Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800200 | XP_003612205.2 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800200 | sp|Q42564|APX3_ARATH | 73.745 | 259 | 68 | 0 | 1 | 259 | 1 | 259 | 6.28e-143 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800200 | G7JXJ2 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0800200 | 0.839992 | 1.137060e-57 | -8.615850e-47 |
| Msa0064120 | Msa0800200 | 0.805887 | 1.074547e-49 | -8.615850e-47 |
| Msa0071850 | Msa0800200 | 0.804404 | 2.195451e-49 | -8.615850e-47 |
| Msa0108880 | Msa0800200 | 0.807255 | 5.526617e-50 | -8.615850e-47 |
| Msa0609300 | Msa0800200 | 0.849297 | 3.539835e-60 | -8.615850e-47 |
| Msa0691910 | Msa0800200 | 0.843773 | 1.140122e-58 | -8.615850e-47 |
| Msa0759010 | Msa0800200 | 0.971011 | 1.699344e-132 | -8.615850e-47 |
| Msa0782750 | Msa0800200 | 0.815769 | 7.802231e-52 | -8.615850e-47 |
| Msa0800140 | Msa0800200 | 0.996121 | 1.204965e-223 | -8.615850e-47 |
| Msa0800170 | Msa0800200 | 0.990849 | 1.246258e-184 | -8.615850e-47 |
| Msa0800200 | Msa0820380 | 0.807783 | 4.271089e-50 | -8.615850e-47 |
| Msa0800200 | Msa1014320 | 0.800762 | 1.237580e-48 | -8.615850e-47 |
| Msa0800200 | Msa1268380 | 0.993519 | 2.674621e-200 | -8.615850e-47 |
| Msa0800200 | Msa1268410 | 0.989795 | 1.105593e-179 | -8.615850e-47 |
| Msa0800200 | Msa1268440 | 0.969855 | 9.694694e-131 | -8.615850e-47 |
| Msa0125210 | Msa0800200 | 0.824124 | 9.568556e-54 | -8.615850e-47 |
| Msa0155180 | Msa0800200 | 0.832109 | 1.140297e-55 | -8.615850e-47 |
| Msa0432320 | Msa0800200 | 0.809180 | 2.148844e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800200 | MtrunA17_Chr5g0405731 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Msa0800200 | MtrunA17_Chr4g0037131 | 72.043 | 279 | 73 | 1 | 6 | 279 | 7 | 285 | 7.58e-148 | 415 |
| Msa0800200 | MtrunA17_Chr4g0030171 | 64.583 | 240 | 84 | 1 | 6 | 244 | 8 | 247 | 1.60e-113 | 327 |
| Msa0800200 | MtrunA17_Chr3g0124821 | 49.425 | 261 | 105 | 6 | 13 | 246 | 100 | 360 | 1.52e-76 | 238 |
| Msa0800200 | MtrunA17_Chr3g0137751 | 37.860 | 243 | 127 | 6 | 11 | 243 | 86 | 314 | 4.01e-41 | 144 |
| Msa0800200 | MtrunA17_Chr7g0225221 | 29.278 | 263 | 141 | 10 | 35 | 256 | 60 | 318 | 3.14e-18 | 83.2 |
| Msa0800200 | MtrunA17_Chr4g0053871 | 28.854 | 253 | 135 | 7 | 32 | 243 | 59 | 307 | 1.17e-16 | 78.6 |
| Msa0800200 | MtrunA17_Chr1g0157051 | 29.225 | 284 | 133 | 13 | 22 | 253 | 46 | 313 | 2.03e-16 | 77.8 |
| Msa0800200 | MtrunA17_Chr4g0013721 | 27.208 | 283 | 136 | 9 | 15 | 242 | 113 | 380 | 7.75e-15 | 73.9 |
| Msa0800200 | MtrunA17_Chr6g0467161 | 27.203 | 261 | 133 | 10 | 31 | 247 | 76 | 323 | 1.16e-14 | 73.2 |
| Msa0800200 | MtrunA17_Chr7g0258811 | 24.719 | 267 | 151 | 9 | 22 | 242 | 91 | 353 | 1.78e-13 | 69.7 |
| Msa0800200 | MtrunA17_Chr5g0426581 | 31.928 | 166 | 79 | 5 | 27 | 158 | 113 | 278 | 1.20e-12 | 67.4 |
| Msa0800200 | MtrunA17_Chr3g0129061 | 26.087 | 253 | 133 | 9 | 34 | 242 | 62 | 304 | 2.78e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800200 | AT4G35000.1 | 73.745 | 259 | 68 | 0 | 1 | 259 | 1 | 259 | 6.39e-144 | 405 |
| Msa0800200 | AT4G35970.1 | 66.788 | 274 | 90 | 1 | 6 | 279 | 5 | 277 | 2.67e-135 | 384 |
| Msa0800200 | AT4G35970.2 | 72.018 | 218 | 60 | 1 | 6 | 223 | 5 | 221 | 3.04e-115 | 331 |
| Msa0800200 | AT3G09640.2 | 63.180 | 239 | 88 | 0 | 6 | 244 | 9 | 247 | 3.75e-109 | 316 |
| Msa0800200 | AT3G09640.1 | 63.180 | 239 | 88 | 0 | 6 | 244 | 9 | 247 | 3.75e-109 | 316 |
| Msa0800200 | AT1G07890.2 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800200 | AT1G07890.8 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800200 | AT1G07890.4 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800200 | AT1G07890.7 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800200 | AT1G07890.1 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800200 | AT1G07890.3 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800200 | AT1G07890.5 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800200 | AT1G07890.6 | 59.583 | 240 | 96 | 1 | 6 | 244 | 8 | 247 | 3.81e-104 | 303 |
| Msa0800200 | AT4G08390.2 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa0800200 | AT4G08390.5 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa0800200 | AT4G08390.1 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa0800200 | AT4G08390.3 | 49.042 | 261 | 106 | 6 | 13 | 246 | 105 | 365 | 1.27e-77 | 240 |
| Msa0800200 | AT1G77490.2 | 49.042 | 261 | 106 | 6 | 13 | 246 | 85 | 345 | 1.24e-75 | 237 |
| Msa0800200 | AT1G77490.1 | 49.042 | 261 | 106 | 6 | 13 | 246 | 85 | 345 | 1.58e-75 | 236 |
| Msa0800200 | AT4G08390.4 | 44.828 | 261 | 91 | 7 | 13 | 246 | 106 | 340 | 2.68e-64 | 205 |
| Msa0800200 | AT4G32320.1 | 37.288 | 236 | 124 | 6 | 18 | 243 | 102 | 323 | 1.96e-39 | 140 |
| Msa0800200 | AT4G17690.1 | 37.019 | 208 | 85 | 8 | 72 | 243 | 108 | 305 | 2.88e-22 | 94.7 |
| Msa0800200 | AT4G16270.1 | 30.496 | 282 | 123 | 12 | 23 | 249 | 73 | 336 | 2.09e-21 | 92.8 |
| Msa0800200 | AT1G49570.1 | 27.857 | 280 | 136 | 9 | 22 | 247 | 70 | 337 | 5.62e-19 | 85.9 |
| Msa0800200 | AT4G30170.1 | 30.620 | 258 | 127 | 10 | 31 | 243 | 58 | 308 | 2.79e-16 | 77.8 |
| Msa0800200 | AT4G09010.2 | 34.375 | 160 | 71 | 5 | 32 | 157 | 49 | 208 | 1.10e-15 | 75.9 |
| Msa0800200 | AT4G09010.1 | 34.375 | 160 | 71 | 5 | 32 | 157 | 114 | 273 | 2.73e-15 | 75.5 |
| Msa0800200 | AT5G14130.1 | 27.027 | 259 | 143 | 8 | 31 | 247 | 63 | 317 | 3.00e-15 | 75.1 |
| Msa0800200 | AT5G14130.2 | 27.027 | 259 | 143 | 8 | 31 | 247 | 104 | 358 | 5.04e-15 | 74.7 |
| Msa0800200 | AT4G09010.3 | 34.375 | 160 | 71 | 5 | 32 | 157 | 161 | 320 | 7.14e-15 | 74.3 |
| Msa0800200 | AT4G37530.1 | 26.966 | 267 | 139 | 9 | 32 | 249 | 59 | 318 | 2.74e-14 | 72.4 |
| Msa0800200 | AT5G42180.1 | 28.364 | 275 | 132 | 10 | 22 | 245 | 45 | 305 | 3.65e-14 | 71.6 |
| Msa0800200 | AT4G37520.1 | 26.592 | 267 | 140 | 9 | 32 | 249 | 59 | 318 | 5.37e-13 | 68.6 |
| Msa0800200 | AT3G49960.1 | 28.352 | 261 | 131 | 9 | 32 | 243 | 59 | 312 | 9.05e-13 | 67.8 |
| Msa0800200 | AT4G37530.2 | 32.022 | 178 | 99 | 7 | 32 | 191 | 59 | 232 | 2.06e-12 | 66.2 |
| Msa0800200 | AT5G17820.1 | 26.296 | 270 | 134 | 12 | 10 | 230 | 29 | 282 | 2.16e-12 | 66.6 |
| Msa0800200 | AT5G17820.2 | 26.296 | 270 | 134 | 12 | 10 | 230 | 82 | 335 | 7.29e-12 | 65.5 |
| Msa0800200 | AT5G15180.1 | 26.937 | 271 | 137 | 9 | 26 | 247 | 58 | 316 | 9.22e-12 | 65.1 |
Find 71 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAGGGAACTAATGAAAT+TGG | 0.251753 | 5_3:-13600547 | Msa0800200:intron |
| TGCCTCAACTGTTGTGATCC+TGG | 0.267857 | 5_3:-13600185 | Msa0800200:CDS |
| TAACCAAAGCCTTGCAAGTA+TGG | 0.276478 | 5_3:-13602137 | Msa0800200:exon |
| CATGATTTAATTACCTTGTT+TGG | 0.286806 | 5_3:+13600991 | None:intergenic |
| CACAAGAAACTCTCTGAATT+AGG | 0.339734 | 5_3:-13600268 | Msa0800200:CDS |
| ATGTACTAGTACCTTTCTTC+CGG | 0.351786 | 5_3:+13601176 | None:intergenic |
| TAGCCATACTTGCAAGGCTT+TGG | 0.388173 | 5_3:+13602134 | None:intergenic |
| CCAACTATTCACTTTGTTCC+CGG | 0.389997 | 5_3:-13601195 | Msa0800200:CDS |
| AGGTCCGCATATGAAACTTT+GGG | 0.390870 | 5_3:+13601658 | None:intergenic |
| TTATATGTATTTCAGCTAGC+TGG | 0.393811 | 5_3:-13601246 | Msa0800200:intron |
| TAATTACCTTGTTTGGCATC+TGG | 0.400655 | 5_3:+13600998 | None:intergenic |
| TGATTCCTTATAGAACCATT+TGG | 0.401526 | 5_3:+13601873 | None:intergenic |
| GCCTCAACTGTTGTGATCCT+GGG | 0.428816 | 5_3:-13600184 | Msa0800200:CDS |
| AAAGATCGCTCTAACTTTGA+AGG | 0.430021 | 5_3:-13600693 | Msa0800200:CDS |
| AAGGTCCGCATATGAAACTT+TGG | 0.433809 | 5_3:+13601657 | None:intergenic |
| TGTACTAGTACCTTTCTTCC+GGG | 0.435662 | 5_3:+13601177 | None:intergenic |
| TGGCAGTTATCGTTCTCAAT+TGG | 0.438208 | 5_3:-13600233 | Msa0800200:CDS |
| CATAGAGTTCAACATATTTG+CGG | 0.439517 | 5_3:+13600466 | None:intergenic |
| TCAACATATTTGCGGAATGC+AGG | 0.460562 | 5_3:+13600474 | None:intergenic |
| TCACTTTGTTCCCGGAAGAA+AGG | 0.460671 | 5_3:-13601187 | Msa0800200:intron |
| TATATGTATTTCAGCTAGCT+GGG | 0.463788 | 5_3:-13601245 | Msa0800200:intron |
| TTGCTTGTTATGATTATGAA+AGG | 0.466835 | 5_3:+13602177 | None:intergenic |
| CAATTGGCTAAGGCAGCGTT+AGG | 0.473147 | 5_3:-13600217 | Msa0800200:CDS |
| GTTGTGGCTGTAGAGGTCAC+TGG | 0.475048 | 5_3:-13601222 | Msa0800200:CDS |
| AAAACAGCTGTTGAATTATG+TGG | 0.483315 | 5_3:-13601816 | Msa0800200:intron |
| CATATTTAGCCATACTTGCA+AGG | 0.494767 | 5_3:+13602128 | None:intergenic |
| AGCTGGGGTTGTGGCTGTAG+AGG | 0.496133 | 5_3:-13601229 | Msa0800200:CDS |
| GCTCTAACTTTGAAGGTCAA+TGG | 0.497264 | 5_3:-13600686 | Msa0800200:CDS |
| GGGGTCCAAATGGTTCTATA+AGG | 0.497436 | 5_3:-13601878 | Msa0800200:CDS |
| CCGGGAACAAAGTGAATAGT+TGG | 0.498623 | 5_3:+13601195 | None:intergenic |
| GCTGAACCATGCTGCTAACA+AGG | 0.508818 | 5_3:-13601844 | Msa0800200:CDS |
| ATTTCAGCTAGCTGGGGTTG+TGG | 0.511946 | 5_3:-13601238 | Msa0800200:intron |
| ATTATAAAATAACCTGGTAA+AGG | 0.515916 | 5_3:+13601638 | None:intergenic |
| TTCATATGCGGACCTTTACC+AGG | 0.516618 | 5_3:-13601650 | Msa0800200:intron |
| TCTGGAAGGCGACCTTCTTG+TGG | 0.517530 | 5_3:+13601016 | None:intergenic |
| TTGAGAAACAGAGGAAGTGA+AGG | 0.521165 | 5_3:-13601689 | Msa0800200:intron |
| TTTGGTTAATTTCTGAGAGA+GGG | 0.530694 | 5_3:+13602152 | None:intergenic |
| TCAAGCCCTTGTTAGCAGCA+TGG | 0.531740 | 5_3:+13601838 | None:intergenic |
| ATATGTTGAACTCTATGCTA+AGG | 0.543090 | 5_3:-13600460 | Msa0800200:intron |
| TTGTACCAAAGTGTGGCCTC+CGG | 0.545189 | 5_3:+13600824 | None:intergenic |
| AAAGACATTGTAGCTCTCTC+CGG | 0.548124 | 5_3:-13600843 | Msa0800200:CDS |
| CGCCTTCCAGATGCCAAACA+AGG | 0.549529 | 5_3:-13601004 | Msa0800200:intron |
| TTATCGTTCTCAATTGGCTA+AGG | 0.549693 | 5_3:-13600227 | Msa0800200:CDS |
| TGCTTGTTATGATTATGAAA+GGG | 0.553361 | 5_3:+13602178 | None:intergenic |
| ATTTATAGGTGGCATGATGC+TGG | 0.555051 | 5_3:-13601927 | Msa0800200:intron |
| TACCTTGTTTGGCATCTGGA+AGG | 0.559846 | 5_3:+13601002 | None:intergenic |
| CTTTGGTTAATTTCTGAGAG+AGG | 0.565568 | 5_3:+13602151 | None:intergenic |
| AATTAATTTGTACCAAAGTG+TGG | 0.573092 | 5_3:+13600817 | None:intergenic |
| GGCTAAGGCAGCGTTAGGAA+TGG | 0.573545 | 5_3:-13600212 | Msa0800200:CDS |
| TAAGAGTTATCAAACTTGAG+AGG | 0.573775 | 5_3:+13600654 | None:intergenic |
| TGTTATGATTATGAAAGGGT+TGG | 0.578122 | 5_3:+13602182 | None:intergenic |
| TTGAGAACGATAACTGCCAC+CGG | 0.582999 | 5_3:+13600237 | None:intergenic |
| AAGAGTTATCAAACTTGAGA+GGG | 0.589980 | 5_3:+13600655 | None:intergenic |
| TCTCTCCGGAGGCCACACTT+TGG | 0.591661 | 5_3:-13600829 | Msa0800200:intron |
| TCTGAATTAGGCTTCAATCC+CGG | 0.595170 | 5_3:-13600256 | Msa0800200:CDS |
| TACGCTAATCGTAGCATGAG+AGG | 0.599636 | 5_3:+13602025 | None:intergenic |
| GGTCCGCATATGAAACTTTG+GGG | 0.601066 | 5_3:+13601659 | None:intergenic |
| TCAACTAGAGCCTTGTCTGT+AGG | 0.607702 | 5_3:+13600501 | None:intergenic |
| ATTGAAGCTTCCTACAGACA+AGG | 0.615401 | 5_3:-13600511 | Msa0800200:CDS |
| CTGAACCATGCTGCTAACAA+GGG | 0.615953 | 5_3:-13601843 | Msa0800200:CDS |
| GACATTGTAGCTCTCTCCGG+AGG | 0.618468 | 5_3:-13600840 | Msa0800200:CDS |
| TCATTGGAATCTCCACAAGA+AGG | 0.637304 | 5_3:-13601028 | Msa0800200:CDS |
| ACCCAGGATCACAACAGTTG+AGG | 0.637431 | 5_3:+13600183 | None:intergenic |
| ATATGTATTTCAGCTAGCTG+GGG | 0.644095 | 5_3:-13601244 | Msa0800200:intron |
| TGAGCTCAAGTAAGTAACCC+AGG | 0.647120 | 5_3:+13600167 | None:intergenic |
| AGAGTATGTTAAAGAAATCG+AGG | 0.648519 | 5_3:-13602095 | Msa0800200:CDS |
| ACACCCCAAAGTTTCATATG+CGG | 0.685445 | 5_3:-13601662 | Msa0800200:CDS |
| TGAGAACGATAACTGCCACC+GGG | 0.688112 | 5_3:+13600238 | None:intergenic |
| GTGGCTGTAGAGGTCACTGG+TGG | 0.707904 | 5_3:-13601219 | Msa0800200:CDS |
| GAATTAGGCTTCAATCCCGG+TGG | 0.713172 | 5_3:-13600253 | Msa0800200:CDS |
| GTATGTTAAAGAAATCGAGG+AGG | 0.749911 | 5_3:-13602092 | Msa0800200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATATAGTATTGATTTAT+AGG | - | chr5_3:13600232-13600251 | Msa0800200:CDS | 10.0% |
| !! | AAAAATATTATAAAATAACC+TGG | + | chr5_3:13600544-13600563 | None:intergenic | 10.0% |
| !!! | TCTCTATTTTTTTTTTTTTT+TGG | - | chr5_3:13601764-13601783 | Msa0800200:intron | 10.0% |
| !!! | AATATATAGTATTGATTTAT+AGG | - | chr5_3:13600232-13600251 | Msa0800200:CDS | 10.0% |
| !! | AAAAATATTATAAAATAACC+TGG | + | chr5_3:13600544-13600563 | None:intergenic | 10.0% |
| !!! | TCTCTATTTTTTTTTTTTTT+TGG | - | chr5_3:13601764-13601783 | Msa0800200:intron | 10.0% |
| !! | TATGTATATGTTATAGTAAA+AGG | + | chr5_3:13600204-13600223 | None:intergenic | 15.0% |
| !! | AAGATTAATAAGCAAAAAAT+TGG | + | chr5_3:13600442-13600461 | None:intergenic | 15.0% |
| !!! | TTAATTCATATTCAATTTTG+TGG | + | chr5_3:13600798-13600817 | None:intergenic | 15.0% |
| !! | ATTAATCATGTGTAAAAATA+TGG | + | chr5_3:13600848-13600867 | None:intergenic | 15.0% |
| !!! | TATTTTTACACATGATTAAT+CGG | - | chr5_3:13600848-13600867 | Msa0800200:CDS | 15.0% |
| !! | ATTATTATAGTAGTATTATG+AGG | - | chr5_3:13601101-13601120 | Msa0800200:intron | 15.0% |
| !! | TGTATAAAAAACTATATTTC+AGG | - | chr5_3:13601261-13601280 | Msa0800200:intron | 15.0% |
| !! | TTCTTCAAGAAATATAATAA+AGG | + | chr5_3:13601407-13601426 | None:intergenic | 15.0% |
| !!! | ATAGTATTATGTATTTTTTG+TGG | - | chr5_3:13601820-13601839 | Msa0800200:CDS | 15.0% |
| !!! | TAATGATTTTGAATTTTACT+AGG | - | chr5_3:13601847-13601866 | Msa0800200:CDS | 15.0% |
| !! | TATGTATATGTTATAGTAAA+AGG | + | chr5_3:13600204-13600223 | None:intergenic | 15.0% |
| !! | AAGATTAATAAGCAAAAAAT+TGG | + | chr5_3:13600442-13600461 | None:intergenic | 15.0% |
| !!! | TTAATTCATATTCAATTTTG+TGG | + | chr5_3:13600798-13600817 | None:intergenic | 15.0% |
| !! | ATTAATCATGTGTAAAAATA+TGG | + | chr5_3:13600848-13600867 | None:intergenic | 15.0% |
| !!! | TATTTTTACACATGATTAAT+CGG | - | chr5_3:13600848-13600867 | Msa0800200:CDS | 15.0% |
| !! | ATTATTATAGTAGTATTATG+AGG | - | chr5_3:13601101-13601120 | Msa0800200:intron | 15.0% |
| !! | TGTATAAAAAACTATATTTC+AGG | - | chr5_3:13601261-13601280 | Msa0800200:intron | 15.0% |
| !! | TTCTTCAAGAAATATAATAA+AGG | + | chr5_3:13601407-13601426 | None:intergenic | 15.0% |
| !!! | ATAGTATTATGTATTTTTTG+TGG | - | chr5_3:13601820-13601839 | Msa0800200:CDS | 15.0% |
| !!! | TAATGATTTTGAATTTTACT+AGG | - | chr5_3:13601847-13601866 | Msa0800200:CDS | 15.0% |
| !!! | ATATAGTATTGATTTATAGG+TGG | - | chr5_3:13600235-13600254 | Msa0800200:CDS | 20.0% |
| !! | ATTATAAAATAACCTGGTAA+AGG | + | chr5_3:13600538-13600557 | None:intergenic | 20.0% |
| !! | AATTCACTTGAATAAATGAT+TGG | - | chr5_3:13600694-13600713 | Msa0800200:CDS | 20.0% |
| !! | CTAGATTAAGTTAAAGATTA+TGG | - | chr5_3:13600722-13600741 | Msa0800200:intron | 20.0% |
| !!! | TATTTTGAATTAGGATTCAT+TGG | - | chr5_3:13601129-13601148 | Msa0800200:intron | 20.0% |
| !! | TCATTCATTTCAATTGATAA+GGG | - | chr5_3:13601447-13601466 | Msa0800200:intron | 20.0% |
| !! | AATACAAGATTAACATAAAC+AGG | - | chr5_3:13601610-13601629 | Msa0800200:intron | 20.0% |
| !! | ATACAAGATTAACATAAACA+GGG | - | chr5_3:13601611-13601630 | Msa0800200:intron | 20.0% |
| !!! | ATGATGATATGTTTTTTATG+AGG | + | chr5_3:13602121-13602140 | None:intergenic | 20.0% |
| !!! | ATATAGTATTGATTTATAGG+TGG | - | chr5_3:13600235-13600254 | Msa0800200:CDS | 20.0% |
| !! | ATTATAAAATAACCTGGTAA+AGG | + | chr5_3:13600538-13600557 | None:intergenic | 20.0% |
| !! | AATTCACTTGAATAAATGAT+TGG | - | chr5_3:13600694-13600713 | Msa0800200:CDS | 20.0% |
| !! | CTAGATTAAGTTAAAGATTA+TGG | - | chr5_3:13600722-13600741 | Msa0800200:intron | 20.0% |
| !!! | TATTTTGAATTAGGATTCAT+TGG | - | chr5_3:13601129-13601148 | Msa0800200:intron | 20.0% |
| !! | TCATTCATTTCAATTGATAA+GGG | - | chr5_3:13601447-13601466 | Msa0800200:intron | 20.0% |
| !! | AATACAAGATTAACATAAAC+AGG | - | chr5_3:13601610-13601629 | Msa0800200:intron | 20.0% |
| !! | ATACAAGATTAACATAAACA+GGG | - | chr5_3:13601611-13601630 | Msa0800200:intron | 20.0% |
| !!! | ATGATGATATGTTTTTTATG+AGG | + | chr5_3:13602121-13602140 | None:intergenic | 20.0% |
| !!! | TGCTTGTTATGATTATGAAA+GGG | + | chr5_3:13599998-13600017 | None:intergenic | 25.0% |
| !!! | TTGCTTGTTATGATTATGAA+AGG | + | chr5_3:13599999-13600018 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTGAGAAACAG+AGG | - | chr5_3:13600475-13600494 | Msa0800200:CDS | 25.0% |
| ! | ATAATCAAGATATTAACGTG+TGG | - | chr5_3:13600577-13600596 | Msa0800200:intron | 25.0% |
| ! | TTATGTACAAAAATGTTTCG+TGG | - | chr5_3:13600615-13600634 | Msa0800200:intron | 25.0% |
| ! | CATAATCAACTGCAAAAATA+TGG | - | chr5_3:13600669-13600688 | Msa0800200:CDS | 25.0% |
| !!! | ATGTAGTTTGTTTTTGTCAA+AGG | - | chr5_3:13600751-13600770 | Msa0800200:intron | 25.0% |
| ! | TAGATTGTTACTAAATCATG+AGG | + | chr5_3:13601071-13601090 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTTGAATT+AGG | - | chr5_3:13601120-13601139 | Msa0800200:intron | 25.0% |
| ! | CATGATTTAATTACCTTGTT+TGG | + | chr5_3:13601185-13601204 | None:intergenic | 25.0% |
| !!! | AATTAATTTGTACCAAAGTG+TGG | + | chr5_3:13601359-13601378 | None:intergenic | 25.0% |
| ! | AGTGTTTGAATTATTATGGT+TGG | + | chr5_3:13601383-13601402 | None:intergenic | 25.0% |
| !!! | AGGAAGTGTTTGAATTATTA+TGG | + | chr5_3:13601387-13601406 | None:intergenic | 25.0% |
| ! | CTCATTCATTTCAATTGATA+AGG | - | chr5_3:13601446-13601465 | Msa0800200:intron | 25.0% |
| !!! | TGCTTGTTATGATTATGAAA+GGG | + | chr5_3:13599998-13600017 | None:intergenic | 25.0% |
| !!! | TTGCTTGTTATGATTATGAA+AGG | + | chr5_3:13599999-13600018 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTGAGAAACAG+AGG | - | chr5_3:13600475-13600494 | Msa0800200:CDS | 25.0% |
| ! | ATAATCAAGATATTAACGTG+TGG | - | chr5_3:13600577-13600596 | Msa0800200:intron | 25.0% |
| ! | TTATGTACAAAAATGTTTCG+TGG | - | chr5_3:13600615-13600634 | Msa0800200:intron | 25.0% |
| ! | CATAATCAACTGCAAAAATA+TGG | - | chr5_3:13600669-13600688 | Msa0800200:CDS | 25.0% |
| !!! | ATGTAGTTTGTTTTTGTCAA+AGG | - | chr5_3:13600751-13600770 | Msa0800200:intron | 25.0% |
| ! | TAGATTGTTACTAAATCATG+AGG | + | chr5_3:13601071-13601090 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTTGAATT+AGG | - | chr5_3:13601120-13601139 | Msa0800200:intron | 25.0% |
| ! | CATGATTTAATTACCTTGTT+TGG | + | chr5_3:13601185-13601204 | None:intergenic | 25.0% |
| !!! | AATTAATTTGTACCAAAGTG+TGG | + | chr5_3:13601359-13601378 | None:intergenic | 25.0% |
| ! | AGTGTTTGAATTATTATGGT+TGG | + | chr5_3:13601383-13601402 | None:intergenic | 25.0% |
| !!! | AGGAAGTGTTTGAATTATTA+TGG | + | chr5_3:13601387-13601406 | None:intergenic | 25.0% |
| ! | CTCATTCATTTCAATTGATA+AGG | - | chr5_3:13601446-13601465 | Msa0800200:intron | 25.0% |
| TGTTATGATTATGAAAGGGT+TGG | + | chr5_3:13599994-13600013 | None:intergenic | 30.0% | |
| ! | TTTGGTTAATTTCTGAGAGA+GGG | + | chr5_3:13600024-13600043 | None:intergenic | 30.0% |
| AGAGTATGTTAAAGAAATCG+AGG | - | chr5_3:13600078-13600097 | Msa0800200:three_prime_UTR | 30.0% | |
| TGATTCCTTATAGAACCATT+TGG | + | chr5_3:13600303-13600322 | None:intergenic | 30.0% | |
| AAAACAGCTGTTGAATTATG+TGG | - | chr5_3:13600357-13600376 | Msa0800200:intron | 30.0% | |
| TTATATGTATTTCAGCTAGC+TGG | - | chr5_3:13600927-13600946 | Msa0800200:intron | 30.0% | |
| TATATGTATTTCAGCTAGCT+GGG | - | chr5_3:13600928-13600947 | Msa0800200:intron | 30.0% | |
| CATTTCAATTGATAAGGGTA+AGG | - | chr5_3:13601452-13601471 | Msa0800200:intron | 30.0% | |
| AAGAGTTATCAAACTTGAGA+GGG | + | chr5_3:13601521-13601540 | None:intergenic | 30.0% | |
| TAAGAGTTATCAAACTTGAG+AGG | + | chr5_3:13601522-13601541 | None:intergenic | 30.0% | |
| AAACAGGGAACTAATGAAAT+TGG | - | chr5_3:13601626-13601645 | Msa0800200:intron | 30.0% | |
| CATAGAGTTCAACATATTTG+CGG | + | chr5_3:13601710-13601729 | None:intergenic | 30.0% | |
| ATATGTTGAACTCTATGCTA+AGG | - | chr5_3:13601713-13601732 | Msa0800200:intron | 30.0% | |
| TGTTATGATTATGAAAGGGT+TGG | + | chr5_3:13599994-13600013 | None:intergenic | 30.0% | |
| ! | TTTGGTTAATTTCTGAGAGA+GGG | + | chr5_3:13600024-13600043 | None:intergenic | 30.0% |
| AGAGTATGTTAAAGAAATCG+AGG | - | chr5_3:13600078-13600097 | Msa0800200:three_prime_UTR | 30.0% | |
| TGATTCCTTATAGAACCATT+TGG | + | chr5_3:13600303-13600322 | None:intergenic | 30.0% | |
| AAAACAGCTGTTGAATTATG+TGG | - | chr5_3:13600357-13600376 | Msa0800200:intron | 30.0% | |
| TTATATGTATTTCAGCTAGC+TGG | - | chr5_3:13600927-13600946 | Msa0800200:intron | 30.0% | |
| TATATGTATTTCAGCTAGCT+GGG | - | chr5_3:13600928-13600947 | Msa0800200:intron | 30.0% | |
| CATTTCAATTGATAAGGGTA+AGG | - | chr5_3:13601452-13601471 | Msa0800200:intron | 30.0% | |
| AAGAGTTATCAAACTTGAGA+GGG | + | chr5_3:13601521-13601540 | None:intergenic | 30.0% | |
| TAAGAGTTATCAAACTTGAG+AGG | + | chr5_3:13601522-13601541 | None:intergenic | 30.0% | |
| AAACAGGGAACTAATGAAAT+TGG | - | chr5_3:13601626-13601645 | Msa0800200:intron | 30.0% | |
| CATAGAGTTCAACATATTTG+CGG | + | chr5_3:13601710-13601729 | None:intergenic | 30.0% | |
| ATATGTTGAACTCTATGCTA+AGG | - | chr5_3:13601713-13601732 | Msa0800200:intron | 30.0% | |
| ! | CTTTGGTTAATTTCTGAGAG+AGG | + | chr5_3:13600025-13600044 | None:intergenic | 35.0% |
| CATATTTAGCCATACTTGCA+AGG | + | chr5_3:13600048-13600067 | None:intergenic | 35.0% | |
| GTATGTTAAAGAAATCGAGG+AGG | - | chr5_3:13600081-13600100 | Msa0800200:three_prime_UTR | 35.0% | |
| ATATGTATTTCAGCTAGCTG+GGG | - | chr5_3:13600929-13600948 | Msa0800200:intron | 35.0% | |
| ATGTACTAGTACCTTTCTTC+CGG | + | chr5_3:13601000-13601019 | None:intergenic | 35.0% | |
| ! | TAATTACCTTGTTTGGCATC+TGG | + | chr5_3:13601178-13601197 | None:intergenic | 35.0% |
| ! | AAGAGAGATCTTTTATCGCA+TGG | - | chr5_3:13601296-13601315 | Msa0800200:intron | 35.0% |
| ! | AGAGAGATCTTTTATCGCAT+GGG | - | chr5_3:13601297-13601316 | Msa0800200:intron | 35.0% |
| AAAGATCGCTCTAACTTTGA+AGG | - | chr5_3:13601480-13601499 | Msa0800200:intron | 35.0% | |
| CACAAGAAACTCTCTGAATT+AGG | - | chr5_3:13601905-13601924 | Msa0800200:CDS | 35.0% | |
| TTATCGTTCTCAATTGGCTA+AGG | - | chr5_3:13601946-13601965 | Msa0800200:intron | 35.0% | |
| ! | CTTTGGTTAATTTCTGAGAG+AGG | + | chr5_3:13600025-13600044 | None:intergenic | 35.0% |
| CATATTTAGCCATACTTGCA+AGG | + | chr5_3:13600048-13600067 | None:intergenic | 35.0% | |
| GTATGTTAAAGAAATCGAGG+AGG | - | chr5_3:13600081-13600100 | Msa0800200:three_prime_UTR | 35.0% | |
| ATATGTATTTCAGCTAGCTG+GGG | - | chr5_3:13600929-13600948 | Msa0800200:intron | 35.0% | |
| ATGTACTAGTACCTTTCTTC+CGG | + | chr5_3:13601000-13601019 | None:intergenic | 35.0% | |
| ! | TAATTACCTTGTTTGGCATC+TGG | + | chr5_3:13601178-13601197 | None:intergenic | 35.0% |
| ! | AAGAGAGATCTTTTATCGCA+TGG | - | chr5_3:13601296-13601315 | Msa0800200:intron | 35.0% |
| ! | AGAGAGATCTTTTATCGCAT+GGG | - | chr5_3:13601297-13601316 | Msa0800200:intron | 35.0% |
| AAAGATCGCTCTAACTTTGA+AGG | - | chr5_3:13601480-13601499 | Msa0800200:intron | 35.0% | |
| CACAAGAAACTCTCTGAATT+AGG | - | chr5_3:13601905-13601924 | Msa0800200:CDS | 35.0% | |
| TTATCGTTCTCAATTGGCTA+AGG | - | chr5_3:13601946-13601965 | Msa0800200:intron | 35.0% | |
| TAACCAAAGCCTTGCAAGTA+TGG | - | chr5_3:13600036-13600055 | Msa0800200:three_prime_UTR | 40.0% | |
| ATTTATAGGTGGCATGATGC+TGG | - | chr5_3:13600246-13600265 | Msa0800200:CDS | 40.0% | |
| TACGACGCAAAAACAAGAAC+AGG | - | chr5_3:13600273-13600292 | Msa0800200:CDS | 40.0% | |
| ACGACGCAAAAACAAGAACA+GGG | - | chr5_3:13600274-13600293 | Msa0800200:CDS | 40.0% | |
| GAATTATGTGGTCAGTGAGA+CGG | - | chr5_3:13600369-13600388 | Msa0800200:intron | 40.0% | |
| TTGAGAAACAGAGGAAGTGA+AGG | - | chr5_3:13600484-13600503 | Msa0800200:CDS | 40.0% | |
| ACACCCCAAAGTTTCATATG+CGG | - | chr5_3:13600511-13600530 | Msa0800200:CDS | 40.0% | |
| AGGTCCGCATATGAAACTTT+GGG | + | chr5_3:13600518-13600537 | None:intergenic | 40.0% | |
| AAGGTCCGCATATGAAACTT+TGG | + | chr5_3:13600519-13600538 | None:intergenic | 40.0% | |
| GATATTAACGTGTGGAGTCA+TGG | - | chr5_3:13600585-13600604 | Msa0800200:intron | 40.0% | |
| CCAACTATTCACTTTGTTCC+CGG | - | chr5_3:13600978-13600997 | Msa0800200:intron | 40.0% | |
| TGTACTAGTACCTTTCTTCC+GGG | + | chr5_3:13600999-13601018 | None:intergenic | 40.0% | |
| TCATTGGAATCTCCACAAGA+AGG | - | chr5_3:13601145-13601164 | Msa0800200:intron | 40.0% | |
| AAAGACATTGTAGCTCTCTC+CGG | - | chr5_3:13601330-13601349 | Msa0800200:intron | 40.0% | |
| ! | GCTCTAACTTTGAAGGTCAA+TGG | - | chr5_3:13601487-13601506 | Msa0800200:intron | 40.0% |
| ATTGAAGCTTCCTACAGACA+AGG | - | chr5_3:13601662-13601681 | Msa0800200:CDS | 40.0% | |
| TCAACATATTTGCGGAATGC+AGG | + | chr5_3:13601702-13601721 | None:intergenic | 40.0% | |
| TCTGAATTAGGCTTCAATCC+CGG | - | chr5_3:13601917-13601936 | Msa0800200:CDS | 40.0% | |
| TGGCAGTTATCGTTCTCAAT+TGG | - | chr5_3:13601940-13601959 | Msa0800200:intron | 40.0% | |
| TAACCAAAGCCTTGCAAGTA+TGG | - | chr5_3:13600036-13600055 | Msa0800200:three_prime_UTR | 40.0% | |
| ATTTATAGGTGGCATGATGC+TGG | - | chr5_3:13600246-13600265 | Msa0800200:CDS | 40.0% | |
| TACGACGCAAAAACAAGAAC+AGG | - | chr5_3:13600273-13600292 | Msa0800200:CDS | 40.0% | |
| ACGACGCAAAAACAAGAACA+GGG | - | chr5_3:13600274-13600293 | Msa0800200:CDS | 40.0% | |
| GAATTATGTGGTCAGTGAGA+CGG | - | chr5_3:13600369-13600388 | Msa0800200:intron | 40.0% | |
| TTGAGAAACAGAGGAAGTGA+AGG | - | chr5_3:13600484-13600503 | Msa0800200:CDS | 40.0% | |
| ACACCCCAAAGTTTCATATG+CGG | - | chr5_3:13600511-13600530 | Msa0800200:CDS | 40.0% | |
| AGGTCCGCATATGAAACTTT+GGG | + | chr5_3:13600518-13600537 | None:intergenic | 40.0% | |
| AAGGTCCGCATATGAAACTT+TGG | + | chr5_3:13600519-13600538 | None:intergenic | 40.0% | |
| GATATTAACGTGTGGAGTCA+TGG | - | chr5_3:13600585-13600604 | Msa0800200:intron | 40.0% | |
| CCAACTATTCACTTTGTTCC+CGG | - | chr5_3:13600978-13600997 | Msa0800200:intron | 40.0% | |
| TGTACTAGTACCTTTCTTCC+GGG | + | chr5_3:13600999-13601018 | None:intergenic | 40.0% | |
| TCATTGGAATCTCCACAAGA+AGG | - | chr5_3:13601145-13601164 | Msa0800200:intron | 40.0% | |
| AAAGACATTGTAGCTCTCTC+CGG | - | chr5_3:13601330-13601349 | Msa0800200:intron | 40.0% | |
| ! | GCTCTAACTTTGAAGGTCAA+TGG | - | chr5_3:13601487-13601506 | Msa0800200:intron | 40.0% |
| ATTGAAGCTTCCTACAGACA+AGG | - | chr5_3:13601662-13601681 | Msa0800200:CDS | 40.0% | |
| TCAACATATTTGCGGAATGC+AGG | + | chr5_3:13601702-13601721 | None:intergenic | 40.0% | |
| TCTGAATTAGGCTTCAATCC+CGG | - | chr5_3:13601917-13601936 | Msa0800200:CDS | 40.0% | |
| TGGCAGTTATCGTTCTCAAT+TGG | - | chr5_3:13601940-13601959 | Msa0800200:intron | 40.0% | |
| TAGCCATACTTGCAAGGCTT+TGG | + | chr5_3:13600042-13600061 | None:intergenic | 45.0% | |
| TACGCTAATCGTAGCATGAG+AGG | + | chr5_3:13600151-13600170 | None:intergenic | 45.0% | |
| CGACGCAAAAACAAGAACAG+GGG | - | chr5_3:13600275-13600294 | Msa0800200:CDS | 45.0% | |
| GACGCAAAAACAAGAACAGG+GGG | - | chr5_3:13600276-13600295 | Msa0800200:CDS | 45.0% | |
| ! | GGGGTCCAAATGGTTCTATA+AGG | - | chr5_3:13600295-13600314 | Msa0800200:CDS | 45.0% |
| CTGAACCATGCTGCTAACAA+GGG | - | chr5_3:13600330-13600349 | Msa0800200:intron | 45.0% | |
| GGTCCGCATATGAAACTTTG+GGG | + | chr5_3:13600517-13600536 | None:intergenic | 45.0% | |
| TTCATATGCGGACCTTTACC+AGG | - | chr5_3:13600523-13600542 | Msa0800200:CDS | 45.0% | |
| CCGGGAACAAAGTGAATAGT+TGG | + | chr5_3:13600981-13601000 | None:intergenic | 45.0% | |
| TCACTTTGTTCCCGGAAGAA+AGG | - | chr5_3:13600986-13601005 | Msa0800200:intron | 45.0% | |
| ! | TACCTTGTTTGGCATCTGGA+AGG | + | chr5_3:13601174-13601193 | None:intergenic | 45.0% |
| ! | TCAACTAGAGCCTTGTCTGT+AGG | + | chr5_3:13601675-13601694 | None:intergenic | 45.0% |
| TTGAGAACGATAACTGCCAC+CGG | + | chr5_3:13601939-13601958 | None:intergenic | 45.0% | |
| TGAGCTCAAGTAAGTAACCC+AGG | + | chr5_3:13602009-13602028 | None:intergenic | 45.0% | |
| TAGCCATACTTGCAAGGCTT+TGG | + | chr5_3:13600042-13600061 | None:intergenic | 45.0% | |
| TACGCTAATCGTAGCATGAG+AGG | + | chr5_3:13600151-13600170 | None:intergenic | 45.0% | |
| CGACGCAAAAACAAGAACAG+GGG | - | chr5_3:13600275-13600294 | Msa0800200:CDS | 45.0% | |
| GACGCAAAAACAAGAACAGG+GGG | - | chr5_3:13600276-13600295 | Msa0800200:CDS | 45.0% | |
| ! | GGGGTCCAAATGGTTCTATA+AGG | - | chr5_3:13600295-13600314 | Msa0800200:CDS | 45.0% |
| CTGAACCATGCTGCTAACAA+GGG | - | chr5_3:13600330-13600349 | Msa0800200:intron | 45.0% | |
| GGTCCGCATATGAAACTTTG+GGG | + | chr5_3:13600517-13600536 | None:intergenic | 45.0% | |
| TTCATATGCGGACCTTTACC+AGG | - | chr5_3:13600523-13600542 | Msa0800200:CDS | 45.0% | |
| CCGGGAACAAAGTGAATAGT+TGG | + | chr5_3:13600981-13601000 | None:intergenic | 45.0% | |
| TCACTTTGTTCCCGGAAGAA+AGG | - | chr5_3:13600986-13601005 | Msa0800200:intron | 45.0% | |
| ! | TACCTTGTTTGGCATCTGGA+AGG | + | chr5_3:13601174-13601193 | None:intergenic | 45.0% |
| ! | TCAACTAGAGCCTTGTCTGT+AGG | + | chr5_3:13601675-13601694 | None:intergenic | 45.0% |
| TTGAGAACGATAACTGCCAC+CGG | + | chr5_3:13601939-13601958 | None:intergenic | 45.0% | |
| TGAGCTCAAGTAAGTAACCC+AGG | + | chr5_3:13602009-13602028 | None:intergenic | 45.0% | |
| !! | AAAATTAATTAAACAAATTA+AGG | + | chr5_3:13600401-13600420 | None:intergenic | 5.0% |
| !! | AAAATTAATTAAACAAATTA+AGG | + | chr5_3:13600401-13600420 | None:intergenic | 5.0% |
| ACAAGAACAGGGGGTCCAAA+TGG | - | chr5_3:13600285-13600304 | Msa0800200:CDS | 50.0% | |
| GCTGAACCATGCTGCTAACA+AGG | - | chr5_3:13600329-13600348 | Msa0800200:intron | 50.0% | |
| TCAAGCCCTTGTTAGCAGCA+TGG | + | chr5_3:13600338-13600357 | None:intergenic | 50.0% | |
| TTATGTGGTCAGTGAGACGG+TGG | - | chr5_3:13600372-13600391 | Msa0800200:intron | 50.0% | |
| TCCTCGCACGTGTGCTAAAA+AGG | - | chr5_3:13600871-13600890 | Msa0800200:CDS | 50.0% | |
| CCTCGCACGTGTGCTAAAAA+GGG | - | chr5_3:13600872-13600891 | Msa0800200:CDS | 50.0% | |
| ATTTCAGCTAGCTGGGGTTG+TGG | - | chr5_3:13600935-13600954 | Msa0800200:intron | 50.0% | |
| TTGTACCAAAGTGTGGCCTC+CGG | + | chr5_3:13601352-13601371 | None:intergenic | 50.0% | |
| GAATTAGGCTTCAATCCCGG+TGG | - | chr5_3:13601920-13601939 | Msa0800200:CDS | 50.0% | |
| TGAGAACGATAACTGCCACC+GGG | + | chr5_3:13601938-13601957 | None:intergenic | 50.0% | |
| CAATTGGCTAAGGCAGCGTT+AGG | - | chr5_3:13601956-13601975 | Msa0800200:intron | 50.0% | |
| TGCCTCAACTGTTGTGATCC+TGG | - | chr5_3:13601988-13602007 | Msa0800200:intron | 50.0% | |
| GCCTCAACTGTTGTGATCCT+GGG | - | chr5_3:13601989-13602008 | Msa0800200:intron | 50.0% | |
| ACCCAGGATCACAACAGTTG+AGG | + | chr5_3:13601993-13602012 | None:intergenic | 50.0% | |
| ACAAGAACAGGGGGTCCAAA+TGG | - | chr5_3:13600285-13600304 | Msa0800200:CDS | 50.0% | |
| GCTGAACCATGCTGCTAACA+AGG | - | chr5_3:13600329-13600348 | Msa0800200:intron | 50.0% | |
| TCAAGCCCTTGTTAGCAGCA+TGG | + | chr5_3:13600338-13600357 | None:intergenic | 50.0% | |
| TTATGTGGTCAGTGAGACGG+TGG | - | chr5_3:13600372-13600391 | Msa0800200:intron | 50.0% | |
| TCCTCGCACGTGTGCTAAAA+AGG | - | chr5_3:13600871-13600890 | Msa0800200:CDS | 50.0% | |
| CCTCGCACGTGTGCTAAAAA+GGG | - | chr5_3:13600872-13600891 | Msa0800200:CDS | 50.0% | |
| ATTTCAGCTAGCTGGGGTTG+TGG | - | chr5_3:13600935-13600954 | Msa0800200:intron | 50.0% | |
| TTGTACCAAAGTGTGGCCTC+CGG | + | chr5_3:13601352-13601371 | None:intergenic | 50.0% | |
| GAATTAGGCTTCAATCCCGG+TGG | - | chr5_3:13601920-13601939 | Msa0800200:CDS | 50.0% | |
| TGAGAACGATAACTGCCACC+GGG | + | chr5_3:13601938-13601957 | None:intergenic | 50.0% | |
| CAATTGGCTAAGGCAGCGTT+AGG | - | chr5_3:13601956-13601975 | Msa0800200:intron | 50.0% | |
| TGCCTCAACTGTTGTGATCC+TGG | - | chr5_3:13601988-13602007 | Msa0800200:intron | 50.0% | |
| GCCTCAACTGTTGTGATCCT+GGG | - | chr5_3:13601989-13602008 | Msa0800200:intron | 50.0% | |
| ACCCAGGATCACAACAGTTG+AGG | + | chr5_3:13601993-13602012 | None:intergenic | 50.0% | |
| !! | CCCTTTTTAGCACACGTGCG+AGG | + | chr5_3:13600875-13600894 | None:intergenic | 55.0% |
| GTTGTGGCTGTAGAGGTCAC+TGG | - | chr5_3:13600951-13600970 | Msa0800200:intron | 55.0% | |
| TCTGGAAGGCGACCTTCTTG+TGG | + | chr5_3:13601160-13601179 | None:intergenic | 55.0% | |
| CGCCTTCCAGATGCCAAACA+AGG | - | chr5_3:13601169-13601188 | Msa0800200:intron | 55.0% | |
| GACATTGTAGCTCTCTCCGG+AGG | - | chr5_3:13601333-13601352 | Msa0800200:intron | 55.0% | |
| GGCTAAGGCAGCGTTAGGAA+TGG | - | chr5_3:13601961-13601980 | Msa0800200:intron | 55.0% | |
| !! | CCCTTTTTAGCACACGTGCG+AGG | + | chr5_3:13600875-13600894 | None:intergenic | 55.0% |
| GTTGTGGCTGTAGAGGTCAC+TGG | - | chr5_3:13600951-13600970 | Msa0800200:intron | 55.0% | |
| TCTGGAAGGCGACCTTCTTG+TGG | + | chr5_3:13601160-13601179 | None:intergenic | 55.0% | |
| CGCCTTCCAGATGCCAAACA+AGG | - | chr5_3:13601169-13601188 | Msa0800200:intron | 55.0% | |
| GACATTGTAGCTCTCTCCGG+AGG | - | chr5_3:13601333-13601352 | Msa0800200:intron | 55.0% | |
| GGCTAAGGCAGCGTTAGGAA+TGG | - | chr5_3:13601961-13601980 | Msa0800200:intron | 55.0% | |
| AGCTGGGGTTGTGGCTGTAG+AGG | - | chr5_3:13600944-13600963 | Msa0800200:intron | 60.0% | |
| GTGGCTGTAGAGGTCACTGG+TGG | - | chr5_3:13600954-13600973 | Msa0800200:intron | 60.0% | |
| TCTCTCCGGAGGCCACACTT+TGG | - | chr5_3:13601344-13601363 | Msa0800200:intron | 60.0% | |
| AGCTGGGGTTGTGGCTGTAG+AGG | - | chr5_3:13600944-13600963 | Msa0800200:intron | 60.0% | |
| GTGGCTGTAGAGGTCACTGG+TGG | - | chr5_3:13600954-13600973 | Msa0800200:intron | 60.0% | |
| TCTCTCCGGAGGCCACACTT+TGG | - | chr5_3:13601344-13601363 | Msa0800200:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 13599959 | 13602236 | 13599959 | ID=Msa0800200;Name=Msa0800200 |
| chr5_3 | mRNA | 13599959 | 13602236 | 13599959 | ID=Msa0800200-mRNA-1;Parent=Msa0800200;Name=Msa0800200-mRNA-1;_AED=0.13;_eAED=0.13;_QI=96|1|1|1|1|1|9|191|281 |
| chr5_3 | exon | 13599959 | 13600326 | 13599959 | ID=Msa0800200-mRNA-1:exon:5664;Parent=Msa0800200-mRNA-1 |
| chr5_3 | exon | 13600461 | 13600563 | 13600461 | ID=Msa0800200-mRNA-1:exon:5663;Parent=Msa0800200-mRNA-1 |
| chr5_3 | exon | 13600648 | 13600727 | 13600648 | ID=Msa0800200-mRNA-1:exon:5662;Parent=Msa0800200-mRNA-1 |
| chr5_3 | exon | 13600830 | 13600912 | 13600830 | ID=Msa0800200-mRNA-1:exon:5661;Parent=Msa0800200-mRNA-1 |
| chr5_3 | exon | 13601005 | 13601053 | 13601005 | ID=Msa0800200-mRNA-1:exon:5660;Parent=Msa0800200-mRNA-1 |
| chr5_3 | exon | 13601188 | 13601253 | 13601188 | ID=Msa0800200-mRNA-1:exon:5659;Parent=Msa0800200-mRNA-1 |
| chr5_3 | exon | 13601651 | 13601700 | 13601651 | ID=Msa0800200-mRNA-1:exon:5658;Parent=Msa0800200-mRNA-1 |
| chr5_3 | exon | 13601817 | 13601941 | 13601817 | ID=Msa0800200-mRNA-1:exon:5657;Parent=Msa0800200-mRNA-1 |
| chr5_3 | exon | 13602028 | 13602236 | 13602028 | ID=Msa0800200-mRNA-1:exon:5656;Parent=Msa0800200-mRNA-1 |
| chr5_3 | five_prime_UTR | 13602141 | 13602236 | 13602141 | ID=Msa0800200-mRNA-1:five_prime_utr;Parent=Msa0800200-mRNA-1 |
| chr5_3 | CDS | 13602028 | 13602140 | 13602028 | ID=Msa0800200-mRNA-1:cds;Parent=Msa0800200-mRNA-1 |
| chr5_3 | CDS | 13601817 | 13601941 | 13601817 | ID=Msa0800200-mRNA-1:cds;Parent=Msa0800200-mRNA-1 |
| chr5_3 | CDS | 13601651 | 13601700 | 13601651 | ID=Msa0800200-mRNA-1:cds;Parent=Msa0800200-mRNA-1 |
| chr5_3 | CDS | 13601188 | 13601253 | 13601188 | ID=Msa0800200-mRNA-1:cds;Parent=Msa0800200-mRNA-1 |
| chr5_3 | CDS | 13601005 | 13601053 | 13601005 | ID=Msa0800200-mRNA-1:cds;Parent=Msa0800200-mRNA-1 |
| chr5_3 | CDS | 13600830 | 13600912 | 13600830 | ID=Msa0800200-mRNA-1:cds;Parent=Msa0800200-mRNA-1 |
| chr5_3 | CDS | 13600648 | 13600727 | 13600648 | ID=Msa0800200-mRNA-1:cds;Parent=Msa0800200-mRNA-1 |
| chr5_3 | CDS | 13600461 | 13600563 | 13600461 | ID=Msa0800200-mRNA-1:cds;Parent=Msa0800200-mRNA-1 |
| chr5_3 | CDS | 13600150 | 13600326 | 13600150 | ID=Msa0800200-mRNA-1:cds;Parent=Msa0800200-mRNA-1 |
| chr5_3 | three_prime_UTR | 13599959 | 13600149 | 13599959 | ID=Msa0800200-mRNA-1:three_prime_utr;Parent=Msa0800200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
