Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800140 | XP_003612205.2 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800140 | sp|Q42564|APX3_ARATH | 73.745 | 259 | 68 | 0 | 1 | 259 | 1 | 259 | 6.28e-143 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800140 | G7JXJ2 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0800140 | 0.833054 | 6.647865e-56 | -8.615850e-47 |
| Msa0609300 | Msa0800140 | 0.846709 | 1.831536e-59 | -8.615850e-47 |
| Msa0691910 | Msa0800140 | 0.839939 | 1.173735e-57 | -8.615850e-47 |
| Msa0759010 | Msa0800140 | 0.974573 | 2.143828e-138 | -8.615850e-47 |
| Msa0782750 | Msa0800140 | 0.814909 | 1.211672e-51 | -8.615850e-47 |
| Msa0800140 | Msa0800170 | 0.990966 | 3.275778e-185 | -8.615850e-47 |
| Msa0800140 | Msa0800200 | 0.996121 | 1.204965e-223 | -8.615850e-47 |
| Msa0800140 | Msa0820380 | 0.805661 | 1.198545e-49 | -8.615850e-47 |
| Msa0800140 | Msa1268380 | 0.992977 | 1.185719e-196 | -8.615850e-47 |
| Msa0800140 | Msa1268410 | 0.988671 | 6.086047e-175 | -8.615850e-47 |
| Msa0800140 | Msa1268440 | 0.965851 | 3.829314e-125 | -8.615850e-47 |
| Msa0125210 | Msa0800140 | 0.817496 | 3.200003e-52 | -8.615850e-47 |
| Msa0155180 | Msa0800140 | 0.824390 | 8.285495e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800140 | MtrunA17_Chr5g0405731 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| Msa0800140 | MtrunA17_Chr4g0037131 | 72.043 | 279 | 73 | 1 | 6 | 279 | 7 | 285 | 7.58e-148 | 415 |
| Msa0800140 | MtrunA17_Chr4g0030171 | 64.583 | 240 | 84 | 1 | 6 | 244 | 8 | 247 | 1.60e-113 | 327 |
| Msa0800140 | MtrunA17_Chr3g0124821 | 49.425 | 261 | 105 | 6 | 13 | 246 | 100 | 360 | 1.52e-76 | 238 |
| Msa0800140 | MtrunA17_Chr3g0137751 | 37.860 | 243 | 127 | 6 | 11 | 243 | 86 | 314 | 4.01e-41 | 144 |
| Msa0800140 | MtrunA17_Chr7g0225221 | 29.278 | 263 | 141 | 10 | 35 | 256 | 60 | 318 | 3.14e-18 | 83.2 |
| Msa0800140 | MtrunA17_Chr4g0053871 | 28.854 | 253 | 135 | 7 | 32 | 243 | 59 | 307 | 1.17e-16 | 78.6 |
| Msa0800140 | MtrunA17_Chr1g0157051 | 29.225 | 284 | 133 | 13 | 22 | 253 | 46 | 313 | 2.03e-16 | 77.8 |
| Msa0800140 | MtrunA17_Chr4g0013721 | 27.208 | 283 | 136 | 9 | 15 | 242 | 113 | 380 | 7.75e-15 | 73.9 |
| Msa0800140 | MtrunA17_Chr6g0467161 | 27.203 | 261 | 133 | 10 | 31 | 247 | 76 | 323 | 1.16e-14 | 73.2 |
| Msa0800140 | MtrunA17_Chr7g0258811 | 24.719 | 267 | 151 | 9 | 22 | 242 | 91 | 353 | 1.78e-13 | 69.7 |
| Msa0800140 | MtrunA17_Chr5g0426581 | 31.928 | 166 | 79 | 5 | 27 | 158 | 113 | 278 | 1.20e-12 | 67.4 |
| Msa0800140 | MtrunA17_Chr3g0129061 | 26.087 | 253 | 133 | 9 | 34 | 242 | 62 | 304 | 2.78e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800140 | AT4G35000.1 | 73.745 | 259 | 68 | 0 | 1 | 259 | 1 | 259 | 6.39e-144 | 405 |
| Msa0800140 | AT4G35970.1 | 66.788 | 274 | 90 | 1 | 6 | 279 | 5 | 277 | 2.67e-135 | 384 |
| Msa0800140 | AT4G35970.2 | 72.018 | 218 | 60 | 1 | 6 | 223 | 5 | 221 | 3.04e-115 | 331 |
| Msa0800140 | AT3G09640.2 | 63.180 | 239 | 88 | 0 | 6 | 244 | 9 | 247 | 3.75e-109 | 316 |
| Msa0800140 | AT3G09640.1 | 63.180 | 239 | 88 | 0 | 6 | 244 | 9 | 247 | 3.75e-109 | 316 |
| Msa0800140 | AT1G07890.2 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800140 | AT1G07890.8 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800140 | AT1G07890.4 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800140 | AT1G07890.7 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800140 | AT1G07890.1 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800140 | AT1G07890.3 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800140 | AT1G07890.5 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 1.03e-104 | 305 |
| Msa0800140 | AT1G07890.6 | 59.583 | 240 | 96 | 1 | 6 | 244 | 8 | 247 | 3.81e-104 | 303 |
| Msa0800140 | AT4G08390.2 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa0800140 | AT4G08390.5 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa0800140 | AT4G08390.1 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.80e-78 | 241 |
| Msa0800140 | AT4G08390.3 | 49.042 | 261 | 106 | 6 | 13 | 246 | 105 | 365 | 1.27e-77 | 240 |
| Msa0800140 | AT1G77490.2 | 49.042 | 261 | 106 | 6 | 13 | 246 | 85 | 345 | 1.24e-75 | 237 |
| Msa0800140 | AT1G77490.1 | 49.042 | 261 | 106 | 6 | 13 | 246 | 85 | 345 | 1.58e-75 | 236 |
| Msa0800140 | AT4G08390.4 | 44.828 | 261 | 91 | 7 | 13 | 246 | 106 | 340 | 2.68e-64 | 205 |
| Msa0800140 | AT4G32320.1 | 37.288 | 236 | 124 | 6 | 18 | 243 | 102 | 323 | 1.96e-39 | 140 |
| Msa0800140 | AT4G17690.1 | 37.019 | 208 | 85 | 8 | 72 | 243 | 108 | 305 | 2.88e-22 | 94.7 |
| Msa0800140 | AT4G16270.1 | 30.496 | 282 | 123 | 12 | 23 | 249 | 73 | 336 | 2.09e-21 | 92.8 |
| Msa0800140 | AT1G49570.1 | 27.857 | 280 | 136 | 9 | 22 | 247 | 70 | 337 | 5.62e-19 | 85.9 |
| Msa0800140 | AT4G30170.1 | 30.620 | 258 | 127 | 10 | 31 | 243 | 58 | 308 | 2.79e-16 | 77.8 |
| Msa0800140 | AT4G09010.2 | 34.375 | 160 | 71 | 5 | 32 | 157 | 49 | 208 | 1.10e-15 | 75.9 |
| Msa0800140 | AT4G09010.1 | 34.375 | 160 | 71 | 5 | 32 | 157 | 114 | 273 | 2.73e-15 | 75.5 |
| Msa0800140 | AT5G14130.1 | 27.027 | 259 | 143 | 8 | 31 | 247 | 63 | 317 | 3.00e-15 | 75.1 |
| Msa0800140 | AT5G14130.2 | 27.027 | 259 | 143 | 8 | 31 | 247 | 104 | 358 | 5.04e-15 | 74.7 |
| Msa0800140 | AT4G09010.3 | 34.375 | 160 | 71 | 5 | 32 | 157 | 161 | 320 | 7.14e-15 | 74.3 |
| Msa0800140 | AT4G37530.1 | 26.966 | 267 | 139 | 9 | 32 | 249 | 59 | 318 | 2.74e-14 | 72.4 |
| Msa0800140 | AT5G42180.1 | 28.364 | 275 | 132 | 10 | 22 | 245 | 45 | 305 | 3.65e-14 | 71.6 |
| Msa0800140 | AT4G37520.1 | 26.592 | 267 | 140 | 9 | 32 | 249 | 59 | 318 | 5.37e-13 | 68.6 |
| Msa0800140 | AT3G49960.1 | 28.352 | 261 | 131 | 9 | 32 | 243 | 59 | 312 | 9.05e-13 | 67.8 |
| Msa0800140 | AT4G37530.2 | 32.022 | 178 | 99 | 7 | 32 | 191 | 59 | 232 | 2.06e-12 | 66.2 |
| Msa0800140 | AT5G17820.1 | 26.296 | 270 | 134 | 12 | 10 | 230 | 29 | 282 | 2.16e-12 | 66.6 |
| Msa0800140 | AT5G17820.2 | 26.296 | 270 | 134 | 12 | 10 | 230 | 82 | 335 | 7.29e-12 | 65.5 |
| Msa0800140 | AT5G15180.1 | 26.937 | 271 | 137 | 9 | 26 | 247 | 58 | 316 | 9.22e-12 | 65.1 |
Find 71 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAGGGAACTAATGAAAT+TGG | 0.251753 | 5_3:-13547608 | Msa0800140:intron |
| TGCCTCAACTGTTGTGATCC+TGG | 0.267857 | 5_3:-13547250 | Msa0800140:CDS |
| TAACCAAAGCCTTGCAAGTA+TGG | 0.276478 | 5_3:-13549198 | Msa0800140:exon |
| CATGATTTAATTACCTTGTT+TGG | 0.286806 | 5_3:+13548052 | None:intergenic |
| CACAAGAAACTCTCTGAATT+AGG | 0.339734 | 5_3:-13547333 | Msa0800140:CDS |
| ATGTACTAGTACCTTTCTTC+CGG | 0.351786 | 5_3:+13548237 | None:intergenic |
| TAGCCATACTTGCAAGGCTT+TGG | 0.388173 | 5_3:+13549195 | None:intergenic |
| CCAACTATTCACTTTGTTCC+CGG | 0.389997 | 5_3:-13548256 | Msa0800140:CDS |
| AGGTCCGCATATGAAACTTT+GGG | 0.390870 | 5_3:+13548719 | None:intergenic |
| TTATATGTATTTCAGCTAGC+TGG | 0.393811 | 5_3:-13548307 | Msa0800140:intron |
| TAATTACCTTGTTTGGCATC+TGG | 0.400655 | 5_3:+13548059 | None:intergenic |
| TGATTCCTTATAGAACCATT+TGG | 0.401526 | 5_3:+13548934 | None:intergenic |
| GCCTCAACTGTTGTGATCCT+GGG | 0.428816 | 5_3:-13547249 | Msa0800140:CDS |
| AAAGATCGCTCTAACTTTGA+AGG | 0.430021 | 5_3:-13547754 | Msa0800140:CDS |
| AAGGTCCGCATATGAAACTT+TGG | 0.433809 | 5_3:+13548718 | None:intergenic |
| TGTACTAGTACCTTTCTTCC+GGG | 0.435662 | 5_3:+13548238 | None:intergenic |
| TGGCAGTTATCGTTCTCAAT+TGG | 0.438208 | 5_3:-13547298 | Msa0800140:CDS |
| CATAGAGTTCAACATATTTG+CGG | 0.439517 | 5_3:+13547527 | None:intergenic |
| TCAACATATTTGCGGAATGC+AGG | 0.460562 | 5_3:+13547535 | None:intergenic |
| TCACTTTGTTCCCGGAAGAA+AGG | 0.460671 | 5_3:-13548248 | Msa0800140:intron |
| TATATGTATTTCAGCTAGCT+GGG | 0.463788 | 5_3:-13548306 | Msa0800140:intron |
| TTGCTTGTTATGATTATGAA+AGG | 0.466835 | 5_3:+13549238 | None:intergenic |
| CAATTGGCTAAGGCAGCGTT+AGG | 0.473147 | 5_3:-13547282 | Msa0800140:CDS |
| GTTGTGGCTGTAGAGGTCAC+TGG | 0.475048 | 5_3:-13548283 | Msa0800140:CDS |
| AAAACAGCTGTTGAATTATG+TGG | 0.483315 | 5_3:-13548877 | Msa0800140:intron |
| CATATTTAGCCATACTTGCA+AGG | 0.494767 | 5_3:+13549189 | None:intergenic |
| AGCTGGGGTTGTGGCTGTAG+AGG | 0.496133 | 5_3:-13548290 | Msa0800140:CDS |
| GCTCTAACTTTGAAGGTCAA+TGG | 0.497264 | 5_3:-13547747 | Msa0800140:CDS |
| GGGGTCCAAATGGTTCTATA+AGG | 0.497436 | 5_3:-13548939 | Msa0800140:CDS |
| CCGGGAACAAAGTGAATAGT+TGG | 0.498623 | 5_3:+13548256 | None:intergenic |
| GCTGAACCATGCTGCTAACA+AGG | 0.508818 | 5_3:-13548905 | Msa0800140:CDS |
| ATTTCAGCTAGCTGGGGTTG+TGG | 0.511946 | 5_3:-13548299 | Msa0800140:intron |
| ATTATAAAATAACCTGGTAA+AGG | 0.515916 | 5_3:+13548699 | None:intergenic |
| TTCATATGCGGACCTTTACC+AGG | 0.516618 | 5_3:-13548711 | Msa0800140:intron |
| TCTGGAAGGCGACCTTCTTG+TGG | 0.517530 | 5_3:+13548077 | None:intergenic |
| TTGAGAAACAGAGGAAGTGA+AGG | 0.521165 | 5_3:-13548750 | Msa0800140:intron |
| TTTGGTTAATTTCTGAGAGA+GGG | 0.530694 | 5_3:+13549213 | None:intergenic |
| TCAAGCCCTTGTTAGCAGCA+TGG | 0.531740 | 5_3:+13548899 | None:intergenic |
| ATATGTTGAACTCTATGCTA+AGG | 0.543090 | 5_3:-13547521 | Msa0800140:intron |
| TTGTACCAAAGTGTGGCCTC+CGG | 0.545189 | 5_3:+13547885 | None:intergenic |
| AAAGACATTGTAGCTCTCTC+CGG | 0.548124 | 5_3:-13547904 | Msa0800140:CDS |
| CGCCTTCCAGATGCCAAACA+AGG | 0.549529 | 5_3:-13548065 | Msa0800140:intron |
| TTATCGTTCTCAATTGGCTA+AGG | 0.549693 | 5_3:-13547292 | Msa0800140:CDS |
| TGCTTGTTATGATTATGAAA+GGG | 0.553361 | 5_3:+13549239 | None:intergenic |
| ATTTATAGGTGGCATGATGC+TGG | 0.555051 | 5_3:-13548988 | Msa0800140:intron |
| TACCTTGTTTGGCATCTGGA+AGG | 0.559846 | 5_3:+13548063 | None:intergenic |
| CTTTGGTTAATTTCTGAGAG+AGG | 0.565568 | 5_3:+13549212 | None:intergenic |
| AATTAATTTGTACCAAAGTG+TGG | 0.573092 | 5_3:+13547878 | None:intergenic |
| GGCTAAGGCAGCGTTAGGAA+TGG | 0.573545 | 5_3:-13547277 | Msa0800140:CDS |
| TAAGAGTTATCAAACTTGAG+AGG | 0.573775 | 5_3:+13547715 | None:intergenic |
| TGTTATGATTATGAAAGGGT+TGG | 0.578122 | 5_3:+13549243 | None:intergenic |
| TTGAGAACGATAACTGCCAC+CGG | 0.582999 | 5_3:+13547302 | None:intergenic |
| AAGAGTTATCAAACTTGAGA+GGG | 0.589980 | 5_3:+13547716 | None:intergenic |
| TCTCTCCGGAGGCCACACTT+TGG | 0.591661 | 5_3:-13547890 | Msa0800140:intron |
| TCTGAATTAGGCTTCAATCC+CGG | 0.595170 | 5_3:-13547321 | Msa0800140:CDS |
| TACGCTAATCGTAGCATGAG+AGG | 0.599636 | 5_3:+13549086 | None:intergenic |
| GGTCCGCATATGAAACTTTG+GGG | 0.601066 | 5_3:+13548720 | None:intergenic |
| TCAACTAGAGCCTTGTCTGT+AGG | 0.607702 | 5_3:+13547562 | None:intergenic |
| ATTGAAGCTTCCTACAGACA+AGG | 0.615401 | 5_3:-13547572 | Msa0800140:CDS |
| CTGAACCATGCTGCTAACAA+GGG | 0.615953 | 5_3:-13548904 | Msa0800140:CDS |
| GACATTGTAGCTCTCTCCGG+AGG | 0.618468 | 5_3:-13547901 | Msa0800140:CDS |
| TCATTGGAATCTCCACAAGA+AGG | 0.637304 | 5_3:-13548089 | Msa0800140:CDS |
| ACCCAGGATCACAACAGTTG+AGG | 0.637431 | 5_3:+13547248 | None:intergenic |
| ATATGTATTTCAGCTAGCTG+GGG | 0.644095 | 5_3:-13548305 | Msa0800140:intron |
| TGAGCTCAAGTAAGTAACCC+AGG | 0.647120 | 5_3:+13547232 | None:intergenic |
| AGAGTATGTTAAAGAAATCG+AGG | 0.648519 | 5_3:-13549156 | Msa0800140:CDS |
| ACACCCCAAAGTTTCATATG+CGG | 0.685445 | 5_3:-13548723 | Msa0800140:CDS |
| TGAGAACGATAACTGCCACC+GGG | 0.688112 | 5_3:+13547303 | None:intergenic |
| GTGGCTGTAGAGGTCACTGG+TGG | 0.707904 | 5_3:-13548280 | Msa0800140:CDS |
| GAATTAGGCTTCAATCCCGG+TGG | 0.713172 | 5_3:-13547318 | Msa0800140:CDS |
| GTATGTTAAAGAAATCGAGG+AGG | 0.749911 | 5_3:-13549153 | Msa0800140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATATAGTATTGATTTAT+AGG | - | chr5_3:13547297-13547316 | Msa0800140:CDS | 10.0% |
| !! | AAAAAAATTATAAAATAACC+TGG | + | chr5_3:13547609-13547628 | None:intergenic | 10.0% |
| !!! | AATATATAGTATTGATTTAT+AGG | - | chr5_3:13547297-13547316 | Msa0800140:CDS | 10.0% |
| !! | AAAAAAATTATAAAATAACC+TGG | + | chr5_3:13547609-13547628 | None:intergenic | 10.0% |
| !! | TATGTATATGTTATAGTAAA+AGG | + | chr5_3:13547269-13547288 | None:intergenic | 15.0% |
| !! | AAGATTAATAAGCAAAAAAT+TGG | + | chr5_3:13547507-13547526 | None:intergenic | 15.0% |
| !!! | TTAATTCATATTCAATTTTG+TGG | + | chr5_3:13547863-13547882 | None:intergenic | 15.0% |
| !! | ATTAATCATGTGTAAAAATA+TGG | + | chr5_3:13547913-13547932 | None:intergenic | 15.0% |
| !!! | TATTTTTACACATGATTAAT+CGG | - | chr5_3:13547913-13547932 | Msa0800140:CDS | 15.0% |
| !! | ATTATTATAGTAGTATTATG+AGG | - | chr5_3:13548166-13548185 | Msa0800140:intron | 15.0% |
| !! | TGTATAAAAAACTATATTTC+AGG | - | chr5_3:13548326-13548345 | Msa0800140:intron | 15.0% |
| !! | TTCTTCAAGAAATATAATAA+AGG | + | chr5_3:13548472-13548491 | None:intergenic | 15.0% |
| !!! | TTGTTCTCTATTTTTTTTTT+TGG | - | chr5_3:13548825-13548844 | Msa0800140:intron | 15.0% |
| !!! | ATAGTATTATGTATTTTTTG+TGG | - | chr5_3:13548881-13548900 | Msa0800140:CDS | 15.0% |
| !!! | TAATGATTTTGAATTTTACT+AGG | - | chr5_3:13548908-13548927 | Msa0800140:CDS | 15.0% |
| !! | TATGTATATGTTATAGTAAA+AGG | + | chr5_3:13547269-13547288 | None:intergenic | 15.0% |
| !! | AAGATTAATAAGCAAAAAAT+TGG | + | chr5_3:13547507-13547526 | None:intergenic | 15.0% |
| !!! | TTAATTCATATTCAATTTTG+TGG | + | chr5_3:13547863-13547882 | None:intergenic | 15.0% |
| !! | ATTAATCATGTGTAAAAATA+TGG | + | chr5_3:13547913-13547932 | None:intergenic | 15.0% |
| !!! | TATTTTTACACATGATTAAT+CGG | - | chr5_3:13547913-13547932 | Msa0800140:CDS | 15.0% |
| !! | ATTATTATAGTAGTATTATG+AGG | - | chr5_3:13548166-13548185 | Msa0800140:intron | 15.0% |
| !! | TGTATAAAAAACTATATTTC+AGG | - | chr5_3:13548326-13548345 | Msa0800140:intron | 15.0% |
| !! | TTCTTCAAGAAATATAATAA+AGG | + | chr5_3:13548472-13548491 | None:intergenic | 15.0% |
| !!! | TTGTTCTCTATTTTTTTTTT+TGG | - | chr5_3:13548825-13548844 | Msa0800140:intron | 15.0% |
| !!! | ATAGTATTATGTATTTTTTG+TGG | - | chr5_3:13548881-13548900 | Msa0800140:CDS | 15.0% |
| !!! | TAATGATTTTGAATTTTACT+AGG | - | chr5_3:13548908-13548927 | Msa0800140:CDS | 15.0% |
| !!! | ATATAGTATTGATTTATAGG+TGG | - | chr5_3:13547300-13547319 | Msa0800140:CDS | 20.0% |
| !! | ATTATAAAATAACCTGGTAA+AGG | + | chr5_3:13547603-13547622 | None:intergenic | 20.0% |
| !! | AATTCACTTGAATAAATGAT+TGG | - | chr5_3:13547759-13547778 | Msa0800140:CDS | 20.0% |
| !! | CTAGATTAAGTTAAAGATTA+TGG | - | chr5_3:13547787-13547806 | Msa0800140:intron | 20.0% |
| !!! | TATTTTGAATTAGGATTCAT+TGG | - | chr5_3:13548194-13548213 | Msa0800140:intron | 20.0% |
| !! | TCATTCATTTCAATTGATAA+GGG | - | chr5_3:13548512-13548531 | Msa0800140:intron | 20.0% |
| !! | AATACAAGATTAACATAAAC+AGG | - | chr5_3:13548675-13548694 | Msa0800140:intron | 20.0% |
| !! | ATACAAGATTAACATAAACA+GGG | - | chr5_3:13548676-13548695 | Msa0800140:intron | 20.0% |
| !!! | ATGATGATATGTTTTTTATG+AGG | + | chr5_3:13549182-13549201 | None:intergenic | 20.0% |
| !!! | ATATAGTATTGATTTATAGG+TGG | - | chr5_3:13547300-13547319 | Msa0800140:CDS | 20.0% |
| !! | ATTATAAAATAACCTGGTAA+AGG | + | chr5_3:13547603-13547622 | None:intergenic | 20.0% |
| !! | AATTCACTTGAATAAATGAT+TGG | - | chr5_3:13547759-13547778 | Msa0800140:CDS | 20.0% |
| !! | CTAGATTAAGTTAAAGATTA+TGG | - | chr5_3:13547787-13547806 | Msa0800140:intron | 20.0% |
| !!! | TATTTTGAATTAGGATTCAT+TGG | - | chr5_3:13548194-13548213 | Msa0800140:intron | 20.0% |
| !! | TCATTCATTTCAATTGATAA+GGG | - | chr5_3:13548512-13548531 | Msa0800140:intron | 20.0% |
| !! | AATACAAGATTAACATAAAC+AGG | - | chr5_3:13548675-13548694 | Msa0800140:intron | 20.0% |
| !! | ATACAAGATTAACATAAACA+GGG | - | chr5_3:13548676-13548695 | Msa0800140:intron | 20.0% |
| !!! | ATGATGATATGTTTTTTATG+AGG | + | chr5_3:13549182-13549201 | None:intergenic | 20.0% |
| !!! | TGCTTGTTATGATTATGAAA+GGG | + | chr5_3:13547063-13547082 | None:intergenic | 25.0% |
| !!! | TTGCTTGTTATGATTATGAA+AGG | + | chr5_3:13547064-13547083 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTGAGAAACAG+AGG | - | chr5_3:13547540-13547559 | Msa0800140:CDS | 25.0% |
| ! | ATAATCAAGATATTAACGTG+TGG | - | chr5_3:13547642-13547661 | Msa0800140:intron | 25.0% |
| ! | TTATGTACAAAAATGTTTCG+TGG | - | chr5_3:13547680-13547699 | Msa0800140:intron | 25.0% |
| ! | CATAATCAACTGCAAAAATA+TGG | - | chr5_3:13547734-13547753 | Msa0800140:CDS | 25.0% |
| !!! | ATGTAGTTTGTTTTTGTCAA+AGG | - | chr5_3:13547816-13547835 | Msa0800140:intron | 25.0% |
| ! | TAGATTGTTACTAAATCATG+AGG | + | chr5_3:13548136-13548155 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTTGAATT+AGG | - | chr5_3:13548185-13548204 | Msa0800140:intron | 25.0% |
| ! | CATGATTTAATTACCTTGTT+TGG | + | chr5_3:13548250-13548269 | None:intergenic | 25.0% |
| !!! | AATTAATTTGTACCAAAGTG+TGG | + | chr5_3:13548424-13548443 | None:intergenic | 25.0% |
| ! | AGTGTTTGAATTATTATGGT+TGG | + | chr5_3:13548448-13548467 | None:intergenic | 25.0% |
| !!! | AGGAAGTGTTTGAATTATTA+TGG | + | chr5_3:13548452-13548471 | None:intergenic | 25.0% |
| ! | CTCATTCATTTCAATTGATA+AGG | - | chr5_3:13548511-13548530 | Msa0800140:intron | 25.0% |
| !!! | TGCTTGTTATGATTATGAAA+GGG | + | chr5_3:13547063-13547082 | None:intergenic | 25.0% |
| !!! | TTGCTTGTTATGATTATGAA+AGG | + | chr5_3:13547064-13547083 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTGAGAAACAG+AGG | - | chr5_3:13547540-13547559 | Msa0800140:CDS | 25.0% |
| ! | ATAATCAAGATATTAACGTG+TGG | - | chr5_3:13547642-13547661 | Msa0800140:intron | 25.0% |
| ! | TTATGTACAAAAATGTTTCG+TGG | - | chr5_3:13547680-13547699 | Msa0800140:intron | 25.0% |
| ! | CATAATCAACTGCAAAAATA+TGG | - | chr5_3:13547734-13547753 | Msa0800140:CDS | 25.0% |
| !!! | ATGTAGTTTGTTTTTGTCAA+AGG | - | chr5_3:13547816-13547835 | Msa0800140:intron | 25.0% |
| ! | TAGATTGTTACTAAATCATG+AGG | + | chr5_3:13548136-13548155 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTTGAATT+AGG | - | chr5_3:13548185-13548204 | Msa0800140:intron | 25.0% |
| ! | CATGATTTAATTACCTTGTT+TGG | + | chr5_3:13548250-13548269 | None:intergenic | 25.0% |
| !!! | AATTAATTTGTACCAAAGTG+TGG | + | chr5_3:13548424-13548443 | None:intergenic | 25.0% |
| ! | AGTGTTTGAATTATTATGGT+TGG | + | chr5_3:13548448-13548467 | None:intergenic | 25.0% |
| !!! | AGGAAGTGTTTGAATTATTA+TGG | + | chr5_3:13548452-13548471 | None:intergenic | 25.0% |
| ! | CTCATTCATTTCAATTGATA+AGG | - | chr5_3:13548511-13548530 | Msa0800140:intron | 25.0% |
| TGTTATGATTATGAAAGGGT+TGG | + | chr5_3:13547059-13547078 | None:intergenic | 30.0% | |
| ! | TTTGGTTAATTTCTGAGAGA+GGG | + | chr5_3:13547089-13547108 | None:intergenic | 30.0% |
| AGAGTATGTTAAAGAAATCG+AGG | - | chr5_3:13547143-13547162 | Msa0800140:three_prime_UTR | 30.0% | |
| TGATTCCTTATAGAACCATT+TGG | + | chr5_3:13547368-13547387 | None:intergenic | 30.0% | |
| AAAACAGCTGTTGAATTATG+TGG | - | chr5_3:13547422-13547441 | Msa0800140:intron | 30.0% | |
| TTATATGTATTTCAGCTAGC+TGG | - | chr5_3:13547992-13548011 | Msa0800140:intron | 30.0% | |
| TATATGTATTTCAGCTAGCT+GGG | - | chr5_3:13547993-13548012 | Msa0800140:intron | 30.0% | |
| CATTTCAATTGATAAGGGTA+AGG | - | chr5_3:13548517-13548536 | Msa0800140:intron | 30.0% | |
| AAGAGTTATCAAACTTGAGA+GGG | + | chr5_3:13548586-13548605 | None:intergenic | 30.0% | |
| TAAGAGTTATCAAACTTGAG+AGG | + | chr5_3:13548587-13548606 | None:intergenic | 30.0% | |
| AAACAGGGAACTAATGAAAT+TGG | - | chr5_3:13548691-13548710 | Msa0800140:intron | 30.0% | |
| CATAGAGTTCAACATATTTG+CGG | + | chr5_3:13548775-13548794 | None:intergenic | 30.0% | |
| ATATGTTGAACTCTATGCTA+AGG | - | chr5_3:13548778-13548797 | Msa0800140:intron | 30.0% | |
| TGTTATGATTATGAAAGGGT+TGG | + | chr5_3:13547059-13547078 | None:intergenic | 30.0% | |
| ! | TTTGGTTAATTTCTGAGAGA+GGG | + | chr5_3:13547089-13547108 | None:intergenic | 30.0% |
| AGAGTATGTTAAAGAAATCG+AGG | - | chr5_3:13547143-13547162 | Msa0800140:three_prime_UTR | 30.0% | |
| TGATTCCTTATAGAACCATT+TGG | + | chr5_3:13547368-13547387 | None:intergenic | 30.0% | |
| AAAACAGCTGTTGAATTATG+TGG | - | chr5_3:13547422-13547441 | Msa0800140:intron | 30.0% | |
| TTATATGTATTTCAGCTAGC+TGG | - | chr5_3:13547992-13548011 | Msa0800140:intron | 30.0% | |
| TATATGTATTTCAGCTAGCT+GGG | - | chr5_3:13547993-13548012 | Msa0800140:intron | 30.0% | |
| CATTTCAATTGATAAGGGTA+AGG | - | chr5_3:13548517-13548536 | Msa0800140:intron | 30.0% | |
| AAGAGTTATCAAACTTGAGA+GGG | + | chr5_3:13548586-13548605 | None:intergenic | 30.0% | |
| TAAGAGTTATCAAACTTGAG+AGG | + | chr5_3:13548587-13548606 | None:intergenic | 30.0% | |
| AAACAGGGAACTAATGAAAT+TGG | - | chr5_3:13548691-13548710 | Msa0800140:intron | 30.0% | |
| CATAGAGTTCAACATATTTG+CGG | + | chr5_3:13548775-13548794 | None:intergenic | 30.0% | |
| ATATGTTGAACTCTATGCTA+AGG | - | chr5_3:13548778-13548797 | Msa0800140:intron | 30.0% | |
| ! | CTTTGGTTAATTTCTGAGAG+AGG | + | chr5_3:13547090-13547109 | None:intergenic | 35.0% |
| CATATTTAGCCATACTTGCA+AGG | + | chr5_3:13547113-13547132 | None:intergenic | 35.0% | |
| GTATGTTAAAGAAATCGAGG+AGG | - | chr5_3:13547146-13547165 | Msa0800140:three_prime_UTR | 35.0% | |
| ATATGTATTTCAGCTAGCTG+GGG | - | chr5_3:13547994-13548013 | Msa0800140:intron | 35.0% | |
| ATGTACTAGTACCTTTCTTC+CGG | + | chr5_3:13548065-13548084 | None:intergenic | 35.0% | |
| ! | TAATTACCTTGTTTGGCATC+TGG | + | chr5_3:13548243-13548262 | None:intergenic | 35.0% |
| ! | AAGAGAGATCTTTTATCGCA+TGG | - | chr5_3:13548361-13548380 | Msa0800140:intron | 35.0% |
| ! | AGAGAGATCTTTTATCGCAT+GGG | - | chr5_3:13548362-13548381 | Msa0800140:intron | 35.0% |
| AAAGATCGCTCTAACTTTGA+AGG | - | chr5_3:13548545-13548564 | Msa0800140:intron | 35.0% | |
| CACAAGAAACTCTCTGAATT+AGG | - | chr5_3:13548966-13548985 | Msa0800140:CDS | 35.0% | |
| TTATCGTTCTCAATTGGCTA+AGG | - | chr5_3:13549007-13549026 | Msa0800140:intron | 35.0% | |
| ! | CTTTGGTTAATTTCTGAGAG+AGG | + | chr5_3:13547090-13547109 | None:intergenic | 35.0% |
| CATATTTAGCCATACTTGCA+AGG | + | chr5_3:13547113-13547132 | None:intergenic | 35.0% | |
| GTATGTTAAAGAAATCGAGG+AGG | - | chr5_3:13547146-13547165 | Msa0800140:three_prime_UTR | 35.0% | |
| ATATGTATTTCAGCTAGCTG+GGG | - | chr5_3:13547994-13548013 | Msa0800140:intron | 35.0% | |
| ATGTACTAGTACCTTTCTTC+CGG | + | chr5_3:13548065-13548084 | None:intergenic | 35.0% | |
| ! | TAATTACCTTGTTTGGCATC+TGG | + | chr5_3:13548243-13548262 | None:intergenic | 35.0% |
| ! | AAGAGAGATCTTTTATCGCA+TGG | - | chr5_3:13548361-13548380 | Msa0800140:intron | 35.0% |
| ! | AGAGAGATCTTTTATCGCAT+GGG | - | chr5_3:13548362-13548381 | Msa0800140:intron | 35.0% |
| AAAGATCGCTCTAACTTTGA+AGG | - | chr5_3:13548545-13548564 | Msa0800140:intron | 35.0% | |
| CACAAGAAACTCTCTGAATT+AGG | - | chr5_3:13548966-13548985 | Msa0800140:CDS | 35.0% | |
| TTATCGTTCTCAATTGGCTA+AGG | - | chr5_3:13549007-13549026 | Msa0800140:intron | 35.0% | |
| TAACCAAAGCCTTGCAAGTA+TGG | - | chr5_3:13547101-13547120 | Msa0800140:three_prime_UTR | 40.0% | |
| ATTTATAGGTGGCATGATGC+TGG | - | chr5_3:13547311-13547330 | Msa0800140:CDS | 40.0% | |
| TACGACGCAAAAACAAGAAC+AGG | - | chr5_3:13547338-13547357 | Msa0800140:CDS | 40.0% | |
| ACGACGCAAAAACAAGAACA+GGG | - | chr5_3:13547339-13547358 | Msa0800140:CDS | 40.0% | |
| GAATTATGTGGTCAGTGAGA+CGG | - | chr5_3:13547434-13547453 | Msa0800140:intron | 40.0% | |
| TTGAGAAACAGAGGAAGTGA+AGG | - | chr5_3:13547549-13547568 | Msa0800140:CDS | 40.0% | |
| ACACCCCAAAGTTTCATATG+CGG | - | chr5_3:13547576-13547595 | Msa0800140:CDS | 40.0% | |
| AGGTCCGCATATGAAACTTT+GGG | + | chr5_3:13547583-13547602 | None:intergenic | 40.0% | |
| AAGGTCCGCATATGAAACTT+TGG | + | chr5_3:13547584-13547603 | None:intergenic | 40.0% | |
| GATATTAACGTGTGGAGTCA+TGG | - | chr5_3:13547650-13547669 | Msa0800140:intron | 40.0% | |
| CCAACTATTCACTTTGTTCC+CGG | - | chr5_3:13548043-13548062 | Msa0800140:intron | 40.0% | |
| TGTACTAGTACCTTTCTTCC+GGG | + | chr5_3:13548064-13548083 | None:intergenic | 40.0% | |
| TCATTGGAATCTCCACAAGA+AGG | - | chr5_3:13548210-13548229 | Msa0800140:intron | 40.0% | |
| AAAGACATTGTAGCTCTCTC+CGG | - | chr5_3:13548395-13548414 | Msa0800140:intron | 40.0% | |
| ! | GCTCTAACTTTGAAGGTCAA+TGG | - | chr5_3:13548552-13548571 | Msa0800140:intron | 40.0% |
| ATTGAAGCTTCCTACAGACA+AGG | - | chr5_3:13548727-13548746 | Msa0800140:CDS | 40.0% | |
| TCAACATATTTGCGGAATGC+AGG | + | chr5_3:13548767-13548786 | None:intergenic | 40.0% | |
| TCTGAATTAGGCTTCAATCC+CGG | - | chr5_3:13548978-13548997 | Msa0800140:CDS | 40.0% | |
| TGGCAGTTATCGTTCTCAAT+TGG | - | chr5_3:13549001-13549020 | Msa0800140:intron | 40.0% | |
| TAACCAAAGCCTTGCAAGTA+TGG | - | chr5_3:13547101-13547120 | Msa0800140:three_prime_UTR | 40.0% | |
| ATTTATAGGTGGCATGATGC+TGG | - | chr5_3:13547311-13547330 | Msa0800140:CDS | 40.0% | |
| TACGACGCAAAAACAAGAAC+AGG | - | chr5_3:13547338-13547357 | Msa0800140:CDS | 40.0% | |
| ACGACGCAAAAACAAGAACA+GGG | - | chr5_3:13547339-13547358 | Msa0800140:CDS | 40.0% | |
| GAATTATGTGGTCAGTGAGA+CGG | - | chr5_3:13547434-13547453 | Msa0800140:intron | 40.0% | |
| TTGAGAAACAGAGGAAGTGA+AGG | - | chr5_3:13547549-13547568 | Msa0800140:CDS | 40.0% | |
| ACACCCCAAAGTTTCATATG+CGG | - | chr5_3:13547576-13547595 | Msa0800140:CDS | 40.0% | |
| AGGTCCGCATATGAAACTTT+GGG | + | chr5_3:13547583-13547602 | None:intergenic | 40.0% | |
| AAGGTCCGCATATGAAACTT+TGG | + | chr5_3:13547584-13547603 | None:intergenic | 40.0% | |
| GATATTAACGTGTGGAGTCA+TGG | - | chr5_3:13547650-13547669 | Msa0800140:intron | 40.0% | |
| CCAACTATTCACTTTGTTCC+CGG | - | chr5_3:13548043-13548062 | Msa0800140:intron | 40.0% | |
| TGTACTAGTACCTTTCTTCC+GGG | + | chr5_3:13548064-13548083 | None:intergenic | 40.0% | |
| TCATTGGAATCTCCACAAGA+AGG | - | chr5_3:13548210-13548229 | Msa0800140:intron | 40.0% | |
| AAAGACATTGTAGCTCTCTC+CGG | - | chr5_3:13548395-13548414 | Msa0800140:intron | 40.0% | |
| ! | GCTCTAACTTTGAAGGTCAA+TGG | - | chr5_3:13548552-13548571 | Msa0800140:intron | 40.0% |
| ATTGAAGCTTCCTACAGACA+AGG | - | chr5_3:13548727-13548746 | Msa0800140:CDS | 40.0% | |
| TCAACATATTTGCGGAATGC+AGG | + | chr5_3:13548767-13548786 | None:intergenic | 40.0% | |
| TCTGAATTAGGCTTCAATCC+CGG | - | chr5_3:13548978-13548997 | Msa0800140:CDS | 40.0% | |
| TGGCAGTTATCGTTCTCAAT+TGG | - | chr5_3:13549001-13549020 | Msa0800140:intron | 40.0% | |
| TAGCCATACTTGCAAGGCTT+TGG | + | chr5_3:13547107-13547126 | None:intergenic | 45.0% | |
| TACGCTAATCGTAGCATGAG+AGG | + | chr5_3:13547216-13547235 | None:intergenic | 45.0% | |
| CGACGCAAAAACAAGAACAG+GGG | - | chr5_3:13547340-13547359 | Msa0800140:CDS | 45.0% | |
| GACGCAAAAACAAGAACAGG+GGG | - | chr5_3:13547341-13547360 | Msa0800140:CDS | 45.0% | |
| ! | GGGGTCCAAATGGTTCTATA+AGG | - | chr5_3:13547360-13547379 | Msa0800140:CDS | 45.0% |
| CTGAACCATGCTGCTAACAA+GGG | - | chr5_3:13547395-13547414 | Msa0800140:intron | 45.0% | |
| GGTCCGCATATGAAACTTTG+GGG | + | chr5_3:13547582-13547601 | None:intergenic | 45.0% | |
| TTCATATGCGGACCTTTACC+AGG | - | chr5_3:13547588-13547607 | Msa0800140:CDS | 45.0% | |
| CCGGGAACAAAGTGAATAGT+TGG | + | chr5_3:13548046-13548065 | None:intergenic | 45.0% | |
| TCACTTTGTTCCCGGAAGAA+AGG | - | chr5_3:13548051-13548070 | Msa0800140:intron | 45.0% | |
| ! | TACCTTGTTTGGCATCTGGA+AGG | + | chr5_3:13548239-13548258 | None:intergenic | 45.0% |
| ! | TCAACTAGAGCCTTGTCTGT+AGG | + | chr5_3:13548740-13548759 | None:intergenic | 45.0% |
| TTGAGAACGATAACTGCCAC+CGG | + | chr5_3:13549000-13549019 | None:intergenic | 45.0% | |
| TGAGCTCAAGTAAGTAACCC+AGG | + | chr5_3:13549070-13549089 | None:intergenic | 45.0% | |
| TAGCCATACTTGCAAGGCTT+TGG | + | chr5_3:13547107-13547126 | None:intergenic | 45.0% | |
| TACGCTAATCGTAGCATGAG+AGG | + | chr5_3:13547216-13547235 | None:intergenic | 45.0% | |
| CGACGCAAAAACAAGAACAG+GGG | - | chr5_3:13547340-13547359 | Msa0800140:CDS | 45.0% | |
| GACGCAAAAACAAGAACAGG+GGG | - | chr5_3:13547341-13547360 | Msa0800140:CDS | 45.0% | |
| ! | GGGGTCCAAATGGTTCTATA+AGG | - | chr5_3:13547360-13547379 | Msa0800140:CDS | 45.0% |
| CTGAACCATGCTGCTAACAA+GGG | - | chr5_3:13547395-13547414 | Msa0800140:intron | 45.0% | |
| GGTCCGCATATGAAACTTTG+GGG | + | chr5_3:13547582-13547601 | None:intergenic | 45.0% | |
| TTCATATGCGGACCTTTACC+AGG | - | chr5_3:13547588-13547607 | Msa0800140:CDS | 45.0% | |
| CCGGGAACAAAGTGAATAGT+TGG | + | chr5_3:13548046-13548065 | None:intergenic | 45.0% | |
| TCACTTTGTTCCCGGAAGAA+AGG | - | chr5_3:13548051-13548070 | Msa0800140:intron | 45.0% | |
| ! | TACCTTGTTTGGCATCTGGA+AGG | + | chr5_3:13548239-13548258 | None:intergenic | 45.0% |
| ! | TCAACTAGAGCCTTGTCTGT+AGG | + | chr5_3:13548740-13548759 | None:intergenic | 45.0% |
| TTGAGAACGATAACTGCCAC+CGG | + | chr5_3:13549000-13549019 | None:intergenic | 45.0% | |
| TGAGCTCAAGTAAGTAACCC+AGG | + | chr5_3:13549070-13549089 | None:intergenic | 45.0% | |
| !! | AAAATTAATTAAACAAATTA+AGG | + | chr5_3:13547466-13547485 | None:intergenic | 5.0% |
| !! | AAAATTAATTAAACAAATTA+AGG | + | chr5_3:13547466-13547485 | None:intergenic | 5.0% |
| ACAAGAACAGGGGGTCCAAA+TGG | - | chr5_3:13547350-13547369 | Msa0800140:CDS | 50.0% | |
| GCTGAACCATGCTGCTAACA+AGG | - | chr5_3:13547394-13547413 | Msa0800140:intron | 50.0% | |
| TCAAGCCCTTGTTAGCAGCA+TGG | + | chr5_3:13547403-13547422 | None:intergenic | 50.0% | |
| TTATGTGGTCAGTGAGACGG+TGG | - | chr5_3:13547437-13547456 | Msa0800140:intron | 50.0% | |
| TCCTCGCACGTGTGCTAAAA+AGG | - | chr5_3:13547936-13547955 | Msa0800140:CDS | 50.0% | |
| CCTCGCACGTGTGCTAAAAA+GGG | - | chr5_3:13547937-13547956 | Msa0800140:CDS | 50.0% | |
| ATTTCAGCTAGCTGGGGTTG+TGG | - | chr5_3:13548000-13548019 | Msa0800140:intron | 50.0% | |
| TTGTACCAAAGTGTGGCCTC+CGG | + | chr5_3:13548417-13548436 | None:intergenic | 50.0% | |
| GAATTAGGCTTCAATCCCGG+TGG | - | chr5_3:13548981-13549000 | Msa0800140:CDS | 50.0% | |
| TGAGAACGATAACTGCCACC+GGG | + | chr5_3:13548999-13549018 | None:intergenic | 50.0% | |
| CAATTGGCTAAGGCAGCGTT+AGG | - | chr5_3:13549017-13549036 | Msa0800140:intron | 50.0% | |
| TGCCTCAACTGTTGTGATCC+TGG | - | chr5_3:13549049-13549068 | Msa0800140:intron | 50.0% | |
| GCCTCAACTGTTGTGATCCT+GGG | - | chr5_3:13549050-13549069 | Msa0800140:intron | 50.0% | |
| ACCCAGGATCACAACAGTTG+AGG | + | chr5_3:13549054-13549073 | None:intergenic | 50.0% | |
| ACAAGAACAGGGGGTCCAAA+TGG | - | chr5_3:13547350-13547369 | Msa0800140:CDS | 50.0% | |
| GCTGAACCATGCTGCTAACA+AGG | - | chr5_3:13547394-13547413 | Msa0800140:intron | 50.0% | |
| TCAAGCCCTTGTTAGCAGCA+TGG | + | chr5_3:13547403-13547422 | None:intergenic | 50.0% | |
| TTATGTGGTCAGTGAGACGG+TGG | - | chr5_3:13547437-13547456 | Msa0800140:intron | 50.0% | |
| TCCTCGCACGTGTGCTAAAA+AGG | - | chr5_3:13547936-13547955 | Msa0800140:CDS | 50.0% | |
| CCTCGCACGTGTGCTAAAAA+GGG | - | chr5_3:13547937-13547956 | Msa0800140:CDS | 50.0% | |
| ATTTCAGCTAGCTGGGGTTG+TGG | - | chr5_3:13548000-13548019 | Msa0800140:intron | 50.0% | |
| TTGTACCAAAGTGTGGCCTC+CGG | + | chr5_3:13548417-13548436 | None:intergenic | 50.0% | |
| GAATTAGGCTTCAATCCCGG+TGG | - | chr5_3:13548981-13549000 | Msa0800140:CDS | 50.0% | |
| TGAGAACGATAACTGCCACC+GGG | + | chr5_3:13548999-13549018 | None:intergenic | 50.0% | |
| CAATTGGCTAAGGCAGCGTT+AGG | - | chr5_3:13549017-13549036 | Msa0800140:intron | 50.0% | |
| TGCCTCAACTGTTGTGATCC+TGG | - | chr5_3:13549049-13549068 | Msa0800140:intron | 50.0% | |
| GCCTCAACTGTTGTGATCCT+GGG | - | chr5_3:13549050-13549069 | Msa0800140:intron | 50.0% | |
| ACCCAGGATCACAACAGTTG+AGG | + | chr5_3:13549054-13549073 | None:intergenic | 50.0% | |
| !! | CCCTTTTTAGCACACGTGCG+AGG | + | chr5_3:13547940-13547959 | None:intergenic | 55.0% |
| GTTGTGGCTGTAGAGGTCAC+TGG | - | chr5_3:13548016-13548035 | Msa0800140:intron | 55.0% | |
| TCTGGAAGGCGACCTTCTTG+TGG | + | chr5_3:13548225-13548244 | None:intergenic | 55.0% | |
| CGCCTTCCAGATGCCAAACA+AGG | - | chr5_3:13548234-13548253 | Msa0800140:intron | 55.0% | |
| GACATTGTAGCTCTCTCCGG+AGG | - | chr5_3:13548398-13548417 | Msa0800140:intron | 55.0% | |
| GGCTAAGGCAGCGTTAGGAA+TGG | - | chr5_3:13549022-13549041 | Msa0800140:intron | 55.0% | |
| !! | CCCTTTTTAGCACACGTGCG+AGG | + | chr5_3:13547940-13547959 | None:intergenic | 55.0% |
| GTTGTGGCTGTAGAGGTCAC+TGG | - | chr5_3:13548016-13548035 | Msa0800140:intron | 55.0% | |
| TCTGGAAGGCGACCTTCTTG+TGG | + | chr5_3:13548225-13548244 | None:intergenic | 55.0% | |
| CGCCTTCCAGATGCCAAACA+AGG | - | chr5_3:13548234-13548253 | Msa0800140:intron | 55.0% | |
| GACATTGTAGCTCTCTCCGG+AGG | - | chr5_3:13548398-13548417 | Msa0800140:intron | 55.0% | |
| GGCTAAGGCAGCGTTAGGAA+TGG | - | chr5_3:13549022-13549041 | Msa0800140:intron | 55.0% | |
| AGCTGGGGTTGTGGCTGTAG+AGG | - | chr5_3:13548009-13548028 | Msa0800140:intron | 60.0% | |
| GTGGCTGTAGAGGTCACTGG+TGG | - | chr5_3:13548019-13548038 | Msa0800140:intron | 60.0% | |
| TCTCTCCGGAGGCCACACTT+TGG | - | chr5_3:13548409-13548428 | Msa0800140:intron | 60.0% | |
| AGCTGGGGTTGTGGCTGTAG+AGG | - | chr5_3:13548009-13548028 | Msa0800140:intron | 60.0% | |
| GTGGCTGTAGAGGTCACTGG+TGG | - | chr5_3:13548019-13548038 | Msa0800140:intron | 60.0% | |
| TCTCTCCGGAGGCCACACTT+TGG | - | chr5_3:13548409-13548428 | Msa0800140:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 13547024 | 13549297 | 13547024 | ID=Msa0800140;Name=Msa0800140 |
| chr5_3 | mRNA | 13547024 | 13549297 | 13547024 | ID=Msa0800140-mRNA-1;Parent=Msa0800140;Name=Msa0800140-mRNA-1;_AED=0.13;_eAED=0.13;_QI=96|1|1|1|1|1|9|191|281 |
| chr5_3 | exon | 13547024 | 13547391 | 13547024 | ID=Msa0800140-mRNA-1:exon:5612;Parent=Msa0800140-mRNA-1 |
| chr5_3 | exon | 13547522 | 13547624 | 13547522 | ID=Msa0800140-mRNA-1:exon:5611;Parent=Msa0800140-mRNA-1 |
| chr5_3 | exon | 13547709 | 13547788 | 13547709 | ID=Msa0800140-mRNA-1:exon:5610;Parent=Msa0800140-mRNA-1 |
| chr5_3 | exon | 13547891 | 13547973 | 13547891 | ID=Msa0800140-mRNA-1:exon:5609;Parent=Msa0800140-mRNA-1 |
| chr5_3 | exon | 13548066 | 13548114 | 13548066 | ID=Msa0800140-mRNA-1:exon:5608;Parent=Msa0800140-mRNA-1 |
| chr5_3 | exon | 13548249 | 13548314 | 13548249 | ID=Msa0800140-mRNA-1:exon:5607;Parent=Msa0800140-mRNA-1 |
| chr5_3 | exon | 13548712 | 13548761 | 13548712 | ID=Msa0800140-mRNA-1:exon:5606;Parent=Msa0800140-mRNA-1 |
| chr5_3 | exon | 13548878 | 13549002 | 13548878 | ID=Msa0800140-mRNA-1:exon:5605;Parent=Msa0800140-mRNA-1 |
| chr5_3 | exon | 13549089 | 13549297 | 13549089 | ID=Msa0800140-mRNA-1:exon:5604;Parent=Msa0800140-mRNA-1 |
| chr5_3 | five_prime_UTR | 13549202 | 13549297 | 13549202 | ID=Msa0800140-mRNA-1:five_prime_utr;Parent=Msa0800140-mRNA-1 |
| chr5_3 | CDS | 13549089 | 13549201 | 13549089 | ID=Msa0800140-mRNA-1:cds;Parent=Msa0800140-mRNA-1 |
| chr5_3 | CDS | 13548878 | 13549002 | 13548878 | ID=Msa0800140-mRNA-1:cds;Parent=Msa0800140-mRNA-1 |
| chr5_3 | CDS | 13548712 | 13548761 | 13548712 | ID=Msa0800140-mRNA-1:cds;Parent=Msa0800140-mRNA-1 |
| chr5_3 | CDS | 13548249 | 13548314 | 13548249 | ID=Msa0800140-mRNA-1:cds;Parent=Msa0800140-mRNA-1 |
| chr5_3 | CDS | 13548066 | 13548114 | 13548066 | ID=Msa0800140-mRNA-1:cds;Parent=Msa0800140-mRNA-1 |
| chr5_3 | CDS | 13547891 | 13547973 | 13547891 | ID=Msa0800140-mRNA-1:cds;Parent=Msa0800140-mRNA-1 |
| chr5_3 | CDS | 13547709 | 13547788 | 13547709 | ID=Msa0800140-mRNA-1:cds;Parent=Msa0800140-mRNA-1 |
| chr5_3 | CDS | 13547522 | 13547624 | 13547522 | ID=Msa0800140-mRNA-1:cds;Parent=Msa0800140-mRNA-1 |
| chr5_3 | CDS | 13547215 | 13547391 | 13547215 | ID=Msa0800140-mRNA-1:cds;Parent=Msa0800140-mRNA-1 |
| chr5_3 | three_prime_UTR | 13547024 | 13547214 | 13547024 | ID=Msa0800140-mRNA-1:three_prime_utr;Parent=Msa0800140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
