Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857680 | PNX71799.1 | 72.451 | 461 | 105 | 2 | 2 | 462 | 73 | 511 | 0.0 | 690 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857680 | sp|Q9SZL8|FRS5_ARATH | 33.333 | 282 | 187 | 1 | 1 | 281 | 360 | 641 | 5.20e-51 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857680 | A0A2K3KZX1 | 72.451 | 461 | 105 | 2 | 2 | 462 | 73 | 511 | 0.0 | 690 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0857680 | 0.816628 | 5.014513e-52 | -8.615850e-47 |
| Msa0095970 | Msa0857680 | 0.808490 | 3.018949e-50 | -8.615850e-47 |
| Msa0112810 | Msa0857680 | 0.913703 | 4.521102e-84 | -8.615850e-47 |
| Msa0114060 | Msa0857680 | 0.815151 | 1.070820e-51 | -8.615850e-47 |
| Msa0647170 | Msa0857680 | 0.805041 | 1.616495e-49 | -8.615850e-47 |
| Msa0697030 | Msa0857680 | 0.803019 | 4.256851e-49 | -8.615850e-47 |
| Msa0731940 | Msa0857680 | 0.838795 | 2.325478e-57 | -8.615850e-47 |
| Msa0767170 | Msa0857680 | 0.801043 | 1.084493e-48 | -8.615850e-47 |
| Msa0767740 | Msa0857680 | 0.858219 | 9.574953e-63 | -8.615850e-47 |
| Msa0810220 | Msa0857680 | 0.816111 | 6.545383e-52 | -8.615850e-47 |
| Msa0833290 | Msa0857680 | 0.811865 | 5.651882e-51 | -8.615850e-47 |
| Msa0833300 | Msa0857680 | 0.812067 | 5.107646e-51 | -8.615850e-47 |
| Msa0153910 | Msa0857680 | 0.813213 | 2.868299e-51 | -8.615850e-47 |
| Msa0157290 | Msa0857680 | 0.817061 | 4.008187e-52 | -8.615850e-47 |
| Msa0175740 | Msa0857680 | 0.809234 | 2.093031e-50 | -8.615850e-47 |
| Msa0180500 | Msa0857680 | 0.811109 | 8.252907e-51 | -8.615850e-47 |
| Msa0188460 | Msa0857680 | 0.811148 | 8.093582e-51 | -8.615850e-47 |
| Msa0208090 | Msa0857680 | 0.801655 | 8.126403e-49 | -8.615850e-47 |
| Msa0216910 | Msa0857680 | 0.809003 | 2.345648e-50 | -8.615850e-47 |
| Msa0406120 | Msa0857680 | 0.819741 | 9.905610e-53 | -8.615850e-47 |
| Msa0436780 | Msa0857680 | 0.814429 | 1.547468e-51 | -8.615850e-47 |
| Msa0437990 | Msa0857680 | 0.818810 | 1.614184e-52 | -8.615850e-47 |
| Msa0288100 | Msa0857680 | 0.800717 | 1.264143e-48 | -8.615850e-47 |
| Msa0351100 | Msa0857680 | 0.803391 | 3.565214e-49 | -8.615850e-47 |
| Msa0844490 | Msa0857680 | 0.817299 | 3.544647e-52 | -8.615850e-47 |
| Msa0857680 | Msa0880140 | 0.811241 | 7.723619e-51 | -8.615850e-47 |
| Msa0857680 | Msa0885280 | 0.821310 | 4.320913e-53 | -8.615850e-47 |
| Msa0857680 | Msa0897330 | 0.807371 | 5.222919e-50 | -8.615850e-47 |
| Msa0857680 | Msa0907260 | 0.801373 | 9.285485e-49 | -8.615850e-47 |
| Msa0857680 | Msa0938220 | 0.806918 | 6.515092e-50 | -8.615850e-47 |
| Msa0857680 | Msa0952720 | 0.802584 | 5.234617e-49 | -8.615850e-47 |
| Msa0857680 | Msa0953120 | 0.802012 | 6.863583e-49 | -8.615850e-47 |
| Msa0857680 | Msa0969520 | 0.806214 | 9.169190e-50 | -8.615850e-47 |
| Msa0857680 | Msa0974070 | 0.804477 | 2.119762e-49 | -8.615850e-47 |
| Msa0857680 | Msa0980090 | 0.812560 | 3.987269e-51 | -8.615850e-47 |
| Msa0857680 | Msa1014540 | 0.837188 | 6.021756e-57 | -8.615850e-47 |
| Msa0857680 | Msa1060840 | 0.802807 | 4.707224e-49 | -8.615850e-47 |
| Msa0857680 | Msa1075540 | 0.813514 | 2.462605e-51 | -8.615850e-47 |
| Msa0857680 | Msa1079180 | 0.812386 | 4.352150e-51 | -8.615850e-47 |
| Msa0857680 | Msa1112300 | 0.805026 | 1.627931e-49 | -8.615850e-47 |
| Msa0857680 | Msa1113170 | 0.810902 | 9.151060e-51 | -8.615850e-47 |
| Msa0857680 | Msa1121200 | 0.800480 | 1.413031e-48 | -8.615850e-47 |
| Msa0857680 | Msa1136090 | 0.805827 | 1.106309e-49 | -8.615850e-47 |
| Msa0857680 | Msa1149360 | 0.802692 | 4.971776e-49 | -8.615850e-47 |
| Msa0857680 | Msa1156020 | 0.812381 | 4.362378e-51 | -8.615850e-47 |
| Msa0857680 | Msa1169000 | 0.801697 | 7.967862e-49 | -8.615850e-47 |
| Msa0857680 | Msa1244250 | 0.804343 | 2.261044e-49 | -8.615850e-47 |
| Msa0857680 | Msa1253000 | 0.801240 | 9.885125e-49 | -8.615850e-47 |
| Msa0857680 | Msa1276890 | 0.802560 | 5.295142e-49 | -8.615850e-47 |
| Msa0857680 | Msa1277660 | 0.826627 | 2.445279e-54 | -8.615850e-47 |
| Msa0857680 | Msa1284680 | 0.807294 | 5.423755e-50 | -8.615850e-47 |
| Msa0857680 | Msa1346370 | 0.803623 | 3.191441e-49 | -8.615850e-47 |
| Msa0857680 | Msa1359040 | 0.805928 | 1.053156e-49 | -8.615850e-47 |
| Msa0857680 | Msa1404020 | 0.808533 | 2.955639e-50 | -8.615850e-47 |
| Msa0857680 | Msa1411020 | 0.800995 | 1.109563e-48 | -8.615850e-47 |
| Msa0857680 | Msa1420490 | 0.803036 | 4.222397e-49 | -8.615850e-47 |
| Msa0857680 | Msa1423390 | 0.802983 | 4.330941e-49 | -8.615850e-47 |
| Msa0857680 | Msa1440370 | 0.802890 | 4.526828e-49 | -8.615850e-47 |
| Msa0857680 | Msa1440810 | 0.802765 | 4.802725e-49 | -8.615850e-47 |
| Msa0857680 | Msa1466540 | 0.813247 | 2.819150e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857680 | MtrunA17_Chr6g0458391 | 42.491 | 273 | 157 | 0 | 2 | 274 | 493 | 765 | 1.67e-82 | 271 |
| Msa0857680 | MtrunA17_Chr1g0203721 | 37.941 | 340 | 211 | 0 | 2 | 341 | 351 | 690 | 1.93e-82 | 273 |
| Msa0857680 | MtrunA17_Chr3g0082121 | 40.882 | 340 | 196 | 2 | 2 | 340 | 321 | 656 | 4.94e-78 | 258 |
| Msa0857680 | MtrunA17_Chr2g0324011 | 37.329 | 292 | 182 | 1 | 2 | 292 | 295 | 586 | 1.32e-62 | 214 |
| Msa0857680 | MtrunA17_Chr5g0448761 | 33.571 | 280 | 185 | 1 | 1 | 279 | 351 | 630 | 8.73e-51 | 185 |
| Msa0857680 | MtrunA17_Chr8g0363841 | 30.933 | 375 | 239 | 9 | 2 | 364 | 303 | 669 | 1.06e-49 | 181 |
| Msa0857680 | MtrunA17_Chr5g0448511 | 28.470 | 281 | 200 | 1 | 1 | 280 | 123 | 403 | 1.07e-42 | 159 |
| Msa0857680 | MtrunA17_Chr3g0080351 | 29.245 | 318 | 220 | 1 | 3 | 320 | 352 | 664 | 2.20e-41 | 158 |
| Msa0857680 | MtrunA17_Chr3g0118611 | 31.169 | 308 | 205 | 4 | 1 | 306 | 229 | 531 | 2.75e-41 | 157 |
| Msa0857680 | MtrunA17_Chr5g0441581 | 30.120 | 332 | 219 | 7 | 3 | 326 | 307 | 633 | 1.05e-40 | 155 |
| Msa0857680 | MtrunA17_Chr2g0329031 | 27.861 | 402 | 265 | 7 | 2 | 391 | 290 | 678 | 1.19e-38 | 149 |
| Msa0857680 | MtrunA17_Chr1g0203051 | 31.559 | 263 | 173 | 3 | 1 | 261 | 364 | 621 | 3.15e-38 | 147 |
| Msa0857680 | MtrunA17_Chr2g0287651 | 28.963 | 328 | 205 | 8 | 2 | 318 | 363 | 673 | 4.40e-38 | 148 |
| Msa0857680 | MtrunA17_Chr5g0440451 | 27.841 | 352 | 243 | 5 | 1 | 348 | 332 | 676 | 2.17e-37 | 146 |
| Msa0857680 | MtrunA17_Chr1g0202341 | 27.240 | 279 | 192 | 2 | 2 | 274 | 336 | 609 | 3.60e-37 | 145 |
| Msa0857680 | MtrunA17_Chr2g0287061 | 31.560 | 282 | 185 | 4 | 1 | 280 | 432 | 707 | 7.51e-35 | 139 |
| Msa0857680 | MtrunA17_Chr1g0207551 | 28.013 | 307 | 214 | 3 | 3 | 308 | 318 | 618 | 1.03e-32 | 132 |
| Msa0857680 | MtrunA17_Chr1g0149131 | 52.381 | 105 | 50 | 0 | 2 | 106 | 8 | 112 | 1.71e-32 | 120 |
| Msa0857680 | MtrunA17_Chr6g0477261 | 27.907 | 344 | 196 | 10 | 2 | 317 | 167 | 486 | 2.53e-30 | 124 |
| Msa0857680 | MtrunA17_Chr1g0164591 | 50.000 | 108 | 54 | 0 | 2 | 109 | 201 | 308 | 7.83e-29 | 116 |
| Msa0857680 | MtrunA17_Chr1g0198761 | 27.397 | 292 | 202 | 4 | 2 | 287 | 343 | 630 | 8.21e-29 | 120 |
| Msa0857680 | MtrunA17_Chr2g0296781 | 29.801 | 302 | 179 | 10 | 2 | 281 | 278 | 568 | 2.71e-28 | 119 |
| Msa0857680 | MtrunA17_Chr1g0196541 | 26.220 | 328 | 214 | 6 | 3 | 317 | 279 | 591 | 5.43e-28 | 118 |
| Msa0857680 | MtrunA17_Chr2g0291581 | 26.042 | 288 | 204 | 4 | 2 | 281 | 342 | 628 | 1.33e-21 | 98.6 |
| Msa0857680 | MtrunA17_Chr2g0276841 | 26.510 | 298 | 202 | 6 | 2 | 292 | 361 | 648 | 2.51e-21 | 97.4 |
| Msa0857680 | MtrunA17_Chr2g0294841 | 26.715 | 277 | 182 | 7 | 2 | 269 | 339 | 603 | 7.04e-21 | 96.3 |
| Msa0857680 | MtrunA17_Chr2g0308841 | 24.215 | 223 | 167 | 2 | 53 | 273 | 4 | 226 | 1.38e-20 | 91.7 |
| Msa0857680 | MtrunA17_Chr2g0290391 | 26.316 | 285 | 188 | 7 | 2 | 280 | 350 | 618 | 1.21e-16 | 83.2 |
| Msa0857680 | MtrunA17_Chr5g0431001 | 31.200 | 125 | 84 | 2 | 2 | 125 | 357 | 480 | 3.80e-12 | 68.6 |
| Msa0857680 | MtrunA17_Chr2g0291591 | 26.203 | 187 | 137 | 1 | 2 | 188 | 345 | 530 | 1.61e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857680 | AT4G38180.1 | 33.333 | 282 | 187 | 1 | 1 | 281 | 360 | 641 | 5.28e-52 | 189 |
| Msa0857680 | AT3G22170.2 | 27.848 | 316 | 222 | 1 | 3 | 318 | 347 | 656 | 9.68e-39 | 150 |
| Msa0857680 | AT3G22170.1 | 27.848 | 316 | 222 | 1 | 3 | 318 | 347 | 656 | 9.68e-39 | 150 |
| Msa0857680 | AT3G06250.2 | 29.153 | 295 | 202 | 3 | 2 | 295 | 437 | 725 | 1.70e-37 | 147 |
| Msa0857680 | AT3G06250.1 | 29.153 | 295 | 202 | 3 | 2 | 295 | 437 | 725 | 1.70e-37 | 147 |
| Msa0857680 | AT3G06250.3 | 29.153 | 295 | 202 | 3 | 2 | 295 | 437 | 725 | 1.70e-37 | 147 |
| Msa0857680 | AT4G38170.1 | 26.642 | 274 | 200 | 1 | 2 | 274 | 126 | 399 | 1.76e-37 | 145 |
| Msa0857680 | AT4G15090.1 | 28.267 | 329 | 227 | 4 | 2 | 328 | 337 | 658 | 8.50e-37 | 145 |
| Msa0857680 | AT4G15090.5 | 28.267 | 329 | 227 | 4 | 2 | 328 | 337 | 658 | 8.50e-37 | 145 |
| Msa0857680 | AT4G15090.3 | 28.267 | 329 | 227 | 4 | 2 | 328 | 337 | 658 | 8.50e-37 | 145 |
| Msa0857680 | AT4G15090.2 | 28.267 | 329 | 227 | 4 | 2 | 328 | 337 | 658 | 8.50e-37 | 145 |
| Msa0857680 | AT4G15090.4 | 28.267 | 329 | 227 | 4 | 2 | 328 | 337 | 658 | 8.50e-37 | 145 |
| Msa0857680 | AT2G27110.3 | 27.697 | 343 | 237 | 5 | 1 | 340 | 162 | 496 | 1.02e-36 | 144 |
| Msa0857680 | AT2G27110.2 | 28.363 | 342 | 236 | 5 | 1 | 340 | 307 | 641 | 1.03e-36 | 145 |
| Msa0857680 | AT2G27110.1 | 28.363 | 342 | 236 | 5 | 1 | 340 | 307 | 641 | 1.03e-36 | 145 |
| Msa0857680 | AT5G18960.2 | 28.814 | 295 | 203 | 3 | 2 | 295 | 461 | 749 | 3.95e-35 | 140 |
| Msa0857680 | AT5G18960.1 | 28.814 | 295 | 203 | 3 | 2 | 295 | 461 | 749 | 3.95e-35 | 140 |
| Msa0857680 | AT1G76320.2 | 27.760 | 317 | 222 | 2 | 2 | 318 | 274 | 583 | 6.04e-34 | 136 |
| Msa0857680 | AT1G76320.3 | 27.760 | 317 | 222 | 2 | 2 | 318 | 274 | 583 | 6.32e-34 | 135 |
| Msa0857680 | AT1G76320.1 | 27.760 | 317 | 222 | 2 | 2 | 318 | 274 | 583 | 6.66e-34 | 136 |
| Msa0857680 | AT1G76320.4 | 27.760 | 317 | 222 | 2 | 2 | 318 | 274 | 583 | 6.66e-34 | 136 |
| Msa0857680 | AT4G19990.1 | 27.621 | 391 | 263 | 5 | 2 | 379 | 228 | 611 | 2.46e-33 | 134 |
| Msa0857680 | AT4G19990.5 | 27.621 | 391 | 263 | 5 | 2 | 379 | 285 | 668 | 3.37e-33 | 134 |
| Msa0857680 | AT4G19990.3 | 27.621 | 391 | 263 | 5 | 2 | 379 | 285 | 668 | 3.57e-33 | 134 |
| Msa0857680 | AT4G19990.4 | 27.621 | 391 | 263 | 5 | 2 | 379 | 285 | 668 | 3.57e-33 | 134 |
| Msa0857680 | AT4G19990.6 | 27.621 | 391 | 263 | 5 | 2 | 379 | 285 | 668 | 3.71e-33 | 134 |
| Msa0857680 | AT4G19990.2 | 27.621 | 391 | 263 | 5 | 2 | 379 | 285 | 668 | 3.71e-33 | 134 |
| Msa0857680 | AT4G19990.7 | 27.621 | 391 | 263 | 5 | 2 | 379 | 299 | 682 | 4.04e-33 | 134 |
| Msa0857680 | AT2G32250.5 | 25.688 | 327 | 238 | 1 | 2 | 328 | 281 | 602 | 2.85e-30 | 125 |
| Msa0857680 | AT2G32250.2 | 25.688 | 327 | 238 | 1 | 2 | 328 | 281 | 602 | 3.06e-30 | 125 |
| Msa0857680 | AT2G32250.4 | 25.688 | 327 | 238 | 1 | 2 | 328 | 281 | 602 | 3.06e-30 | 125 |
| Msa0857680 | AT2G32250.6 | 25.688 | 327 | 238 | 1 | 2 | 328 | 281 | 602 | 3.46e-30 | 125 |
| Msa0857680 | AT2G32250.1 | 25.688 | 327 | 238 | 1 | 2 | 328 | 281 | 602 | 3.46e-30 | 125 |
| Msa0857680 | AT2G32250.3 | 25.688 | 327 | 238 | 1 | 2 | 328 | 281 | 602 | 3.46e-30 | 125 |
| Msa0857680 | AT2G32250.7 | 25.688 | 327 | 238 | 1 | 2 | 328 | 240 | 561 | 3.51e-30 | 125 |
| Msa0857680 | AT2G32250.8 | 25.688 | 327 | 238 | 1 | 2 | 328 | 240 | 561 | 3.73e-30 | 125 |
| Msa0857680 | AT1G80010.1 | 29.021 | 286 | 181 | 7 | 3 | 274 | 384 | 661 | 3.81e-26 | 112 |
| Msa0857680 | AT1G10240.2 | 25.448 | 279 | 186 | 5 | 2 | 271 | 339 | 604 | 3.28e-21 | 97.8 |
| Msa0857680 | AT1G10240.1 | 25.448 | 279 | 186 | 5 | 2 | 271 | 339 | 604 | 3.28e-21 | 97.8 |
| Msa0857680 | AT1G52520.1 | 26.207 | 290 | 202 | 6 | 2 | 281 | 358 | 645 | 2.10e-20 | 95.1 |
| Msa0857680 | AT5G28530.5 | 23.920 | 301 | 194 | 7 | 2 | 289 | 291 | 569 | 6.82e-16 | 80.9 |
| Msa0857680 | AT5G28530.3 | 23.920 | 301 | 194 | 7 | 2 | 289 | 354 | 632 | 8.61e-16 | 80.9 |
| Msa0857680 | AT5G28530.2 | 23.920 | 301 | 194 | 7 | 2 | 289 | 354 | 632 | 8.61e-16 | 80.9 |
| Msa0857680 | AT5G28530.4 | 23.529 | 306 | 193 | 8 | 2 | 289 | 291 | 573 | 1.81e-15 | 79.7 |
| Msa0857680 | AT5G28530.1 | 23.529 | 306 | 193 | 8 | 2 | 289 | 354 | 636 | 2.34e-15 | 79.3 |
Find 66 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTTGCATCCATTTATTT+TGG | 0.162980 | 5_4:+53986972 | None:intergenic |
| GAGTTGCAAAGTTGCATTTA+TGG | 0.171824 | 5_4:-53987058 | Msa0857680:CDS |
| CCTTGCTCTACCTGTATAAT+TGG | 0.192215 | 5_4:+53985945 | None:intergenic |
| CAATTAAGTGAGAGCTTTAA+TGG | 0.201468 | 5_4:-53986878 | Msa0857680:CDS |
| CATCTCTTAAGGATGTATTT+TGG | 0.224916 | 5_4:+53986428 | None:intergenic |
| GCAAGATTTCTTTAACAAAA+AGG | 0.240784 | 5_4:-53986957 | Msa0857680:CDS |
| AGAGCTTTAATGGCCGTTTA+AGG | 0.266195 | 5_4:-53986868 | Msa0857680:CDS |
| TTGAAAACATCTTGAGTAAA+AGG | 0.286976 | 5_4:-53986214 | Msa0857680:CDS |
| AAAATCATGTAATCTTGTTT+TGG | 0.288784 | 5_4:-53986642 | Msa0857680:CDS |
| CTTCAATGCATCTGAAGTTA+TGG | 0.292580 | 5_4:-53986102 | Msa0857680:CDS |
| GAATATGATGTGTGCTTGTT+TGG | 0.292966 | 5_4:-53986590 | Msa0857680:CDS |
| GAAATTGCCTTTGCCATTGC+AGG | 0.294524 | 5_4:+53987187 | None:intergenic |
| ATAATCTTCGCCAAAATAAA+TGG | 0.309322 | 5_4:-53986982 | Msa0857680:CDS |
| AATATGATGTGTGCTTGTTT+GGG | 0.314379 | 5_4:-53986589 | Msa0857680:CDS |
| TCAATGTGACTTGTTGAAAA+TGG | 0.330148 | 5_4:+53985656 | None:intergenic |
| ATTGATTGGAAGAAGACATT+TGG | 0.334700 | 5_4:-53985638 | Msa0857680:CDS |
| GCTAGATGATATGCGATATA+AGG | 0.344976 | 5_4:-53986789 | Msa0857680:CDS |
| TTTCAACAAGTCACATTGAT+TGG | 0.348376 | 5_4:-53985652 | Msa0857680:CDS |
| TATTCAATGATGGCATCTTC+TGG | 0.352708 | 5_4:+53986741 | None:intergenic |
| AGTTGTCTTAAATCGCTCTA+AGG | 0.358984 | 5_4:-53986336 | Msa0857680:CDS |
| CATTCTTAGTCCATCTCTTA+AGG | 0.363154 | 5_4:+53986417 | None:intergenic |
| TTCAATGCATCTGAAGTTAT+GGG | 0.383526 | 5_4:-53986101 | Msa0857680:CDS |
| TCTACCTGTATAATTGGAAT+TGG | 0.389412 | 5_4:+53985951 | None:intergenic |
| CTATTCGAGTACTTAATCAT+TGG | 0.395437 | 5_4:-53986469 | Msa0857680:CDS |
| TTTCTCTCTAGACAACTCTT+AGG | 0.396099 | 5_4:+53986038 | None:intergenic |
| ACTTTGATCTTCAGAGTTGA+AGG | 0.396762 | 5_4:+53986544 | None:intergenic |
| TTGATTGGAAGAAGACATTT+GGG | 0.424679 | 5_4:-53985637 | Msa0857680:CDS |
| GGATGTGTTCTTGACAATAA+AGG | 0.432868 | 5_4:-53986386 | Msa0857680:CDS |
| ACCATGATCTGCACTCTGTA+TGG | 0.447129 | 5_4:+53986187 | None:intergenic |
| CATTTATGGTTTCGAGTATG+AGG | 0.463305 | 5_4:-53987044 | Msa0857680:CDS |
| CATGCCAATTCCAATTATAC+AGG | 0.465016 | 5_4:-53985955 | Msa0857680:CDS |
| CGATTTAAGACAACTAACTT+AGG | 0.473995 | 5_4:+53986344 | None:intergenic |
| GCTTCATGTAAAGCCTTAAA+CGG | 0.485722 | 5_4:+53986855 | None:intergenic |
| TGTCAAGATACACTAGCAAT+TGG | 0.487500 | 5_4:-53985873 | Msa0857680:CDS |
| TGCGGTAGCAATATCATGTA+AGG | 0.495096 | 5_4:-53986300 | Msa0857680:CDS |
| GATGGTGTATCCAGAGGAAA+AGG | 0.496843 | 5_4:-53986065 | Msa0857680:CDS |
| CATATCATCGTTTATGCTTG+TGG | 0.499690 | 5_4:-53987147 | Msa0857680:CDS |
| CTCGAATAGCATGGCAGCAA+AGG | 0.509751 | 5_4:+53986483 | None:intergenic |
| TGATCTGTTAAAATTGTCAT+CGG | 0.512471 | 5_4:+53987214 | None:intergenic |
| CAAAATACATCCTTAAGAGA+TGG | 0.525845 | 5_4:-53986427 | Msa0857680:CDS |
| ATGATGTTCATATTCAATGA+TGG | 0.538522 | 5_4:+53986731 | None:intergenic |
| TGTGCTTGTTTGGGGCTATG+AGG | 0.552398 | 5_4:-53986580 | Msa0857680:CDS |
| TTTCTTATGCAAATAAACAA+TGG | 0.564955 | 5_4:+53985549 | None:intergenic |
| TCCATACAGAGTGCAGATCA+TGG | 0.570905 | 5_4:-53986188 | Msa0857680:CDS |
| AATTCTAACACATTAAAGGT+AGG | 0.573003 | 5_4:+53986833 | None:intergenic |
| AATGGCAAAGGCAATTTCAG+AGG | 0.588293 | 5_4:-53987182 | Msa0857680:CDS |
| AATTGGTATTAATGCAACAC+AGG | 0.588865 | 5_4:-53985856 | Msa0857680:intron |
| TCAAGATCCTGCAATGGCAA+AGG | 0.589517 | 5_4:-53987194 | Msa0857680:CDS |
| CATAAACGATGATATGACTC+GGG | 0.591415 | 5_4:+53987154 | None:intergenic |
| TAATTGTGTTGTTGTAGCAC+CGG | 0.601043 | 5_4:+53986895 | None:intergenic |
| AACAGATCAAGATCCTGCAA+TGG | 0.602312 | 5_4:-53987200 | Msa0857680:CDS |
| GCATAAACGATGATATGACT+CGG | 0.604014 | 5_4:+53987153 | None:intergenic |
| AAAATAATTAGATCGCTGAA+AGG | 0.605255 | 5_4:+53987087 | None:intergenic |
| ATATGATGTGTGCTTGTTTG+GGG | 0.629556 | 5_4:-53986588 | Msa0857680:CDS |
| TGGACTAAGAATGCTCGAAG+TGG | 0.632229 | 5_4:-53986407 | Msa0857680:CDS |
| CCAATTATACAGGTAGAGCA+AGG | 0.633531 | 5_4:-53985945 | Msa0857680:CDS |
| ATAATTGGAATTGGCATGGT+GGG | 0.635857 | 5_4:+53985960 | None:intergenic |
| CTGTATAATTGGAATTGGCA+TGG | 0.648417 | 5_4:+53985956 | None:intergenic |
| TCAATGCATCTGAAGTTATG+GGG | 0.650769 | 5_4:-53986100 | Msa0857680:CDS |
| TTCAGAGATAACGAATGCAG+AGG | 0.657872 | 5_4:-53985687 | Msa0857680:CDS |
| GATTAAGTACTCGAATAGCA+TGG | 0.658504 | 5_4:+53986474 | None:intergenic |
| AGATGATATGCGATATAAGG+AGG | 0.661490 | 5_4:-53986786 | Msa0857680:CDS |
| AAGAAGGATGGTGTATCCAG+AGG | 0.663396 | 5_4:-53986071 | Msa0857680:CDS |
| TATAATTGGAATTGGCATGG+TGG | 0.708131 | 5_4:+53985959 | None:intergenic |
| TAAGGATTTGTGTCGCACTG+CGG | 0.718952 | 5_4:-53986318 | Msa0857680:CDS |
| TTATTGCTAGAAGAAAGTAG+TGG | 0.737366 | 5_4:+53985515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAAATTGATTTCAACA+TGG | + | chr5_4:53986974-53986993 | None:intergenic | 15.0% |
| !!! | AATAAAAATTGATTTCAACA+TGG | + | chr5_4:53986974-53986993 | None:intergenic | 15.0% |
| !! | TCTTTAACAAAAAGGAAAAA+TGG | - | chr5_4:53985782-53985801 | Msa0857680:intron | 20.0% |
| !! | CTTTAACAAAAAGGAAAAAT+GGG | - | chr5_4:53985783-53985802 | Msa0857680:intron | 20.0% |
| !! | GAAAAATTCTAACACATTAA+AGG | + | chr5_4:53985905-53985924 | None:intergenic | 20.0% |
| !!! | AAAATCATGTAATCTTGTTT+TGG | - | chr5_4:53986089-53986108 | Msa0857680:CDS | 20.0% |
| !! | GTCATATTTAGCTAAAAAAT+TGG | - | chr5_4:53986476-53986495 | Msa0857680:CDS | 20.0% |
| !! | ATATTTAGCTAAAAAATTGG+TGG | - | chr5_4:53986479-53986498 | Msa0857680:CDS | 20.0% |
| !! | TTTCTTATGCAAATAAACAA+TGG | + | chr5_4:53987185-53987204 | None:intergenic | 20.0% |
| !! | TCTTTAACAAAAAGGAAAAA+TGG | - | chr5_4:53985782-53985801 | Msa0857680:intron | 20.0% |
| !! | CTTTAACAAAAAGGAAAAAT+GGG | - | chr5_4:53985783-53985802 | Msa0857680:intron | 20.0% |
| !! | GAAAAATTCTAACACATTAA+AGG | + | chr5_4:53985905-53985924 | None:intergenic | 20.0% |
| !!! | AAAATCATGTAATCTTGTTT+TGG | - | chr5_4:53986089-53986108 | Msa0857680:CDS | 20.0% |
| !! | GTCATATTTAGCTAAAAAAT+TGG | - | chr5_4:53986476-53986495 | Msa0857680:CDS | 20.0% |
| !! | ATATTTAGCTAAAAAATTGG+TGG | - | chr5_4:53986479-53986498 | Msa0857680:CDS | 20.0% |
| !! | TTTCTTATGCAAATAAACAA+TGG | + | chr5_4:53987185-53987204 | None:intergenic | 20.0% |
| ! | AAAATAATTAGATCGCTGAA+AGG | + | chr5_4:53985647-53985666 | None:intergenic | 25.0% |
| ! | ATAATCTTCGCCAAAATAAA+TGG | - | chr5_4:53985749-53985768 | Msa0857680:intron | 25.0% |
| !! | AATCTTGCATCCATTTATTT+TGG | + | chr5_4:53985762-53985781 | None:intergenic | 25.0% |
| ! | GCAAGATTTCTTTAACAAAA+AGG | - | chr5_4:53985774-53985793 | Msa0857680:intron | 25.0% |
| ! | AATTCTAACACATTAAAGGT+AGG | + | chr5_4:53985901-53985920 | None:intergenic | 25.0% |
| ! | ATGATGTTCATATTCAATGA+TGG | + | chr5_4:53986003-53986022 | None:intergenic | 25.0% |
| !!! | TGTCAACTTTTTCAATTTGT+TGG | - | chr5_4:53986222-53986241 | Msa0857680:CDS | 25.0% |
| ! | TTGAAAACATCTTGAGTAAA+AGG | - | chr5_4:53986517-53986536 | Msa0857680:CDS | 25.0% |
| ! | AAAATAATTAGATCGCTGAA+AGG | + | chr5_4:53985647-53985666 | None:intergenic | 25.0% |
| ! | ATAATCTTCGCCAAAATAAA+TGG | - | chr5_4:53985749-53985768 | Msa0857680:intron | 25.0% |
| !! | AATCTTGCATCCATTTATTT+TGG | + | chr5_4:53985762-53985781 | None:intergenic | 25.0% |
| ! | GCAAGATTTCTTTAACAAAA+AGG | - | chr5_4:53985774-53985793 | Msa0857680:intron | 25.0% |
| ! | AATTCTAACACATTAAAGGT+AGG | + | chr5_4:53985901-53985920 | None:intergenic | 25.0% |
| ! | ATGATGTTCATATTCAATGA+TGG | + | chr5_4:53986003-53986022 | None:intergenic | 25.0% |
| !!! | TGTCAACTTTTTCAATTTGT+TGG | - | chr5_4:53986222-53986241 | Msa0857680:CDS | 25.0% |
| ! | TTGAAAACATCTTGAGTAAA+AGG | - | chr5_4:53986517-53986536 | Msa0857680:CDS | 25.0% |
| ! | CAATTAAGTGAGAGCTTTAA+TGG | - | chr5_4:53985853-53985872 | Msa0857680:intron | 30.0% |
| CGAACAAGAGAAAAAATTGT+CGG | + | chr5_4:53986057-53986076 | None:intergenic | 30.0% | |
| !!! | ACAATTTTTTCTCTTGTTCG+TGG | - | chr5_4:53986057-53986076 | Msa0857680:CDS | 30.0% |
| !!! | CAATTTTTTCTCTTGTTCGT+GGG | - | chr5_4:53986058-53986077 | Msa0857680:CDS | 30.0% |
| !!! | AATTTTTTCTCTTGTTCGTG+GGG | - | chr5_4:53986059-53986078 | Msa0857680:CDS | 30.0% |
| AATATGATGTGTGCTTGTTT+GGG | - | chr5_4:53986142-53986161 | Msa0857680:CDS | 30.0% | |
| CTATTCGAGTACTTAATCAT+TGG | - | chr5_4:53986262-53986281 | Msa0857680:CDS | 30.0% | |
| ! | CATCTCTTAAGGATGTATTT+TGG | + | chr5_4:53986306-53986325 | None:intergenic | 30.0% |
| CAAAATACATCCTTAAGAGA+TGG | - | chr5_4:53986304-53986323 | Msa0857680:CDS | 30.0% | |
| ! | CGATTTAAGACAACTAACTT+AGG | + | chr5_4:53986390-53986409 | None:intergenic | 30.0% |
| GCTAAAAAATTGGTGGAAAT+TGG | - | chr5_4:53986486-53986505 | Msa0857680:CDS | 30.0% | |
| ! | TTCAATGCATCTGAAGTTAT+GGG | - | chr5_4:53986630-53986649 | Msa0857680:CDS | 30.0% |
| AGTTATGGGGATAAAAAAGA+AGG | - | chr5_4:53986644-53986663 | Msa0857680:CDS | 30.0% | |
| TCTACCTGTATAATTGGAAT+TGG | + | chr5_4:53986783-53986802 | None:intergenic | 30.0% | |
| ! | CAGAATGTATTGTTTTCACA+TGG | - | chr5_4:53986834-53986853 | Msa0857680:CDS | 30.0% |
| AATTGGTATTAATGCAACAC+AGG | - | chr5_4:53986875-53986894 | Msa0857680:CDS | 30.0% | |
| !!! | TCTTTTTTGTATGTGTCAGA+AGG | - | chr5_4:53986993-53987012 | Msa0857680:CDS | 30.0% |
| !! | TCAATGTGACTTGTTGAAAA+TGG | + | chr5_4:53987078-53987097 | None:intergenic | 30.0% |
| TTTCAACAAGTCACATTGAT+TGG | - | chr5_4:53987079-53987098 | Msa0857680:CDS | 30.0% | |
| ATTGATTGGAAGAAGACATT+TGG | - | chr5_4:53987093-53987112 | Msa0857680:CDS | 30.0% | |
| TTGATTGGAAGAAGACATTT+GGG | - | chr5_4:53987094-53987113 | Msa0857680:CDS | 30.0% | |
| ! | CAATTAAGTGAGAGCTTTAA+TGG | - | chr5_4:53985853-53985872 | Msa0857680:intron | 30.0% |
| CGAACAAGAGAAAAAATTGT+CGG | + | chr5_4:53986057-53986076 | None:intergenic | 30.0% | |
| !!! | ACAATTTTTTCTCTTGTTCG+TGG | - | chr5_4:53986057-53986076 | Msa0857680:CDS | 30.0% |
| !!! | CAATTTTTTCTCTTGTTCGT+GGG | - | chr5_4:53986058-53986077 | Msa0857680:CDS | 30.0% |
| !!! | AATTTTTTCTCTTGTTCGTG+GGG | - | chr5_4:53986059-53986078 | Msa0857680:CDS | 30.0% |
| AATATGATGTGTGCTTGTTT+GGG | - | chr5_4:53986142-53986161 | Msa0857680:CDS | 30.0% | |
| CTATTCGAGTACTTAATCAT+TGG | - | chr5_4:53986262-53986281 | Msa0857680:CDS | 30.0% | |
| ! | CATCTCTTAAGGATGTATTT+TGG | + | chr5_4:53986306-53986325 | None:intergenic | 30.0% |
| CAAAATACATCCTTAAGAGA+TGG | - | chr5_4:53986304-53986323 | Msa0857680:CDS | 30.0% | |
| ! | CGATTTAAGACAACTAACTT+AGG | + | chr5_4:53986390-53986409 | None:intergenic | 30.0% |
| GCTAAAAAATTGGTGGAAAT+TGG | - | chr5_4:53986486-53986505 | Msa0857680:CDS | 30.0% | |
| ! | TTCAATGCATCTGAAGTTAT+GGG | - | chr5_4:53986630-53986649 | Msa0857680:CDS | 30.0% |
| AGTTATGGGGATAAAAAAGA+AGG | - | chr5_4:53986644-53986663 | Msa0857680:CDS | 30.0% | |
| TCTACCTGTATAATTGGAAT+TGG | + | chr5_4:53986783-53986802 | None:intergenic | 30.0% | |
| ! | CAGAATGTATTGTTTTCACA+TGG | - | chr5_4:53986834-53986853 | Msa0857680:CDS | 30.0% |
| AATTGGTATTAATGCAACAC+AGG | - | chr5_4:53986875-53986894 | Msa0857680:CDS | 30.0% | |
| !!! | TCTTTTTTGTATGTGTCAGA+AGG | - | chr5_4:53986993-53987012 | Msa0857680:CDS | 30.0% |
| !! | TCAATGTGACTTGTTGAAAA+TGG | + | chr5_4:53987078-53987097 | None:intergenic | 30.0% |
| TTTCAACAAGTCACATTGAT+TGG | - | chr5_4:53987079-53987098 | Msa0857680:CDS | 30.0% | |
| ATTGATTGGAAGAAGACATT+TGG | - | chr5_4:53987093-53987112 | Msa0857680:CDS | 30.0% | |
| TTGATTGGAAGAAGACATTT+GGG | - | chr5_4:53987094-53987113 | Msa0857680:CDS | 30.0% | |
| CATAAACGATGATATGACTC+GGG | + | chr5_4:53985580-53985599 | None:intergenic | 35.0% | |
| GCATAAACGATGATATGACT+CGG | + | chr5_4:53985581-53985600 | None:intergenic | 35.0% | |
| CATATCATCGTTTATGCTTG+TGG | - | chr5_4:53985584-53985603 | Msa0857680:three_prime_UTR | 35.0% | |
| GAGTTGCAAAGTTGCATTTA+TGG | - | chr5_4:53985673-53985692 | Msa0857680:CDS | 35.0% | |
| ! | CATTTATGGTTTCGAGTATG+AGG | - | chr5_4:53985687-53985706 | Msa0857680:CDS | 35.0% |
| ! | AGGATGATTTTCTGAATGCT+TGG | - | chr5_4:53985707-53985726 | Msa0857680:CDS | 35.0% |
| ! | GGATGATTTTCTGAATGCTT+GGG | - | chr5_4:53985708-53985727 | Msa0857680:CDS | 35.0% |
| ! | CAAAAAGGAAAAATGGGCTT+CGG | - | chr5_4:53985789-53985808 | Msa0857680:intron | 35.0% |
| ! | AAAAATGGGCTTCGGTATAT+GGG | - | chr5_4:53985797-53985816 | Msa0857680:intron | 35.0% |
| ! | TAATTGTGTTGTTGTAGCAC+CGG | + | chr5_4:53985839-53985858 | None:intergenic | 35.0% |
| GCTTCATGTAAAGCCTTAAA+CGG | + | chr5_4:53985879-53985898 | None:intergenic | 35.0% | |
| GCTAGATGATATGCGATATA+AGG | - | chr5_4:53985942-53985961 | Msa0857680:CDS | 35.0% | |
| AGATGATATGCGATATAAGG+AGG | - | chr5_4:53985945-53985964 | Msa0857680:CDS | 35.0% | |
| TATTCAATGATGGCATCTTC+TGG | + | chr5_4:53985993-53986012 | None:intergenic | 35.0% | |
| GAATATGATGTGTGCTTGTT+TGG | - | chr5_4:53986141-53986160 | Msa0857680:CDS | 35.0% | |
| ATATGATGTGTGCTTGTTTG+GGG | - | chr5_4:53986143-53986162 | Msa0857680:CDS | 35.0% | |
| ACTTTGATCTTCAGAGTTGA+AGG | + | chr5_4:53986190-53986209 | None:intergenic | 35.0% | |
| GATTAAGTACTCGAATAGCA+TGG | + | chr5_4:53986260-53986279 | None:intergenic | 35.0% | |
| !! | CTCTTAAGGATGTATTTTGG+AGG | + | chr5_4:53986303-53986322 | None:intergenic | 35.0% |
| CATTCTTAGTCCATCTCTTA+AGG | + | chr5_4:53986317-53986336 | None:intergenic | 35.0% | |
| GGATGTGTTCTTGACAATAA+AGG | - | chr5_4:53986345-53986364 | Msa0857680:CDS | 35.0% | |
| AGTTGTCTTAAATCGCTCTA+AGG | - | chr5_4:53986395-53986414 | Msa0857680:CDS | 35.0% | |
| ! | CTTCAATGCATCTGAAGTTA+TGG | - | chr5_4:53986629-53986648 | Msa0857680:CDS | 35.0% |
| ! | TCAATGCATCTGAAGTTATG+GGG | - | chr5_4:53986631-53986650 | Msa0857680:CDS | 35.0% |
| ATGGGGATAAAAAAGAAGGA+TGG | - | chr5_4:53986648-53986667 | Msa0857680:CDS | 35.0% | |
| TTTCTCTCTAGACAACTCTT+AGG | + | chr5_4:53986696-53986715 | None:intergenic | 35.0% | |
| ATAATTGGAATTGGCATGGT+GGG | + | chr5_4:53986774-53986793 | None:intergenic | 35.0% | |
| TATAATTGGAATTGGCATGG+TGG | + | chr5_4:53986775-53986794 | None:intergenic | 35.0% | |
| CTGTATAATTGGAATTGGCA+TGG | + | chr5_4:53986778-53986797 | None:intergenic | 35.0% | |
| CATGCCAATTCCAATTATAC+AGG | - | chr5_4:53986776-53986795 | Msa0857680:CDS | 35.0% | |
| TGTCAAGATACACTAGCAAT+TGG | - | chr5_4:53986858-53986877 | Msa0857680:CDS | 35.0% | |
| CATAAACGATGATATGACTC+GGG | + | chr5_4:53985580-53985599 | None:intergenic | 35.0% | |
| GCATAAACGATGATATGACT+CGG | + | chr5_4:53985581-53985600 | None:intergenic | 35.0% | |
| CATATCATCGTTTATGCTTG+TGG | - | chr5_4:53985584-53985603 | Msa0857680:three_prime_UTR | 35.0% | |
| GAGTTGCAAAGTTGCATTTA+TGG | - | chr5_4:53985673-53985692 | Msa0857680:CDS | 35.0% | |
| ! | CATTTATGGTTTCGAGTATG+AGG | - | chr5_4:53985687-53985706 | Msa0857680:CDS | 35.0% |
| ! | AGGATGATTTTCTGAATGCT+TGG | - | chr5_4:53985707-53985726 | Msa0857680:CDS | 35.0% |
| ! | GGATGATTTTCTGAATGCTT+GGG | - | chr5_4:53985708-53985727 | Msa0857680:CDS | 35.0% |
| ! | CAAAAAGGAAAAATGGGCTT+CGG | - | chr5_4:53985789-53985808 | Msa0857680:intron | 35.0% |
| ! | AAAAATGGGCTTCGGTATAT+GGG | - | chr5_4:53985797-53985816 | Msa0857680:intron | 35.0% |
| ! | TAATTGTGTTGTTGTAGCAC+CGG | + | chr5_4:53985839-53985858 | None:intergenic | 35.0% |
| GCTTCATGTAAAGCCTTAAA+CGG | + | chr5_4:53985879-53985898 | None:intergenic | 35.0% | |
| GCTAGATGATATGCGATATA+AGG | - | chr5_4:53985942-53985961 | Msa0857680:CDS | 35.0% | |
| AGATGATATGCGATATAAGG+AGG | - | chr5_4:53985945-53985964 | Msa0857680:CDS | 35.0% | |
| TATTCAATGATGGCATCTTC+TGG | + | chr5_4:53985993-53986012 | None:intergenic | 35.0% | |
| GAATATGATGTGTGCTTGTT+TGG | - | chr5_4:53986141-53986160 | Msa0857680:CDS | 35.0% | |
| ATATGATGTGTGCTTGTTTG+GGG | - | chr5_4:53986143-53986162 | Msa0857680:CDS | 35.0% | |
| ACTTTGATCTTCAGAGTTGA+AGG | + | chr5_4:53986190-53986209 | None:intergenic | 35.0% | |
| GATTAAGTACTCGAATAGCA+TGG | + | chr5_4:53986260-53986279 | None:intergenic | 35.0% | |
| !! | CTCTTAAGGATGTATTTTGG+AGG | + | chr5_4:53986303-53986322 | None:intergenic | 35.0% |
| CATTCTTAGTCCATCTCTTA+AGG | + | chr5_4:53986317-53986336 | None:intergenic | 35.0% | |
| GGATGTGTTCTTGACAATAA+AGG | - | chr5_4:53986345-53986364 | Msa0857680:CDS | 35.0% | |
| AGTTGTCTTAAATCGCTCTA+AGG | - | chr5_4:53986395-53986414 | Msa0857680:CDS | 35.0% | |
| ! | CTTCAATGCATCTGAAGTTA+TGG | - | chr5_4:53986629-53986648 | Msa0857680:CDS | 35.0% |
| ! | TCAATGCATCTGAAGTTATG+GGG | - | chr5_4:53986631-53986650 | Msa0857680:CDS | 35.0% |
| ATGGGGATAAAAAAGAAGGA+TGG | - | chr5_4:53986648-53986667 | Msa0857680:CDS | 35.0% | |
| TTTCTCTCTAGACAACTCTT+AGG | + | chr5_4:53986696-53986715 | None:intergenic | 35.0% | |
| ATAATTGGAATTGGCATGGT+GGG | + | chr5_4:53986774-53986793 | None:intergenic | 35.0% | |
| TATAATTGGAATTGGCATGG+TGG | + | chr5_4:53986775-53986794 | None:intergenic | 35.0% | |
| CTGTATAATTGGAATTGGCA+TGG | + | chr5_4:53986778-53986797 | None:intergenic | 35.0% | |
| CATGCCAATTCCAATTATAC+AGG | - | chr5_4:53986776-53986795 | Msa0857680:CDS | 35.0% | |
| TGTCAAGATACACTAGCAAT+TGG | - | chr5_4:53986858-53986877 | Msa0857680:CDS | 35.0% | |
| AACAGATCAAGATCCTGCAA+TGG | - | chr5_4:53985531-53985550 | Msa0857680:three_prime_UTR | 40.0% | |
| AATGGCAAAGGCAATTTCAG+AGG | - | chr5_4:53985549-53985568 | Msa0857680:three_prime_UTR | 40.0% | |
| ! | GAAAAATGGGCTTCGGTATA+TGG | - | chr5_4:53985796-53985815 | Msa0857680:intron | 40.0% |
| ! | AGAGCTTTAATGGCCGTTTA+AGG | - | chr5_4:53985863-53985882 | Msa0857680:CDS | 40.0% |
| TGCGGTAGCAATATCATGTA+AGG | - | chr5_4:53986431-53986450 | Msa0857680:CDS | 40.0% | |
| CCTTGCTCTACCTGTATAAT+TGG | + | chr5_4:53986789-53986808 | None:intergenic | 40.0% | |
| CCAATTATACAGGTAGAGCA+AGG | - | chr5_4:53986786-53986805 | Msa0857680:CDS | 40.0% | |
| TTCAGAGATAACGAATGCAG+AGG | - | chr5_4:53987044-53987063 | Msa0857680:CDS | 40.0% | |
| AACAGATCAAGATCCTGCAA+TGG | - | chr5_4:53985531-53985550 | Msa0857680:three_prime_UTR | 40.0% | |
| AATGGCAAAGGCAATTTCAG+AGG | - | chr5_4:53985549-53985568 | Msa0857680:three_prime_UTR | 40.0% | |
| ! | GAAAAATGGGCTTCGGTATA+TGG | - | chr5_4:53985796-53985815 | Msa0857680:intron | 40.0% |
| ! | AGAGCTTTAATGGCCGTTTA+AGG | - | chr5_4:53985863-53985882 | Msa0857680:CDS | 40.0% |
| TGCGGTAGCAATATCATGTA+AGG | - | chr5_4:53986431-53986450 | Msa0857680:CDS | 40.0% | |
| CCTTGCTCTACCTGTATAAT+TGG | + | chr5_4:53986789-53986808 | None:intergenic | 40.0% | |
| CCAATTATACAGGTAGAGCA+AGG | - | chr5_4:53986786-53986805 | Msa0857680:CDS | 40.0% | |
| TTCAGAGATAACGAATGCAG+AGG | - | chr5_4:53987044-53987063 | Msa0857680:CDS | 40.0% | |
| TCAAGATCCTGCAATGGCAA+AGG | - | chr5_4:53985537-53985556 | Msa0857680:three_prime_UTR | 45.0% | |
| GAAATTGCCTTTGCCATTGC+AGG | + | chr5_4:53985547-53985566 | None:intergenic | 45.0% | |
| TGGACTAAGAATGCTCGAAG+TGG | - | chr5_4:53986324-53986343 | Msa0857680:CDS | 45.0% | |
| TAAGGATTTGTGTCGCACTG+CGG | - | chr5_4:53986413-53986432 | Msa0857680:CDS | 45.0% | |
| TCCATACAGAGTGCAGATCA+TGG | - | chr5_4:53986543-53986562 | Msa0857680:CDS | 45.0% | |
| ACCATGATCTGCACTCTGTA+TGG | + | chr5_4:53986547-53986566 | None:intergenic | 45.0% | |
| AAGAAGGATGGTGTATCCAG+AGG | - | chr5_4:53986660-53986679 | Msa0857680:CDS | 45.0% | |
| GATGGTGTATCCAGAGGAAA+AGG | - | chr5_4:53986666-53986685 | Msa0857680:CDS | 45.0% | |
| ! | CTTAGGTCTACCTTTTCCTC+TGG | + | chr5_4:53986679-53986698 | None:intergenic | 45.0% |
| TCAAGATCCTGCAATGGCAA+AGG | - | chr5_4:53985537-53985556 | Msa0857680:three_prime_UTR | 45.0% | |
| GAAATTGCCTTTGCCATTGC+AGG | + | chr5_4:53985547-53985566 | None:intergenic | 45.0% | |
| TGGACTAAGAATGCTCGAAG+TGG | - | chr5_4:53986324-53986343 | Msa0857680:CDS | 45.0% | |
| TAAGGATTTGTGTCGCACTG+CGG | - | chr5_4:53986413-53986432 | Msa0857680:CDS | 45.0% | |
| TCCATACAGAGTGCAGATCA+TGG | - | chr5_4:53986543-53986562 | Msa0857680:CDS | 45.0% | |
| ACCATGATCTGCACTCTGTA+TGG | + | chr5_4:53986547-53986566 | None:intergenic | 45.0% | |
| AAGAAGGATGGTGTATCCAG+AGG | - | chr5_4:53986660-53986679 | Msa0857680:CDS | 45.0% | |
| GATGGTGTATCCAGAGGAAA+AGG | - | chr5_4:53986666-53986685 | Msa0857680:CDS | 45.0% | |
| ! | CTTAGGTCTACCTTTTCCTC+TGG | + | chr5_4:53986679-53986698 | None:intergenic | 45.0% |
| ! | TGTGCTTGTTTGGGGCTATG+AGG | - | chr5_4:53986151-53986170 | Msa0857680:CDS | 50.0% |
| CTCGAATAGCATGGCAGCAA+AGG | + | chr5_4:53986251-53986270 | None:intergenic | 50.0% | |
| ! | TGTGCTTGTTTGGGGCTATG+AGG | - | chr5_4:53986151-53986170 | Msa0857680:CDS | 50.0% |
| CTCGAATAGCATGGCAGCAA+AGG | + | chr5_4:53986251-53986270 | None:intergenic | 50.0% | |
| !!! | GGGCGACACACTTTTTCAGC+CGG | - | chr5_4:53985817-53985836 | Msa0857680:intron | 55.0% |
| !!! | GGGCGACACACTTTTTCAGC+CGG | - | chr5_4:53985817-53985836 | Msa0857680:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 53985520 | 53987233 | 53985520 | ID=Msa0857680;Name=Msa0857680 |
| chr5_4 | mRNA | 53985520 | 53987233 | 53985520 | ID=Msa0857680-mRNA-1;Parent=Msa0857680;Name=Msa0857680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.5|1|1|1|2|108|496 |
| chr5_4 | exon | 53985520 | 53985741 | 53985520 | ID=Msa0857680-mRNA-1:exon:16724;Parent=Msa0857680-mRNA-1 |
| chr5_4 | exon | 53985857 | 53987233 | 53985857 | ID=Msa0857680-mRNA-1:exon:16723;Parent=Msa0857680-mRNA-1 |
| chr5_4 | CDS | 53985857 | 53987233 | 53985857 | ID=Msa0857680-mRNA-1:cds;Parent=Msa0857680-mRNA-1 |
| chr5_4 | CDS | 53985628 | 53985741 | 53985628 | ID=Msa0857680-mRNA-1:cds;Parent=Msa0857680-mRNA-1 |
| chr5_4 | three_prime_UTR | 53985520 | 53985627 | 53985520 | ID=Msa0857680-mRNA-1:three_prime_utr;Parent=Msa0857680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
