Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783120 | sp|Q58VT1|PUN1_CAPFR | 40.000 | 130 | 69 | 2 | 3 | 123 | 10 | 139 | 1.08e-19 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783120 | G7K7H1 | 53.061 | 490 | 88 | 8 | 1 | 399 | 1 | 439 | 2.33e-149 | 439 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0783120 | 0.802877 | 4.554952e-49 | -8.615850e-47 |
| Msa0631700 | Msa0783120 | 0.810361 | 1.197629e-50 | -8.615850e-47 |
| Msa0633940 | Msa0783120 | 0.807603 | 4.662086e-50 | -8.615850e-47 |
| Msa0633970 | Msa0783120 | 0.813909 | 2.016375e-51 | -8.615850e-47 |
| Msa0741360 | Msa0783120 | 0.816163 | 6.372387e-52 | -8.615850e-47 |
| Msa0783120 | Msa0814160 | 0.801920 | 7.170087e-49 | -8.615850e-47 |
| Msa0783120 | Msa1006030 | 0.808020 | 3.802910e-50 | -8.615850e-47 |
| Msa0783120 | Msa1022510 | 0.804275 | 2.336087e-49 | -8.615850e-47 |
| Msa0783120 | Msa1048350 | 0.819091 | 1.393315e-52 | -8.615850e-47 |
| Msa0783120 | Msa1106680 | 0.810245 | 1.268506e-50 | -8.615850e-47 |
| Msa0783120 | Msa1147030 | 0.826748 | 2.288256e-54 | -8.615850e-47 |
| Msa0783120 | Msa1170340 | 0.812716 | 3.684909e-51 | -8.615850e-47 |
| Msa0374040 | Msa0783120 | 0.821584 | 3.735537e-53 | -8.615850e-47 |
| Msa0414480 | Msa0783120 | 0.814986 | 1.165194e-51 | -8.615850e-47 |
| Msa0423220 | Msa0783120 | 0.800284 | 1.548855e-48 | -8.615850e-47 |
| Msa0444250 | Msa0783120 | 0.810619 | 1.053420e-50 | -8.615850e-47 |
| Msa0464310 | Msa0783120 | 0.803591 | 3.240750e-49 | -8.615850e-47 |
| Msa0515130 | Msa0783120 | 0.822136 | 2.784184e-53 | -8.615850e-47 |
| Msa0535570 | Msa0783120 | 0.816624 | 5.023824e-52 | -8.615850e-47 |
| Msa0591490 | Msa0783120 | 0.807111 | 5.930328e-50 | -8.615850e-47 |
| Msa0593870 | Msa0783120 | 0.815226 | 1.030552e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783120 | MtrunA17_Chr5g0438681 | 53.061 | 490 | 88 | 8 | 1 | 399 | 1 | 439 | 4.48e-153 | 439 |
| Msa0783120 | MtrunA17_Chr8g0376891 | 42.685 | 499 | 133 | 8 | 1 | 399 | 1 | 446 | 2.02e-109 | 328 |
| Msa0783120 | MtrunA17_Chr5g0438701 | 59.873 | 314 | 32 | 3 | 1 | 220 | 1 | 314 | 4.25e-108 | 325 |
| Msa0783120 | MtrunA17_Chr5g0438701 | 43.333 | 270 | 122 | 9 | 128 | 392 | 190 | 433 | 1.81e-49 | 173 |
| Msa0783120 | MtrunA17_Chr8g0376901 | 80.315 | 127 | 25 | 0 | 1 | 127 | 1 | 127 | 1.19e-65 | 215 |
| Msa0783120 | MtrunA17_Chr8g0376901 | 66.250 | 80 | 26 | 1 | 311 | 390 | 359 | 437 | 1.99e-29 | 118 |
| Msa0783120 | MtrunA17_Chr8g0376901 | 52.066 | 121 | 26 | 1 | 128 | 216 | 193 | 313 | 2.17e-26 | 110 |
| Msa0783120 | MtrunA17_Chr8g0376911 | 65.625 | 128 | 43 | 1 | 1 | 127 | 1 | 128 | 2.16e-49 | 172 |
| Msa0783120 | MtrunA17_Chr8g0376911 | 64.000 | 75 | 26 | 1 | 316 | 390 | 363 | 436 | 2.05e-25 | 107 |
| Msa0783120 | MtrunA17_Chr5g0438721 | 82.432 | 74 | 13 | 0 | 57 | 130 | 7 | 80 | 1.32e-36 | 130 |
| Msa0783120 | MtrunA17_Chr7g0270681 | 72.840 | 81 | 22 | 0 | 41 | 121 | 5 | 85 | 1.07e-35 | 126 |
| Msa0783120 | MtrunA17_Chr5g0438711 | 64.865 | 74 | 25 | 1 | 323 | 396 | 1 | 73 | 9.86e-31 | 112 |
| Msa0783120 | MtrunA17_Chr3g0123061 | 42.276 | 123 | 70 | 1 | 1 | 122 | 3 | 125 | 2.52e-25 | 106 |
| Msa0783120 | MtrunA17_Chr3g0123061 | 53.125 | 64 | 29 | 1 | 317 | 380 | 349 | 411 | 3.57e-14 | 73.6 |
| Msa0783120 | MtrunA17_Chr1g0199561 | 38.017 | 121 | 74 | 1 | 1 | 120 | 1 | 121 | 3.34e-19 | 89.0 |
| Msa0783120 | MtrunA17_Chr2g0278481 | 51.765 | 85 | 35 | 2 | 303 | 387 | 375 | 453 | 1.82e-18 | 87.0 |
| Msa0783120 | MtrunA17_Chr2g0278481 | 37.500 | 136 | 84 | 1 | 1 | 135 | 15 | 150 | 1.59e-17 | 84.0 |
| Msa0783120 | MtrunA17_Chr8g0361771 | 38.017 | 121 | 74 | 1 | 1 | 120 | 1 | 121 | 1.82e-18 | 87.0 |
| Msa0783120 | MtrunA17_Chr8g0361781 | 35.537 | 121 | 77 | 1 | 1 | 120 | 1 | 121 | 7.39e-16 | 79.0 |
| Msa0783120 | MtrunA17_Chr6g0467451 | 72.500 | 40 | 11 | 0 | 276 | 315 | 1 | 40 | 1.38e-11 | 59.3 |
| Msa0783120 | MtrunA17_Chr2g0326461 | 70.000 | 40 | 8 | 1 | 276 | 315 | 1 | 36 | 3.49e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783120 | AT3G26040.1 | 36.957 | 138 | 84 | 1 | 1 | 135 | 1 | 138 | 4.61e-23 | 100 |
| Msa0783120 | AT3G26040.1 | 52.000 | 75 | 35 | 1 | 317 | 391 | 363 | 436 | 7.44e-17 | 82.4 |
| Msa0783120 | AT5G23970.1 | 38.462 | 117 | 67 | 2 | 1 | 117 | 1 | 112 | 2.36e-18 | 86.7 |
| Msa0783120 | AT5G23970.1 | 50.000 | 72 | 34 | 1 | 316 | 387 | 355 | 424 | 1.34e-16 | 81.6 |
| Msa0783120 | AT1G24420.2 | 49.315 | 73 | 37 | 0 | 315 | 387 | 360 | 432 | 1.42e-17 | 84.7 |
| Msa0783120 | AT1G24420.1 | 49.315 | 73 | 37 | 0 | 315 | 387 | 360 | 432 | 1.42e-17 | 84.7 |
| Msa0783120 | AT1G24430.1 | 50.704 | 71 | 34 | 1 | 317 | 387 | 359 | 428 | 1.61e-17 | 84.3 |
| Msa0783120 | AT1G24430.1 | 32.609 | 138 | 90 | 3 | 1 | 135 | 3 | 140 | 3.99e-14 | 73.9 |
| Msa0783120 | AT4G15390.1 | 36.134 | 119 | 74 | 2 | 1 | 118 | 6 | 123 | 1.34e-16 | 81.6 |
| Msa0783120 | AT4G15390.1 | 41.667 | 72 | 42 | 0 | 316 | 387 | 371 | 442 | 2.68e-14 | 74.7 |
| Msa0783120 | AT4G15390.2 | 36.134 | 119 | 74 | 2 | 1 | 118 | 6 | 123 | 1.34e-16 | 81.6 |
| Msa0783120 | AT4G15390.2 | 41.667 | 72 | 42 | 0 | 316 | 387 | 371 | 442 | 2.68e-14 | 74.7 |
| Msa0783120 | AT3G30280.1 | 35.294 | 119 | 75 | 2 | 1 | 118 | 4 | 121 | 1.01e-15 | 79.0 |
| Msa0783120 | AT3G30280.1 | 40.278 | 72 | 43 | 0 | 316 | 387 | 368 | 439 | 1.97e-14 | 75.1 |
| Msa0783120 | AT5G47980.1 | 35.461 | 141 | 82 | 5 | 1 | 135 | 3 | 140 | 4.70e-15 | 77.0 |
| Msa0783120 | AT5G47980.1 | 46.575 | 73 | 37 | 1 | 317 | 387 | 367 | 439 | 7.82e-13 | 70.1 |
| Msa0783120 | AT4G15400.1 | 45.946 | 74 | 38 | 1 | 316 | 387 | 358 | 431 | 5.14e-13 | 70.5 |
| Msa0783120 | AT5G47950.1 | 40.845 | 71 | 42 | 0 | 317 | 387 | 352 | 422 | 1.49e-12 | 69.3 |
| Msa0783120 | AT5G47950.1 | 30.252 | 119 | 81 | 2 | 1 | 118 | 4 | 121 | 3.08e-12 | 68.2 |
Find 92 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGATATATGAAACGGATTT+TGG | 0.079089 | 5_2:+66854962 | Msa0783120:CDS |
| AAAACAATGTGGAGTTTAAA+AGG | 0.191415 | 5_2:+66852870 | Msa0783120:CDS |
| CCCTTGGTCATTACATTCTA+TGG | 0.230366 | 5_2:-66852470 | None:intergenic |
| AGGGGTTTGCTCCTGGCTTA+TGG | 0.246037 | 5_2:-66853430 | None:intergenic |
| CTTTGCCAGGGGTTTGCTCC+TGG | 0.271619 | 5_2:-66853437 | None:intergenic |
| AGGGGTTACTGCACTTTGCC+AGG | 0.281749 | 5_2:-66853450 | None:intergenic |
| ATGTTGTCTATGAAAGAAAA+TGG | 0.289078 | 5_2:-66852298 | None:intergenic |
| CCAAAATCCGTTTCATATAT+CGG | 0.315285 | 5_2:-66854962 | None:intergenic |
| ACAATGGAAAGAAATGGATT+TGG | 0.327095 | 5_2:+66852588 | Msa0783120:CDS |
| CTCTCTTTAACACCATTTCT+AGG | 0.329160 | 5_2:-66852847 | None:intergenic |
| GGAAATGGAACTAGAAGATT+TGG | 0.332047 | 5_2:+66853141 | Msa0783120:CDS |
| TCTTTCCATTGTAATTCATC+AGG | 0.347159 | 5_2:-66852577 | None:intergenic |
| TTTGATCTCTACTTCCGTTT+GGG | 0.352047 | 5_2:-66852360 | None:intergenic |
| CAATGGAAAGAAATGGATTT+GGG | 0.368117 | 5_2:+66852589 | Msa0783120:CDS |
| TTGGCAAATGGACGTTTGCC+AGG | 0.379256 | 5_2:-66854863 | None:intergenic |
| TGAGAAGGAGTTGGTGATGA+AGG | 0.383816 | 5_2:-66852262 | None:intergenic |
| GGCAAATTGCAATTACAAAC+TGG | 0.389806 | 5_2:+66853406 | Msa0783120:CDS |
| CTTGTAGTGGTAGTTGGTGT+AGG | 0.390729 | 5_2:+66854936 | Msa0783120:CDS |
| TTTAGATAAAAGTTGAGATA+AGG | 0.392208 | 5_2:-66852410 | None:intergenic |
| AACACCATTTCTAGGAAGAT+AGG | 0.392358 | 5_2:-66852839 | None:intergenic |
| TGAAATGATCAAGTCTCTTA+AGG | 0.392506 | 5_2:+66852907 | Msa0783120:CDS |
| TTTACTGATGATTGTGCTCT+TGG | 0.398857 | 5_2:+66854833 | Msa0783120:CDS |
| TCAACATGTTGAACATTGTC+TGG | 0.404597 | 5_2:-66855157 | None:intergenic |
| GATGACAAATAAGAAGGAAA+TGG | 0.408625 | 5_2:+66853126 | Msa0783120:CDS |
| CAATTTGCCAGGGGTTTCCC+TGG | 0.409346 | 5_2:-66853392 | None:intergenic |
| TGAATTACAATGGAAAGAAA+TGG | 0.409552 | 5_2:+66852582 | Msa0783120:CDS |
| GTTATGCCAGGGTTTGTGCC+AGG | 0.413114 | 5_2:+66854757 | Msa0783120:CDS |
| TTTACCAGGGATTCTGCCCC+TGG | 0.419842 | 5_2:+66854898 | Msa0783120:CDS |
| TTTGCCTATCTTCCTAGAAA+TGG | 0.425291 | 5_2:+66852835 | Msa0783120:CDS |
| CTCCTGGCAAAATGCGCTCC+TGG | 0.431669 | 5_2:-66854775 | None:intergenic |
| CCTGCCAGGGGTTTAGCTCC+TGG | 0.432467 | 5_2:-66854791 | None:intergenic |
| AGTTGGTGATGAAGGTTTGA+TGG | 0.434934 | 5_2:-66852254 | None:intergenic |
| GGGGTTACTGCACTTTGCCA+GGG | 0.444221 | 5_2:-66853449 | None:intergenic |
| AAACAATGTGGAGTTTAAAA+GGG | 0.448288 | 5_2:+66852871 | Msa0783120:CDS |
| AAATAAATTAATAGTTCTGA+TGG | 0.450984 | 5_2:+66855030 | Msa0783120:CDS |
| TCATCGCAAATTGTCCTGCC+AGG | 0.453072 | 5_2:-66854805 | None:intergenic |
| ATATTTCTTGTAGTGGTAGT+TGG | 0.453867 | 5_2:+66854930 | Msa0783120:CDS |
| AAAGTGTAGGGAACATACTT+TGG | 0.455506 | 5_2:+66853092 | Msa0783120:CDS |
| GTTTGTAATTGCAATTTGCC+AGG | 0.458528 | 5_2:-66853403 | None:intergenic |
| TTTGCCAGGGGCAGAATCCC+TGG | 0.460916 | 5_2:-66854902 | None:intergenic |
| GGTTTCCCTGGCATTACTCC+TGG | 0.464541 | 5_2:-66853380 | None:intergenic |
| AAGAAAATGGATAAAGTTTG+AGG | 0.475047 | 5_2:-66852285 | None:intergenic |
| ATAAGCCAGGAGCAAACCCC+TGG | 0.486430 | 5_2:+66853432 | Msa0783120:CDS |
| TTACTCCTGGCAAATTTGCC+AGG | 0.488435 | 5_2:-66853367 | None:intergenic |
| TGTGGATCTTCGCAGAAGAA+TGG | 0.488711 | 5_2:+66853051 | Msa0783120:CDS |
| TGAAAGTAATTCTATTTCCA+TGG | 0.489093 | 5_2:-66852224 | None:intergenic |
| CAGCTCCTGGCAAATTTGCC+AGG | 0.494805 | 5_2:+66853362 | Msa0783120:CDS |
| GTTTGAAGCAATTGTGATCA+TGG | 0.499465 | 5_2:+66855072 | Msa0783120:CDS |
| AAGATAGGCAAATCCCTTTG+TGG | 0.504096 | 5_2:-66852824 | None:intergenic |
| GAGTTGAGAGAGCTCAAGAA+TGG | 0.506916 | 5_2:-66855189 | None:intergenic |
| TGCGCTCCTGGCACAAACCC+TGG | 0.508706 | 5_2:-66854763 | None:intergenic |
| TGAAGAACAACAAGAAGTAC+TGG | 0.510593 | 5_2:-66855008 | None:intergenic |
| TGGCAAATGGACGTTTGCCA+GGG | 0.521307 | 5_2:-66854862 | None:intergenic |
| TACAAACTGGACCATAAGCC+AGG | 0.521680 | 5_2:+66853419 | Msa0783120:CDS |
| GGATAAAGTTTGAGGTGAGA+AGG | 0.521963 | 5_2:-66852277 | None:intergenic |
| GTCTATGATGACAAATAAGA+AGG | 0.522890 | 5_2:+66853120 | Msa0783120:CDS |
| CATCGCAAATTGTCCTGCCA+GGG | 0.524146 | 5_2:-66854804 | None:intergenic |
| AGTTTGAGGTGAGAAGGAGT+TGG | 0.524419 | 5_2:-66852271 | None:intergenic |
| TAGGTTTCCGATATATGAAA+CGG | 0.526485 | 5_2:+66854955 | Msa0783120:CDS |
| TGTGCTCTTGGCAAAACCCC+TGG | 0.528101 | 5_2:+66854845 | Msa0783120:CDS |
| ATGCCAGGAGCATCAGCTCC+TGG | 0.533308 | 5_2:+66853349 | Msa0783120:intron |
| AAAGTAATGGCAAATAGTTA+CGG | 0.535719 | 5_2:-66852327 | None:intergenic |
| CTTTCCATTGTAATTCATCA+GGG | 0.539048 | 5_2:-66852576 | None:intergenic |
| CCATAGAATGTAATGACCAA+GGG | 0.543418 | 5_2:+66852470 | Msa0783120:CDS |
| AATTTGCCAGGAGTAATGCC+AGG | 0.547603 | 5_2:+66853374 | Msa0783120:CDS |
| TTGTAATTCATCAGGGAACA+TGG | 0.549290 | 5_2:-66852569 | None:intergenic |
| AAATGCAATATTTCTTGTAG+TGG | 0.550947 | 5_2:+66854923 | Msa0783120:CDS |
| GGGTTGTAAAAGTAAAGTAA+TGG | 0.551494 | 5_2:-66852340 | None:intergenic |
| ATGGATACAAGAGATGGAGA+TGG | 0.554728 | 5_2:+66855049 | Msa0783120:CDS |
| GGGTTACTGCACTTTGCCAG+GGG | 0.556947 | 5_2:-66853448 | None:intergenic |
| GATCAAGTCTCTTAAGGCAA+TGG | 0.558721 | 5_2:+66852913 | Msa0783120:CDS |
| GAAGTACTGGTGACCCATGT+TGG | 0.571663 | 5_2:-66854995 | None:intergenic |
| CCAGGAGCTAAACCCCTGGC+AGG | 0.574636 | 5_2:+66854791 | Msa0783120:CDS |
| GCAGGACAATTTGCGATGAG+CGG | 0.579535 | 5_2:+66854809 | Msa0783120:CDS |
| TTGGGTGGGGAAAACCAACA+TGG | 0.579583 | 5_2:+66854981 | Msa0783120:CDS |
| TGGATACAAGAGATGGAGAT+GGG | 0.587442 | 5_2:+66855050 | Msa0783120:CDS |
| AACATTGTCTGGATTAAGAG+AGG | 0.587861 | 5_2:-66855146 | None:intergenic |
| TGGCAAACGTCCATTTGCCA+AGG | 0.590075 | 5_2:+66854865 | Msa0783120:CDS |
| ATCGCAAATTGTCCTGCCAG+GGG | 0.599706 | 5_2:-66854803 | None:intergenic |
| GGCAAATGGACGTTTGCCAG+GGG | 0.605953 | 5_2:-66854861 | None:intergenic |
| ACCATAGAATGTAATGACCA+AGG | 0.614189 | 5_2:+66852469 | Msa0783120:CDS |
| TTTGCCAGGAGCTAAACCCC+TGG | 0.614720 | 5_2:+66854787 | Msa0783120:CDS |
| TTTGTAATTGCAATTTGCCA+GGG | 0.616575 | 5_2:-66853402 | None:intergenic |
| GTTCTGATGGATACAAGAGA+TGG | 0.626941 | 5_2:+66855043 | Msa0783120:CDS |
| TTGTAATTGCAATTTGCCAG+GGG | 0.628207 | 5_2:-66853401 | None:intergenic |
| TGGGTGGGGAAAACCAACAT+GGG | 0.633850 | 5_2:+66854982 | Msa0783120:CDS |
| AGTAATGCCAGGGAAACCCC+TGG | 0.634189 | 5_2:+66853385 | Msa0783120:CDS |
| TGTTCCCTGATGAATTACAA+TGG | 0.634829 | 5_2:+66852572 | Msa0783120:CDS |
| CACAATCATGCAAAATGACG+CGG | 0.654154 | 5_2:-66853032 | None:intergenic |
| ATTTGCCAGGAGTAATGCCA+GGG | 0.669881 | 5_2:+66853375 | Msa0783120:CDS |
| GTTAAAGAGAGAAAACAATG+TGG | 0.678799 | 5_2:+66852859 | Msa0783120:CDS |
| CATAGAATGTAATGACCAAG+GGG | 0.684767 | 5_2:+66852471 | Msa0783120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAGACAAATTATTATA+AGG | + | chr5_2:66854406-66854425 | Msa0783120:intron | 10.0% |
| !! | TTGATTATGTACAAAATAAA+AGG | + | chr5_2:66854043-66854062 | Msa0783120:intron | 15.0% |
| !!! | ACCACATTTATTTATTTTTT+CGG | - | chr5_2:66854095-66854114 | None:intergenic | 15.0% |
| !! | ATAAAATAAAAGATCTTATG+AGG | - | chr5_2:66854230-66854249 | None:intergenic | 15.0% |
| !!! | AAATAAATTAATAGTTCTGA+TGG | + | chr5_2:66855030-66855049 | Msa0783120:CDS | 15.0% |
| !! | TTTAGATAAAAGTTGAGATA+AGG | - | chr5_2:66852413-66852432 | None:intergenic | 20.0% |
| !! | AAAGATAAAAAGCAAACTTT+CGG | + | chr5_2:66852510-66852529 | Msa0783120:CDS | 20.0% |
| !! | TTATAGCCATTCAAATAAAT+TGG | + | chr5_2:66852620-66852639 | Msa0783120:intron | 20.0% |
| !! | TGTAAACCAATTTATTTGAA+TGG | - | chr5_2:66852629-66852648 | None:intergenic | 20.0% |
| !!! | AAATAAATTGGTTTACATGT+GGG | + | chr5_2:66852632-66852651 | Msa0783120:intron | 20.0% |
| !! | ATCATTCATGAAATTGAAAA+TGG | - | chr5_2:66852714-66852733 | None:intergenic | 20.0% |
| !!! | TTTTCAATTTCATGAATGAT+TGG | + | chr5_2:66852714-66852733 | Msa0783120:intron | 20.0% |
| !! | TTTCAATTTCATGAATGATT+GGG | + | chr5_2:66852715-66852734 | Msa0783120:intron | 20.0% |
| !! | CAAAATTATTTAGAGACAAA+GGG | + | chr5_2:66853207-66853226 | Msa0783120:intron | 20.0% |
| !!! | TCTTCTATTTTCTAATTTTG+AGG | + | chr5_2:66853828-66853847 | Msa0783120:intron | 20.0% |
| !!! | TTATTGTGTTGATTTTTTTC+TGG | + | chr5_2:66854069-66854088 | Msa0783120:intron | 20.0% |
| !!! | AGCATAACAAATCTATTTTT+TGG | - | chr5_2:66854157-66854176 | None:intergenic | 20.0% |
| !! | TCAAAATAAAAGATCTTATG+AGG | - | chr5_2:66854197-66854216 | None:intergenic | 20.0% |
| !! | TTACTCTTGATATAAAACTT+TGG | + | chr5_2:66854304-66854323 | Msa0783120:intron | 20.0% |
| !! | GTAATTAGAAATGAGAAATA+AGG | + | chr5_2:66854332-66854351 | Msa0783120:intron | 20.0% |
| !! | TTACTCTTGATATAAAACTT+TGG | + | chr5_2:66854304-66854323 | Msa0783120:intron | 20.0% |
| ! | AAGAAAATGGATAAAGTTTG+AGG | - | chr5_2:66852288-66852307 | None:intergenic | 25.0% |
| ! | ATGTTGTCTATGAAAGAAAA+TGG | - | chr5_2:66852301-66852320 | None:intergenic | 25.0% |
| ! | AAAGTAATGGCAAATAGTTA+CGG | - | chr5_2:66852330-66852349 | None:intergenic | 25.0% |
| !! | TCTAAATACTATCATTTTGC+TGG | + | chr5_2:66852427-66852446 | Msa0783120:CDS | 25.0% |
| ! | TGAATTACAATGGAAAGAAA+TGG | + | chr5_2:66852582-66852601 | Msa0783120:CDS | 25.0% |
| !! | CAAATAAATTGGTTTACATG+TGG | + | chr5_2:66852631-66852650 | Msa0783120:intron | 25.0% |
| !! | AATAAATTGGTTTACATGTG+GGG | + | chr5_2:66852633-66852652 | Msa0783120:intron | 25.0% |
| ! | AAAACAATGTGGAGTTTAAA+AGG | + | chr5_2:66852870-66852889 | Msa0783120:CDS | 25.0% |
| ! | AAACAATGTGGAGTTTAAAA+GGG | + | chr5_2:66852871-66852890 | Msa0783120:CDS | 25.0% |
| !! | CCTTTGTCTCTAAATAATTT+TGG | - | chr5_2:66853209-66853228 | None:intergenic | 25.0% |
| ! | CCAAAATTATTTAGAGACAA+AGG | + | chr5_2:66853206-66853225 | Msa0783120:intron | 25.0% |
| !!! | AATTTTTTATTCTCGAGTTG+AGG | - | chr5_2:66853281-66853300 | None:intergenic | 25.0% |
| !! | AAAATTTTCTAAGTGAGACA+GGG | - | chr5_2:66853772-66853791 | None:intergenic | 25.0% |
| ! | GCCGAAAAAATAAATAAATG+TGG | + | chr5_2:66854091-66854110 | Msa0783120:intron | 25.0% |
| !!! | TTTTTGGAACAGATCATATA+AGG | - | chr5_2:66854141-66854160 | None:intergenic | 25.0% |
| ! | AAATGCAATATTTCTTGTAG+TGG | + | chr5_2:66854923-66854942 | Msa0783120:CDS | 25.0% |
| GGGTTGTAAAAGTAAAGTAA+TGG | - | chr5_2:66852343-66852362 | None:intergenic | 30.0% | |
| !! | CTTTACTTTTACAACCCAAA+CGG | + | chr5_2:66852346-66852365 | Msa0783120:CDS | 30.0% |
| ! | AATACTATCATTTTGCTGGT+AGG | + | chr5_2:66852431-66852450 | Msa0783120:CDS | 30.0% |
| ! | ACAATTTTTCTGTGGGATTT+TGG | - | chr5_2:66852543-66852562 | None:intergenic | 30.0% |
| ! | GAGTTCAACAATTTTTCTGT+GGG | - | chr5_2:66852550-66852569 | None:intergenic | 30.0% |
| CTTTCCATTGTAATTCATCA+GGG | - | chr5_2:66852579-66852598 | None:intergenic | 30.0% | |
| TCTTTCCATTGTAATTCATC+AGG | - | chr5_2:66852580-66852599 | None:intergenic | 30.0% | |
| ! | ACAATGGAAAGAAATGGATT+TGG | + | chr5_2:66852588-66852607 | Msa0783120:CDS | 30.0% |
| ! | CAATGGAAAGAAATGGATTT+GGG | + | chr5_2:66852589-66852608 | Msa0783120:CDS | 30.0% |
| ! | ATAAATTGGTTTACATGTGG+GGG | + | chr5_2:66852634-66852653 | Msa0783120:intron | 30.0% |
| TGCATCAAGTAAACTAAATG+GGG | - | chr5_2:66852789-66852808 | None:intergenic | 30.0% | |
| CTGCATCAAGTAAACTAAAT+GGG | - | chr5_2:66852790-66852809 | None:intergenic | 30.0% | |
| ! | AGCAACAATTTTTCCACAAA+GGG | + | chr5_2:66852811-66852830 | Msa0783120:CDS | 30.0% |
| GTTAAAGAGAGAAAACAATG+TGG | + | chr5_2:66852859-66852878 | Msa0783120:CDS | 30.0% | |
| TGAAATGATCAAGTCTCTTA+AGG | + | chr5_2:66852907-66852926 | Msa0783120:CDS | 30.0% | |
| ATTACAACTTGTACACATGT+GGG | - | chr5_2:66852962-66852981 | None:intergenic | 30.0% | |
| AATTACAACTTGTACACATG+TGG | - | chr5_2:66852963-66852982 | None:intergenic | 30.0% | |
| TAAGCATGCAGTTTCAATAA+TGG | + | chr5_2:66852994-66853013 | Msa0783120:intron | 30.0% | |
| AAGCATGCAGTTTCAATAAT+GGG | + | chr5_2:66852995-66853014 | Msa0783120:intron | 30.0% | |
| GTCTATGATGACAAATAAGA+AGG | + | chr5_2:66853120-66853139 | Msa0783120:CDS | 30.0% | |
| GATGACAAATAAGAAGGAAA+TGG | + | chr5_2:66853126-66853145 | Msa0783120:CDS | 30.0% | |
| TTGGTCTGCAAAATAAAAGA+AGG | + | chr5_2:66853160-66853179 | Msa0783120:intron | 30.0% | |
| TGGTCTGCAAAATAAAAGAA+GGG | + | chr5_2:66853161-66853180 | Msa0783120:intron | 30.0% | |
| ATTATTTAGAGACAAAGGGA+AGG | + | chr5_2:66853211-66853230 | Msa0783120:intron | 30.0% | |
| TTTGTAATTGCAATTTGCCA+GGG | - | chr5_2:66853405-66853424 | None:intergenic | 30.0% | |
| !!! | TTACTGACGCCTTTTTTTTT+AGG | + | chr5_2:66853620-66853639 | Msa0783120:intron | 30.0% |
| GTTTCAATGAATGAATGGAA+CGG | - | chr5_2:66853747-66853766 | None:intergenic | 30.0% | |
| ! | AAATTTTCTAAGTGAGACAG+GGG | - | chr5_2:66853771-66853790 | None:intergenic | 30.0% |
| ! | GAAAATTTTCTAAGTGAGAC+AGG | - | chr5_2:66853773-66853792 | None:intergenic | 30.0% |
| CATGGTTGAAATGAGAAATA+AGG | + | chr5_2:66854281-66854300 | Msa0783120:intron | 30.0% | |
| ! | AGAAATATTGCATTTTGCCA+GGG | - | chr5_2:66854918-66854937 | None:intergenic | 30.0% |
| ! | AAGAAATATTGCATTTTGCC+AGG | - | chr5_2:66854919-66854938 | None:intergenic | 30.0% |
| ATATTTCTTGTAGTGGTAGT+TGG | + | chr5_2:66854930-66854949 | Msa0783120:CDS | 30.0% | |
| TAGGTTTCCGATATATGAAA+CGG | + | chr5_2:66854955-66854974 | Msa0783120:CDS | 30.0% | |
| CCAAAATCCGTTTCATATAT+CGG | - | chr5_2:66854965-66854984 | None:intergenic | 30.0% | |
| !! | CGATATATGAAACGGATTTT+GGG | + | chr5_2:66854963-66854982 | Msa0783120:CDS | 30.0% |
| TTTGATCTCTACTTCCGTTT+GGG | - | chr5_2:66852363-66852382 | None:intergenic | 35.0% | |
| ! | TTTTGATCTCTACTTCCGTT+TGG | - | chr5_2:66852364-66852383 | None:intergenic | 35.0% |
| ACCATAGAATGTAATGACCA+AGG | + | chr5_2:66852469-66852488 | Msa0783120:CDS | 35.0% | |
| CCATAGAATGTAATGACCAA+GGG | + | chr5_2:66852470-66852489 | Msa0783120:CDS | 35.0% | |
| CATAGAATGTAATGACCAAG+GGG | + | chr5_2:66852471-66852490 | Msa0783120:CDS | 35.0% | |
| ! | GGAGTTCAACAATTTTTCTG+TGG | - | chr5_2:66852551-66852570 | None:intergenic | 35.0% |
| TTGTAATTCATCAGGGAACA+TGG | - | chr5_2:66852572-66852591 | None:intergenic | 35.0% | |
| TGTTCCCTGATGAATTACAA+TGG | + | chr5_2:66852572-66852591 | Msa0783120:CDS | 35.0% | |
| CATTATCAACCAAAAGCTAG+CGG | + | chr5_2:66852739-66852758 | Msa0783120:intron | 35.0% | |
| CCTGCATCAAGTAAACTAAA+TGG | - | chr5_2:66852791-66852810 | None:intergenic | 35.0% | |
| ! | CCATTTAGTTTACTTGATGC+AGG | + | chr5_2:66852788-66852807 | Msa0783120:intron | 35.0% |
| ! | GAGCAACAATTTTTCCACAA+AGG | + | chr5_2:66852810-66852829 | Msa0783120:CDS | 35.0% |
| TTTGCCTATCTTCCTAGAAA+TGG | + | chr5_2:66852835-66852854 | Msa0783120:CDS | 35.0% | |
| ! | AACACCATTTCTAGGAAGAT+AGG | - | chr5_2:66852842-66852861 | None:intergenic | 35.0% |
| CTCTCTTTAACACCATTTCT+AGG | - | chr5_2:66852850-66852869 | None:intergenic | 35.0% | |
| GTGTACAAGTTGTAATTGCA+TGG | + | chr5_2:66852966-66852985 | Msa0783120:intron | 35.0% | |
| AGCATGCAGTTTCAATAATG+GGG | + | chr5_2:66852996-66853015 | Msa0783120:intron | 35.0% | |
| ! | CATTGCCTGAAAAAAGTGTA+GGG | + | chr5_2:66853080-66853099 | Msa0783120:CDS | 35.0% |
| !!! | ATGTTCCCTACACTTTTTTC+AGG | - | chr5_2:66853088-66853107 | None:intergenic | 35.0% |
| AAAGTGTAGGGAACATACTT+TGG | + | chr5_2:66853092-66853111 | Msa0783120:CDS | 35.0% | |
| GGAAATGGAACTAGAAGATT+TGG | + | chr5_2:66853141-66853160 | Msa0783120:CDS | 35.0% | |
| TTGTAATTGCAATTTGCCAG+GGG | - | chr5_2:66853404-66853423 | None:intergenic | 35.0% | |
| GTTTGTAATTGCAATTTGCC+AGG | - | chr5_2:66853406-66853425 | None:intergenic | 35.0% | |
| GGCAAATTGCAATTACAAAC+TGG | + | chr5_2:66853406-66853425 | Msa0783120:CDS | 35.0% | |
| GAGAAAGAAGAAATGAGAAG+AGG | - | chr5_2:66853795-66853814 | None:intergenic | 35.0% | |
| CTTATAGTAACCTGTCAAAG+AGG | - | chr5_2:66854014-66854033 | None:intergenic | 35.0% | |
| ! | AAATTCGTACTCATTTTGCC+AGG | + | chr5_2:66854612-66854631 | Msa0783120:intron | 35.0% |
| ! | AATTCGTACTCATTTTGCCA+GGG | + | chr5_2:66854613-66854632 | Msa0783120:intron | 35.0% |
| TTTACTGATGATTGTGCTCT+TGG | + | chr5_2:66854833-66854852 | Msa0783120:CDS | 35.0% | |
| TGGTAAAATGCAAAAAGCCT+TGG | - | chr5_2:66854885-66854904 | None:intergenic | 35.0% | |
| ! | AAGGCTTTTTGCATTTTACC+AGG | + | chr5_2:66854884-66854903 | Msa0783120:CDS | 35.0% |
| ! | AGGCTTTTTGCATTTTACCA+GGG | + | chr5_2:66854885-66854904 | Msa0783120:CDS | 35.0% |
| ! | GAAATATTGCATTTTGCCAG+GGG | - | chr5_2:66854917-66854936 | None:intergenic | 35.0% |
| !! | CCGATATATGAAACGGATTT+TGG | + | chr5_2:66854962-66854981 | Msa0783120:CDS | 35.0% |
| !! | TATATGAAACGGATTTTGGG+TGG | + | chr5_2:66854966-66854985 | Msa0783120:CDS | 35.0% |
| !! | ATATGAAACGGATTTTGGGT+GGG | + | chr5_2:66854967-66854986 | Msa0783120:CDS | 35.0% |
| ! | TGAAGAACAACAAGAAGTAC+TGG | - | chr5_2:66855011-66855030 | None:intergenic | 35.0% |
| ! | GTTTGAAGCAATTGTGATCA+TGG | + | chr5_2:66855072-66855091 | Msa0783120:CDS | 35.0% |
| AACATTGTCTGGATTAAGAG+AGG | - | chr5_2:66855149-66855168 | None:intergenic | 35.0% | |
| TCAACATGTTGAACATTGTC+TGG | - | chr5_2:66855160-66855179 | None:intergenic | 35.0% | |
| !! | AGTTGGTGATGAAGGTTTGA+TGG | - | chr5_2:66852257-66852276 | None:intergenic | 40.0% |
| ! | GGATAAAGTTTGAGGTGAGA+AGG | - | chr5_2:66852280-66852299 | None:intergenic | 40.0% |
| CCCTTGGTCATTACATTCTA+TGG | - | chr5_2:66852473-66852492 | None:intergenic | 40.0% | |
| TGAACAAAAACAACACCCCT+TGG | - | chr5_2:66852489-66852508 | None:intergenic | 40.0% | |
| !!! | CGCTAGCTTTTGGTTGATAA+TGG | - | chr5_2:66852741-66852760 | None:intergenic | 40.0% |
| !!! | TTTCATCTTCCGCTAGCTTT+TGG | - | chr5_2:66852751-66852770 | None:intergenic | 40.0% |
| AAGATAGGCAAATCCCTTTG+TGG | - | chr5_2:66852827-66852846 | None:intergenic | 40.0% | |
| GATCAAGTCTCTTAAGGCAA+TGG | + | chr5_2:66852913-66852932 | Msa0783120:CDS | 40.0% | |
| CACAATCATGCAAAATGACG+CGG | - | chr5_2:66853035-66853054 | None:intergenic | 40.0% | |
| !!! | ACACTTTTTTCAGGCAATGG+AGG | - | chr5_2:66853079-66853098 | None:intergenic | 40.0% |
| !!! | CCTACACTTTTTTCAGGCAA+TGG | - | chr5_2:66853082-66853101 | None:intergenic | 40.0% |
| ! | CCATTGCCTGAAAAAAGTGT+AGG | + | chr5_2:66853079-66853098 | Msa0783120:CDS | 40.0% |
| ! | AAGAAATCTTGCGTTTTGCC+AGG | + | chr5_2:66853321-66853340 | Msa0783120:intron | 40.0% |
| ! | AGAAATCTTGCGTTTTGCCA+GGG | + | chr5_2:66853322-66853341 | Msa0783120:intron | 40.0% |
| ! | AGTAACCCCTGGCAAATTTT+GGG | + | chr5_2:66853463-66853482 | Msa0783120:intron | 40.0% |
| AATTTGAGCCCCTAAAGTCA+AGG | + | chr5_2:66853503-66853522 | Msa0783120:intron | 40.0% | |
| ATTTGAGCCCCTAAAGTCAA+GGG | + | chr5_2:66853504-66853523 | Msa0783120:intron | 40.0% | |
| AGAGATTCCCTTGACTTTAG+GGG | - | chr5_2:66853514-66853533 | None:intergenic | 40.0% | |
| CAGAGATTCCCTTGACTTTA+GGG | - | chr5_2:66853515-66853534 | None:intergenic | 40.0% | |
| ! | TTCTGAAAAGTTGACATGCC+AGG | + | chr5_2:66853559-66853578 | Msa0783120:intron | 40.0% |
| TCTGAAAAGTTGACATGCCA+GGG | + | chr5_2:66853560-66853579 | Msa0783120:intron | 40.0% | |
| ! | GAAATTGTGCATTTTGCCAG+GGG | - | chr5_2:66853592-66853611 | None:intergenic | 40.0% |
| ! | CGAAATTGTGCATTTTGCCA+GGG | - | chr5_2:66853593-66853612 | None:intergenic | 40.0% |
| ! | ACGAAATTGTGCATTTTGCC+AGG | - | chr5_2:66853594-66853613 | None:intergenic | 40.0% |
| TGGCAAAATGCACAATTTCG+TGG | + | chr5_2:66853593-66853612 | Msa0783120:intron | 40.0% | |
| ! | GGGGTGTTTCAATGAATGAA+TGG | - | chr5_2:66853752-66853771 | None:intergenic | 40.0% |
| !! | GTTTGTTGTTCCTCTTTGAC+AGG | + | chr5_2:66854001-66854020 | Msa0783120:intron | 40.0% |
| ! | ATTCGTACTCATTTTGCCAG+GGG | + | chr5_2:66854614-66854633 | Msa0783120:intron | 40.0% |
| AAAATGTGTCACATGCATGC+AGG | - | chr5_2:66854730-66854749 | None:intergenic | 40.0% | |
| ATGCAAAAAGCCTTGGCAAA+TGG | - | chr5_2:66854878-66854897 | None:intergenic | 40.0% | |
| !! | TATGAAACGGATTTTGGGTG+GGG | + | chr5_2:66854968-66854987 | Msa0783120:CDS | 40.0% |
| ! | GTTCTGATGGATACAAGAGA+TGG | + | chr5_2:66855043-66855062 | Msa0783120:CDS | 40.0% |
| ATGGATACAAGAGATGGAGA+TGG | + | chr5_2:66855049-66855068 | Msa0783120:CDS | 40.0% | |
| TGGATACAAGAGATGGAGAT+GGG | + | chr5_2:66855050-66855069 | Msa0783120:CDS | 40.0% | |
| !! | TGAGAAGGAGTTGGTGATGA+AGG | - | chr5_2:66852265-66852284 | None:intergenic | 45.0% |
| ! | AGTTTGAGGTGAGAAGGAGT+TGG | - | chr5_2:66852274-66852293 | None:intergenic | 45.0% |
| TTGGTTTACATGTGGGGGAA+TGG | + | chr5_2:66852639-66852658 | Msa0783120:intron | 45.0% | |
| TACACATGTGGGAGAATGCA+TGG | - | chr5_2:66852951-66852970 | None:intergenic | 45.0% | |
| !! | CGCGTCATTTTGCATGATTG+TGG | + | chr5_2:66853033-66853052 | Msa0783120:CDS | 45.0% |
| TGTGGATCTTCGCAGAAGAA+TGG | + | chr5_2:66853051-66853070 | Msa0783120:CDS | 45.0% | |
| ! | TTTTGCCAGGGAATAATGCC+AGG | + | chr5_2:66853334-66853353 | Msa0783120:intron | 45.0% |
| TTACTCCTGGCAAATTTGCC+AGG | - | chr5_2:66853370-66853389 | None:intergenic | 45.0% | |
| AATTTGCCAGGAGTAATGCC+AGG | + | chr5_2:66853374-66853393 | Msa0783120:CDS | 45.0% | |
| ATTTGCCAGGAGTAATGCCA+GGG | + | chr5_2:66853375-66853394 | Msa0783120:CDS | 45.0% | |
| TACAAACTGGACCATAAGCC+AGG | + | chr5_2:66853419-66853438 | Msa0783120:CDS | 45.0% | |
| ! | CAGTAACCCCTGGCAAATTT+TGG | + | chr5_2:66853462-66853481 | Msa0783120:intron | 45.0% |
| GCAGAGATTCCCTTGACTTT+AGG | - | chr5_2:66853516-66853535 | None:intergenic | 45.0% | |
| CTGAAAAGTTGACATGCCAG+GGG | + | chr5_2:66853561-66853580 | Msa0783120:intron | 45.0% | |
| !!! | CGCCTTTTTTTTTAGGCCTG+CGG | + | chr5_2:66853627-66853646 | Msa0783120:intron | 45.0% |
| AGCCGCAGGCCTAAAAAAAA+AGG | - | chr5_2:66853632-66853651 | None:intergenic | 45.0% | |
| GGAGGCAGTGGAAATTACTT+TGG | - | chr5_2:66853959-66853978 | None:intergenic | 45.0% | |
| AATCCAAGAGCAAGCTTCAC+AGG | - | chr5_2:66853980-66853999 | None:intergenic | 45.0% | |
| ! | TCATTTTCAGCCCATTGCCA+GGG | - | chr5_2:66854657-66854676 | None:intergenic | 45.0% |
| ! | TGCATGTGACACATTTTGCC+AGG | + | chr5_2:66854733-66854752 | Msa0783120:intron | 45.0% |
| ! | GCATGTGACACATTTTGCCA+GGG | + | chr5_2:66854734-66854753 | Msa0783120:intron | 45.0% |
| ! | CATGTGACACATTTTGCCAG+GGG | + | chr5_2:66854735-66854754 | Msa0783120:intron | 45.0% |
| ! | CTTGTAGTGGTAGTTGGTGT+AGG | + | chr5_2:66854936-66854955 | Msa0783120:CDS | 45.0% |
| TCATGCAAAATGACGCGGTC+TGG | - | chr5_2:66853030-66853049 | None:intergenic | 50.0% | |
| ATGCTCCTGGCATTATTCCC+TGG | - | chr5_2:66853342-66853361 | None:intergenic | 50.0% | |
| ! | AACCCCTGGCAAATTTTGGG+CGG | + | chr5_2:66853466-66853485 | Msa0783120:intron | 50.0% |
| TTCCCGCCCAAAATTTGCCA+GGG | - | chr5_2:66853472-66853491 | None:intergenic | 50.0% | |
| TTTCCCGCCCAAAATTTGCC+AGG | - | chr5_2:66853473-66853492 | None:intergenic | 50.0% | |
| CAACACAATTGAGTAGCCGC+AGG | - | chr5_2:66853646-66853665 | None:intergenic | 50.0% | |
| CTGCGGCTACTCAATTGTGT+TGG | + | chr5_2:66853644-66853663 | Msa0783120:intron | 50.0% | |
| TGCATGTATGCTGCTGCTCA+TGG | + | chr5_2:66854263-66854282 | Msa0783120:intron | 50.0% | |
| TAAACCCCTGGCAATTTCCC+TGG | + | chr5_2:66854637-66854656 | Msa0783120:intron | 50.0% | |
| ATTGCCAGGGAAATTGCCAG+GGG | - | chr5_2:66854644-66854663 | None:intergenic | 50.0% | |
| CATTGCCAGGGAAATTGCCA+GGG | - | chr5_2:66854645-66854664 | None:intergenic | 50.0% | |
| CTGGCAATTTCCCTGGCAAT+GGG | + | chr5_2:66854644-66854663 | Msa0783120:intron | 50.0% | |
| !! | GTCATTTTCAGCCCATTGCC+AGG | - | chr5_2:66854658-66854677 | None:intergenic | 50.0% |
| TGATGTACTCTGGCACATGC+AGG | - | chr5_2:66854701-66854720 | None:intergenic | 50.0% | |
| TGCATGTGCCAGAGTACATC+AGG | + | chr5_2:66854700-66854719 | Msa0783120:intron | 50.0% | |
| CAGGCTTTCCTGATGTACTC+TGG | - | chr5_2:66854711-66854730 | None:intergenic | 50.0% | |
| ! | ATTTTGCCAGGGGTTATGCC+AGG | + | chr5_2:66854745-66854764 | Msa0783120:intron | 50.0% |
| ! | TTTTGCCAGGGGTTATGCCA+GGG | + | chr5_2:66854746-66854765 | Msa0783120:intron | 50.0% |
| ATCGCAAATTGTCCTGCCAG+GGG | - | chr5_2:66854806-66854825 | None:intergenic | 50.0% | |
| CATCGCAAATTGTCCTGCCA+GGG | - | chr5_2:66854807-66854826 | None:intergenic | 50.0% | |
| TCATCGCAAATTGTCCTGCC+AGG | - | chr5_2:66854808-66854827 | None:intergenic | 50.0% | |
| GCAGGACAATTTGCGATGAG+CGG | + | chr5_2:66854809-66854828 | Msa0783120:CDS | 50.0% | |
| TGGCAAATGGACGTTTGCCA+GGG | - | chr5_2:66854865-66854884 | None:intergenic | 50.0% | |
| TTGGCAAATGGACGTTTGCC+AGG | - | chr5_2:66854866-66854885 | None:intergenic | 50.0% | |
| TGGCAAACGTCCATTTGCCA+AGG | + | chr5_2:66854865-66854884 | Msa0783120:CDS | 50.0% | |
| TTGGGTGGGGAAAACCAACA+TGG | + | chr5_2:66854981-66855000 | Msa0783120:CDS | 50.0% | |
| TGGGTGGGGAAAACCAACAT+GGG | + | chr5_2:66854982-66855001 | Msa0783120:CDS | 50.0% | |
| !! | GAAGTACTGGTGACCCATGT+TGG | - | chr5_2:66854998-66855017 | None:intergenic | 50.0% |
| CAGCTCCTGGCAAATTTGCC+AGG | + | chr5_2:66853362-66853381 | Msa0783120:CDS | 55.0% | |
| GGTTTCCCTGGCATTACTCC+TGG | - | chr5_2:66853383-66853402 | None:intergenic | 55.0% | |
| AGTAATGCCAGGGAAACCCC+TGG | + | chr5_2:66853385-66853404 | Msa0783120:CDS | 55.0% | |
| CAATTTGCCAGGGGTTTCCC+TGG | - | chr5_2:66853395-66853414 | None:intergenic | 55.0% | |
| ! | AGGGGTTTGCTCCTGGCTTA+TGG | - | chr5_2:66853433-66853452 | None:intergenic | 55.0% |
| ATAAGCCAGGAGCAAACCCC+TGG | + | chr5_2:66853432-66853451 | Msa0783120:CDS | 55.0% | |
| GGGTTACTGCACTTTGCCAG+GGG | - | chr5_2:66853451-66853470 | None:intergenic | 55.0% | |
| GGGGTTACTGCACTTTGCCA+GGG | - | chr5_2:66853452-66853471 | None:intergenic | 55.0% | |
| AGGGGTTACTGCACTTTGCC+AGG | - | chr5_2:66853453-66853472 | None:intergenic | 55.0% | |
| TGGCAAAGTGCAGTAACCCC+TGG | + | chr5_2:66853452-66853471 | Msa0783120:intron | 55.0% | |
| ! | ACCCCTGGCAAATTTTGGGC+GGG | + | chr5_2:66853467-66853486 | Msa0783120:intron | 55.0% |
| TCCCGCCCAAAATTTGCCAG+GGG | - | chr5_2:66853471-66853490 | None:intergenic | 55.0% | |
| AATTTGCCACGAGCTCAGCC+AGG | - | chr5_2:66853695-66853714 | None:intergenic | 55.0% | |
| CCAAGAGCAAGCTTCACAGG+AGG | - | chr5_2:66853977-66853996 | None:intergenic | 55.0% | |
| ! | CCTCCTGTGAAGCTTGCTCT+TGG | + | chr5_2:66853974-66853993 | Msa0783120:intron | 55.0% |
| ! | TTTTGCCAGGGGTAAACCCC+TGG | + | chr5_2:66854625-66854644 | Msa0783120:intron | 55.0% |
| AATTGCCAGGGGTTTACCCC+TGG | - | chr5_2:66854633-66854652 | None:intergenic | 55.0% | |
| CCATTGCCAGGGAAATTGCC+AGG | - | chr5_2:66854646-66854665 | None:intergenic | 55.0% | |
| CCTGGCAATTTCCCTGGCAA+TGG | + | chr5_2:66854643-66854662 | Msa0783120:intron | 55.0% | |
| ACAAACCCTGGCATAACCCC+TGG | - | chr5_2:66854754-66854773 | None:intergenic | 55.0% | |
| GTTATGCCAGGGTTTGTGCC+AGG | + | chr5_2:66854757-66854776 | Msa0783120:CDS | 55.0% | |
| TTTGCCAGGAGCTAAACCCC+TGG | + | chr5_2:66854787-66854806 | Msa0783120:CDS | 55.0% | |
| TGTGCTCTTGGCAAAACCCC+TGG | + | chr5_2:66854845-66854864 | Msa0783120:CDS | 55.0% | |
| GGCAAATGGACGTTTGCCAG+GGG | - | chr5_2:66854864-66854883 | None:intergenic | 55.0% | |
| TTTACCAGGGATTCTGCCCC+TGG | + | chr5_2:66854898-66854917 | Msa0783120:CDS | 55.0% | |
| !! | ATGCCAGGAGCATCAGCTCC+TGG | + | chr5_2:66853349-66853368 | Msa0783120:intron | 60.0% |
| TTGCCAGGAGCTGATGCTCC+TGG | - | chr5_2:66853355-66853374 | None:intergenic | 60.0% | |
| ! | CTTTGCCAGGGGTTTGCTCC+TGG | - | chr5_2:66853440-66853459 | None:intergenic | 60.0% |
| TTGGAGACCGAGCCTTGCCA+GGG | + | chr5_2:66853663-66853682 | Msa0783120:intron | 60.0% | |
| GCAAGCTTCACAGGAGGCAG+TGG | - | chr5_2:66853971-66853990 | None:intergenic | 60.0% | |
| !! | TGCCAGGAGCGCATTTTGCC+AGG | + | chr5_2:66854773-66854792 | Msa0783120:CDS | 60.0% |
| CTCCTGGCAAAATGCGCTCC+TGG | - | chr5_2:66854778-66854797 | None:intergenic | 60.0% | |
| TTTGCCAGGGGCAGAATCCC+TGG | - | chr5_2:66854905-66854924 | None:intergenic | 60.0% | |
| TTTGCCAGGGGTTGAGCCCC+TGG | - | chr5_2:66853580-66853599 | None:intergenic | 65.0% | |
| GTTGGAGACCGAGCCTTGCC+AGG | + | chr5_2:66853662-66853681 | Msa0783120:intron | 65.0% | |
| TGGAGACCGAGCCTTGCCAG+GGG | + | chr5_2:66853664-66853683 | Msa0783120:intron | 65.0% | |
| GAGCAACCCCTGGCAAGGCT+CGG | - | chr5_2:66853673-66853692 | None:intergenic | 65.0% | |
| GTTGCTCCTGGCTGAGCTCG+TGG | + | chr5_2:66853686-66853705 | Msa0783120:intron | 65.0% | |
| TGCGCTCCTGGCACAAACCC+TGG | - | chr5_2:66854766-66854785 | None:intergenic | 65.0% | |
| ! | CCTGCCAGGGGTTTAGCTCC+TGG | - | chr5_2:66854794-66854813 | None:intergenic | 65.0% |
| CCAGGAGCTAAACCCCTGGC+AGG | + | chr5_2:66854791-66854810 | Msa0783120:CDS | 65.0% | |
| CATGCCAGGGGCTCAACCCC+TGG | + | chr5_2:66853573-66853592 | Msa0783120:intron | 70.0% | |
| GCCTTGCCAGGGGTTGCTCC+TGG | + | chr5_2:66853674-66853693 | Msa0783120:intron | 70.0% | |
| GCCAGGAGCAACCCCTGGCA+AGG | - | chr5_2:66853678-66853697 | None:intergenic | 70.0% | |
| GCTCAGCCAGGAGCAACCCC+TGG | - | chr5_2:66853683-66853702 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 66852226 | 66855198 | 66852226 | ID=Msa0783120;Name=Msa0783120 |
| chr5_2 | mRNA | 66852226 | 66855198 | 66852226 | ID=Msa0783120-mRNA-1;Parent=Msa0783120;Name=Msa0783120-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|0.8|1|1|5|0|399 |
| chr5_2 | exon | 66852226 | 66852616 | 66852226 | ID=Msa0783120-mRNA-1:exon:20071;Parent=Msa0783120-mRNA-1 |
| chr5_2 | exon | 66852810 | 66852934 | 66852810 | ID=Msa0783120-mRNA-1:exon:20072;Parent=Msa0783120-mRNA-1 |
| chr5_2 | exon | 66853031 | 66853162 | 66853031 | ID=Msa0783120-mRNA-1:exon:20073;Parent=Msa0783120-mRNA-1 |
| chr5_2 | exon | 66853356 | 66853463 | 66853356 | ID=Msa0783120-mRNA-1:exon:20074;Parent=Msa0783120-mRNA-1 |
| chr5_2 | exon | 66854755 | 66855198 | 66854755 | ID=Msa0783120-mRNA-1:exon:20075;Parent=Msa0783120-mRNA-1 |
| chr5_2 | CDS | 66852226 | 66852616 | 66852226 | ID=Msa0783120-mRNA-1:cds;Parent=Msa0783120-mRNA-1 |
| chr5_2 | CDS | 66852810 | 66852934 | 66852810 | ID=Msa0783120-mRNA-1:cds;Parent=Msa0783120-mRNA-1 |
| chr5_2 | CDS | 66853031 | 66853162 | 66853031 | ID=Msa0783120-mRNA-1:cds;Parent=Msa0783120-mRNA-1 |
| chr5_2 | CDS | 66853356 | 66853463 | 66853356 | ID=Msa0783120-mRNA-1:cds;Parent=Msa0783120-mRNA-1 |
| chr5_2 | CDS | 66854755 | 66855198 | 66854755 | ID=Msa0783120-mRNA-1:cds;Parent=Msa0783120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
