Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800170 | XP_003612205.2 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800170 | sp|Q42564|APX3_ARATH | 73.745 | 259 | 68 | 0 | 1 | 259 | 1 | 259 | 6.28e-143 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800170 | G7JXJ2 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0800170 | 0.826509 | 2.609279e-54 | -8.615850e-47 |
| Msa0609300 | Msa0800170 | 0.833574 | 4.932662e-56 | -8.615850e-47 |
| Msa0691910 | Msa0800170 | 0.826258 | 2.994260e-54 | -8.615850e-47 |
| Msa0759010 | Msa0800170 | 0.964415 | 2.683613e-123 | -8.615850e-47 |
| Msa0782750 | Msa0800170 | 0.809713 | 1.651852e-50 | -8.615850e-47 |
| Msa0800140 | Msa0800170 | 0.990966 | 3.275778e-185 | -8.615850e-47 |
| Msa0800170 | Msa0800200 | 0.990849 | 1.246258e-184 | -8.615850e-47 |
| Msa0800170 | Msa1268380 | 0.982954 | 1.927852e-156 | -8.615850e-47 |
| Msa0800170 | Msa1268410 | 0.996368 | 1.206050e-226 | -8.615850e-47 |
| Msa0800170 | Msa1268440 | 0.958670 | 1.324062e-116 | -8.615850e-47 |
| Msa0125210 | Msa0800170 | 0.814611 | 1.410966e-51 | -8.615850e-47 |
| Msa0155180 | Msa0800170 | 0.815816 | 7.617292e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800170 | MtrunA17_Chr5g0405731 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Msa0800170 | MtrunA17_Chr4g0037131 | 72.043 | 279 | 73 | 1 | 6 | 279 | 7 | 285 | 7.58e-148 | 415 |
| Msa0800170 | MtrunA17_Chr4g0030171 | 64.583 | 240 | 84 | 1 | 6 | 244 | 8 | 247 | 1.60e-113 | 327 |
| Msa0800170 | MtrunA17_Chr3g0124821 | 49.425 | 261 | 105 | 6 | 13 | 246 | 100 | 360 | 1.52e-76 | 238 |
| Msa0800170 | MtrunA17_Chr3g0137751 | 37.860 | 243 | 127 | 6 | 11 | 243 | 86 | 314 | 4.01e-41 | 144 |
| Msa0800170 | MtrunA17_Chr7g0225221 | 29.278 | 263 | 141 | 10 | 35 | 256 | 60 | 318 | 3.14e-18 | 83.2 |
| Msa0800170 | MtrunA17_Chr4g0053871 | 28.854 | 253 | 135 | 7 | 32 | 243 | 59 | 307 | 1.17e-16 | 78.6 |
| Msa0800170 | MtrunA17_Chr1g0157051 | 29.225 | 284 | 133 | 13 | 22 | 253 | 46 | 313 | 2.03e-16 | 77.8 |
| Msa0800170 | MtrunA17_Chr4g0013721 | 27.208 | 283 | 136 | 9 | 15 | 242 | 113 | 380 | 7.75e-15 | 73.9 |
| Msa0800170 | MtrunA17_Chr6g0467161 | 27.203 | 261 | 133 | 10 | 31 | 247 | 76 | 323 | 1.16e-14 | 73.2 |
| Msa0800170 | MtrunA17_Chr7g0258811 | 24.719 | 267 | 151 | 9 | 22 | 242 | 91 | 353 | 1.78e-13 | 69.7 |
| Msa0800170 | MtrunA17_Chr5g0426581 | 31.928 | 166 | 79 | 5 | 27 | 158 | 113 | 278 | 1.20e-12 | 67.4 |
| Msa0800170 | MtrunA17_Chr3g0129061 | 26.087 | 253 | 133 | 9 | 34 | 242 | 62 | 304 | 2.78e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800170 | AT4G35000.1 | 73.745 | 259 | 68 | 0 | 1 | 259 | 1 | 259 | 6.39e-144 | 405 |
| Msa0800170 | AT4G35970.1 | 66.788 | 274 | 90 | 1 | 6 | 279 | 5 | 277 | 2.67e-135 | 384 |
| Msa0800170 | AT4G35970.2 | 72.018 | 218 | 60 | 1 | 6 | 223 | 5 | 221 | 3.04e-115 | 331 |
| Msa0800170 | AT3G09640.2 | 63.180 | 239 | 88 | 0 | 6 | 244 | 9 | 247 | 3.75e-109 | 316 |
| Msa0800170 | AT3G09640.1 | 63.180 | 239 | 88 | 0 | 6 | 244 | 9 | 247 | 3.75e-109 | 316 |
| Msa0800170 | AT1G07890.2 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800170 | AT1G07890.8 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800170 | AT1G07890.4 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800170 | AT1G07890.7 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800170 | AT1G07890.1 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800170 | AT1G07890.3 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800170 | AT1G07890.5 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800170 | AT1G07890.6 | 59.583 | 240 | 96 | 1 | 6 | 244 | 8 | 247 | 3.81e-104 | 303 |
| Msa0800170 | AT4G08390.2 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa0800170 | AT4G08390.5 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa0800170 | AT4G08390.1 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa0800170 | AT4G08390.3 | 49.042 | 261 | 106 | 6 | 13 | 246 | 105 | 365 | 1.27e-77 | 240 |
| Msa0800170 | AT1G77490.2 | 49.042 | 261 | 106 | 6 | 13 | 246 | 85 | 345 | 1.24e-75 | 237 |
| Msa0800170 | AT1G77490.1 | 49.042 | 261 | 106 | 6 | 13 | 246 | 85 | 345 | 1.58e-75 | 236 |
| Msa0800170 | AT4G08390.4 | 44.828 | 261 | 91 | 7 | 13 | 246 | 106 | 340 | 2.68e-64 | 205 |
| Msa0800170 | AT4G32320.1 | 37.288 | 236 | 124 | 6 | 18 | 243 | 102 | 323 | 1.96e-39 | 140 |
| Msa0800170 | AT4G17690.1 | 37.019 | 208 | 85 | 8 | 72 | 243 | 108 | 305 | 2.88e-22 | 94.7 |
| Msa0800170 | AT4G16270.1 | 30.496 | 282 | 123 | 12 | 23 | 249 | 73 | 336 | 2.09e-21 | 92.8 |
| Msa0800170 | AT1G49570.1 | 27.857 | 280 | 136 | 9 | 22 | 247 | 70 | 337 | 5.62e-19 | 85.9 |
| Msa0800170 | AT4G30170.1 | 30.620 | 258 | 127 | 10 | 31 | 243 | 58 | 308 | 2.79e-16 | 77.8 |
| Msa0800170 | AT4G09010.2 | 34.375 | 160 | 71 | 5 | 32 | 157 | 49 | 208 | 1.10e-15 | 75.9 |
| Msa0800170 | AT4G09010.1 | 34.375 | 160 | 71 | 5 | 32 | 157 | 114 | 273 | 2.73e-15 | 75.5 |
| Msa0800170 | AT5G14130.1 | 27.027 | 259 | 143 | 8 | 31 | 247 | 63 | 317 | 3.00e-15 | 75.1 |
| Msa0800170 | AT5G14130.2 | 27.027 | 259 | 143 | 8 | 31 | 247 | 104 | 358 | 5.04e-15 | 74.7 |
| Msa0800170 | AT4G09010.3 | 34.375 | 160 | 71 | 5 | 32 | 157 | 161 | 320 | 7.14e-15 | 74.3 |
| Msa0800170 | AT4G37530.1 | 26.966 | 267 | 139 | 9 | 32 | 249 | 59 | 318 | 2.74e-14 | 72.4 |
| Msa0800170 | AT5G42180.1 | 28.364 | 275 | 132 | 10 | 22 | 245 | 45 | 305 | 3.65e-14 | 71.6 |
| Msa0800170 | AT4G37520.1 | 26.592 | 267 | 140 | 9 | 32 | 249 | 59 | 318 | 5.37e-13 | 68.6 |
| Msa0800170 | AT3G49960.1 | 28.352 | 261 | 131 | 9 | 32 | 243 | 59 | 312 | 9.05e-13 | 67.8 |
| Msa0800170 | AT4G37530.2 | 32.022 | 178 | 99 | 7 | 32 | 191 | 59 | 232 | 2.06e-12 | 66.2 |
| Msa0800170 | AT5G17820.1 | 26.296 | 270 | 134 | 12 | 10 | 230 | 29 | 282 | 2.16e-12 | 66.6 |
| Msa0800170 | AT5G17820.2 | 26.296 | 270 | 134 | 12 | 10 | 230 | 82 | 335 | 7.29e-12 | 65.5 |
| Msa0800170 | AT5G15180.1 | 26.937 | 271 | 137 | 9 | 26 | 247 | 58 | 316 | 9.22e-12 | 65.1 |
Find 71 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAGGGAACTAATGAAAT+TGG | 0.251753 | 5_3:-13572937 | Msa0800170:intron |
| TGCCTCAACTGTTGTGATCC+TGG | 0.267857 | 5_3:-13572578 | Msa0800170:CDS |
| TAACCAAAGCCTTGCAAGTA+TGG | 0.276478 | 5_3:-13574526 | Msa0800170:exon |
| CATGATTTAATTACCTTGTT+TGG | 0.286806 | 5_3:+13573380 | None:intergenic |
| CACAAGAAACTCTCTGAATT+AGG | 0.339734 | 5_3:-13572661 | Msa0800170:CDS |
| ATGTACTAGTACCTTTCTTC+CGG | 0.351786 | 5_3:+13573565 | None:intergenic |
| TAGCCATACTTGCAAGGCTT+TGG | 0.388173 | 5_3:+13574523 | None:intergenic |
| CCAACTATTCACTTTGTTCC+CGG | 0.389997 | 5_3:-13573584 | Msa0800170:CDS |
| AGGTCCGCATATGAAACTTT+GGG | 0.390870 | 5_3:+13574047 | None:intergenic |
| TTATATGTATTTCAGCTAGC+TGG | 0.393811 | 5_3:-13573635 | Msa0800170:intron |
| TAATTACCTTGTTTGGCATC+TGG | 0.400655 | 5_3:+13573387 | None:intergenic |
| TGATTCCTTATAGAACCATT+TGG | 0.401526 | 5_3:+13574262 | None:intergenic |
| GCCTCAACTGTTGTGATCCT+GGG | 0.428816 | 5_3:-13572577 | Msa0800170:CDS |
| AAAGATCGCTCTAACTTTGA+AGG | 0.430021 | 5_3:-13573083 | Msa0800170:CDS |
| AAGGTCCGCATATGAAACTT+TGG | 0.433809 | 5_3:+13574046 | None:intergenic |
| TGTACTAGTACCTTTCTTCC+GGG | 0.435662 | 5_3:+13573566 | None:intergenic |
| TGGCAGTTATCGTTCTCAAT+TGG | 0.438208 | 5_3:-13572626 | Msa0800170:CDS |
| CATAGAGTTCAACATATTTG+CGG | 0.439517 | 5_3:+13572856 | None:intergenic |
| TCAACATATTTGCGGAATGC+AGG | 0.460562 | 5_3:+13572864 | None:intergenic |
| TCACTTTGTTCCCGGAAGAA+AGG | 0.460671 | 5_3:-13573576 | Msa0800170:intron |
| TATATGTATTTCAGCTAGCT+GGG | 0.463788 | 5_3:-13573634 | Msa0800170:intron |
| TTGCTTGTTATGATTATGAA+AGG | 0.466835 | 5_3:+13574566 | None:intergenic |
| CAATTGGCTAAGGCAGCGTT+AGG | 0.473147 | 5_3:-13572610 | Msa0800170:CDS |
| GTTGTGGCTGTAGAGGTCAC+TGG | 0.475048 | 5_3:-13573611 | Msa0800170:CDS |
| AAAACAGCTGTTGAATTATG+TGG | 0.483315 | 5_3:-13574205 | Msa0800170:intron |
| CATATTTAGCCATACTTGCA+AGG | 0.494767 | 5_3:+13574517 | None:intergenic |
| AGCTGGGGTTGTGGCTGTAG+AGG | 0.496133 | 5_3:-13573618 | Msa0800170:CDS |
| GCTCTAACTTTGAAGGTCAA+TGG | 0.497264 | 5_3:-13573076 | Msa0800170:CDS |
| GGGGTCCAAATGGTTCTATA+AGG | 0.497436 | 5_3:-13574267 | Msa0800170:CDS |
| CCGGGAACAAAGTGAATAGT+TGG | 0.498623 | 5_3:+13573584 | None:intergenic |
| GCTGAACCATGCTGCTAACA+AGG | 0.508818 | 5_3:-13574233 | Msa0800170:CDS |
| ATTTCAGCTAGCTGGGGTTG+TGG | 0.511946 | 5_3:-13573627 | Msa0800170:intron |
| ATTATAAAATAACCTGGTAA+AGG | 0.515916 | 5_3:+13574027 | None:intergenic |
| TTCATATGCGGACCTTTACC+AGG | 0.516618 | 5_3:-13574039 | Msa0800170:intron |
| TCTGGAAGGCGACCTTCTTG+TGG | 0.517530 | 5_3:+13573405 | None:intergenic |
| TTGAGAAACAGAGGAAGTGA+AGG | 0.521165 | 5_3:-13574078 | Msa0800170:intron |
| TTTGGTTAATTTCTGAGAGA+GGG | 0.530694 | 5_3:+13574541 | None:intergenic |
| TCAAGCCCTTGTTAGCAGCA+TGG | 0.531740 | 5_3:+13574227 | None:intergenic |
| ATATGTTGAACTCTATGCTA+AGG | 0.543090 | 5_3:-13572850 | Msa0800170:intron |
| TTGTACCAAAGTGTGGCCTC+CGG | 0.545189 | 5_3:+13573213 | None:intergenic |
| AAAGACATTGTAGCTCTCTC+CGG | 0.548124 | 5_3:-13573232 | Msa0800170:CDS |
| CGCCTTCCAGATGCCAAACA+AGG | 0.549529 | 5_3:-13573393 | Msa0800170:intron |
| TTATCGTTCTCAATTGGCTA+AGG | 0.549693 | 5_3:-13572620 | Msa0800170:CDS |
| TGCTTGTTATGATTATGAAA+GGG | 0.553361 | 5_3:+13574567 | None:intergenic |
| ATTTATAGGTGGCATGATGC+TGG | 0.555051 | 5_3:-13574316 | Msa0800170:intron |
| TACCTTGTTTGGCATCTGGA+AGG | 0.559846 | 5_3:+13573391 | None:intergenic |
| CTTTGGTTAATTTCTGAGAG+AGG | 0.565568 | 5_3:+13574540 | None:intergenic |
| AATTAATTTGTACCAAAGTG+TGG | 0.573092 | 5_3:+13573206 | None:intergenic |
| GGCTAAGGCAGCGTTAGGAA+TGG | 0.573545 | 5_3:-13572605 | Msa0800170:CDS |
| TAAGAGTTATCAAACTTGAG+AGG | 0.573775 | 5_3:+13573044 | None:intergenic |
| TGTTATGATTATGAAAGGGT+TGG | 0.578122 | 5_3:+13574571 | None:intergenic |
| TTGAGAACGATAACTGCCAC+CGG | 0.582999 | 5_3:+13572630 | None:intergenic |
| AAGAGTTATCAAACTTGAGA+GGG | 0.589980 | 5_3:+13573045 | None:intergenic |
| TCTCTCCGGAGGCCACACTT+TGG | 0.591661 | 5_3:-13573218 | Msa0800170:intron |
| TCTGAATTAGGCTTCAATCC+CGG | 0.595170 | 5_3:-13572649 | Msa0800170:CDS |
| TACGCTAATCGTAGCATGAG+AGG | 0.599636 | 5_3:+13574414 | None:intergenic |
| GGTCCGCATATGAAACTTTG+GGG | 0.601066 | 5_3:+13574048 | None:intergenic |
| TCAACTAGAGCCTTGTCTGT+AGG | 0.607702 | 5_3:+13572891 | None:intergenic |
| ATTGAAGCTTCCTACAGACA+AGG | 0.615401 | 5_3:-13572901 | Msa0800170:CDS |
| CTGAACCATGCTGCTAACAA+GGG | 0.615953 | 5_3:-13574232 | Msa0800170:CDS |
| GACATTGTAGCTCTCTCCGG+AGG | 0.618468 | 5_3:-13573229 | Msa0800170:CDS |
| TCATTGGAATCTCCACAAGA+AGG | 0.637304 | 5_3:-13573417 | Msa0800170:CDS |
| ACCCAGGATCACAACAGTTG+AGG | 0.637431 | 5_3:+13572576 | None:intergenic |
| ATATGTATTTCAGCTAGCTG+GGG | 0.644095 | 5_3:-13573633 | Msa0800170:intron |
| TGAGCTCAAGTAAGTAACCC+AGG | 0.647120 | 5_3:+13572560 | None:intergenic |
| AGAGTATGTTAAAGAAATCG+AGG | 0.648519 | 5_3:-13574484 | Msa0800170:CDS |
| ACACCCCAAAGTTTCATATG+CGG | 0.685445 | 5_3:-13574051 | Msa0800170:CDS |
| TGAGAACGATAACTGCCACC+GGG | 0.688112 | 5_3:+13572631 | None:intergenic |
| GTGGCTGTAGAGGTCACTGG+TGG | 0.707904 | 5_3:-13573608 | Msa0800170:CDS |
| GAATTAGGCTTCAATCCCGG+TGG | 0.713172 | 5_3:-13572646 | Msa0800170:CDS |
| GTATGTTAAAGAAATCGAGG+AGG | 0.749911 | 5_3:-13574481 | Msa0800170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATATAGTATTGATTTAT+AGG | - | chr5_3:13572625-13572644 | Msa0800170:CDS | 10.0% |
| !! | AAAAAAATTATAAAATAACC+TGG | + | chr5_3:13572937-13572956 | None:intergenic | 10.0% |
| !!! | AATATATAGTATTGATTTAT+AGG | - | chr5_3:13572625-13572644 | Msa0800170:CDS | 10.0% |
| !! | AAAAAAATTATAAAATAACC+TGG | + | chr5_3:13572937-13572956 | None:intergenic | 10.0% |
| !! | TATGTATATGTTATAGTAAA+AGG | + | chr5_3:13572597-13572616 | None:intergenic | 15.0% |
| !! | AAGATTAATAAGCAAAAAAT+TGG | + | chr5_3:13572835-13572854 | None:intergenic | 15.0% |
| !!! | TTAATTCATATTCAATTTTG+TGG | + | chr5_3:13573191-13573210 | None:intergenic | 15.0% |
| !! | ATTAATCATGTGTAAAAATA+TGG | + | chr5_3:13573241-13573260 | None:intergenic | 15.0% |
| !!! | TATTTTTACACATGATTAAT+CGG | - | chr5_3:13573241-13573260 | Msa0800170:CDS | 15.0% |
| !! | ATTATTATAGTAGTATTATG+AGG | - | chr5_3:13573494-13573513 | Msa0800170:intron | 15.0% |
| !! | TGTATAAAAAACTATATTTC+AGG | - | chr5_3:13573654-13573673 | Msa0800170:intron | 15.0% |
| !! | TTCTTCAAGAAATATAATAA+AGG | + | chr5_3:13573800-13573819 | None:intergenic | 15.0% |
| !!! | TGTTCTCTATTTTTTTTTTT+TGG | - | chr5_3:13574153-13574172 | Msa0800170:intron | 15.0% |
| !!! | ATAGTATTATGTATTTTTTG+TGG | - | chr5_3:13574209-13574228 | Msa0800170:CDS | 15.0% |
| !!! | TAATGATTTTGAATTTTACT+AGG | - | chr5_3:13574236-13574255 | Msa0800170:CDS | 15.0% |
| !! | TATGTATATGTTATAGTAAA+AGG | + | chr5_3:13572597-13572616 | None:intergenic | 15.0% |
| !! | AAGATTAATAAGCAAAAAAT+TGG | + | chr5_3:13572835-13572854 | None:intergenic | 15.0% |
| !!! | TTAATTCATATTCAATTTTG+TGG | + | chr5_3:13573191-13573210 | None:intergenic | 15.0% |
| !! | ATTAATCATGTGTAAAAATA+TGG | + | chr5_3:13573241-13573260 | None:intergenic | 15.0% |
| !!! | TATTTTTACACATGATTAAT+CGG | - | chr5_3:13573241-13573260 | Msa0800170:CDS | 15.0% |
| !! | ATTATTATAGTAGTATTATG+AGG | - | chr5_3:13573494-13573513 | Msa0800170:intron | 15.0% |
| !! | TGTATAAAAAACTATATTTC+AGG | - | chr5_3:13573654-13573673 | Msa0800170:intron | 15.0% |
| !! | TTCTTCAAGAAATATAATAA+AGG | + | chr5_3:13573800-13573819 | None:intergenic | 15.0% |
| !!! | TGTTCTCTATTTTTTTTTTT+TGG | - | chr5_3:13574153-13574172 | Msa0800170:intron | 15.0% |
| !!! | ATAGTATTATGTATTTTTTG+TGG | - | chr5_3:13574209-13574228 | Msa0800170:CDS | 15.0% |
| !!! | TAATGATTTTGAATTTTACT+AGG | - | chr5_3:13574236-13574255 | Msa0800170:CDS | 15.0% |
| !!! | ATATAGTATTGATTTATAGG+TGG | - | chr5_3:13572628-13572647 | Msa0800170:CDS | 20.0% |
| !! | ATTATAAAATAACCTGGTAA+AGG | + | chr5_3:13572931-13572950 | None:intergenic | 20.0% |
| !! | ATAATCAAGATATTAATGTG+TGG | - | chr5_3:13572970-13572989 | Msa0800170:intron | 20.0% |
| !! | AATTCACTTGAATAAATGAT+TGG | - | chr5_3:13573087-13573106 | Msa0800170:CDS | 20.0% |
| !! | CTAGATTAAGTTAAAGATTA+TGG | - | chr5_3:13573115-13573134 | Msa0800170:intron | 20.0% |
| !!! | TATTTTGAATTAGGATTCAT+TGG | - | chr5_3:13573522-13573541 | Msa0800170:intron | 20.0% |
| !! | TCATTCATTTCAATTGATAA+GGG | - | chr5_3:13573839-13573858 | Msa0800170:intron | 20.0% |
| !! | AATACAAGATTAACATAAAC+AGG | - | chr5_3:13574002-13574021 | Msa0800170:intron | 20.0% |
| !! | ATACAAGATTAACATAAACA+GGG | - | chr5_3:13574003-13574022 | Msa0800170:intron | 20.0% |
| !!! | ATGATGATATGTTTTTTATG+AGG | + | chr5_3:13574510-13574529 | None:intergenic | 20.0% |
| !!! | ATATAGTATTGATTTATAGG+TGG | - | chr5_3:13572628-13572647 | Msa0800170:CDS | 20.0% |
| !! | ATTATAAAATAACCTGGTAA+AGG | + | chr5_3:13572931-13572950 | None:intergenic | 20.0% |
| !! | ATAATCAAGATATTAATGTG+TGG | - | chr5_3:13572970-13572989 | Msa0800170:intron | 20.0% |
| !! | AATTCACTTGAATAAATGAT+TGG | - | chr5_3:13573087-13573106 | Msa0800170:CDS | 20.0% |
| !! | CTAGATTAAGTTAAAGATTA+TGG | - | chr5_3:13573115-13573134 | Msa0800170:intron | 20.0% |
| !!! | TATTTTGAATTAGGATTCAT+TGG | - | chr5_3:13573522-13573541 | Msa0800170:intron | 20.0% |
| !! | TCATTCATTTCAATTGATAA+GGG | - | chr5_3:13573839-13573858 | Msa0800170:intron | 20.0% |
| !! | AATACAAGATTAACATAAAC+AGG | - | chr5_3:13574002-13574021 | Msa0800170:intron | 20.0% |
| !! | ATACAAGATTAACATAAACA+GGG | - | chr5_3:13574003-13574022 | Msa0800170:intron | 20.0% |
| !!! | ATGATGATATGTTTTTTATG+AGG | + | chr5_3:13574510-13574529 | None:intergenic | 20.0% |
| !!! | TGCTTGTTATGATTATGAAA+GGG | + | chr5_3:13572391-13572410 | None:intergenic | 25.0% |
| !!! | TTGCTTGTTATGATTATGAA+AGG | + | chr5_3:13572392-13572411 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTGAGAAACAG+AGG | - | chr5_3:13572868-13572887 | Msa0800170:CDS | 25.0% |
| ! | TTATGTACAAAAATGTTTCG+TGG | - | chr5_3:13573008-13573027 | Msa0800170:intron | 25.0% |
| ! | CATAATCAACTGCAAAAATA+TGG | - | chr5_3:13573062-13573081 | Msa0800170:CDS | 25.0% |
| !!! | ATGTAGTTTGTTTTTGTCAA+AGG | - | chr5_3:13573144-13573163 | Msa0800170:intron | 25.0% |
| ! | TAGATTGTTACTAAATCATG+AGG | + | chr5_3:13573464-13573483 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTTGAATT+AGG | - | chr5_3:13573513-13573532 | Msa0800170:intron | 25.0% |
| ! | CATGATTTAATTACCTTGTT+TGG | + | chr5_3:13573578-13573597 | None:intergenic | 25.0% |
| !!! | AATTAATTTGTACCAAAGTG+TGG | + | chr5_3:13573752-13573771 | None:intergenic | 25.0% |
| ! | AGTGTTTGAATTATTATGGT+TGG | + | chr5_3:13573776-13573795 | None:intergenic | 25.0% |
| !!! | AGGAAGTGTTTGAATTATTA+TGG | + | chr5_3:13573780-13573799 | None:intergenic | 25.0% |
| ! | CTCATTCATTTCAATTGATA+AGG | - | chr5_3:13573838-13573857 | Msa0800170:intron | 25.0% |
| !!! | TGCTTGTTATGATTATGAAA+GGG | + | chr5_3:13572391-13572410 | None:intergenic | 25.0% |
| !!! | TTGCTTGTTATGATTATGAA+AGG | + | chr5_3:13572392-13572411 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTGAGAAACAG+AGG | - | chr5_3:13572868-13572887 | Msa0800170:CDS | 25.0% |
| ! | TTATGTACAAAAATGTTTCG+TGG | - | chr5_3:13573008-13573027 | Msa0800170:intron | 25.0% |
| ! | CATAATCAACTGCAAAAATA+TGG | - | chr5_3:13573062-13573081 | Msa0800170:CDS | 25.0% |
| !!! | ATGTAGTTTGTTTTTGTCAA+AGG | - | chr5_3:13573144-13573163 | Msa0800170:intron | 25.0% |
| ! | TAGATTGTTACTAAATCATG+AGG | + | chr5_3:13573464-13573483 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTTGAATT+AGG | - | chr5_3:13573513-13573532 | Msa0800170:intron | 25.0% |
| ! | CATGATTTAATTACCTTGTT+TGG | + | chr5_3:13573578-13573597 | None:intergenic | 25.0% |
| !!! | AATTAATTTGTACCAAAGTG+TGG | + | chr5_3:13573752-13573771 | None:intergenic | 25.0% |
| ! | AGTGTTTGAATTATTATGGT+TGG | + | chr5_3:13573776-13573795 | None:intergenic | 25.0% |
| !!! | AGGAAGTGTTTGAATTATTA+TGG | + | chr5_3:13573780-13573799 | None:intergenic | 25.0% |
| ! | CTCATTCATTTCAATTGATA+AGG | - | chr5_3:13573838-13573857 | Msa0800170:intron | 25.0% |
| TGTTATGATTATGAAAGGGT+TGG | + | chr5_3:13572387-13572406 | None:intergenic | 30.0% | |
| ! | TTTGGTTAATTTCTGAGAGA+GGG | + | chr5_3:13572417-13572436 | None:intergenic | 30.0% |
| AGAGTATGTTAAAGAAATCG+AGG | - | chr5_3:13572471-13572490 | Msa0800170:three_prime_UTR | 30.0% | |
| TGATTCCTTATAGAACCATT+TGG | + | chr5_3:13572696-13572715 | None:intergenic | 30.0% | |
| AAAACAGCTGTTGAATTATG+TGG | - | chr5_3:13572750-13572769 | Msa0800170:intron | 30.0% | |
| TTATATGTATTTCAGCTAGC+TGG | - | chr5_3:13573320-13573339 | Msa0800170:intron | 30.0% | |
| TATATGTATTTCAGCTAGCT+GGG | - | chr5_3:13573321-13573340 | Msa0800170:intron | 30.0% | |
| CATTTCAATTGATAAGGGTA+AGG | - | chr5_3:13573844-13573863 | Msa0800170:intron | 30.0% | |
| AAGAGTTATCAAACTTGAGA+GGG | + | chr5_3:13573913-13573932 | None:intergenic | 30.0% | |
| TAAGAGTTATCAAACTTGAG+AGG | + | chr5_3:13573914-13573933 | None:intergenic | 30.0% | |
| AAACAGGGAACTAATGAAAT+TGG | - | chr5_3:13574018-13574037 | Msa0800170:intron | 30.0% | |
| CATAGAGTTCAACATATTTG+CGG | + | chr5_3:13574102-13574121 | None:intergenic | 30.0% | |
| ATATGTTGAACTCTATGCTA+AGG | - | chr5_3:13574105-13574124 | Msa0800170:intron | 30.0% | |
| TGTTATGATTATGAAAGGGT+TGG | + | chr5_3:13572387-13572406 | None:intergenic | 30.0% | |
| ! | TTTGGTTAATTTCTGAGAGA+GGG | + | chr5_3:13572417-13572436 | None:intergenic | 30.0% |
| AGAGTATGTTAAAGAAATCG+AGG | - | chr5_3:13572471-13572490 | Msa0800170:three_prime_UTR | 30.0% | |
| TGATTCCTTATAGAACCATT+TGG | + | chr5_3:13572696-13572715 | None:intergenic | 30.0% | |
| AAAACAGCTGTTGAATTATG+TGG | - | chr5_3:13572750-13572769 | Msa0800170:intron | 30.0% | |
| TTATATGTATTTCAGCTAGC+TGG | - | chr5_3:13573320-13573339 | Msa0800170:intron | 30.0% | |
| TATATGTATTTCAGCTAGCT+GGG | - | chr5_3:13573321-13573340 | Msa0800170:intron | 30.0% | |
| CATTTCAATTGATAAGGGTA+AGG | - | chr5_3:13573844-13573863 | Msa0800170:intron | 30.0% | |
| AAGAGTTATCAAACTTGAGA+GGG | + | chr5_3:13573913-13573932 | None:intergenic | 30.0% | |
| TAAGAGTTATCAAACTTGAG+AGG | + | chr5_3:13573914-13573933 | None:intergenic | 30.0% | |
| AAACAGGGAACTAATGAAAT+TGG | - | chr5_3:13574018-13574037 | Msa0800170:intron | 30.0% | |
| CATAGAGTTCAACATATTTG+CGG | + | chr5_3:13574102-13574121 | None:intergenic | 30.0% | |
| ATATGTTGAACTCTATGCTA+AGG | - | chr5_3:13574105-13574124 | Msa0800170:intron | 30.0% | |
| ! | CTTTGGTTAATTTCTGAGAG+AGG | + | chr5_3:13572418-13572437 | None:intergenic | 35.0% |
| CATATTTAGCCATACTTGCA+AGG | + | chr5_3:13572441-13572460 | None:intergenic | 35.0% | |
| GTATGTTAAAGAAATCGAGG+AGG | - | chr5_3:13572474-13572493 | Msa0800170:three_prime_UTR | 35.0% | |
| GATATTAATGTGTGGAGTCA+TGG | - | chr5_3:13572978-13572997 | Msa0800170:intron | 35.0% | |
| ATATGTATTTCAGCTAGCTG+GGG | - | chr5_3:13573322-13573341 | Msa0800170:intron | 35.0% | |
| ATGTACTAGTACCTTTCTTC+CGG | + | chr5_3:13573393-13573412 | None:intergenic | 35.0% | |
| ! | TAATTACCTTGTTTGGCATC+TGG | + | chr5_3:13573571-13573590 | None:intergenic | 35.0% |
| ! | AAGAGAGATCTTTTATCGCA+TGG | - | chr5_3:13573689-13573708 | Msa0800170:intron | 35.0% |
| ! | AGAGAGATCTTTTATCGCAT+GGG | - | chr5_3:13573690-13573709 | Msa0800170:intron | 35.0% |
| AAAGATCGCTCTAACTTTGA+AGG | - | chr5_3:13573872-13573891 | Msa0800170:intron | 35.0% | |
| CACAAGAAACTCTCTGAATT+AGG | - | chr5_3:13574294-13574313 | Msa0800170:CDS | 35.0% | |
| TTATCGTTCTCAATTGGCTA+AGG | - | chr5_3:13574335-13574354 | Msa0800170:intron | 35.0% | |
| ! | CTTTGGTTAATTTCTGAGAG+AGG | + | chr5_3:13572418-13572437 | None:intergenic | 35.0% |
| CATATTTAGCCATACTTGCA+AGG | + | chr5_3:13572441-13572460 | None:intergenic | 35.0% | |
| GTATGTTAAAGAAATCGAGG+AGG | - | chr5_3:13572474-13572493 | Msa0800170:three_prime_UTR | 35.0% | |
| GATATTAATGTGTGGAGTCA+TGG | - | chr5_3:13572978-13572997 | Msa0800170:intron | 35.0% | |
| ATATGTATTTCAGCTAGCTG+GGG | - | chr5_3:13573322-13573341 | Msa0800170:intron | 35.0% | |
| ATGTACTAGTACCTTTCTTC+CGG | + | chr5_3:13573393-13573412 | None:intergenic | 35.0% | |
| ! | TAATTACCTTGTTTGGCATC+TGG | + | chr5_3:13573571-13573590 | None:intergenic | 35.0% |
| ! | AAGAGAGATCTTTTATCGCA+TGG | - | chr5_3:13573689-13573708 | Msa0800170:intron | 35.0% |
| ! | AGAGAGATCTTTTATCGCAT+GGG | - | chr5_3:13573690-13573709 | Msa0800170:intron | 35.0% |
| AAAGATCGCTCTAACTTTGA+AGG | - | chr5_3:13573872-13573891 | Msa0800170:intron | 35.0% | |
| CACAAGAAACTCTCTGAATT+AGG | - | chr5_3:13574294-13574313 | Msa0800170:CDS | 35.0% | |
| TTATCGTTCTCAATTGGCTA+AGG | - | chr5_3:13574335-13574354 | Msa0800170:intron | 35.0% | |
| TAACCAAAGCCTTGCAAGTA+TGG | - | chr5_3:13572429-13572448 | Msa0800170:three_prime_UTR | 40.0% | |
| ATTTATAGGTGGCATGATGC+TGG | - | chr5_3:13572639-13572658 | Msa0800170:CDS | 40.0% | |
| TACGACGCAAAAACAAGAAC+AGG | - | chr5_3:13572666-13572685 | Msa0800170:CDS | 40.0% | |
| ACGACGCAAAAACAAGAACA+GGG | - | chr5_3:13572667-13572686 | Msa0800170:CDS | 40.0% | |
| GAATTATGTGGTCAGTGAGA+CGG | - | chr5_3:13572762-13572781 | Msa0800170:intron | 40.0% | |
| TTGAGAAACAGAGGAAGTGA+AGG | - | chr5_3:13572877-13572896 | Msa0800170:CDS | 40.0% | |
| ACACCCCAAAGTTTCATATG+CGG | - | chr5_3:13572904-13572923 | Msa0800170:CDS | 40.0% | |
| AGGTCCGCATATGAAACTTT+GGG | + | chr5_3:13572911-13572930 | None:intergenic | 40.0% | |
| AAGGTCCGCATATGAAACTT+TGG | + | chr5_3:13572912-13572931 | None:intergenic | 40.0% | |
| CCAACTATTCACTTTGTTCC+CGG | - | chr5_3:13573371-13573390 | Msa0800170:intron | 40.0% | |
| TGTACTAGTACCTTTCTTCC+GGG | + | chr5_3:13573392-13573411 | None:intergenic | 40.0% | |
| TCATTGGAATCTCCACAAGA+AGG | - | chr5_3:13573538-13573557 | Msa0800170:intron | 40.0% | |
| AAAGACATTGTAGCTCTCTC+CGG | - | chr5_3:13573723-13573742 | Msa0800170:intron | 40.0% | |
| ! | GCTCTAACTTTGAAGGTCAA+TGG | - | chr5_3:13573879-13573898 | Msa0800170:intron | 40.0% |
| ATTGAAGCTTCCTACAGACA+AGG | - | chr5_3:13574054-13574073 | Msa0800170:CDS | 40.0% | |
| TCAACATATTTGCGGAATGC+AGG | + | chr5_3:13574094-13574113 | None:intergenic | 40.0% | |
| TCTGAATTAGGCTTCAATCC+CGG | - | chr5_3:13574306-13574325 | Msa0800170:CDS | 40.0% | |
| TGGCAGTTATCGTTCTCAAT+TGG | - | chr5_3:13574329-13574348 | Msa0800170:intron | 40.0% | |
| TAACCAAAGCCTTGCAAGTA+TGG | - | chr5_3:13572429-13572448 | Msa0800170:three_prime_UTR | 40.0% | |
| ATTTATAGGTGGCATGATGC+TGG | - | chr5_3:13572639-13572658 | Msa0800170:CDS | 40.0% | |
| TACGACGCAAAAACAAGAAC+AGG | - | chr5_3:13572666-13572685 | Msa0800170:CDS | 40.0% | |
| ACGACGCAAAAACAAGAACA+GGG | - | chr5_3:13572667-13572686 | Msa0800170:CDS | 40.0% | |
| GAATTATGTGGTCAGTGAGA+CGG | - | chr5_3:13572762-13572781 | Msa0800170:intron | 40.0% | |
| TTGAGAAACAGAGGAAGTGA+AGG | - | chr5_3:13572877-13572896 | Msa0800170:CDS | 40.0% | |
| ACACCCCAAAGTTTCATATG+CGG | - | chr5_3:13572904-13572923 | Msa0800170:CDS | 40.0% | |
| AGGTCCGCATATGAAACTTT+GGG | + | chr5_3:13572911-13572930 | None:intergenic | 40.0% | |
| AAGGTCCGCATATGAAACTT+TGG | + | chr5_3:13572912-13572931 | None:intergenic | 40.0% | |
| CCAACTATTCACTTTGTTCC+CGG | - | chr5_3:13573371-13573390 | Msa0800170:intron | 40.0% | |
| TGTACTAGTACCTTTCTTCC+GGG | + | chr5_3:13573392-13573411 | None:intergenic | 40.0% | |
| TCATTGGAATCTCCACAAGA+AGG | - | chr5_3:13573538-13573557 | Msa0800170:intron | 40.0% | |
| AAAGACATTGTAGCTCTCTC+CGG | - | chr5_3:13573723-13573742 | Msa0800170:intron | 40.0% | |
| ! | GCTCTAACTTTGAAGGTCAA+TGG | - | chr5_3:13573879-13573898 | Msa0800170:intron | 40.0% |
| ATTGAAGCTTCCTACAGACA+AGG | - | chr5_3:13574054-13574073 | Msa0800170:CDS | 40.0% | |
| TCAACATATTTGCGGAATGC+AGG | + | chr5_3:13574094-13574113 | None:intergenic | 40.0% | |
| TCTGAATTAGGCTTCAATCC+CGG | - | chr5_3:13574306-13574325 | Msa0800170:CDS | 40.0% | |
| TGGCAGTTATCGTTCTCAAT+TGG | - | chr5_3:13574329-13574348 | Msa0800170:intron | 40.0% | |
| TAGCCATACTTGCAAGGCTT+TGG | + | chr5_3:13572435-13572454 | None:intergenic | 45.0% | |
| TACGCTAATCGTAGCATGAG+AGG | + | chr5_3:13572544-13572563 | None:intergenic | 45.0% | |
| CGACGCAAAAACAAGAACAG+GGG | - | chr5_3:13572668-13572687 | Msa0800170:CDS | 45.0% | |
| GACGCAAAAACAAGAACAGG+GGG | - | chr5_3:13572669-13572688 | Msa0800170:CDS | 45.0% | |
| ! | GGGGTCCAAATGGTTCTATA+AGG | - | chr5_3:13572688-13572707 | Msa0800170:CDS | 45.0% |
| CTGAACCATGCTGCTAACAA+GGG | - | chr5_3:13572723-13572742 | Msa0800170:intron | 45.0% | |
| GGTCCGCATATGAAACTTTG+GGG | + | chr5_3:13572910-13572929 | None:intergenic | 45.0% | |
| TTCATATGCGGACCTTTACC+AGG | - | chr5_3:13572916-13572935 | Msa0800170:CDS | 45.0% | |
| TCCTCGCATGTGTGCTAAAA+AGG | - | chr5_3:13573264-13573283 | Msa0800170:CDS | 45.0% | |
| CCTCGCATGTGTGCTAAAAA+GGG | - | chr5_3:13573265-13573284 | Msa0800170:CDS | 45.0% | |
| CCGGGAACAAAGTGAATAGT+TGG | + | chr5_3:13573374-13573393 | None:intergenic | 45.0% | |
| TCACTTTGTTCCCGGAAGAA+AGG | - | chr5_3:13573379-13573398 | Msa0800170:intron | 45.0% | |
| ! | TACCTTGTTTGGCATCTGGA+AGG | + | chr5_3:13573567-13573586 | None:intergenic | 45.0% |
| ! | TCAACTAGAGCCTTGTCTGT+AGG | + | chr5_3:13574067-13574086 | None:intergenic | 45.0% |
| TTGAGAACGATAACTGCCAC+CGG | + | chr5_3:13574328-13574347 | None:intergenic | 45.0% | |
| TGAGCTCAAGTAAGTAACCC+AGG | + | chr5_3:13574398-13574417 | None:intergenic | 45.0% | |
| TAGCCATACTTGCAAGGCTT+TGG | + | chr5_3:13572435-13572454 | None:intergenic | 45.0% | |
| TACGCTAATCGTAGCATGAG+AGG | + | chr5_3:13572544-13572563 | None:intergenic | 45.0% | |
| CGACGCAAAAACAAGAACAG+GGG | - | chr5_3:13572668-13572687 | Msa0800170:CDS | 45.0% | |
| GACGCAAAAACAAGAACAGG+GGG | - | chr5_3:13572669-13572688 | Msa0800170:CDS | 45.0% | |
| ! | GGGGTCCAAATGGTTCTATA+AGG | - | chr5_3:13572688-13572707 | Msa0800170:CDS | 45.0% |
| CTGAACCATGCTGCTAACAA+GGG | - | chr5_3:13572723-13572742 | Msa0800170:intron | 45.0% | |
| GGTCCGCATATGAAACTTTG+GGG | + | chr5_3:13572910-13572929 | None:intergenic | 45.0% | |
| TTCATATGCGGACCTTTACC+AGG | - | chr5_3:13572916-13572935 | Msa0800170:CDS | 45.0% | |
| TCCTCGCATGTGTGCTAAAA+AGG | - | chr5_3:13573264-13573283 | Msa0800170:CDS | 45.0% | |
| CCTCGCATGTGTGCTAAAAA+GGG | - | chr5_3:13573265-13573284 | Msa0800170:CDS | 45.0% | |
| CCGGGAACAAAGTGAATAGT+TGG | + | chr5_3:13573374-13573393 | None:intergenic | 45.0% | |
| TCACTTTGTTCCCGGAAGAA+AGG | - | chr5_3:13573379-13573398 | Msa0800170:intron | 45.0% | |
| ! | TACCTTGTTTGGCATCTGGA+AGG | + | chr5_3:13573567-13573586 | None:intergenic | 45.0% |
| ! | TCAACTAGAGCCTTGTCTGT+AGG | + | chr5_3:13574067-13574086 | None:intergenic | 45.0% |
| TTGAGAACGATAACTGCCAC+CGG | + | chr5_3:13574328-13574347 | None:intergenic | 45.0% | |
| TGAGCTCAAGTAAGTAACCC+AGG | + | chr5_3:13574398-13574417 | None:intergenic | 45.0% | |
| !! | AAAATTAATTAAACAAATTA+AGG | + | chr5_3:13572794-13572813 | None:intergenic | 5.0% |
| !! | AAAATTAATTAAACAAATTA+AGG | + | chr5_3:13572794-13572813 | None:intergenic | 5.0% |
| ACAAGAACAGGGGGTCCAAA+TGG | - | chr5_3:13572678-13572697 | Msa0800170:CDS | 50.0% | |
| GCTGAACCATGCTGCTAACA+AGG | - | chr5_3:13572722-13572741 | Msa0800170:intron | 50.0% | |
| TCAAGCCCTTGTTAGCAGCA+TGG | + | chr5_3:13572731-13572750 | None:intergenic | 50.0% | |
| TTATGTGGTCAGTGAGACGG+TGG | - | chr5_3:13572765-13572784 | Msa0800170:intron | 50.0% | |
| !! | CCCTTTTTAGCACACATGCG+AGG | + | chr5_3:13573268-13573287 | None:intergenic | 50.0% |
| ATTTCAGCTAGCTGGGGTTG+TGG | - | chr5_3:13573328-13573347 | Msa0800170:intron | 50.0% | |
| TTGTACCAAAGTGTGGCCTC+CGG | + | chr5_3:13573745-13573764 | None:intergenic | 50.0% | |
| GAATTAGGCTTCAATCCCGG+TGG | - | chr5_3:13574309-13574328 | Msa0800170:CDS | 50.0% | |
| TGAGAACGATAACTGCCACC+GGG | + | chr5_3:13574327-13574346 | None:intergenic | 50.0% | |
| CAATTGGCTAAGGCAGCGTT+AGG | - | chr5_3:13574345-13574364 | Msa0800170:intron | 50.0% | |
| TGCCTCAACTGTTGTGATCC+TGG | - | chr5_3:13574377-13574396 | Msa0800170:intron | 50.0% | |
| GCCTCAACTGTTGTGATCCT+GGG | - | chr5_3:13574378-13574397 | Msa0800170:intron | 50.0% | |
| ACCCAGGATCACAACAGTTG+AGG | + | chr5_3:13574382-13574401 | None:intergenic | 50.0% | |
| ACAAGAACAGGGGGTCCAAA+TGG | - | chr5_3:13572678-13572697 | Msa0800170:CDS | 50.0% | |
| GCTGAACCATGCTGCTAACA+AGG | - | chr5_3:13572722-13572741 | Msa0800170:intron | 50.0% | |
| TCAAGCCCTTGTTAGCAGCA+TGG | + | chr5_3:13572731-13572750 | None:intergenic | 50.0% | |
| TTATGTGGTCAGTGAGACGG+TGG | - | chr5_3:13572765-13572784 | Msa0800170:intron | 50.0% | |
| !! | CCCTTTTTAGCACACATGCG+AGG | + | chr5_3:13573268-13573287 | None:intergenic | 50.0% |
| ATTTCAGCTAGCTGGGGTTG+TGG | - | chr5_3:13573328-13573347 | Msa0800170:intron | 50.0% | |
| TTGTACCAAAGTGTGGCCTC+CGG | + | chr5_3:13573745-13573764 | None:intergenic | 50.0% | |
| GAATTAGGCTTCAATCCCGG+TGG | - | chr5_3:13574309-13574328 | Msa0800170:CDS | 50.0% | |
| TGAGAACGATAACTGCCACC+GGG | + | chr5_3:13574327-13574346 | None:intergenic | 50.0% | |
| CAATTGGCTAAGGCAGCGTT+AGG | - | chr5_3:13574345-13574364 | Msa0800170:intron | 50.0% | |
| TGCCTCAACTGTTGTGATCC+TGG | - | chr5_3:13574377-13574396 | Msa0800170:intron | 50.0% | |
| GCCTCAACTGTTGTGATCCT+GGG | - | chr5_3:13574378-13574397 | Msa0800170:intron | 50.0% | |
| ACCCAGGATCACAACAGTTG+AGG | + | chr5_3:13574382-13574401 | None:intergenic | 50.0% | |
| GTTGTGGCTGTAGAGGTCAC+TGG | - | chr5_3:13573344-13573363 | Msa0800170:intron | 55.0% | |
| TCTGGAAGGCGACCTTCTTG+TGG | + | chr5_3:13573553-13573572 | None:intergenic | 55.0% | |
| CGCCTTCCAGATGCCAAACA+AGG | - | chr5_3:13573562-13573581 | Msa0800170:intron | 55.0% | |
| GACATTGTAGCTCTCTCCGG+AGG | - | chr5_3:13573726-13573745 | Msa0800170:intron | 55.0% | |
| GGCTAAGGCAGCGTTAGGAA+TGG | - | chr5_3:13574350-13574369 | Msa0800170:intron | 55.0% | |
| GTTGTGGCTGTAGAGGTCAC+TGG | - | chr5_3:13573344-13573363 | Msa0800170:intron | 55.0% | |
| TCTGGAAGGCGACCTTCTTG+TGG | + | chr5_3:13573553-13573572 | None:intergenic | 55.0% | |
| CGCCTTCCAGATGCCAAACA+AGG | - | chr5_3:13573562-13573581 | Msa0800170:intron | 55.0% | |
| GACATTGTAGCTCTCTCCGG+AGG | - | chr5_3:13573726-13573745 | Msa0800170:intron | 55.0% | |
| GGCTAAGGCAGCGTTAGGAA+TGG | - | chr5_3:13574350-13574369 | Msa0800170:intron | 55.0% | |
| AGCTGGGGTTGTGGCTGTAG+AGG | - | chr5_3:13573337-13573356 | Msa0800170:intron | 60.0% | |
| GTGGCTGTAGAGGTCACTGG+TGG | - | chr5_3:13573347-13573366 | Msa0800170:intron | 60.0% | |
| TCTCTCCGGAGGCCACACTT+TGG | - | chr5_3:13573737-13573756 | Msa0800170:intron | 60.0% | |
| AGCTGGGGTTGTGGCTGTAG+AGG | - | chr5_3:13573337-13573356 | Msa0800170:intron | 60.0% | |
| GTGGCTGTAGAGGTCACTGG+TGG | - | chr5_3:13573347-13573366 | Msa0800170:intron | 60.0% | |
| TCTCTCCGGAGGCCACACTT+TGG | - | chr5_3:13573737-13573756 | Msa0800170:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 13572352 | 13574625 | 13572352 | ID=Msa0800170;Name=Msa0800170 |
| chr5_3 | mRNA | 13572352 | 13574625 | 13572352 | ID=Msa0800170-mRNA-1;Parent=Msa0800170;Name=Msa0800170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=96|1|1|1|1|1|9|191|281 |
| chr5_3 | exon | 13572352 | 13572719 | 13572352 | ID=Msa0800170-mRNA-1:exon:5603;Parent=Msa0800170-mRNA-1 |
| chr5_3 | exon | 13572851 | 13572953 | 13572851 | ID=Msa0800170-mRNA-1:exon:5602;Parent=Msa0800170-mRNA-1 |
| chr5_3 | exon | 13573038 | 13573117 | 13573038 | ID=Msa0800170-mRNA-1:exon:5601;Parent=Msa0800170-mRNA-1 |
| chr5_3 | exon | 13573219 | 13573301 | 13573219 | ID=Msa0800170-mRNA-1:exon:5600;Parent=Msa0800170-mRNA-1 |
| chr5_3 | exon | 13573394 | 13573442 | 13573394 | ID=Msa0800170-mRNA-1:exon:5599;Parent=Msa0800170-mRNA-1 |
| chr5_3 | exon | 13573577 | 13573642 | 13573577 | ID=Msa0800170-mRNA-1:exon:5598;Parent=Msa0800170-mRNA-1 |
| chr5_3 | exon | 13574040 | 13574089 | 13574040 | ID=Msa0800170-mRNA-1:exon:5597;Parent=Msa0800170-mRNA-1 |
| chr5_3 | exon | 13574206 | 13574330 | 13574206 | ID=Msa0800170-mRNA-1:exon:5596;Parent=Msa0800170-mRNA-1 |
| chr5_3 | exon | 13574417 | 13574625 | 13574417 | ID=Msa0800170-mRNA-1:exon:5595;Parent=Msa0800170-mRNA-1 |
| chr5_3 | five_prime_UTR | 13574530 | 13574625 | 13574530 | ID=Msa0800170-mRNA-1:five_prime_utr;Parent=Msa0800170-mRNA-1 |
| chr5_3 | CDS | 13574417 | 13574529 | 13574417 | ID=Msa0800170-mRNA-1:cds;Parent=Msa0800170-mRNA-1 |
| chr5_3 | CDS | 13574206 | 13574330 | 13574206 | ID=Msa0800170-mRNA-1:cds;Parent=Msa0800170-mRNA-1 |
| chr5_3 | CDS | 13574040 | 13574089 | 13574040 | ID=Msa0800170-mRNA-1:cds;Parent=Msa0800170-mRNA-1 |
| chr5_3 | CDS | 13573577 | 13573642 | 13573577 | ID=Msa0800170-mRNA-1:cds;Parent=Msa0800170-mRNA-1 |
| chr5_3 | CDS | 13573394 | 13573442 | 13573394 | ID=Msa0800170-mRNA-1:cds;Parent=Msa0800170-mRNA-1 |
| chr5_3 | CDS | 13573219 | 13573301 | 13573219 | ID=Msa0800170-mRNA-1:cds;Parent=Msa0800170-mRNA-1 |
| chr5_3 | CDS | 13573038 | 13573117 | 13573038 | ID=Msa0800170-mRNA-1:cds;Parent=Msa0800170-mRNA-1 |
| chr5_3 | CDS | 13572851 | 13572953 | 13572851 | ID=Msa0800170-mRNA-1:cds;Parent=Msa0800170-mRNA-1 |
| chr5_3 | CDS | 13572543 | 13572719 | 13572543 | ID=Msa0800170-mRNA-1:cds;Parent=Msa0800170-mRNA-1 |
| chr5_3 | three_prime_UTR | 13572352 | 13572542 | 13572352 | ID=Msa0800170-mRNA-1:three_prime_utr;Parent=Msa0800170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
