTCCAGTGTTAAAGTTTACTGTATTAGGTTTATGGATGAGATTTTTTTTGCGGTTTCTGGTTCTAAGGATTGTGCTGTTAATTTTAAGTCTGAGATTGAGAGTTATTTGAAAGAATCCTTGATGTTGGATGTTGGCGATCAAACCAATGTGCTGCCTTGTGTAGGGGCTGGTAGCGGTATTCGGTTTTTGGGTACATTGGTAAAGAGGAATGTTGAAGAGAGTCATGCTGTGAAAGCGGTTCATAAGATGAAGGATAAAGTTGAGTTGTTTGCTTTGCAGAAGCTCGAGGCTTGGAATTACGGGACGGCTAGAATAGGGAAGAAATGGTTGGGTCATGGTTTGAAGAAGGTAAAGGAATCAGAGATCAAACATTTAGCTGATAGTAGCTCTCTCCTTACTAAGGTTTCCCATTACCGAAAACCTGGGATGGAAACCGATCATTGGTATAAGCATTTGTTGAAGATATGGATGCAGGATGTTGGAGTGAAAAATGCCAAAAGTGAAGAAAATGTGTTGTCTAAGTTCGTCGGAGAACCGGCTCTTCCGCAAGAGTTAACAGATTCCTTTTATGAGTTTATGAAACAGACAGAGAAGTATATATCTACTGAGGCAGATTCAATTATCAAGCTTTTGCCGAATAATAACAGTTCAACAGATCAGGTTGTAGCTAAAACTGAAATCATTGCTCCTGTCTATGCAATAAAAAAGCGTCTCGAGAGATATGGATTGACTACATCAGAAGGATTCGCGCGGTCTACTAATTTGCTTGTCATGCATGATACAGGCGAAATTATTGATTGGTTTTCGGGGATTGCTTGCCGCTGGCTGAAATGGTACGAGAATTGTGCTAACTTTAATGAGATAAAGGTTTTGATATCCGATCAAATTAGGAAATCATGCATTCGTACTTTAGCAACAAAGTATCGGATACATGAAACGGAGATAGAAAAGCGGTTTGATGAAGAACTTAGCAGGCTTCCACCAACACAGGACACGGAGAAGGAGTCAATGAATGAAGAATCGGCTATTGAAGTTTTCGACAACGATGAGGCGTTAATGTATGGAATTACGTATAGCGGTCTGTGTTTGTTGTCTTTGGCAAGAATTGTGACTGAAGCAAGACCGTGTAATTGTTTTGTAATAGGCTGTTCAGCTCCAGCACCAAGGGTCTATACTCTTCATGTAATGGAAAGGCAAAAGTCTCCAAGCTGGAAAACTGGGTTTTCGACCTGCATTCATCCAAGCTTAAATAAACGGCGACTAGGGTTGTGTAAGCAACATTTGAAGGATTTGTATCTTGGTCATATATCACTTCAGTCTGTTGACTTTGGTGCATGGAAATGA
Protein sequence

>Msa0395790

KENWLVFHTGETREARFFKLNRAAARSKNTESIPTMAKLTTTTSNFLKSLHSFSFLRFTPSFSSFPGKHHSQHTLATELASLIEENSSPTNTNPKPETRMQLKRFLELRIKKRVKSQLSHDGKFRNLIQTVVSNPQTLTDAYNIIKINSNITVSAKCGEDNAINNIDSYSFIDDVAKCLNEGSFDVNMNTYSISTRKKRKKLNSNEKEEMLMLVLPNLKLRVVQEALRIVLEVIFKPNFSRISHGCRSGRGRVAALKYICKGVVSPDWWFTLLVEKEFDGALMEKLVCVMEDKIEDECLFDLVKSMFDARVLNLEFGGFCKGEGLPQEGILSPILMNIYLDLFDSEFHRLEMRYEGVHGDGEGVGGDKPSSALRGWFRRQLDCNVVESSSVKVYCIRFMDEIFFAVSGSKDCAVNFKSEIESYLKESLMLDVGDQTNVLPCVGAGSGIRFLGTLVKRNVEESHAVKAVHKMKDKVELFALQKLEAWNYGTARIGKKWLGHGLKKVKESEIKHLADSSSLLTKVSHYRKPGMETDHWYKHLLKIWMQDVGVKNAKSEENVLSKFVGEPALPQELTDSFYEFMKQTEKYISTEADSIIKLLPNNNSSTDQVVAKTEIIAPVYAIKKRLERYGLTTSEGFARSTNLLVMHDTGEIIDWFSGIACRWLKWYENCANFNEIKVLISDQIRKSCIRTLATKYRIHETEIEKRFDEELSRLPPTQDTEKESMNEESAIEVFDNDEALMYGITYSGLCLLSLARIVTEARPCNCFVIGCSAPAPRVYTLHVMERQKSPSWKTGFSTCIHPSLNKRRLGLCKQHLKDLYLGHISLQSVDFGAWK*