Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268410 | sp|Q42564|APX3_ARATH | 73.745 | 259 | 68 | 0 | 1 | 259 | 1 | 259 | 6.28e-143 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268410 | G7JXJ2 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa1268410 | 0.828824 | 7.253862e-55 | -8.615850e-47 |
| Msa0609300 | Msa1268410 | 0.833926 | 4.027858e-56 | -8.615850e-47 |
| Msa0691910 | Msa1268410 | 0.827446 | 1.557150e-54 | -8.615850e-47 |
| Msa0759010 | Msa1268410 | 0.962047 | 2.051338e-120 | -8.615850e-47 |
| Msa0782750 | Msa1268410 | 0.807464 | 4.991133e-50 | -8.615850e-47 |
| Msa0800140 | Msa1268410 | 0.988671 | 6.086047e-175 | -8.615850e-47 |
| Msa0800170 | Msa1268410 | 0.996368 | 1.206050e-226 | -8.615850e-47 |
| Msa0800200 | Msa1268410 | 0.989795 | 1.105593e-179 | -8.615850e-47 |
| Msa0125210 | Msa1268410 | 0.813094 | 3.046517e-51 | -8.615850e-47 |
| Msa0155180 | Msa1268410 | 0.817829 | 2.692051e-52 | -8.615850e-47 |
| Msa1268380 | Msa1268410 | 0.985227 | 6.487288e-163 | -8.615850e-47 |
| Msa1268410 | Msa1268440 | 0.964293 | 3.816383e-123 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268410 | MtrunA17_Chr5g0405731 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Msa1268410 | MtrunA17_Chr4g0037131 | 72.043 | 279 | 73 | 1 | 6 | 279 | 7 | 285 | 7.58e-148 | 415 |
| Msa1268410 | MtrunA17_Chr4g0030171 | 64.583 | 240 | 84 | 1 | 6 | 244 | 8 | 247 | 1.60e-113 | 327 |
| Msa1268410 | MtrunA17_Chr3g0124821 | 49.425 | 261 | 105 | 6 | 13 | 246 | 100 | 360 | 1.52e-76 | 238 |
| Msa1268410 | MtrunA17_Chr3g0137751 | 37.860 | 243 | 127 | 6 | 11 | 243 | 86 | 314 | 4.01e-41 | 144 |
| Msa1268410 | MtrunA17_Chr7g0225221 | 29.278 | 263 | 141 | 10 | 35 | 256 | 60 | 318 | 3.14e-18 | 83.2 |
| Msa1268410 | MtrunA17_Chr4g0053871 | 28.854 | 253 | 135 | 7 | 32 | 243 | 59 | 307 | 1.17e-16 | 78.6 |
| Msa1268410 | MtrunA17_Chr1g0157051 | 29.225 | 284 | 133 | 13 | 22 | 253 | 46 | 313 | 2.03e-16 | 77.8 |
| Msa1268410 | MtrunA17_Chr4g0013721 | 27.208 | 283 | 136 | 9 | 15 | 242 | 113 | 380 | 7.75e-15 | 73.9 |
| Msa1268410 | MtrunA17_Chr6g0467161 | 27.203 | 261 | 133 | 10 | 31 | 247 | 76 | 323 | 1.16e-14 | 73.2 |
| Msa1268410 | MtrunA17_Chr7g0258811 | 24.719 | 267 | 151 | 9 | 22 | 242 | 91 | 353 | 1.78e-13 | 69.7 |
| Msa1268410 | MtrunA17_Chr5g0426581 | 31.928 | 166 | 79 | 5 | 27 | 158 | 113 | 278 | 1.20e-12 | 67.4 |
| Msa1268410 | MtrunA17_Chr3g0129061 | 26.087 | 253 | 133 | 9 | 34 | 242 | 62 | 304 | 2.78e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268410 | AT4G35000.1 | 73.745 | 259 | 68 | 0 | 1 | 259 | 1 | 259 | 6.39e-144 | 405 |
| Msa1268410 | AT4G35970.1 | 66.788 | 274 | 90 | 1 | 6 | 279 | 5 | 277 | 2.67e-135 | 384 |
| Msa1268410 | AT4G35970.2 | 72.018 | 218 | 60 | 1 | 6 | 223 | 5 | 221 | 3.04e-115 | 331 |
| Msa1268410 | AT3G09640.2 | 63.180 | 239 | 88 | 0 | 6 | 244 | 9 | 247 | 3.75e-109 | 316 |
| Msa1268410 | AT3G09640.1 | 63.180 | 239 | 88 | 0 | 6 | 244 | 9 | 247 | 3.75e-109 | 316 |
| Msa1268410 | AT1G07890.2 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268410 | AT1G07890.8 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268410 | AT1G07890.4 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268410 | AT1G07890.7 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268410 | AT1G07890.1 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268410 | AT1G07890.3 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268410 | AT1G07890.5 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268410 | AT1G07890.6 | 59.583 | 240 | 96 | 1 | 6 | 244 | 8 | 247 | 3.81e-104 | 303 |
| Msa1268410 | AT4G08390.2 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa1268410 | AT4G08390.5 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa1268410 | AT4G08390.1 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa1268410 | AT4G08390.3 | 49.042 | 261 | 106 | 6 | 13 | 246 | 105 | 365 | 1.27e-77 | 240 |
| Msa1268410 | AT1G77490.2 | 49.042 | 261 | 106 | 6 | 13 | 246 | 85 | 345 | 1.24e-75 | 237 |
| Msa1268410 | AT1G77490.1 | 49.042 | 261 | 106 | 6 | 13 | 246 | 85 | 345 | 1.58e-75 | 236 |
| Msa1268410 | AT4G08390.4 | 44.828 | 261 | 91 | 7 | 13 | 246 | 106 | 340 | 2.68e-64 | 205 |
| Msa1268410 | AT4G32320.1 | 37.288 | 236 | 124 | 6 | 18 | 243 | 102 | 323 | 1.96e-39 | 140 |
| Msa1268410 | AT4G17690.1 | 37.019 | 208 | 85 | 8 | 72 | 243 | 108 | 305 | 2.88e-22 | 94.7 |
| Msa1268410 | AT4G16270.1 | 30.496 | 282 | 123 | 12 | 23 | 249 | 73 | 336 | 2.09e-21 | 92.8 |
| Msa1268410 | AT1G49570.1 | 27.857 | 280 | 136 | 9 | 22 | 247 | 70 | 337 | 5.62e-19 | 85.9 |
| Msa1268410 | AT4G30170.1 | 30.620 | 258 | 127 | 10 | 31 | 243 | 58 | 308 | 2.79e-16 | 77.8 |
| Msa1268410 | AT4G09010.2 | 34.375 | 160 | 71 | 5 | 32 | 157 | 49 | 208 | 1.10e-15 | 75.9 |
| Msa1268410 | AT4G09010.1 | 34.375 | 160 | 71 | 5 | 32 | 157 | 114 | 273 | 2.73e-15 | 75.5 |
| Msa1268410 | AT5G14130.1 | 27.027 | 259 | 143 | 8 | 31 | 247 | 63 | 317 | 3.00e-15 | 75.1 |
| Msa1268410 | AT5G14130.2 | 27.027 | 259 | 143 | 8 | 31 | 247 | 104 | 358 | 5.04e-15 | 74.7 |
| Msa1268410 | AT4G09010.3 | 34.375 | 160 | 71 | 5 | 32 | 157 | 161 | 320 | 7.14e-15 | 74.3 |
| Msa1268410 | AT4G37530.1 | 26.966 | 267 | 139 | 9 | 32 | 249 | 59 | 318 | 2.74e-14 | 72.4 |
| Msa1268410 | AT5G42180.1 | 28.364 | 275 | 132 | 10 | 22 | 245 | 45 | 305 | 3.65e-14 | 71.6 |
| Msa1268410 | AT4G37520.1 | 26.592 | 267 | 140 | 9 | 32 | 249 | 59 | 318 | 5.37e-13 | 68.6 |
| Msa1268410 | AT3G49960.1 | 28.352 | 261 | 131 | 9 | 32 | 243 | 59 | 312 | 9.05e-13 | 67.8 |
| Msa1268410 | AT4G37530.2 | 32.022 | 178 | 99 | 7 | 32 | 191 | 59 | 232 | 2.06e-12 | 66.2 |
| Msa1268410 | AT5G17820.1 | 26.296 | 270 | 134 | 12 | 10 | 230 | 29 | 282 | 2.16e-12 | 66.6 |
| Msa1268410 | AT5G17820.2 | 26.296 | 270 | 134 | 12 | 10 | 230 | 82 | 335 | 7.29e-12 | 65.5 |
| Msa1268410 | AT5G15180.1 | 26.937 | 271 | 137 | 9 | 26 | 247 | 58 | 316 | 9.22e-12 | 65.1 |
Find 71 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAGGGAACTAATGAAAT+TGG | 0.251753 | 8_3:-1409125 | Msa1268410:intron |
| TGCCTCAACTGTTGTGATCC+TGG | 0.267857 | 8_3:-1408765 | Msa1268410:CDS |
| TAACCAAAGCCTTGCAAGTA+TGG | 0.276478 | 8_3:-1410714 | Msa1268410:exon |
| CATGATTTAATTACCTTGTT+TGG | 0.286806 | 8_3:+1409568 | None:intergenic |
| CACAAGAAACTCTCTGAATT+AGG | 0.339734 | 8_3:-1408848 | Msa1268410:CDS |
| ATGTACTAGTACCTTTCTTC+CGG | 0.351786 | 8_3:+1409753 | None:intergenic |
| TAGCCATACTTGCAAGGCTT+TGG | 0.388173 | 8_3:+1410711 | None:intergenic |
| CCAACTATTCACTTTGTTCC+CGG | 0.389997 | 8_3:-1409772 | Msa1268410:CDS |
| AGGTCCGCATATGAAACTTT+GGG | 0.390870 | 8_3:+1410235 | None:intergenic |
| TTATATGTATTTCAGCTAGC+TGG | 0.393811 | 8_3:-1409823 | Msa1268410:intron |
| TAATTACCTTGTTTGGCATC+TGG | 0.400655 | 8_3:+1409575 | None:intergenic |
| TGATTCCTTATAGAACCATT+TGG | 0.401526 | 8_3:+1410450 | None:intergenic |
| GCCTCAACTGTTGTGATCCT+GGG | 0.428816 | 8_3:-1408764 | Msa1268410:CDS |
| AAAGATCGCTCTAACTTTGA+AGG | 0.430021 | 8_3:-1409271 | Msa1268410:CDS |
| AAGGTCCGCATATGAAACTT+TGG | 0.433809 | 8_3:+1410234 | None:intergenic |
| TGTACTAGTACCTTTCTTCC+GGG | 0.435662 | 8_3:+1409754 | None:intergenic |
| TGGCAGTTATCGTTCTCAAT+TGG | 0.438208 | 8_3:-1408813 | Msa1268410:CDS |
| CATAGAGTTCAACATATTTG+CGG | 0.439517 | 8_3:+1409044 | None:intergenic |
| TCAACATATTTGCGGAATGC+AGG | 0.460562 | 8_3:+1409052 | None:intergenic |
| TCACTTTGTTCCCGGAAGAA+AGG | 0.460671 | 8_3:-1409764 | Msa1268410:intron |
| TATATGTATTTCAGCTAGCT+GGG | 0.463788 | 8_3:-1409822 | Msa1268410:intron |
| TTGCTTGTTATGATTATGAA+AGG | 0.466835 | 8_3:+1410754 | None:intergenic |
| CAATTGGCTAAGGCAGCGTT+AGG | 0.473147 | 8_3:-1408797 | Msa1268410:CDS |
| GTTGTGGCTGTAGAGGTCAC+TGG | 0.475048 | 8_3:-1409799 | Msa1268410:CDS |
| AAAACAGCTGTTGAATTATG+TGG | 0.483315 | 8_3:-1410393 | Msa1268410:intron |
| CATATTTAGCCATACTTGCA+AGG | 0.494767 | 8_3:+1410705 | None:intergenic |
| AGCTGGGGTTGTGGCTGTAG+AGG | 0.496133 | 8_3:-1409806 | Msa1268410:CDS |
| GCTCTAACTTTGAAGGTCAA+TGG | 0.497264 | 8_3:-1409264 | Msa1268410:CDS |
| GGGGTCCAAATGGTTCTATA+AGG | 0.497436 | 8_3:-1410455 | Msa1268410:CDS |
| CCGGGAACAAAGTGAATAGT+TGG | 0.498623 | 8_3:+1409772 | None:intergenic |
| GCTGAACCATGCTGCTAACA+AGG | 0.508818 | 8_3:-1410421 | Msa1268410:CDS |
| ATTTCAGCTAGCTGGGGTTG+TGG | 0.511946 | 8_3:-1409815 | Msa1268410:intron |
| ATTATAAAATAACCTGGTAA+AGG | 0.515916 | 8_3:+1410215 | None:intergenic |
| TTCATATGCGGACCTTTACC+AGG | 0.516618 | 8_3:-1410227 | Msa1268410:intron |
| TCTGGAAGGCGACCTTCTTG+TGG | 0.517530 | 8_3:+1409593 | None:intergenic |
| TTGAGAAACAGAGGAAGTGA+AGG | 0.521165 | 8_3:-1410266 | Msa1268410:intron |
| TTTGGTTAATTTCTGAGAGA+GGG | 0.530694 | 8_3:+1410729 | None:intergenic |
| TCAAGCCCTTGTTAGCAGCA+TGG | 0.531740 | 8_3:+1410415 | None:intergenic |
| ATATGTTGAACTCTATGCTA+AGG | 0.543090 | 8_3:-1409038 | Msa1268410:intron |
| TTGTACCAAAGTGTGGCCTC+CGG | 0.545189 | 8_3:+1409401 | None:intergenic |
| AAAGACATTGTAGCTCTCTC+CGG | 0.548124 | 8_3:-1409420 | Msa1268410:CDS |
| CGCCTTCCAGATGCCAAACA+AGG | 0.549529 | 8_3:-1409581 | Msa1268410:intron |
| TTATCGTTCTCAATTGGCTA+AGG | 0.549693 | 8_3:-1408807 | Msa1268410:CDS |
| TGCTTGTTATGATTATGAAA+GGG | 0.553361 | 8_3:+1410755 | None:intergenic |
| ATTTATAGGTGGCATGATGC+TGG | 0.555051 | 8_3:-1410504 | Msa1268410:intron |
| TACCTTGTTTGGCATCTGGA+AGG | 0.559846 | 8_3:+1409579 | None:intergenic |
| CTTTGGTTAATTTCTGAGAG+AGG | 0.565568 | 8_3:+1410728 | None:intergenic |
| AATTAATTTGTACCAAAGTG+TGG | 0.573092 | 8_3:+1409394 | None:intergenic |
| GGCTAAGGCAGCGTTAGGAA+TGG | 0.573545 | 8_3:-1408792 | Msa1268410:CDS |
| TAAGAGTTATCAAACTTGAG+AGG | 0.573775 | 8_3:+1409232 | None:intergenic |
| TGTTATGATTATGAAAGGGT+TGG | 0.578122 | 8_3:+1410759 | None:intergenic |
| TTGAGAACGATAACTGCCAC+CGG | 0.582999 | 8_3:+1408817 | None:intergenic |
| AAGAGTTATCAAACTTGAGA+GGG | 0.589980 | 8_3:+1409233 | None:intergenic |
| TCTCTCCGGAGGCCACACTT+TGG | 0.591661 | 8_3:-1409406 | Msa1268410:intron |
| TCTGAATTAGGCTTCAATCC+CGG | 0.595170 | 8_3:-1408836 | Msa1268410:CDS |
| TACGCTAATCGTAGCATGAG+AGG | 0.599636 | 8_3:+1410602 | None:intergenic |
| GGTCCGCATATGAAACTTTG+GGG | 0.601066 | 8_3:+1410236 | None:intergenic |
| TCAACTAGAGCCTTGTCTGT+AGG | 0.607702 | 8_3:+1409079 | None:intergenic |
| ATTGAAGCTTCCTACAGACA+AGG | 0.615401 | 8_3:-1409089 | Msa1268410:CDS |
| CTGAACCATGCTGCTAACAA+GGG | 0.615953 | 8_3:-1410420 | Msa1268410:CDS |
| GACATTGTAGCTCTCTCCGG+AGG | 0.618468 | 8_3:-1409417 | Msa1268410:CDS |
| TCATTGGAATCTCCACAAGA+AGG | 0.637304 | 8_3:-1409605 | Msa1268410:CDS |
| ACCCAGGATCACAACAGTTG+AGG | 0.637431 | 8_3:+1408763 | None:intergenic |
| ATATGTATTTCAGCTAGCTG+GGG | 0.644095 | 8_3:-1409821 | Msa1268410:intron |
| TGAGCTCAAGTAAGTAACCC+AGG | 0.647120 | 8_3:+1408747 | None:intergenic |
| AGAGTATGTTAAAGAAATCG+AGG | 0.648519 | 8_3:-1410672 | Msa1268410:CDS |
| ACACCCCAAAGTTTCATATG+CGG | 0.685445 | 8_3:-1410239 | Msa1268410:CDS |
| TGAGAACGATAACTGCCACC+GGG | 0.688112 | 8_3:+1408818 | None:intergenic |
| GTGGCTGTAGAGGTCACTGG+TGG | 0.707904 | 8_3:-1409796 | Msa1268410:CDS |
| GAATTAGGCTTCAATCCCGG+TGG | 0.713172 | 8_3:-1408833 | Msa1268410:CDS |
| GTATGTTAAAGAAATCGAGG+AGG | 0.749911 | 8_3:-1410669 | Msa1268410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATATAGTATTGATTTAT+AGG | - | chr8_3:1408812-1408831 | Msa1268410:CDS | 10.0% |
| !! | AAAAAAATTATAAAATAACC+TGG | + | chr8_3:1409124-1409143 | None:intergenic | 10.0% |
| !!! | AATATATAGTATTGATTTAT+AGG | - | chr8_3:1408812-1408831 | Msa1268410:CDS | 10.0% |
| !! | AAAAAAATTATAAAATAACC+TGG | + | chr8_3:1409124-1409143 | None:intergenic | 10.0% |
| !! | TATGTATATGTTATAGTAAA+AGG | + | chr8_3:1408784-1408803 | None:intergenic | 15.0% |
| !! | AAGATTAATAAGCAAAAAAT+TGG | + | chr8_3:1409022-1409041 | None:intergenic | 15.0% |
| !!! | TTAATTCATATTCAATTTTG+TGG | + | chr8_3:1409378-1409397 | None:intergenic | 15.0% |
| !! | ATTAATCATGTGTAAAAATA+TGG | + | chr8_3:1409428-1409447 | None:intergenic | 15.0% |
| !!! | TATTTTTACACATGATTAAT+CGG | - | chr8_3:1409428-1409447 | Msa1268410:CDS | 15.0% |
| !! | ATTATTATAGTAGTATTATG+AGG | - | chr8_3:1409681-1409700 | Msa1268410:intron | 15.0% |
| !! | TGTATAAAAAACTATATTTC+AGG | - | chr8_3:1409841-1409860 | Msa1268410:intron | 15.0% |
| !! | TTCTTCAAGAAATATAATAA+AGG | + | chr8_3:1409987-1410006 | None:intergenic | 15.0% |
| !!! | GTTCTCTATTTTTTTTTTTT+TGG | - | chr8_3:1410341-1410360 | Msa1268410:intron | 15.0% |
| !!! | ATAGTATTATGTATTTTTTG+TGG | - | chr8_3:1410397-1410416 | Msa1268410:CDS | 15.0% |
| !!! | TAATGATTTTGAATTTTACT+AGG | - | chr8_3:1410424-1410443 | Msa1268410:CDS | 15.0% |
| !! | TATGTATATGTTATAGTAAA+AGG | + | chr8_3:1408784-1408803 | None:intergenic | 15.0% |
| !! | AAGATTAATAAGCAAAAAAT+TGG | + | chr8_3:1409022-1409041 | None:intergenic | 15.0% |
| !!! | TTAATTCATATTCAATTTTG+TGG | + | chr8_3:1409378-1409397 | None:intergenic | 15.0% |
| !! | ATTAATCATGTGTAAAAATA+TGG | + | chr8_3:1409428-1409447 | None:intergenic | 15.0% |
| !!! | TATTTTTACACATGATTAAT+CGG | - | chr8_3:1409428-1409447 | Msa1268410:CDS | 15.0% |
| !! | ATTATTATAGTAGTATTATG+AGG | - | chr8_3:1409681-1409700 | Msa1268410:intron | 15.0% |
| !! | TGTATAAAAAACTATATTTC+AGG | - | chr8_3:1409841-1409860 | Msa1268410:intron | 15.0% |
| !! | TTCTTCAAGAAATATAATAA+AGG | + | chr8_3:1409987-1410006 | None:intergenic | 15.0% |
| !!! | GTTCTCTATTTTTTTTTTTT+TGG | - | chr8_3:1410341-1410360 | Msa1268410:intron | 15.0% |
| !!! | ATAGTATTATGTATTTTTTG+TGG | - | chr8_3:1410397-1410416 | Msa1268410:CDS | 15.0% |
| !!! | TAATGATTTTGAATTTTACT+AGG | - | chr8_3:1410424-1410443 | Msa1268410:CDS | 15.0% |
| !!! | ATATAGTATTGATTTATAGG+TGG | - | chr8_3:1408815-1408834 | Msa1268410:CDS | 20.0% |
| !! | ATTATAAAATAACCTGGTAA+AGG | + | chr8_3:1409118-1409137 | None:intergenic | 20.0% |
| !! | ATAATCAAGATATTAATGTG+TGG | - | chr8_3:1409157-1409176 | Msa1268410:intron | 20.0% |
| !! | AATTCACTTGAATAAATGAT+TGG | - | chr8_3:1409274-1409293 | Msa1268410:CDS | 20.0% |
| !! | CTAGATTAAGTTAAAGATTA+TGG | - | chr8_3:1409302-1409321 | Msa1268410:intron | 20.0% |
| !!! | TATTTTGAATTAGGATTCAT+TGG | - | chr8_3:1409709-1409728 | Msa1268410:intron | 20.0% |
| !! | TCATTCATTTCAATTGATAA+GGG | - | chr8_3:1410026-1410045 | Msa1268410:intron | 20.0% |
| !! | AATACAAGATTAACATAAAC+AGG | - | chr8_3:1410189-1410208 | Msa1268410:intron | 20.0% |
| !! | ATACAAGATTAACATAAACA+GGG | - | chr8_3:1410190-1410209 | Msa1268410:intron | 20.0% |
| !!! | ATGATGATATGTTTTTTATG+AGG | + | chr8_3:1410698-1410717 | None:intergenic | 20.0% |
| !!! | ATATAGTATTGATTTATAGG+TGG | - | chr8_3:1408815-1408834 | Msa1268410:CDS | 20.0% |
| !! | ATTATAAAATAACCTGGTAA+AGG | + | chr8_3:1409118-1409137 | None:intergenic | 20.0% |
| !! | ATAATCAAGATATTAATGTG+TGG | - | chr8_3:1409157-1409176 | Msa1268410:intron | 20.0% |
| !! | AATTCACTTGAATAAATGAT+TGG | - | chr8_3:1409274-1409293 | Msa1268410:CDS | 20.0% |
| !! | CTAGATTAAGTTAAAGATTA+TGG | - | chr8_3:1409302-1409321 | Msa1268410:intron | 20.0% |
| !!! | TATTTTGAATTAGGATTCAT+TGG | - | chr8_3:1409709-1409728 | Msa1268410:intron | 20.0% |
| !! | TCATTCATTTCAATTGATAA+GGG | - | chr8_3:1410026-1410045 | Msa1268410:intron | 20.0% |
| !! | AATACAAGATTAACATAAAC+AGG | - | chr8_3:1410189-1410208 | Msa1268410:intron | 20.0% |
| !! | ATACAAGATTAACATAAACA+GGG | - | chr8_3:1410190-1410209 | Msa1268410:intron | 20.0% |
| !!! | ATGATGATATGTTTTTTATG+AGG | + | chr8_3:1410698-1410717 | None:intergenic | 20.0% |
| !!! | TGCTTGTTATGATTATGAAA+GGG | + | chr8_3:1408578-1408597 | None:intergenic | 25.0% |
| !!! | TTGCTTGTTATGATTATGAA+AGG | + | chr8_3:1408579-1408598 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTGAGAAACAG+AGG | - | chr8_3:1409055-1409074 | Msa1268410:CDS | 25.0% |
| ! | TTATGTACAAAAATGTTTCG+TGG | - | chr8_3:1409195-1409214 | Msa1268410:intron | 25.0% |
| ! | CATAATCAACTGCAAAAATA+TGG | - | chr8_3:1409249-1409268 | Msa1268410:CDS | 25.0% |
| !!! | ATGTAGTTTGTTTTTGTCAA+AGG | - | chr8_3:1409331-1409350 | Msa1268410:intron | 25.0% |
| ! | TAGATTGTTACTAAATCATG+AGG | + | chr8_3:1409651-1409670 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTTGAATT+AGG | - | chr8_3:1409700-1409719 | Msa1268410:intron | 25.0% |
| ! | CATGATTTAATTACCTTGTT+TGG | + | chr8_3:1409765-1409784 | None:intergenic | 25.0% |
| !!! | AATTAATTTGTACCAAAGTG+TGG | + | chr8_3:1409939-1409958 | None:intergenic | 25.0% |
| ! | AGTGTTTGAATTATTATGGT+TGG | + | chr8_3:1409963-1409982 | None:intergenic | 25.0% |
| !!! | AGGAAGTGTTTGAATTATTA+TGG | + | chr8_3:1409967-1409986 | None:intergenic | 25.0% |
| ! | CTCATTCATTTCAATTGATA+AGG | - | chr8_3:1410025-1410044 | Msa1268410:intron | 25.0% |
| !!! | TGCTTGTTATGATTATGAAA+GGG | + | chr8_3:1408578-1408597 | None:intergenic | 25.0% |
| !!! | TTGCTTGTTATGATTATGAA+AGG | + | chr8_3:1408579-1408598 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTGAGAAACAG+AGG | - | chr8_3:1409055-1409074 | Msa1268410:CDS | 25.0% |
| ! | TTATGTACAAAAATGTTTCG+TGG | - | chr8_3:1409195-1409214 | Msa1268410:intron | 25.0% |
| ! | CATAATCAACTGCAAAAATA+TGG | - | chr8_3:1409249-1409268 | Msa1268410:CDS | 25.0% |
| !!! | ATGTAGTTTGTTTTTGTCAA+AGG | - | chr8_3:1409331-1409350 | Msa1268410:intron | 25.0% |
| ! | TAGATTGTTACTAAATCATG+AGG | + | chr8_3:1409651-1409670 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTTGAATT+AGG | - | chr8_3:1409700-1409719 | Msa1268410:intron | 25.0% |
| ! | CATGATTTAATTACCTTGTT+TGG | + | chr8_3:1409765-1409784 | None:intergenic | 25.0% |
| !!! | AATTAATTTGTACCAAAGTG+TGG | + | chr8_3:1409939-1409958 | None:intergenic | 25.0% |
| ! | AGTGTTTGAATTATTATGGT+TGG | + | chr8_3:1409963-1409982 | None:intergenic | 25.0% |
| !!! | AGGAAGTGTTTGAATTATTA+TGG | + | chr8_3:1409967-1409986 | None:intergenic | 25.0% |
| ! | CTCATTCATTTCAATTGATA+AGG | - | chr8_3:1410025-1410044 | Msa1268410:intron | 25.0% |
| TGTTATGATTATGAAAGGGT+TGG | + | chr8_3:1408574-1408593 | None:intergenic | 30.0% | |
| ! | TTTGGTTAATTTCTGAGAGA+GGG | + | chr8_3:1408604-1408623 | None:intergenic | 30.0% |
| AGAGTATGTTAAAGAAATCG+AGG | - | chr8_3:1408658-1408677 | Msa1268410:three_prime_UTR | 30.0% | |
| TGATTCCTTATAGAACCATT+TGG | + | chr8_3:1408883-1408902 | None:intergenic | 30.0% | |
| AAAACAGCTGTTGAATTATG+TGG | - | chr8_3:1408937-1408956 | Msa1268410:intron | 30.0% | |
| TTATATGTATTTCAGCTAGC+TGG | - | chr8_3:1409507-1409526 | Msa1268410:intron | 30.0% | |
| TATATGTATTTCAGCTAGCT+GGG | - | chr8_3:1409508-1409527 | Msa1268410:intron | 30.0% | |
| CATTTCAATTGATAAGGGTA+AGG | - | chr8_3:1410031-1410050 | Msa1268410:intron | 30.0% | |
| AAGAGTTATCAAACTTGAGA+GGG | + | chr8_3:1410100-1410119 | None:intergenic | 30.0% | |
| TAAGAGTTATCAAACTTGAG+AGG | + | chr8_3:1410101-1410120 | None:intergenic | 30.0% | |
| AAACAGGGAACTAATGAAAT+TGG | - | chr8_3:1410205-1410224 | Msa1268410:intron | 30.0% | |
| CATAGAGTTCAACATATTTG+CGG | + | chr8_3:1410289-1410308 | None:intergenic | 30.0% | |
| ATATGTTGAACTCTATGCTA+AGG | - | chr8_3:1410292-1410311 | Msa1268410:intron | 30.0% | |
| TGTTATGATTATGAAAGGGT+TGG | + | chr8_3:1408574-1408593 | None:intergenic | 30.0% | |
| ! | TTTGGTTAATTTCTGAGAGA+GGG | + | chr8_3:1408604-1408623 | None:intergenic | 30.0% |
| AGAGTATGTTAAAGAAATCG+AGG | - | chr8_3:1408658-1408677 | Msa1268410:three_prime_UTR | 30.0% | |
| TGATTCCTTATAGAACCATT+TGG | + | chr8_3:1408883-1408902 | None:intergenic | 30.0% | |
| AAAACAGCTGTTGAATTATG+TGG | - | chr8_3:1408937-1408956 | Msa1268410:intron | 30.0% | |
| TTATATGTATTTCAGCTAGC+TGG | - | chr8_3:1409507-1409526 | Msa1268410:intron | 30.0% | |
| TATATGTATTTCAGCTAGCT+GGG | - | chr8_3:1409508-1409527 | Msa1268410:intron | 30.0% | |
| CATTTCAATTGATAAGGGTA+AGG | - | chr8_3:1410031-1410050 | Msa1268410:intron | 30.0% | |
| AAGAGTTATCAAACTTGAGA+GGG | + | chr8_3:1410100-1410119 | None:intergenic | 30.0% | |
| TAAGAGTTATCAAACTTGAG+AGG | + | chr8_3:1410101-1410120 | None:intergenic | 30.0% | |
| AAACAGGGAACTAATGAAAT+TGG | - | chr8_3:1410205-1410224 | Msa1268410:intron | 30.0% | |
| CATAGAGTTCAACATATTTG+CGG | + | chr8_3:1410289-1410308 | None:intergenic | 30.0% | |
| ATATGTTGAACTCTATGCTA+AGG | - | chr8_3:1410292-1410311 | Msa1268410:intron | 30.0% | |
| ! | CTTTGGTTAATTTCTGAGAG+AGG | + | chr8_3:1408605-1408624 | None:intergenic | 35.0% |
| CATATTTAGCCATACTTGCA+AGG | + | chr8_3:1408628-1408647 | None:intergenic | 35.0% | |
| GTATGTTAAAGAAATCGAGG+AGG | - | chr8_3:1408661-1408680 | Msa1268410:three_prime_UTR | 35.0% | |
| GATATTAATGTGTGGAGTCA+TGG | - | chr8_3:1409165-1409184 | Msa1268410:intron | 35.0% | |
| ATATGTATTTCAGCTAGCTG+GGG | - | chr8_3:1409509-1409528 | Msa1268410:intron | 35.0% | |
| ATGTACTAGTACCTTTCTTC+CGG | + | chr8_3:1409580-1409599 | None:intergenic | 35.0% | |
| ! | TAATTACCTTGTTTGGCATC+TGG | + | chr8_3:1409758-1409777 | None:intergenic | 35.0% |
| ! | AAGAGAGATCTTTTATCGCA+TGG | - | chr8_3:1409876-1409895 | Msa1268410:intron | 35.0% |
| ! | AGAGAGATCTTTTATCGCAT+GGG | - | chr8_3:1409877-1409896 | Msa1268410:intron | 35.0% |
| AAAGATCGCTCTAACTTTGA+AGG | - | chr8_3:1410059-1410078 | Msa1268410:intron | 35.0% | |
| CACAAGAAACTCTCTGAATT+AGG | - | chr8_3:1410482-1410501 | Msa1268410:CDS | 35.0% | |
| TTATCGTTCTCAATTGGCTA+AGG | - | chr8_3:1410523-1410542 | Msa1268410:intron | 35.0% | |
| ! | CTTTGGTTAATTTCTGAGAG+AGG | + | chr8_3:1408605-1408624 | None:intergenic | 35.0% |
| CATATTTAGCCATACTTGCA+AGG | + | chr8_3:1408628-1408647 | None:intergenic | 35.0% | |
| GTATGTTAAAGAAATCGAGG+AGG | - | chr8_3:1408661-1408680 | Msa1268410:three_prime_UTR | 35.0% | |
| GATATTAATGTGTGGAGTCA+TGG | - | chr8_3:1409165-1409184 | Msa1268410:intron | 35.0% | |
| ATATGTATTTCAGCTAGCTG+GGG | - | chr8_3:1409509-1409528 | Msa1268410:intron | 35.0% | |
| ATGTACTAGTACCTTTCTTC+CGG | + | chr8_3:1409580-1409599 | None:intergenic | 35.0% | |
| ! | TAATTACCTTGTTTGGCATC+TGG | + | chr8_3:1409758-1409777 | None:intergenic | 35.0% |
| ! | AAGAGAGATCTTTTATCGCA+TGG | - | chr8_3:1409876-1409895 | Msa1268410:intron | 35.0% |
| ! | AGAGAGATCTTTTATCGCAT+GGG | - | chr8_3:1409877-1409896 | Msa1268410:intron | 35.0% |
| AAAGATCGCTCTAACTTTGA+AGG | - | chr8_3:1410059-1410078 | Msa1268410:intron | 35.0% | |
| CACAAGAAACTCTCTGAATT+AGG | - | chr8_3:1410482-1410501 | Msa1268410:CDS | 35.0% | |
| TTATCGTTCTCAATTGGCTA+AGG | - | chr8_3:1410523-1410542 | Msa1268410:intron | 35.0% | |
| TAACCAAAGCCTTGCAAGTA+TGG | - | chr8_3:1408616-1408635 | Msa1268410:three_prime_UTR | 40.0% | |
| ATTTATAGGTGGCATGATGC+TGG | - | chr8_3:1408826-1408845 | Msa1268410:CDS | 40.0% | |
| TACGACGCAAAAACAAGAAC+AGG | - | chr8_3:1408853-1408872 | Msa1268410:CDS | 40.0% | |
| ACGACGCAAAAACAAGAACA+GGG | - | chr8_3:1408854-1408873 | Msa1268410:CDS | 40.0% | |
| GAATTATGTGGTCAGTGAGA+CGG | - | chr8_3:1408949-1408968 | Msa1268410:intron | 40.0% | |
| TTGAGAAACAGAGGAAGTGA+AGG | - | chr8_3:1409064-1409083 | Msa1268410:CDS | 40.0% | |
| ACACCCCAAAGTTTCATATG+CGG | - | chr8_3:1409091-1409110 | Msa1268410:CDS | 40.0% | |
| AGGTCCGCATATGAAACTTT+GGG | + | chr8_3:1409098-1409117 | None:intergenic | 40.0% | |
| AAGGTCCGCATATGAAACTT+TGG | + | chr8_3:1409099-1409118 | None:intergenic | 40.0% | |
| CCAACTATTCACTTTGTTCC+CGG | - | chr8_3:1409558-1409577 | Msa1268410:intron | 40.0% | |
| TGTACTAGTACCTTTCTTCC+GGG | + | chr8_3:1409579-1409598 | None:intergenic | 40.0% | |
| TCATTGGAATCTCCACAAGA+AGG | - | chr8_3:1409725-1409744 | Msa1268410:intron | 40.0% | |
| AAAGACATTGTAGCTCTCTC+CGG | - | chr8_3:1409910-1409929 | Msa1268410:intron | 40.0% | |
| ! | GCTCTAACTTTGAAGGTCAA+TGG | - | chr8_3:1410066-1410085 | Msa1268410:intron | 40.0% |
| ATTGAAGCTTCCTACAGACA+AGG | - | chr8_3:1410241-1410260 | Msa1268410:CDS | 40.0% | |
| TCAACATATTTGCGGAATGC+AGG | + | chr8_3:1410281-1410300 | None:intergenic | 40.0% | |
| TCTGAATTAGGCTTCAATCC+CGG | - | chr8_3:1410494-1410513 | Msa1268410:CDS | 40.0% | |
| TGGCAGTTATCGTTCTCAAT+TGG | - | chr8_3:1410517-1410536 | Msa1268410:intron | 40.0% | |
| TAACCAAAGCCTTGCAAGTA+TGG | - | chr8_3:1408616-1408635 | Msa1268410:three_prime_UTR | 40.0% | |
| ATTTATAGGTGGCATGATGC+TGG | - | chr8_3:1408826-1408845 | Msa1268410:CDS | 40.0% | |
| TACGACGCAAAAACAAGAAC+AGG | - | chr8_3:1408853-1408872 | Msa1268410:CDS | 40.0% | |
| ACGACGCAAAAACAAGAACA+GGG | - | chr8_3:1408854-1408873 | Msa1268410:CDS | 40.0% | |
| GAATTATGTGGTCAGTGAGA+CGG | - | chr8_3:1408949-1408968 | Msa1268410:intron | 40.0% | |
| TTGAGAAACAGAGGAAGTGA+AGG | - | chr8_3:1409064-1409083 | Msa1268410:CDS | 40.0% | |
| ACACCCCAAAGTTTCATATG+CGG | - | chr8_3:1409091-1409110 | Msa1268410:CDS | 40.0% | |
| AGGTCCGCATATGAAACTTT+GGG | + | chr8_3:1409098-1409117 | None:intergenic | 40.0% | |
| AAGGTCCGCATATGAAACTT+TGG | + | chr8_3:1409099-1409118 | None:intergenic | 40.0% | |
| CCAACTATTCACTTTGTTCC+CGG | - | chr8_3:1409558-1409577 | Msa1268410:intron | 40.0% | |
| TGTACTAGTACCTTTCTTCC+GGG | + | chr8_3:1409579-1409598 | None:intergenic | 40.0% | |
| TCATTGGAATCTCCACAAGA+AGG | - | chr8_3:1409725-1409744 | Msa1268410:intron | 40.0% | |
| AAAGACATTGTAGCTCTCTC+CGG | - | chr8_3:1409910-1409929 | Msa1268410:intron | 40.0% | |
| ! | GCTCTAACTTTGAAGGTCAA+TGG | - | chr8_3:1410066-1410085 | Msa1268410:intron | 40.0% |
| ATTGAAGCTTCCTACAGACA+AGG | - | chr8_3:1410241-1410260 | Msa1268410:CDS | 40.0% | |
| TCAACATATTTGCGGAATGC+AGG | + | chr8_3:1410281-1410300 | None:intergenic | 40.0% | |
| TCTGAATTAGGCTTCAATCC+CGG | - | chr8_3:1410494-1410513 | Msa1268410:CDS | 40.0% | |
| TGGCAGTTATCGTTCTCAAT+TGG | - | chr8_3:1410517-1410536 | Msa1268410:intron | 40.0% | |
| TAGCCATACTTGCAAGGCTT+TGG | + | chr8_3:1408622-1408641 | None:intergenic | 45.0% | |
| TACGCTAATCGTAGCATGAG+AGG | + | chr8_3:1408731-1408750 | None:intergenic | 45.0% | |
| CGACGCAAAAACAAGAACAG+GGG | - | chr8_3:1408855-1408874 | Msa1268410:CDS | 45.0% | |
| GACGCAAAAACAAGAACAGG+GGG | - | chr8_3:1408856-1408875 | Msa1268410:CDS | 45.0% | |
| ! | GGGGTCCAAATGGTTCTATA+AGG | - | chr8_3:1408875-1408894 | Msa1268410:CDS | 45.0% |
| CTGAACCATGCTGCTAACAA+GGG | - | chr8_3:1408910-1408929 | Msa1268410:intron | 45.0% | |
| GGTCCGCATATGAAACTTTG+GGG | + | chr8_3:1409097-1409116 | None:intergenic | 45.0% | |
| TTCATATGCGGACCTTTACC+AGG | - | chr8_3:1409103-1409122 | Msa1268410:CDS | 45.0% | |
| TCCTCGCATGTGTGCTAAAA+AGG | - | chr8_3:1409451-1409470 | Msa1268410:CDS | 45.0% | |
| CCTCGCATGTGTGCTAAAAA+GGG | - | chr8_3:1409452-1409471 | Msa1268410:CDS | 45.0% | |
| CCGGGAACAAAGTGAATAGT+TGG | + | chr8_3:1409561-1409580 | None:intergenic | 45.0% | |
| TCACTTTGTTCCCGGAAGAA+AGG | - | chr8_3:1409566-1409585 | Msa1268410:intron | 45.0% | |
| ! | TACCTTGTTTGGCATCTGGA+AGG | + | chr8_3:1409754-1409773 | None:intergenic | 45.0% |
| ! | TCAACTAGAGCCTTGTCTGT+AGG | + | chr8_3:1410254-1410273 | None:intergenic | 45.0% |
| TTGAGAACGATAACTGCCAC+CGG | + | chr8_3:1410516-1410535 | None:intergenic | 45.0% | |
| TGAGCTCAAGTAAGTAACCC+AGG | + | chr8_3:1410586-1410605 | None:intergenic | 45.0% | |
| TAGCCATACTTGCAAGGCTT+TGG | + | chr8_3:1408622-1408641 | None:intergenic | 45.0% | |
| TACGCTAATCGTAGCATGAG+AGG | + | chr8_3:1408731-1408750 | None:intergenic | 45.0% | |
| CGACGCAAAAACAAGAACAG+GGG | - | chr8_3:1408855-1408874 | Msa1268410:CDS | 45.0% | |
| GACGCAAAAACAAGAACAGG+GGG | - | chr8_3:1408856-1408875 | Msa1268410:CDS | 45.0% | |
| ! | GGGGTCCAAATGGTTCTATA+AGG | - | chr8_3:1408875-1408894 | Msa1268410:CDS | 45.0% |
| CTGAACCATGCTGCTAACAA+GGG | - | chr8_3:1408910-1408929 | Msa1268410:intron | 45.0% | |
| GGTCCGCATATGAAACTTTG+GGG | + | chr8_3:1409097-1409116 | None:intergenic | 45.0% | |
| TTCATATGCGGACCTTTACC+AGG | - | chr8_3:1409103-1409122 | Msa1268410:CDS | 45.0% | |
| TCCTCGCATGTGTGCTAAAA+AGG | - | chr8_3:1409451-1409470 | Msa1268410:CDS | 45.0% | |
| CCTCGCATGTGTGCTAAAAA+GGG | - | chr8_3:1409452-1409471 | Msa1268410:CDS | 45.0% | |
| CCGGGAACAAAGTGAATAGT+TGG | + | chr8_3:1409561-1409580 | None:intergenic | 45.0% | |
| TCACTTTGTTCCCGGAAGAA+AGG | - | chr8_3:1409566-1409585 | Msa1268410:intron | 45.0% | |
| ! | TACCTTGTTTGGCATCTGGA+AGG | + | chr8_3:1409754-1409773 | None:intergenic | 45.0% |
| ! | TCAACTAGAGCCTTGTCTGT+AGG | + | chr8_3:1410254-1410273 | None:intergenic | 45.0% |
| TTGAGAACGATAACTGCCAC+CGG | + | chr8_3:1410516-1410535 | None:intergenic | 45.0% | |
| TGAGCTCAAGTAAGTAACCC+AGG | + | chr8_3:1410586-1410605 | None:intergenic | 45.0% | |
| !! | AAAATTAATTAAACAAATTA+AGG | + | chr8_3:1408981-1409000 | None:intergenic | 5.0% |
| !! | AAAATTAATTAAACAAATTA+AGG | + | chr8_3:1408981-1409000 | None:intergenic | 5.0% |
| ACAAGAACAGGGGGTCCAAA+TGG | - | chr8_3:1408865-1408884 | Msa1268410:CDS | 50.0% | |
| GCTGAACCATGCTGCTAACA+AGG | - | chr8_3:1408909-1408928 | Msa1268410:intron | 50.0% | |
| TCAAGCCCTTGTTAGCAGCA+TGG | + | chr8_3:1408918-1408937 | None:intergenic | 50.0% | |
| TTATGTGGTCAGTGAGACGG+TGG | - | chr8_3:1408952-1408971 | Msa1268410:intron | 50.0% | |
| !! | CCCTTTTTAGCACACATGCG+AGG | + | chr8_3:1409455-1409474 | None:intergenic | 50.0% |
| ATTTCAGCTAGCTGGGGTTG+TGG | - | chr8_3:1409515-1409534 | Msa1268410:intron | 50.0% | |
| TTGTACCAAAGTGTGGCCTC+CGG | + | chr8_3:1409932-1409951 | None:intergenic | 50.0% | |
| GAATTAGGCTTCAATCCCGG+TGG | - | chr8_3:1410497-1410516 | Msa1268410:CDS | 50.0% | |
| TGAGAACGATAACTGCCACC+GGG | + | chr8_3:1410515-1410534 | None:intergenic | 50.0% | |
| CAATTGGCTAAGGCAGCGTT+AGG | - | chr8_3:1410533-1410552 | Msa1268410:intron | 50.0% | |
| TGCCTCAACTGTTGTGATCC+TGG | - | chr8_3:1410565-1410584 | Msa1268410:intron | 50.0% | |
| GCCTCAACTGTTGTGATCCT+GGG | - | chr8_3:1410566-1410585 | Msa1268410:intron | 50.0% | |
| ACCCAGGATCACAACAGTTG+AGG | + | chr8_3:1410570-1410589 | None:intergenic | 50.0% | |
| ACAAGAACAGGGGGTCCAAA+TGG | - | chr8_3:1408865-1408884 | Msa1268410:CDS | 50.0% | |
| GCTGAACCATGCTGCTAACA+AGG | - | chr8_3:1408909-1408928 | Msa1268410:intron | 50.0% | |
| TCAAGCCCTTGTTAGCAGCA+TGG | + | chr8_3:1408918-1408937 | None:intergenic | 50.0% | |
| TTATGTGGTCAGTGAGACGG+TGG | - | chr8_3:1408952-1408971 | Msa1268410:intron | 50.0% | |
| !! | CCCTTTTTAGCACACATGCG+AGG | + | chr8_3:1409455-1409474 | None:intergenic | 50.0% |
| ATTTCAGCTAGCTGGGGTTG+TGG | - | chr8_3:1409515-1409534 | Msa1268410:intron | 50.0% | |
| TTGTACCAAAGTGTGGCCTC+CGG | + | chr8_3:1409932-1409951 | None:intergenic | 50.0% | |
| GAATTAGGCTTCAATCCCGG+TGG | - | chr8_3:1410497-1410516 | Msa1268410:CDS | 50.0% | |
| TGAGAACGATAACTGCCACC+GGG | + | chr8_3:1410515-1410534 | None:intergenic | 50.0% | |
| CAATTGGCTAAGGCAGCGTT+AGG | - | chr8_3:1410533-1410552 | Msa1268410:intron | 50.0% | |
| TGCCTCAACTGTTGTGATCC+TGG | - | chr8_3:1410565-1410584 | Msa1268410:intron | 50.0% | |
| GCCTCAACTGTTGTGATCCT+GGG | - | chr8_3:1410566-1410585 | Msa1268410:intron | 50.0% | |
| ACCCAGGATCACAACAGTTG+AGG | + | chr8_3:1410570-1410589 | None:intergenic | 50.0% | |
| GTTGTGGCTGTAGAGGTCAC+TGG | - | chr8_3:1409531-1409550 | Msa1268410:intron | 55.0% | |
| TCTGGAAGGCGACCTTCTTG+TGG | + | chr8_3:1409740-1409759 | None:intergenic | 55.0% | |
| CGCCTTCCAGATGCCAAACA+AGG | - | chr8_3:1409749-1409768 | Msa1268410:intron | 55.0% | |
| GACATTGTAGCTCTCTCCGG+AGG | - | chr8_3:1409913-1409932 | Msa1268410:intron | 55.0% | |
| GGCTAAGGCAGCGTTAGGAA+TGG | - | chr8_3:1410538-1410557 | Msa1268410:intron | 55.0% | |
| GTTGTGGCTGTAGAGGTCAC+TGG | - | chr8_3:1409531-1409550 | Msa1268410:intron | 55.0% | |
| TCTGGAAGGCGACCTTCTTG+TGG | + | chr8_3:1409740-1409759 | None:intergenic | 55.0% | |
| CGCCTTCCAGATGCCAAACA+AGG | - | chr8_3:1409749-1409768 | Msa1268410:intron | 55.0% | |
| GACATTGTAGCTCTCTCCGG+AGG | - | chr8_3:1409913-1409932 | Msa1268410:intron | 55.0% | |
| GGCTAAGGCAGCGTTAGGAA+TGG | - | chr8_3:1410538-1410557 | Msa1268410:intron | 55.0% | |
| AGCTGGGGTTGTGGCTGTAG+AGG | - | chr8_3:1409524-1409543 | Msa1268410:intron | 60.0% | |
| GTGGCTGTAGAGGTCACTGG+TGG | - | chr8_3:1409534-1409553 | Msa1268410:intron | 60.0% | |
| TCTCTCCGGAGGCCACACTT+TGG | - | chr8_3:1409924-1409943 | Msa1268410:intron | 60.0% | |
| AGCTGGGGTTGTGGCTGTAG+AGG | - | chr8_3:1409524-1409543 | Msa1268410:intron | 60.0% | |
| GTGGCTGTAGAGGTCACTGG+TGG | - | chr8_3:1409534-1409553 | Msa1268410:intron | 60.0% | |
| TCTCTCCGGAGGCCACACTT+TGG | - | chr8_3:1409924-1409943 | Msa1268410:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 1408539 | 1410813 | 1408539 | ID=Msa1268410;Name=Msa1268410 |
| chr8_3 | mRNA | 1408539 | 1410813 | 1408539 | ID=Msa1268410-mRNA-1;Parent=Msa1268410;Name=Msa1268410-mRNA-1;_AED=0.14;_eAED=0.14;_QI=96|1|1|1|1|1|9|191|281 |
| chr8_3 | exon | 1408539 | 1408906 | 1408539 | ID=Msa1268410-mRNA-1:exon:400;Parent=Msa1268410-mRNA-1 |
| chr8_3 | exon | 1409039 | 1409141 | 1409039 | ID=Msa1268410-mRNA-1:exon:399;Parent=Msa1268410-mRNA-1 |
| chr8_3 | exon | 1409226 | 1409305 | 1409226 | ID=Msa1268410-mRNA-1:exon:398;Parent=Msa1268410-mRNA-1 |
| chr8_3 | exon | 1409407 | 1409489 | 1409407 | ID=Msa1268410-mRNA-1:exon:397;Parent=Msa1268410-mRNA-1 |
| chr8_3 | exon | 1409582 | 1409630 | 1409582 | ID=Msa1268410-mRNA-1:exon:396;Parent=Msa1268410-mRNA-1 |
| chr8_3 | exon | 1409765 | 1409830 | 1409765 | ID=Msa1268410-mRNA-1:exon:395;Parent=Msa1268410-mRNA-1 |
| chr8_3 | exon | 1410228 | 1410277 | 1410228 | ID=Msa1268410-mRNA-1:exon:394;Parent=Msa1268410-mRNA-1 |
| chr8_3 | exon | 1410394 | 1410518 | 1410394 | ID=Msa1268410-mRNA-1:exon:393;Parent=Msa1268410-mRNA-1 |
| chr8_3 | exon | 1410605 | 1410813 | 1410605 | ID=Msa1268410-mRNA-1:exon:392;Parent=Msa1268410-mRNA-1 |
| chr8_3 | five_prime_UTR | 1410718 | 1410813 | 1410718 | ID=Msa1268410-mRNA-1:five_prime_utr;Parent=Msa1268410-mRNA-1 |
| chr8_3 | CDS | 1410605 | 1410717 | 1410605 | ID=Msa1268410-mRNA-1:cds;Parent=Msa1268410-mRNA-1 |
| chr8_3 | CDS | 1410394 | 1410518 | 1410394 | ID=Msa1268410-mRNA-1:cds;Parent=Msa1268410-mRNA-1 |
| chr8_3 | CDS | 1410228 | 1410277 | 1410228 | ID=Msa1268410-mRNA-1:cds;Parent=Msa1268410-mRNA-1 |
| chr8_3 | CDS | 1409765 | 1409830 | 1409765 | ID=Msa1268410-mRNA-1:cds;Parent=Msa1268410-mRNA-1 |
| chr8_3 | CDS | 1409582 | 1409630 | 1409582 | ID=Msa1268410-mRNA-1:cds;Parent=Msa1268410-mRNA-1 |
| chr8_3 | CDS | 1409407 | 1409489 | 1409407 | ID=Msa1268410-mRNA-1:cds;Parent=Msa1268410-mRNA-1 |
| chr8_3 | CDS | 1409226 | 1409305 | 1409226 | ID=Msa1268410-mRNA-1:cds;Parent=Msa1268410-mRNA-1 |
| chr8_3 | CDS | 1409039 | 1409141 | 1409039 | ID=Msa1268410-mRNA-1:cds;Parent=Msa1268410-mRNA-1 |
| chr8_3 | CDS | 1408730 | 1408906 | 1408730 | ID=Msa1268410-mRNA-1:cds;Parent=Msa1268410-mRNA-1 |
| chr8_3 | three_prime_UTR | 1408539 | 1408729 | 1408539 | ID=Msa1268410-mRNA-1:three_prime_utr;Parent=Msa1268410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
