Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268380 | sp|Q42564|APX3_ARATH | 73.745 | 259 | 68 | 0 | 1 | 259 | 1 | 259 | 6.28e-143 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268380 | G7JXJ2 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa1268380 | 0.834451 | 2.974099e-56 | -8.615850e-47 |
| Msa0609300 | Msa1268380 | 0.850125 | 2.077900e-60 | -8.615850e-47 |
| Msa0691910 | Msa1268380 | 0.844343 | 8.017280e-59 | -8.615850e-47 |
| Msa0759010 | Msa1268380 | 0.967184 | 6.269415e-127 | -8.615850e-47 |
| Msa0782750 | Msa1268380 | 0.804776 | 1.836029e-49 | -8.615850e-47 |
| Msa0800140 | Msa1268380 | 0.992977 | 1.185719e-196 | -8.615850e-47 |
| Msa0800170 | Msa1268380 | 0.982954 | 1.927852e-156 | -8.615850e-47 |
| Msa0800200 | Msa1268380 | 0.993519 | 2.674621e-200 | -8.615850e-47 |
| Msa0125210 | Msa1268380 | 0.810267 | 1.254949e-50 | -8.615850e-47 |
| Msa0155180 | Msa1268380 | 0.828791 | 7.385877e-55 | -8.615850e-47 |
| Msa1268380 | Msa1268410 | 0.985227 | 6.487288e-163 | -8.615850e-47 |
| Msa1268380 | Msa1268440 | 0.980652 | 1.023298e-150 | -8.615850e-47 |
| Msa0432320 | Msa1268380 | 0.805306 | 1.422855e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268380 | MtrunA17_Chr5g0405731 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Msa1268380 | MtrunA17_Chr4g0037131 | 72.043 | 279 | 73 | 1 | 6 | 279 | 7 | 285 | 7.58e-148 | 415 |
| Msa1268380 | MtrunA17_Chr4g0030171 | 64.583 | 240 | 84 | 1 | 6 | 244 | 8 | 247 | 1.60e-113 | 327 |
| Msa1268380 | MtrunA17_Chr3g0124821 | 49.425 | 261 | 105 | 6 | 13 | 246 | 100 | 360 | 1.52e-76 | 238 |
| Msa1268380 | MtrunA17_Chr3g0137751 | 37.860 | 243 | 127 | 6 | 11 | 243 | 86 | 314 | 4.01e-41 | 144 |
| Msa1268380 | MtrunA17_Chr7g0225221 | 29.278 | 263 | 141 | 10 | 35 | 256 | 60 | 318 | 3.14e-18 | 83.2 |
| Msa1268380 | MtrunA17_Chr4g0053871 | 28.854 | 253 | 135 | 7 | 32 | 243 | 59 | 307 | 1.17e-16 | 78.6 |
| Msa1268380 | MtrunA17_Chr1g0157051 | 29.225 | 284 | 133 | 13 | 22 | 253 | 46 | 313 | 2.03e-16 | 77.8 |
| Msa1268380 | MtrunA17_Chr4g0013721 | 27.208 | 283 | 136 | 9 | 15 | 242 | 113 | 380 | 7.75e-15 | 73.9 |
| Msa1268380 | MtrunA17_Chr6g0467161 | 27.203 | 261 | 133 | 10 | 31 | 247 | 76 | 323 | 1.16e-14 | 73.2 |
| Msa1268380 | MtrunA17_Chr7g0258811 | 24.719 | 267 | 151 | 9 | 22 | 242 | 91 | 353 | 1.78e-13 | 69.7 |
| Msa1268380 | MtrunA17_Chr5g0426581 | 31.928 | 166 | 79 | 5 | 27 | 158 | 113 | 278 | 1.20e-12 | 67.4 |
| Msa1268380 | MtrunA17_Chr3g0129061 | 26.087 | 253 | 133 | 9 | 34 | 242 | 62 | 304 | 2.78e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268380 | AT4G35000.1 | 73.745 | 259 | 68 | 0 | 1 | 259 | 1 | 259 | 6.39e-144 | 405 |
| Msa1268380 | AT4G35970.1 | 66.788 | 274 | 90 | 1 | 6 | 279 | 5 | 277 | 2.67e-135 | 384 |
| Msa1268380 | AT4G35970.2 | 72.018 | 218 | 60 | 1 | 6 | 223 | 5 | 221 | 3.04e-115 | 331 |
| Msa1268380 | AT3G09640.2 | 63.180 | 239 | 88 | 0 | 6 | 244 | 9 | 247 | 3.75e-109 | 316 |
| Msa1268380 | AT3G09640.1 | 63.180 | 239 | 88 | 0 | 6 | 244 | 9 | 247 | 3.75e-109 | 316 |
| Msa1268380 | AT1G07890.2 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268380 | AT1G07890.8 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268380 | AT1G07890.4 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268380 | AT1G07890.7 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268380 | AT1G07890.1 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268380 | AT1G07890.3 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268380 | AT1G07890.5 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa1268380 | AT1G07890.6 | 59.583 | 240 | 96 | 1 | 6 | 244 | 8 | 247 | 3.81e-104 | 303 |
| Msa1268380 | AT4G08390.2 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa1268380 | AT4G08390.5 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa1268380 | AT4G08390.1 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa1268380 | AT4G08390.3 | 49.042 | 261 | 106 | 6 | 13 | 246 | 105 | 365 | 1.27e-77 | 240 |
| Msa1268380 | AT1G77490.2 | 49.042 | 261 | 106 | 6 | 13 | 246 | 85 | 345 | 1.24e-75 | 237 |
| Msa1268380 | AT1G77490.1 | 49.042 | 261 | 106 | 6 | 13 | 246 | 85 | 345 | 1.58e-75 | 236 |
| Msa1268380 | AT4G08390.4 | 44.828 | 261 | 91 | 7 | 13 | 246 | 106 | 340 | 2.68e-64 | 205 |
| Msa1268380 | AT4G32320.1 | 37.288 | 236 | 124 | 6 | 18 | 243 | 102 | 323 | 1.96e-39 | 140 |
| Msa1268380 | AT4G17690.1 | 37.019 | 208 | 85 | 8 | 72 | 243 | 108 | 305 | 2.88e-22 | 94.7 |
| Msa1268380 | AT4G16270.1 | 30.496 | 282 | 123 | 12 | 23 | 249 | 73 | 336 | 2.09e-21 | 92.8 |
| Msa1268380 | AT1G49570.1 | 27.857 | 280 | 136 | 9 | 22 | 247 | 70 | 337 | 5.62e-19 | 85.9 |
| Msa1268380 | AT4G30170.1 | 30.620 | 258 | 127 | 10 | 31 | 243 | 58 | 308 | 2.79e-16 | 77.8 |
| Msa1268380 | AT4G09010.2 | 34.375 | 160 | 71 | 5 | 32 | 157 | 49 | 208 | 1.10e-15 | 75.9 |
| Msa1268380 | AT4G09010.1 | 34.375 | 160 | 71 | 5 | 32 | 157 | 114 | 273 | 2.73e-15 | 75.5 |
| Msa1268380 | AT5G14130.1 | 27.027 | 259 | 143 | 8 | 31 | 247 | 63 | 317 | 3.00e-15 | 75.1 |
| Msa1268380 | AT5G14130.2 | 27.027 | 259 | 143 | 8 | 31 | 247 | 104 | 358 | 5.04e-15 | 74.7 |
| Msa1268380 | AT4G09010.3 | 34.375 | 160 | 71 | 5 | 32 | 157 | 161 | 320 | 7.14e-15 | 74.3 |
| Msa1268380 | AT4G37530.1 | 26.966 | 267 | 139 | 9 | 32 | 249 | 59 | 318 | 2.74e-14 | 72.4 |
| Msa1268380 | AT5G42180.1 | 28.364 | 275 | 132 | 10 | 22 | 245 | 45 | 305 | 3.65e-14 | 71.6 |
| Msa1268380 | AT4G37520.1 | 26.592 | 267 | 140 | 9 | 32 | 249 | 59 | 318 | 5.37e-13 | 68.6 |
| Msa1268380 | AT3G49960.1 | 28.352 | 261 | 131 | 9 | 32 | 243 | 59 | 312 | 9.05e-13 | 67.8 |
| Msa1268380 | AT4G37530.2 | 32.022 | 178 | 99 | 7 | 32 | 191 | 59 | 232 | 2.06e-12 | 66.2 |
| Msa1268380 | AT5G17820.1 | 26.296 | 270 | 134 | 12 | 10 | 230 | 29 | 282 | 2.16e-12 | 66.6 |
| Msa1268380 | AT5G17820.2 | 26.296 | 270 | 134 | 12 | 10 | 230 | 82 | 335 | 7.29e-12 | 65.5 |
| Msa1268380 | AT5G15180.1 | 26.937 | 271 | 137 | 9 | 26 | 247 | 58 | 316 | 9.22e-12 | 65.1 |
Find 71 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAGGGAACTAATGAAAT+TGG | 0.251753 | 8_3:-1376059 | Msa1268380:intron |
| TGCCTCAACTGTTGTGATCC+TGG | 0.267857 | 8_3:-1375701 | Msa1268380:CDS |
| TAACCAAAGCCTTGCAAGTA+TGG | 0.276478 | 8_3:-1377649 | Msa1268380:exon |
| CATGATTTAATTACCTTGTT+TGG | 0.286806 | 8_3:+1376503 | None:intergenic |
| CACAAGAAACTCTCTGAATT+AGG | 0.339734 | 8_3:-1375784 | Msa1268380:CDS |
| ATGTACTAGTACCTTTCTTC+CGG | 0.351786 | 8_3:+1376688 | None:intergenic |
| TAGCCATACTTGCAAGGCTT+TGG | 0.388173 | 8_3:+1377646 | None:intergenic |
| CCAACTATTCACTTTGTTCC+CGG | 0.389997 | 8_3:-1376707 | Msa1268380:CDS |
| AGGTCCGCATATGAAACTTT+GGG | 0.390870 | 8_3:+1377170 | None:intergenic |
| TTATATGTATTTCAGCTAGC+TGG | 0.393811 | 8_3:-1376758 | Msa1268380:intron |
| TAATTACCTTGTTTGGCATC+TGG | 0.400655 | 8_3:+1376510 | None:intergenic |
| TGATTCCTTATAGAACCATT+TGG | 0.401526 | 8_3:+1377385 | None:intergenic |
| GCCTCAACTGTTGTGATCCT+GGG | 0.428816 | 8_3:-1375700 | Msa1268380:CDS |
| AAAGATCGCTCTAACTTTGA+AGG | 0.430021 | 8_3:-1376205 | Msa1268380:CDS |
| AAGGTCCGCATATGAAACTT+TGG | 0.433809 | 8_3:+1377169 | None:intergenic |
| TGTACTAGTACCTTTCTTCC+GGG | 0.435662 | 8_3:+1376689 | None:intergenic |
| TGGCAGTTATCGTTCTCAAT+TGG | 0.438208 | 8_3:-1375749 | Msa1268380:CDS |
| CATAGAGTTCAACATATTTG+CGG | 0.439517 | 8_3:+1375978 | None:intergenic |
| TCAACATATTTGCGGAATGC+AGG | 0.460562 | 8_3:+1375986 | None:intergenic |
| TCACTTTGTTCCCGGAAGAA+AGG | 0.460671 | 8_3:-1376699 | Msa1268380:intron |
| TATATGTATTTCAGCTAGCT+GGG | 0.463788 | 8_3:-1376757 | Msa1268380:intron |
| TTGCTTGTTATGATTATGAA+AGG | 0.466835 | 8_3:+1377689 | None:intergenic |
| CAATTGGCTAAGGCAGCGTT+AGG | 0.473147 | 8_3:-1375733 | Msa1268380:CDS |
| GTTGTGGCTGTAGAGGTCAC+TGG | 0.475048 | 8_3:-1376734 | Msa1268380:CDS |
| AAAACAGCTGTTGAATTATG+TGG | 0.483315 | 8_3:-1377328 | Msa1268380:intron |
| CATATTTAGCCATACTTGCA+AGG | 0.494767 | 8_3:+1377640 | None:intergenic |
| AGCTGGGGTTGTGGCTGTAG+AGG | 0.496133 | 8_3:-1376741 | Msa1268380:CDS |
| GCTCTAACTTTGAAGGTCAA+TGG | 0.497264 | 8_3:-1376198 | Msa1268380:CDS |
| GGGGTCCAAATGGTTCTATA+AGG | 0.497436 | 8_3:-1377390 | Msa1268380:CDS |
| CCGGGAACAAAGTGAATAGT+TGG | 0.498623 | 8_3:+1376707 | None:intergenic |
| GCTGAACCATGCTGCTAACA+AGG | 0.508818 | 8_3:-1377356 | Msa1268380:CDS |
| ATTTCAGCTAGCTGGGGTTG+TGG | 0.511946 | 8_3:-1376750 | Msa1268380:intron |
| ATTATAAAATAACCTGGTAA+AGG | 0.515916 | 8_3:+1377150 | None:intergenic |
| TTCATATGCGGACCTTTACC+AGG | 0.516618 | 8_3:-1377162 | Msa1268380:intron |
| TCTGGAAGGCGACCTTCTTG+TGG | 0.517530 | 8_3:+1376528 | None:intergenic |
| TTGAGAAACAGAGGAAGTGA+AGG | 0.521165 | 8_3:-1377201 | Msa1268380:intron |
| TTTGGTTAATTTCTGAGAGA+GGG | 0.530694 | 8_3:+1377664 | None:intergenic |
| TCAAGCCCTTGTTAGCAGCA+TGG | 0.531740 | 8_3:+1377350 | None:intergenic |
| ATATGTTGAACTCTATGCTA+AGG | 0.543090 | 8_3:-1375972 | Msa1268380:intron |
| TTGTACCAAAGTGTGGCCTC+CGG | 0.545189 | 8_3:+1376336 | None:intergenic |
| AAAGACATTGTAGCTCTCTC+CGG | 0.548124 | 8_3:-1376355 | Msa1268380:CDS |
| CGCCTTCCAGATGCCAAACA+AGG | 0.549529 | 8_3:-1376516 | Msa1268380:intron |
| TTATCGTTCTCAATTGGCTA+AGG | 0.549693 | 8_3:-1375743 | Msa1268380:CDS |
| TGCTTGTTATGATTATGAAA+GGG | 0.553361 | 8_3:+1377690 | None:intergenic |
| ATTTATAGGTGGCATGATGC+TGG | 0.555051 | 8_3:-1377439 | Msa1268380:intron |
| TACCTTGTTTGGCATCTGGA+AGG | 0.559846 | 8_3:+1376514 | None:intergenic |
| CTTTGGTTAATTTCTGAGAG+AGG | 0.565568 | 8_3:+1377663 | None:intergenic |
| AATTAATTTGTACCAAAGTG+TGG | 0.573092 | 8_3:+1376329 | None:intergenic |
| GGCTAAGGCAGCGTTAGGAA+TGG | 0.573545 | 8_3:-1375728 | Msa1268380:CDS |
| TAAGAGTTATCAAACTTGAG+AGG | 0.573775 | 8_3:+1376166 | None:intergenic |
| TGTTATGATTATGAAAGGGT+TGG | 0.578122 | 8_3:+1377694 | None:intergenic |
| TTGAGAACGATAACTGCCAC+CGG | 0.582999 | 8_3:+1375753 | None:intergenic |
| AAGAGTTATCAAACTTGAGA+GGG | 0.589980 | 8_3:+1376167 | None:intergenic |
| TCTCTCCGGAGGCCACACTT+TGG | 0.591661 | 8_3:-1376341 | Msa1268380:intron |
| TCTGAATTAGGCTTCAATCC+CGG | 0.595170 | 8_3:-1375772 | Msa1268380:CDS |
| TACGCTAATCGTAGCATGAG+AGG | 0.599636 | 8_3:+1377537 | None:intergenic |
| GGTCCGCATATGAAACTTTG+GGG | 0.601066 | 8_3:+1377171 | None:intergenic |
| TCAACTAGAGCCTTGTCTGT+AGG | 0.607702 | 8_3:+1376013 | None:intergenic |
| ATTGAAGCTTCCTACAGACA+AGG | 0.615401 | 8_3:-1376023 | Msa1268380:CDS |
| CTGAACCATGCTGCTAACAA+GGG | 0.615953 | 8_3:-1377355 | Msa1268380:CDS |
| GACATTGTAGCTCTCTCCGG+AGG | 0.618468 | 8_3:-1376352 | Msa1268380:CDS |
| TCATTGGAATCTCCACAAGA+AGG | 0.637304 | 8_3:-1376540 | Msa1268380:CDS |
| ACCCAGGATCACAACAGTTG+AGG | 0.637431 | 8_3:+1375699 | None:intergenic |
| ATATGTATTTCAGCTAGCTG+GGG | 0.644095 | 8_3:-1376756 | Msa1268380:intron |
| TGAGCTCAAGTAAGTAACCC+AGG | 0.647120 | 8_3:+1375683 | None:intergenic |
| AGAGTATGTTAAAGAAATCG+AGG | 0.648519 | 8_3:-1377607 | Msa1268380:CDS |
| ACACCCCAAAGTTTCATATG+CGG | 0.685445 | 8_3:-1377174 | Msa1268380:CDS |
| TGAGAACGATAACTGCCACC+GGG | 0.688112 | 8_3:+1375754 | None:intergenic |
| GTGGCTGTAGAGGTCACTGG+TGG | 0.707904 | 8_3:-1376731 | Msa1268380:CDS |
| GAATTAGGCTTCAATCCCGG+TGG | 0.713172 | 8_3:-1375769 | Msa1268380:CDS |
| GTATGTTAAAGAAATCGAGG+AGG | 0.749911 | 8_3:-1377604 | Msa1268380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATATAGTATTGATTTAT+AGG | - | chr8_3:1375748-1375767 | Msa1268380:CDS | 10.0% |
| !! | AAAAAAATTATAAAATAACC+TGG | + | chr8_3:1376060-1376079 | None:intergenic | 10.0% |
| !!! | AATATATAGTATTGATTTAT+AGG | - | chr8_3:1375748-1375767 | Msa1268380:CDS | 10.0% |
| !! | AAAAAAATTATAAAATAACC+TGG | + | chr8_3:1376060-1376079 | None:intergenic | 10.0% |
| !! | TATGTATATGTTATAGTAAA+AGG | + | chr8_3:1375720-1375739 | None:intergenic | 15.0% |
| !! | AAGATTAATAAGCAAAAAAT+TGG | + | chr8_3:1375958-1375977 | None:intergenic | 15.0% |
| !!! | TTAATTCATATTCAATTTTG+TGG | + | chr8_3:1376314-1376333 | None:intergenic | 15.0% |
| !! | ATTAATCATGTGTAAAAATA+TGG | + | chr8_3:1376364-1376383 | None:intergenic | 15.0% |
| !!! | TATTTTTACACATGATTAAT+CGG | - | chr8_3:1376364-1376383 | Msa1268380:CDS | 15.0% |
| !! | ATTATTATAGTAGTATTATG+AGG | - | chr8_3:1376617-1376636 | Msa1268380:intron | 15.0% |
| !! | TGTATAAAAAACTATATTTC+AGG | - | chr8_3:1376777-1376796 | Msa1268380:intron | 15.0% |
| !! | TTCTTCAAGAAATATAATAA+AGG | + | chr8_3:1376923-1376942 | None:intergenic | 15.0% |
| !!! | TTGTTCTCTATTTTTTTTTT+TGG | - | chr8_3:1377276-1377295 | Msa1268380:intron | 15.0% |
| !!! | ATAGTATTATGTATTTTTTG+TGG | - | chr8_3:1377332-1377351 | Msa1268380:CDS | 15.0% |
| !!! | TAATGATTTTGAATTTTACT+AGG | - | chr8_3:1377359-1377378 | Msa1268380:CDS | 15.0% |
| !! | TATGTATATGTTATAGTAAA+AGG | + | chr8_3:1375720-1375739 | None:intergenic | 15.0% |
| !! | AAGATTAATAAGCAAAAAAT+TGG | + | chr8_3:1375958-1375977 | None:intergenic | 15.0% |
| !!! | TTAATTCATATTCAATTTTG+TGG | + | chr8_3:1376314-1376333 | None:intergenic | 15.0% |
| !! | ATTAATCATGTGTAAAAATA+TGG | + | chr8_3:1376364-1376383 | None:intergenic | 15.0% |
| !!! | TATTTTTACACATGATTAAT+CGG | - | chr8_3:1376364-1376383 | Msa1268380:CDS | 15.0% |
| !! | ATTATTATAGTAGTATTATG+AGG | - | chr8_3:1376617-1376636 | Msa1268380:intron | 15.0% |
| !! | TGTATAAAAAACTATATTTC+AGG | - | chr8_3:1376777-1376796 | Msa1268380:intron | 15.0% |
| !! | TTCTTCAAGAAATATAATAA+AGG | + | chr8_3:1376923-1376942 | None:intergenic | 15.0% |
| !!! | TTGTTCTCTATTTTTTTTTT+TGG | - | chr8_3:1377276-1377295 | Msa1268380:intron | 15.0% |
| !!! | ATAGTATTATGTATTTTTTG+TGG | - | chr8_3:1377332-1377351 | Msa1268380:CDS | 15.0% |
| !!! | TAATGATTTTGAATTTTACT+AGG | - | chr8_3:1377359-1377378 | Msa1268380:CDS | 15.0% |
| !!! | ATATAGTATTGATTTATAGG+TGG | - | chr8_3:1375751-1375770 | Msa1268380:CDS | 20.0% |
| !! | ATTATAAAATAACCTGGTAA+AGG | + | chr8_3:1376054-1376073 | None:intergenic | 20.0% |
| !! | AATTCACTTGAATAAATGAT+TGG | - | chr8_3:1376210-1376229 | Msa1268380:CDS | 20.0% |
| !! | CTAGATTAAGTTAAAGATTA+TGG | - | chr8_3:1376238-1376257 | Msa1268380:intron | 20.0% |
| !!! | TATTTTGAATTAGGATTCAT+TGG | - | chr8_3:1376645-1376664 | Msa1268380:intron | 20.0% |
| !! | TCATTCATTTCAATTGATAA+GGG | - | chr8_3:1376963-1376982 | Msa1268380:intron | 20.0% |
| !! | AATACAAGATTAACATAAAC+AGG | - | chr8_3:1377126-1377145 | Msa1268380:intron | 20.0% |
| !! | ATACAAGATTAACATAAACA+GGG | - | chr8_3:1377127-1377146 | Msa1268380:intron | 20.0% |
| !!! | ATGATGATATGTTTTTTATG+AGG | + | chr8_3:1377633-1377652 | None:intergenic | 20.0% |
| !!! | ATATAGTATTGATTTATAGG+TGG | - | chr8_3:1375751-1375770 | Msa1268380:CDS | 20.0% |
| !! | ATTATAAAATAACCTGGTAA+AGG | + | chr8_3:1376054-1376073 | None:intergenic | 20.0% |
| !! | AATTCACTTGAATAAATGAT+TGG | - | chr8_3:1376210-1376229 | Msa1268380:CDS | 20.0% |
| !! | CTAGATTAAGTTAAAGATTA+TGG | - | chr8_3:1376238-1376257 | Msa1268380:intron | 20.0% |
| !!! | TATTTTGAATTAGGATTCAT+TGG | - | chr8_3:1376645-1376664 | Msa1268380:intron | 20.0% |
| !! | TCATTCATTTCAATTGATAA+GGG | - | chr8_3:1376963-1376982 | Msa1268380:intron | 20.0% |
| !! | AATACAAGATTAACATAAAC+AGG | - | chr8_3:1377126-1377145 | Msa1268380:intron | 20.0% |
| !! | ATACAAGATTAACATAAACA+GGG | - | chr8_3:1377127-1377146 | Msa1268380:intron | 20.0% |
| !!! | ATGATGATATGTTTTTTATG+AGG | + | chr8_3:1377633-1377652 | None:intergenic | 20.0% |
| !!! | TGCTTGTTATGATTATGAAA+GGG | + | chr8_3:1375514-1375533 | None:intergenic | 25.0% |
| !!! | TTGCTTGTTATGATTATGAA+AGG | + | chr8_3:1375515-1375534 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTGAGAAACAG+AGG | - | chr8_3:1375991-1376010 | Msa1268380:CDS | 25.0% |
| ! | ATAATCAAGATATTAACGTG+TGG | - | chr8_3:1376093-1376112 | Msa1268380:intron | 25.0% |
| ! | TTATGTACAAAAATGTTTCG+TGG | - | chr8_3:1376131-1376150 | Msa1268380:intron | 25.0% |
| ! | CATAATCAACTGCAAAAATA+TGG | - | chr8_3:1376185-1376204 | Msa1268380:CDS | 25.0% |
| !!! | ATGTAGTTTGTTTTTGTCAA+AGG | - | chr8_3:1376267-1376286 | Msa1268380:intron | 25.0% |
| ! | TAGATTGTTACTAAATCATG+AGG | + | chr8_3:1376587-1376606 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTTGAATT+AGG | - | chr8_3:1376636-1376655 | Msa1268380:intron | 25.0% |
| ! | CATGATTTAATTACCTTGTT+TGG | + | chr8_3:1376701-1376720 | None:intergenic | 25.0% |
| !!! | AATTAATTTGTACCAAAGTG+TGG | + | chr8_3:1376875-1376894 | None:intergenic | 25.0% |
| ! | AGTGTTTGAATTATTATGGT+TGG | + | chr8_3:1376899-1376918 | None:intergenic | 25.0% |
| !!! | AGGAAGTGTTTGAATTATTA+TGG | + | chr8_3:1376903-1376922 | None:intergenic | 25.0% |
| ! | CTCATTCATTTCAATTGATA+AGG | - | chr8_3:1376962-1376981 | Msa1268380:intron | 25.0% |
| !!! | TGCTTGTTATGATTATGAAA+GGG | + | chr8_3:1375514-1375533 | None:intergenic | 25.0% |
| !!! | TTGCTTGTTATGATTATGAA+AGG | + | chr8_3:1375515-1375534 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTGAGAAACAG+AGG | - | chr8_3:1375991-1376010 | Msa1268380:CDS | 25.0% |
| ! | ATAATCAAGATATTAACGTG+TGG | - | chr8_3:1376093-1376112 | Msa1268380:intron | 25.0% |
| ! | TTATGTACAAAAATGTTTCG+TGG | - | chr8_3:1376131-1376150 | Msa1268380:intron | 25.0% |
| ! | CATAATCAACTGCAAAAATA+TGG | - | chr8_3:1376185-1376204 | Msa1268380:CDS | 25.0% |
| !!! | ATGTAGTTTGTTTTTGTCAA+AGG | - | chr8_3:1376267-1376286 | Msa1268380:intron | 25.0% |
| ! | TAGATTGTTACTAAATCATG+AGG | + | chr8_3:1376587-1376606 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTTGAATT+AGG | - | chr8_3:1376636-1376655 | Msa1268380:intron | 25.0% |
| ! | CATGATTTAATTACCTTGTT+TGG | + | chr8_3:1376701-1376720 | None:intergenic | 25.0% |
| !!! | AATTAATTTGTACCAAAGTG+TGG | + | chr8_3:1376875-1376894 | None:intergenic | 25.0% |
| ! | AGTGTTTGAATTATTATGGT+TGG | + | chr8_3:1376899-1376918 | None:intergenic | 25.0% |
| !!! | AGGAAGTGTTTGAATTATTA+TGG | + | chr8_3:1376903-1376922 | None:intergenic | 25.0% |
| ! | CTCATTCATTTCAATTGATA+AGG | - | chr8_3:1376962-1376981 | Msa1268380:intron | 25.0% |
| TGTTATGATTATGAAAGGGT+TGG | + | chr8_3:1375510-1375529 | None:intergenic | 30.0% | |
| ! | TTTGGTTAATTTCTGAGAGA+GGG | + | chr8_3:1375540-1375559 | None:intergenic | 30.0% |
| AGAGTATGTTAAAGAAATCG+AGG | - | chr8_3:1375594-1375613 | Msa1268380:three_prime_UTR | 30.0% | |
| TGATTCCTTATAGAACCATT+TGG | + | chr8_3:1375819-1375838 | None:intergenic | 30.0% | |
| AAAACAGCTGTTGAATTATG+TGG | - | chr8_3:1375873-1375892 | Msa1268380:intron | 30.0% | |
| TTATATGTATTTCAGCTAGC+TGG | - | chr8_3:1376443-1376462 | Msa1268380:intron | 30.0% | |
| TATATGTATTTCAGCTAGCT+GGG | - | chr8_3:1376444-1376463 | Msa1268380:intron | 30.0% | |
| CATTTCAATTGATAAGGGTA+AGG | - | chr8_3:1376968-1376987 | Msa1268380:intron | 30.0% | |
| AAGAGTTATCAAACTTGAGA+GGG | + | chr8_3:1377037-1377056 | None:intergenic | 30.0% | |
| TAAGAGTTATCAAACTTGAG+AGG | + | chr8_3:1377038-1377057 | None:intergenic | 30.0% | |
| AAACAGGGAACTAATGAAAT+TGG | - | chr8_3:1377142-1377161 | Msa1268380:intron | 30.0% | |
| CATAGAGTTCAACATATTTG+CGG | + | chr8_3:1377226-1377245 | None:intergenic | 30.0% | |
| ATATGTTGAACTCTATGCTA+AGG | - | chr8_3:1377229-1377248 | Msa1268380:intron | 30.0% | |
| TGTTATGATTATGAAAGGGT+TGG | + | chr8_3:1375510-1375529 | None:intergenic | 30.0% | |
| ! | TTTGGTTAATTTCTGAGAGA+GGG | + | chr8_3:1375540-1375559 | None:intergenic | 30.0% |
| AGAGTATGTTAAAGAAATCG+AGG | - | chr8_3:1375594-1375613 | Msa1268380:three_prime_UTR | 30.0% | |
| TGATTCCTTATAGAACCATT+TGG | + | chr8_3:1375819-1375838 | None:intergenic | 30.0% | |
| AAAACAGCTGTTGAATTATG+TGG | - | chr8_3:1375873-1375892 | Msa1268380:intron | 30.0% | |
| TTATATGTATTTCAGCTAGC+TGG | - | chr8_3:1376443-1376462 | Msa1268380:intron | 30.0% | |
| TATATGTATTTCAGCTAGCT+GGG | - | chr8_3:1376444-1376463 | Msa1268380:intron | 30.0% | |
| CATTTCAATTGATAAGGGTA+AGG | - | chr8_3:1376968-1376987 | Msa1268380:intron | 30.0% | |
| AAGAGTTATCAAACTTGAGA+GGG | + | chr8_3:1377037-1377056 | None:intergenic | 30.0% | |
| TAAGAGTTATCAAACTTGAG+AGG | + | chr8_3:1377038-1377057 | None:intergenic | 30.0% | |
| AAACAGGGAACTAATGAAAT+TGG | - | chr8_3:1377142-1377161 | Msa1268380:intron | 30.0% | |
| CATAGAGTTCAACATATTTG+CGG | + | chr8_3:1377226-1377245 | None:intergenic | 30.0% | |
| ATATGTTGAACTCTATGCTA+AGG | - | chr8_3:1377229-1377248 | Msa1268380:intron | 30.0% | |
| ! | CTTTGGTTAATTTCTGAGAG+AGG | + | chr8_3:1375541-1375560 | None:intergenic | 35.0% |
| CATATTTAGCCATACTTGCA+AGG | + | chr8_3:1375564-1375583 | None:intergenic | 35.0% | |
| GTATGTTAAAGAAATCGAGG+AGG | - | chr8_3:1375597-1375616 | Msa1268380:three_prime_UTR | 35.0% | |
| ATATGTATTTCAGCTAGCTG+GGG | - | chr8_3:1376445-1376464 | Msa1268380:intron | 35.0% | |
| ATGTACTAGTACCTTTCTTC+CGG | + | chr8_3:1376516-1376535 | None:intergenic | 35.0% | |
| ! | TAATTACCTTGTTTGGCATC+TGG | + | chr8_3:1376694-1376713 | None:intergenic | 35.0% |
| ! | AAGAGAGATCTTTTATCGCA+TGG | - | chr8_3:1376812-1376831 | Msa1268380:intron | 35.0% |
| ! | AGAGAGATCTTTTATCGCAT+GGG | - | chr8_3:1376813-1376832 | Msa1268380:intron | 35.0% |
| AAAGATCGCTCTAACTTTGA+AGG | - | chr8_3:1376996-1377015 | Msa1268380:intron | 35.0% | |
| CACAAGAAACTCTCTGAATT+AGG | - | chr8_3:1377417-1377436 | Msa1268380:CDS | 35.0% | |
| TTATCGTTCTCAATTGGCTA+AGG | - | chr8_3:1377458-1377477 | Msa1268380:intron | 35.0% | |
| ! | CTTTGGTTAATTTCTGAGAG+AGG | + | chr8_3:1375541-1375560 | None:intergenic | 35.0% |
| CATATTTAGCCATACTTGCA+AGG | + | chr8_3:1375564-1375583 | None:intergenic | 35.0% | |
| GTATGTTAAAGAAATCGAGG+AGG | - | chr8_3:1375597-1375616 | Msa1268380:three_prime_UTR | 35.0% | |
| ATATGTATTTCAGCTAGCTG+GGG | - | chr8_3:1376445-1376464 | Msa1268380:intron | 35.0% | |
| ATGTACTAGTACCTTTCTTC+CGG | + | chr8_3:1376516-1376535 | None:intergenic | 35.0% | |
| ! | TAATTACCTTGTTTGGCATC+TGG | + | chr8_3:1376694-1376713 | None:intergenic | 35.0% |
| ! | AAGAGAGATCTTTTATCGCA+TGG | - | chr8_3:1376812-1376831 | Msa1268380:intron | 35.0% |
| ! | AGAGAGATCTTTTATCGCAT+GGG | - | chr8_3:1376813-1376832 | Msa1268380:intron | 35.0% |
| AAAGATCGCTCTAACTTTGA+AGG | - | chr8_3:1376996-1377015 | Msa1268380:intron | 35.0% | |
| CACAAGAAACTCTCTGAATT+AGG | - | chr8_3:1377417-1377436 | Msa1268380:CDS | 35.0% | |
| TTATCGTTCTCAATTGGCTA+AGG | - | chr8_3:1377458-1377477 | Msa1268380:intron | 35.0% | |
| TAACCAAAGCCTTGCAAGTA+TGG | - | chr8_3:1375552-1375571 | Msa1268380:three_prime_UTR | 40.0% | |
| ATTTATAGGTGGCATGATGC+TGG | - | chr8_3:1375762-1375781 | Msa1268380:CDS | 40.0% | |
| TACGACGCAAAAACAAGAAC+AGG | - | chr8_3:1375789-1375808 | Msa1268380:CDS | 40.0% | |
| ACGACGCAAAAACAAGAACA+GGG | - | chr8_3:1375790-1375809 | Msa1268380:CDS | 40.0% | |
| GAATTATGTGGTCAGTGAGA+CGG | - | chr8_3:1375885-1375904 | Msa1268380:intron | 40.0% | |
| TTGAGAAACAGAGGAAGTGA+AGG | - | chr8_3:1376000-1376019 | Msa1268380:CDS | 40.0% | |
| ACACCCCAAAGTTTCATATG+CGG | - | chr8_3:1376027-1376046 | Msa1268380:CDS | 40.0% | |
| AGGTCCGCATATGAAACTTT+GGG | + | chr8_3:1376034-1376053 | None:intergenic | 40.0% | |
| AAGGTCCGCATATGAAACTT+TGG | + | chr8_3:1376035-1376054 | None:intergenic | 40.0% | |
| GATATTAACGTGTGGAGTCA+TGG | - | chr8_3:1376101-1376120 | Msa1268380:intron | 40.0% | |
| CCAACTATTCACTTTGTTCC+CGG | - | chr8_3:1376494-1376513 | Msa1268380:intron | 40.0% | |
| TGTACTAGTACCTTTCTTCC+GGG | + | chr8_3:1376515-1376534 | None:intergenic | 40.0% | |
| TCATTGGAATCTCCACAAGA+AGG | - | chr8_3:1376661-1376680 | Msa1268380:intron | 40.0% | |
| AAAGACATTGTAGCTCTCTC+CGG | - | chr8_3:1376846-1376865 | Msa1268380:intron | 40.0% | |
| ! | GCTCTAACTTTGAAGGTCAA+TGG | - | chr8_3:1377003-1377022 | Msa1268380:intron | 40.0% |
| ATTGAAGCTTCCTACAGACA+AGG | - | chr8_3:1377178-1377197 | Msa1268380:CDS | 40.0% | |
| TCAACATATTTGCGGAATGC+AGG | + | chr8_3:1377218-1377237 | None:intergenic | 40.0% | |
| TCTGAATTAGGCTTCAATCC+CGG | - | chr8_3:1377429-1377448 | Msa1268380:CDS | 40.0% | |
| TGGCAGTTATCGTTCTCAAT+TGG | - | chr8_3:1377452-1377471 | Msa1268380:intron | 40.0% | |
| TAACCAAAGCCTTGCAAGTA+TGG | - | chr8_3:1375552-1375571 | Msa1268380:three_prime_UTR | 40.0% | |
| ATTTATAGGTGGCATGATGC+TGG | - | chr8_3:1375762-1375781 | Msa1268380:CDS | 40.0% | |
| TACGACGCAAAAACAAGAAC+AGG | - | chr8_3:1375789-1375808 | Msa1268380:CDS | 40.0% | |
| ACGACGCAAAAACAAGAACA+GGG | - | chr8_3:1375790-1375809 | Msa1268380:CDS | 40.0% | |
| GAATTATGTGGTCAGTGAGA+CGG | - | chr8_3:1375885-1375904 | Msa1268380:intron | 40.0% | |
| TTGAGAAACAGAGGAAGTGA+AGG | - | chr8_3:1376000-1376019 | Msa1268380:CDS | 40.0% | |
| ACACCCCAAAGTTTCATATG+CGG | - | chr8_3:1376027-1376046 | Msa1268380:CDS | 40.0% | |
| AGGTCCGCATATGAAACTTT+GGG | + | chr8_3:1376034-1376053 | None:intergenic | 40.0% | |
| AAGGTCCGCATATGAAACTT+TGG | + | chr8_3:1376035-1376054 | None:intergenic | 40.0% | |
| GATATTAACGTGTGGAGTCA+TGG | - | chr8_3:1376101-1376120 | Msa1268380:intron | 40.0% | |
| CCAACTATTCACTTTGTTCC+CGG | - | chr8_3:1376494-1376513 | Msa1268380:intron | 40.0% | |
| TGTACTAGTACCTTTCTTCC+GGG | + | chr8_3:1376515-1376534 | None:intergenic | 40.0% | |
| TCATTGGAATCTCCACAAGA+AGG | - | chr8_3:1376661-1376680 | Msa1268380:intron | 40.0% | |
| AAAGACATTGTAGCTCTCTC+CGG | - | chr8_3:1376846-1376865 | Msa1268380:intron | 40.0% | |
| ! | GCTCTAACTTTGAAGGTCAA+TGG | - | chr8_3:1377003-1377022 | Msa1268380:intron | 40.0% |
| ATTGAAGCTTCCTACAGACA+AGG | - | chr8_3:1377178-1377197 | Msa1268380:CDS | 40.0% | |
| TCAACATATTTGCGGAATGC+AGG | + | chr8_3:1377218-1377237 | None:intergenic | 40.0% | |
| TCTGAATTAGGCTTCAATCC+CGG | - | chr8_3:1377429-1377448 | Msa1268380:CDS | 40.0% | |
| TGGCAGTTATCGTTCTCAAT+TGG | - | chr8_3:1377452-1377471 | Msa1268380:intron | 40.0% | |
| TAGCCATACTTGCAAGGCTT+TGG | + | chr8_3:1375558-1375577 | None:intergenic | 45.0% | |
| TACGCTAATCGTAGCATGAG+AGG | + | chr8_3:1375667-1375686 | None:intergenic | 45.0% | |
| CGACGCAAAAACAAGAACAG+GGG | - | chr8_3:1375791-1375810 | Msa1268380:CDS | 45.0% | |
| GACGCAAAAACAAGAACAGG+GGG | - | chr8_3:1375792-1375811 | Msa1268380:CDS | 45.0% | |
| ! | GGGGTCCAAATGGTTCTATA+AGG | - | chr8_3:1375811-1375830 | Msa1268380:CDS | 45.0% |
| CTGAACCATGCTGCTAACAA+GGG | - | chr8_3:1375846-1375865 | Msa1268380:intron | 45.0% | |
| GGTCCGCATATGAAACTTTG+GGG | + | chr8_3:1376033-1376052 | None:intergenic | 45.0% | |
| TTCATATGCGGACCTTTACC+AGG | - | chr8_3:1376039-1376058 | Msa1268380:CDS | 45.0% | |
| CCGGGAACAAAGTGAATAGT+TGG | + | chr8_3:1376497-1376516 | None:intergenic | 45.0% | |
| TCACTTTGTTCCCGGAAGAA+AGG | - | chr8_3:1376502-1376521 | Msa1268380:intron | 45.0% | |
| ! | TACCTTGTTTGGCATCTGGA+AGG | + | chr8_3:1376690-1376709 | None:intergenic | 45.0% |
| ! | TCAACTAGAGCCTTGTCTGT+AGG | + | chr8_3:1377191-1377210 | None:intergenic | 45.0% |
| TTGAGAACGATAACTGCCAC+CGG | + | chr8_3:1377451-1377470 | None:intergenic | 45.0% | |
| TGAGCTCAAGTAAGTAACCC+AGG | + | chr8_3:1377521-1377540 | None:intergenic | 45.0% | |
| TAGCCATACTTGCAAGGCTT+TGG | + | chr8_3:1375558-1375577 | None:intergenic | 45.0% | |
| TACGCTAATCGTAGCATGAG+AGG | + | chr8_3:1375667-1375686 | None:intergenic | 45.0% | |
| CGACGCAAAAACAAGAACAG+GGG | - | chr8_3:1375791-1375810 | Msa1268380:CDS | 45.0% | |
| GACGCAAAAACAAGAACAGG+GGG | - | chr8_3:1375792-1375811 | Msa1268380:CDS | 45.0% | |
| ! | GGGGTCCAAATGGTTCTATA+AGG | - | chr8_3:1375811-1375830 | Msa1268380:CDS | 45.0% |
| CTGAACCATGCTGCTAACAA+GGG | - | chr8_3:1375846-1375865 | Msa1268380:intron | 45.0% | |
| GGTCCGCATATGAAACTTTG+GGG | + | chr8_3:1376033-1376052 | None:intergenic | 45.0% | |
| TTCATATGCGGACCTTTACC+AGG | - | chr8_3:1376039-1376058 | Msa1268380:CDS | 45.0% | |
| CCGGGAACAAAGTGAATAGT+TGG | + | chr8_3:1376497-1376516 | None:intergenic | 45.0% | |
| TCACTTTGTTCCCGGAAGAA+AGG | - | chr8_3:1376502-1376521 | Msa1268380:intron | 45.0% | |
| ! | TACCTTGTTTGGCATCTGGA+AGG | + | chr8_3:1376690-1376709 | None:intergenic | 45.0% |
| ! | TCAACTAGAGCCTTGTCTGT+AGG | + | chr8_3:1377191-1377210 | None:intergenic | 45.0% |
| TTGAGAACGATAACTGCCAC+CGG | + | chr8_3:1377451-1377470 | None:intergenic | 45.0% | |
| TGAGCTCAAGTAAGTAACCC+AGG | + | chr8_3:1377521-1377540 | None:intergenic | 45.0% | |
| !! | AAAATTAATTAAACAAATTA+AGG | + | chr8_3:1375917-1375936 | None:intergenic | 5.0% |
| !! | AAAATTAATTAAACAAATTA+AGG | + | chr8_3:1375917-1375936 | None:intergenic | 5.0% |
| ACAAGAACAGGGGGTCCAAA+TGG | - | chr8_3:1375801-1375820 | Msa1268380:CDS | 50.0% | |
| GCTGAACCATGCTGCTAACA+AGG | - | chr8_3:1375845-1375864 | Msa1268380:intron | 50.0% | |
| TCAAGCCCTTGTTAGCAGCA+TGG | + | chr8_3:1375854-1375873 | None:intergenic | 50.0% | |
| TTATGTGGTCAGTGAGACGG+TGG | - | chr8_3:1375888-1375907 | Msa1268380:intron | 50.0% | |
| TCCTCGCACGTGTGCTAAAA+AGG | - | chr8_3:1376387-1376406 | Msa1268380:CDS | 50.0% | |
| CCTCGCACGTGTGCTAAAAA+GGG | - | chr8_3:1376388-1376407 | Msa1268380:CDS | 50.0% | |
| ATTTCAGCTAGCTGGGGTTG+TGG | - | chr8_3:1376451-1376470 | Msa1268380:intron | 50.0% | |
| TTGTACCAAAGTGTGGCCTC+CGG | + | chr8_3:1376868-1376887 | None:intergenic | 50.0% | |
| GAATTAGGCTTCAATCCCGG+TGG | - | chr8_3:1377432-1377451 | Msa1268380:CDS | 50.0% | |
| TGAGAACGATAACTGCCACC+GGG | + | chr8_3:1377450-1377469 | None:intergenic | 50.0% | |
| CAATTGGCTAAGGCAGCGTT+AGG | - | chr8_3:1377468-1377487 | Msa1268380:intron | 50.0% | |
| TGCCTCAACTGTTGTGATCC+TGG | - | chr8_3:1377500-1377519 | Msa1268380:intron | 50.0% | |
| GCCTCAACTGTTGTGATCCT+GGG | - | chr8_3:1377501-1377520 | Msa1268380:intron | 50.0% | |
| ACCCAGGATCACAACAGTTG+AGG | + | chr8_3:1377505-1377524 | None:intergenic | 50.0% | |
| ACAAGAACAGGGGGTCCAAA+TGG | - | chr8_3:1375801-1375820 | Msa1268380:CDS | 50.0% | |
| GCTGAACCATGCTGCTAACA+AGG | - | chr8_3:1375845-1375864 | Msa1268380:intron | 50.0% | |
| TCAAGCCCTTGTTAGCAGCA+TGG | + | chr8_3:1375854-1375873 | None:intergenic | 50.0% | |
| TTATGTGGTCAGTGAGACGG+TGG | - | chr8_3:1375888-1375907 | Msa1268380:intron | 50.0% | |
| TCCTCGCACGTGTGCTAAAA+AGG | - | chr8_3:1376387-1376406 | Msa1268380:CDS | 50.0% | |
| CCTCGCACGTGTGCTAAAAA+GGG | - | chr8_3:1376388-1376407 | Msa1268380:CDS | 50.0% | |
| ATTTCAGCTAGCTGGGGTTG+TGG | - | chr8_3:1376451-1376470 | Msa1268380:intron | 50.0% | |
| TTGTACCAAAGTGTGGCCTC+CGG | + | chr8_3:1376868-1376887 | None:intergenic | 50.0% | |
| GAATTAGGCTTCAATCCCGG+TGG | - | chr8_3:1377432-1377451 | Msa1268380:CDS | 50.0% | |
| TGAGAACGATAACTGCCACC+GGG | + | chr8_3:1377450-1377469 | None:intergenic | 50.0% | |
| CAATTGGCTAAGGCAGCGTT+AGG | - | chr8_3:1377468-1377487 | Msa1268380:intron | 50.0% | |
| TGCCTCAACTGTTGTGATCC+TGG | - | chr8_3:1377500-1377519 | Msa1268380:intron | 50.0% | |
| GCCTCAACTGTTGTGATCCT+GGG | - | chr8_3:1377501-1377520 | Msa1268380:intron | 50.0% | |
| ACCCAGGATCACAACAGTTG+AGG | + | chr8_3:1377505-1377524 | None:intergenic | 50.0% | |
| !! | CCCTTTTTAGCACACGTGCG+AGG | + | chr8_3:1376391-1376410 | None:intergenic | 55.0% |
| GTTGTGGCTGTAGAGGTCAC+TGG | - | chr8_3:1376467-1376486 | Msa1268380:intron | 55.0% | |
| TCTGGAAGGCGACCTTCTTG+TGG | + | chr8_3:1376676-1376695 | None:intergenic | 55.0% | |
| CGCCTTCCAGATGCCAAACA+AGG | - | chr8_3:1376685-1376704 | Msa1268380:intron | 55.0% | |
| GACATTGTAGCTCTCTCCGG+AGG | - | chr8_3:1376849-1376868 | Msa1268380:intron | 55.0% | |
| GGCTAAGGCAGCGTTAGGAA+TGG | - | chr8_3:1377473-1377492 | Msa1268380:intron | 55.0% | |
| !! | CCCTTTTTAGCACACGTGCG+AGG | + | chr8_3:1376391-1376410 | None:intergenic | 55.0% |
| GTTGTGGCTGTAGAGGTCAC+TGG | - | chr8_3:1376467-1376486 | Msa1268380:intron | 55.0% | |
| TCTGGAAGGCGACCTTCTTG+TGG | + | chr8_3:1376676-1376695 | None:intergenic | 55.0% | |
| CGCCTTCCAGATGCCAAACA+AGG | - | chr8_3:1376685-1376704 | Msa1268380:intron | 55.0% | |
| GACATTGTAGCTCTCTCCGG+AGG | - | chr8_3:1376849-1376868 | Msa1268380:intron | 55.0% | |
| GGCTAAGGCAGCGTTAGGAA+TGG | - | chr8_3:1377473-1377492 | Msa1268380:intron | 55.0% | |
| AGCTGGGGTTGTGGCTGTAG+AGG | - | chr8_3:1376460-1376479 | Msa1268380:intron | 60.0% | |
| GTGGCTGTAGAGGTCACTGG+TGG | - | chr8_3:1376470-1376489 | Msa1268380:intron | 60.0% | |
| TCTCTCCGGAGGCCACACTT+TGG | - | chr8_3:1376860-1376879 | Msa1268380:intron | 60.0% | |
| AGCTGGGGTTGTGGCTGTAG+AGG | - | chr8_3:1376460-1376479 | Msa1268380:intron | 60.0% | |
| GTGGCTGTAGAGGTCACTGG+TGG | - | chr8_3:1376470-1376489 | Msa1268380:intron | 60.0% | |
| TCTCTCCGGAGGCCACACTT+TGG | - | chr8_3:1376860-1376879 | Msa1268380:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 1375475 | 1377748 | 1375475 | ID=Msa1268380;Name=Msa1268380 |
| chr8_3 | mRNA | 1375475 | 1377748 | 1375475 | ID=Msa1268380-mRNA-1;Parent=Msa1268380;Name=Msa1268380-mRNA-1;_AED=0.13;_eAED=0.13;_QI=96|1|1|1|1|1|9|191|281 |
| chr8_3 | exon | 1375475 | 1375842 | 1375475 | ID=Msa1268380-mRNA-1:exon:356;Parent=Msa1268380-mRNA-1 |
| chr8_3 | exon | 1375973 | 1376075 | 1375973 | ID=Msa1268380-mRNA-1:exon:355;Parent=Msa1268380-mRNA-1 |
| chr8_3 | exon | 1376160 | 1376239 | 1376160 | ID=Msa1268380-mRNA-1:exon:354;Parent=Msa1268380-mRNA-1 |
| chr8_3 | exon | 1376342 | 1376424 | 1376342 | ID=Msa1268380-mRNA-1:exon:353;Parent=Msa1268380-mRNA-1 |
| chr8_3 | exon | 1376517 | 1376565 | 1376517 | ID=Msa1268380-mRNA-1:exon:352;Parent=Msa1268380-mRNA-1 |
| chr8_3 | exon | 1376700 | 1376765 | 1376700 | ID=Msa1268380-mRNA-1:exon:351;Parent=Msa1268380-mRNA-1 |
| chr8_3 | exon | 1377163 | 1377212 | 1377163 | ID=Msa1268380-mRNA-1:exon:350;Parent=Msa1268380-mRNA-1 |
| chr8_3 | exon | 1377329 | 1377453 | 1377329 | ID=Msa1268380-mRNA-1:exon:349;Parent=Msa1268380-mRNA-1 |
| chr8_3 | exon | 1377540 | 1377748 | 1377540 | ID=Msa1268380-mRNA-1:exon:348;Parent=Msa1268380-mRNA-1 |
| chr8_3 | five_prime_UTR | 1377653 | 1377748 | 1377653 | ID=Msa1268380-mRNA-1:five_prime_utr;Parent=Msa1268380-mRNA-1 |
| chr8_3 | CDS | 1377540 | 1377652 | 1377540 | ID=Msa1268380-mRNA-1:cds;Parent=Msa1268380-mRNA-1 |
| chr8_3 | CDS | 1377329 | 1377453 | 1377329 | ID=Msa1268380-mRNA-1:cds;Parent=Msa1268380-mRNA-1 |
| chr8_3 | CDS | 1377163 | 1377212 | 1377163 | ID=Msa1268380-mRNA-1:cds;Parent=Msa1268380-mRNA-1 |
| chr8_3 | CDS | 1376700 | 1376765 | 1376700 | ID=Msa1268380-mRNA-1:cds;Parent=Msa1268380-mRNA-1 |
| chr8_3 | CDS | 1376517 | 1376565 | 1376517 | ID=Msa1268380-mRNA-1:cds;Parent=Msa1268380-mRNA-1 |
| chr8_3 | CDS | 1376342 | 1376424 | 1376342 | ID=Msa1268380-mRNA-1:cds;Parent=Msa1268380-mRNA-1 |
| chr8_3 | CDS | 1376160 | 1376239 | 1376160 | ID=Msa1268380-mRNA-1:cds;Parent=Msa1268380-mRNA-1 |
| chr8_3 | CDS | 1375973 | 1376075 | 1375973 | ID=Msa1268380-mRNA-1:cds;Parent=Msa1268380-mRNA-1 |
| chr8_3 | CDS | 1375666 | 1375842 | 1375666 | ID=Msa1268380-mRNA-1:cds;Parent=Msa1268380-mRNA-1 |
| chr8_3 | three_prime_UTR | 1375475 | 1375665 | 1375475 | ID=Msa1268380-mRNA-1:three_prime_utr;Parent=Msa1268380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
