AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1389880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1389880 MtrunA17_Chr5g0441411 97.500 120 2 1 1 119 1 120 4.04e-81 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1389880 AT5G12240.2 46.667 120 56 4 1 118 1 114 3.55e-25 92.0

Find 46 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAACTAACAGATTCATTT+TGG 0.150883 tig0021301:-84020 Msa1389880:intron
TTTAGATGTTGCTCGAAAAT+TGG 0.248254 tig0021301:-82687 Msa1389880:CDS
GCTTGTAACTCTGCAATCTT+AGG 0.301055 tig0021301:+82655 Msa1389880:intergenic
AAAGTCAGAGGCTGCTAAAA+AGG 0.332380 tig0021301:-83989 Msa1389880:intron
TTCATCCATGGCTATGGTTA+TGG 0.367364 tig0021301:+86304 Msa1389880:intergenic
AGATCCAGGTGTTAATTGTC+TGG 0.439476 tig0021301:+84344 Msa1389880:intergenic
TCCAATACAATCCCTAGTCT+TGG 0.443977 tig0021301:+82529 Msa1389880:intergenic
GATTTGTCTCAATAATTACA+TGG 0.452406 tig0021301:+82395 Msa1389880:intergenic
TTAACACCTGGATCTGGATC+TGG 0.464092 tig0021301:-84336 Msa1389880:CDS
AACGAACAGAAGGGAAGAGT+TGG 0.472674 tig0021301:+86261 Msa1389880:intergenic
AGACAATTAACACCTGGATC+TGG 0.479178 tig0021301:-84342 Msa1389880:CDS
CATGGCTATGGTTATGGCTA+TGG 0.488300 tig0021301:+86310 Msa1389880:intergenic
TCCAAGACTAGGGATTGTAT+TGG 0.504722 tig0021301:-82530 Msa1389880:three_prime_UTR
GCAGATCCAGATCCAGATCC+AGG 0.505288 tig0021301:+84330 Msa1389880:intergenic
TTCAGCTTCATCCATGGCTA+TGG 0.505306 tig0021301:+86298 Msa1389880:intergenic
TGCATGGAATGAAAAGGATA+AGG 0.508203 tig0021301:-84203 Msa1389880:CDS
TTTGCGAACGTGAATCTTGA+CGG 0.510535 tig0021301:+86347 Msa1389880:intergenic
TATCACTGCAGCTAAATGAA+TGG 0.519982 tig0021301:-84231 Msa1389880:intron
TTGAGTAGTAAAGTTGGTGT+GGG 0.522255 tig0021301:-82555 Msa1389880:three_prime_UTR
TATAATGTATAATGCAAATG+TGG 0.522293 tig0021301:-82502 Msa1389880:three_prime_UTR
TTGAAATTCAGCTTCATCCA+TGG 0.527393 tig0021301:+86292 Msa1389880:intergenic
ATCTGGATCTGCACAGGAAG+AGG 0.529978 tig0021301:-84319 Msa1389880:intron
TTGCGAACGTGAATCTTGAC+GGG 0.530131 tig0021301:+86348 Msa1389880:intergenic
ATCTGGATCTGGATCTGCAC+AGG 0.538020 tig0021301:-84325 Msa1389880:CDS
TGGTGTGGTTTATTCTGCAA+AGG 0.540097 tig0021301:-86399 Msa1389880:five_prime_UTR
TTTGAGTAGTAAAGTTGGTG+TGG 0.541565 tig0021301:-82556 Msa1389880:three_prime_UTR
GTGGTTTATTCTGCAAAGGT+TGG 0.553043 tig0021301:-86395 Msa1389880:five_prime_UTR
GCATGATGCATGGAATGAAA+AGG 0.553411 tig0021301:-84209 Msa1389880:CDS
TGGTGTGGGAATCCAAGACT+AGG 0.561188 tig0021301:-82541 Msa1389880:three_prime_UTR
GTCAAGATTCACGTTCGCAA+AGG 0.565582 tig0021301:-86345 Msa1389880:five_prime_UTR
TAATCGCGAGAACGAACAGA+AGG 0.580979 tig0021301:+86251 Msa1389880:intergenic
CAGAAGGGAAGAGTTGGAGA+AGG 0.581359 tig0021301:+86267 Msa1389880:intergenic
GTGTATTTGCAGCGGTGGTG+TGG 0.582985 tig0021301:-86414 Msa1389880:five_prime_UTR
CATAGCCATAACCATAGCCA+TGG 0.601899 tig0021301:-86309 Msa1389880:exon
ATTTGTCTCAATAATTACAT+GGG 0.617097 tig0021301:+82396 Msa1389880:intergenic
TTGGAACAAGCTAAAGTCAG+AGG 0.617833 tig0021301:-84001 Msa1389880:CDS
ACAGGTTGGTACAGAAGAAG+CGG 0.620709 tig0021301:-83118 Msa1389880:intron
GGTGTGGGAATCCAAGACTA+GGG 0.626844 tig0021301:-82540 Msa1389880:three_prime_UTR
TAAATGAATGGCATGATGCA+TGG 0.637004 tig0021301:-84219 Msa1389880:CDS
AATCGCGAGAACGAACAGAA+GGG 0.637609 tig0021301:+86252 Msa1389880:intergenic
ATAATGTATAATGCAAATGT+GGG 0.638049 tig0021301:-82501 Msa1389880:three_prime_UTR
TCATCCAGACAATTAACACC+TGG 0.646730 tig0021301:-84348 Msa1389880:CDS
GACATTGCAACTAACTGTTG+AGG 0.652421 tig0021301:+82439 Msa1389880:intergenic
TCTGTGTGTATTTGCAGCGG+TGG 0.665559 tig0021301:-86419 Msa1389880:five_prime_UTR
AATCAAGGAATCAACAAACA+TGG 0.667146 tig0021301:-84172 Msa1389880:intron
GTGTCTGTGTGTATTTGCAG+CGG 0.687144 tig0021301:-86422 Msa1389880:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATAATTAAGAACA+AGG + tig0021301:84915-84934 Msa1389880:intergenic 10.0%
!! TTGTTCTTAATTATTAAAAA+TGG - tig0021301:84914-84933 Msa1389880:intron 10.0%
!!! TTTTATTCATTTATATTTTC+TGG + tig0021301:86007-86026 Msa1389880:intergenic 10.0%
!! ATATAAATGAATAAAATTGA+TGG - tig0021301:86011-86030 Msa1389880:intron 10.0%
!!! TAAAACAATAAAAGAATTTT+TGG + tig0021301:86088-86107 Msa1389880:intergenic 10.0%
!!! TTTTATTGTTTTATTTCTTT+AGG - tig0021301:86095-86114 Msa1389880:intron 10.0%
!!! ATTTTTAATAATTAAGAACA+AGG + tig0021301:84915-84934 Msa1389880:intergenic 10.0%
!! TTGTTCTTAATTATTAAAAA+TGG - tig0021301:84914-84933 Msa1389880:intron 10.0%
!!! TTTTATTCATTTATATTTTC+TGG + tig0021301:86007-86026 Msa1389880:intergenic 10.0%
!! ATATAAATGAATAAAATTGA+TGG - tig0021301:86011-86030 Msa1389880:intron 10.0%
!!! TAAAACAATAAAAGAATTTT+TGG + tig0021301:86088-86107 Msa1389880:intergenic 10.0%
!!! TTTTATTGTTTTATTTCTTT+AGG - tig0021301:86095-86114 Msa1389880:intron 10.0%
!!! AAAAACAAAGTTTTAGAAAT+GGG + tig0021301:82775-82794 Msa1389880:intergenic 15.0%
!!! TAAAAACAAAGTTTTAGAAA+TGG + tig0021301:82776-82795 Msa1389880:intergenic 15.0%
!!! TTTTCTCATACTATTAATAT+TGG - tig0021301:83809-83828 Msa1389880:intron 15.0%
!!! TTAAAGCAAAATTCAAATTT+TGG - tig0021301:84353-84372 Msa1389880:CDS 15.0%
!!! GTTTAAATGATTATCATTTT+GGG - tig0021301:85771-85790 Msa1389880:intron 15.0%
!!! AAATGAACATTTTGTTTTTT+AGG - tig0021301:85878-85897 Msa1389880:intron 15.0%
!!! AATGAACATTTTGTTTTTTA+GGG - tig0021301:85879-85898 Msa1389880:intron 15.0%
!!! AAAAACAAAGTTTTAGAAAT+GGG + tig0021301:82775-82794 Msa1389880:intergenic 15.0%
!!! TAAAAACAAAGTTTTAGAAA+TGG + tig0021301:82776-82795 Msa1389880:intergenic 15.0%
!!! TTTTCTCATACTATTAATAT+TGG - tig0021301:83809-83828 Msa1389880:intron 15.0%
!!! TTAAAGCAAAATTCAAATTT+TGG - tig0021301:84353-84372 Msa1389880:CDS 15.0%
!!! GTTTAAATGATTATCATTTT+GGG - tig0021301:85771-85790 Msa1389880:intron 15.0%
!!! AAATGAACATTTTGTTTTTT+AGG - tig0021301:85878-85897 Msa1389880:intron 15.0%
!!! AATGAACATTTTGTTTTTTA+GGG - tig0021301:85879-85898 Msa1389880:intron 15.0%
!!! AGTTGAAGGAATTTATTTTA+TGG - tig0021301:83126-83145 Msa1389880:intron 20.0%
!! AGTACTTATAGTATAATAGA+TGG - tig0021301:83266-83285 Msa1389880:intron 20.0%
!!! TAATGATTTGGATAGAAATA+TGG - tig0021301:83420-83439 Msa1389880:intron 20.0%
!! CAATGATGATATAACTTTAT+GGG - tig0021301:83912-83931 Msa1389880:intron 20.0%
!! AATGATGATATAACTTTATG+GGG - tig0021301:83913-83932 Msa1389880:intron 20.0%
!! TTATAATTATTTGTTCGTTG+TGG - tig0021301:83951-83970 Msa1389880:intron 20.0%
!! TATAATTATTTGTTCGTTGT+GGG - tig0021301:83952-83971 Msa1389880:intron 20.0%
!!! AGATTCAAAAACTTTTACTT+TGG + tig0021301:83987-84006 Msa1389880:intergenic 20.0%
!! ACTTAACATGATTCTATATA+TGG - tig0021301:84391-84410 Msa1389880:intron 20.0%
!! CTTAACATGATTCTATATAT+GGG - tig0021301:84392-84411 Msa1389880:intron 20.0%
!! AAATTTAACAGTTGTCAATT+AGG + tig0021301:84432-84451 Msa1389880:intergenic 20.0%
!! ATAATTAAGAACAAGGATAA+TGG + tig0021301:84908-84927 Msa1389880:intergenic 20.0%
!! TGTAAAGAAAAAGTAAACAA+GGG + tig0021301:84976-84995 Msa1389880:intergenic 20.0%
!! ATGTAAAGAAAAAGTAAACA+AGG + tig0021301:84977-84996 Msa1389880:intergenic 20.0%
!! AAATCAAAGTAATTCAAACT+GGG + tig0021301:85155-85174 Msa1389880:intergenic 20.0%
!! AAAATCAAAGTAATTCAAAC+TGG + tig0021301:85156-85175 Msa1389880:intergenic 20.0%
!! TTGAAAGTTTCATTTAATGA+TGG - tig0021301:85357-85376 Msa1389880:intron 20.0%
!!! TTGATGATTTTGTAAAGATA+GGG - tig0021301:85389-85408 Msa1389880:intron 20.0%
!!! CGTTTAAATGATTATCATTT+TGG - tig0021301:85770-85789 Msa1389880:intron 20.0%
!!! TTCTTTCATAGAAAGTATTA+TGG - tig0021301:85796-85815 Msa1389880:intron 20.0%
!! ATTTATAGAAAGTAGTTTCT+TGG - tig0021301:85833-85852 Msa1389880:intron 20.0%
!!! ATGAACATTTTGTTTTTTAG+GGG - tig0021301:85880-85899 Msa1389880:intron 20.0%
!!! TTATATTTTCTGGAATTTCA+TGG + tig0021301:85997-86016 Msa1389880:intergenic 20.0%
!! TATAATGTATAATGCAAATG+TGG - tig0021301:86319-86338 Msa1389880:five_prime_UTR 20.0%
!! ATAATGTATAATGCAAATGT+GGG - tig0021301:86320-86339 Msa1389880:five_prime_UTR 20.0%
!! ATTTGTCTCAATAATTACAT+GGG + tig0021301:86428-86447 Msa1389880:intergenic 20.0%
!!! AGTTGAAGGAATTTATTTTA+TGG - tig0021301:83126-83145 Msa1389880:intron 20.0%
!! AGTACTTATAGTATAATAGA+TGG - tig0021301:83266-83285 Msa1389880:intron 20.0%
!!! TAATGATTTGGATAGAAATA+TGG - tig0021301:83420-83439 Msa1389880:intron 20.0%
!! CAATGATGATATAACTTTAT+GGG - tig0021301:83912-83931 Msa1389880:intron 20.0%
!! AATGATGATATAACTTTATG+GGG - tig0021301:83913-83932 Msa1389880:intron 20.0%
!! TTATAATTATTTGTTCGTTG+TGG - tig0021301:83951-83970 Msa1389880:intron 20.0%
!! TATAATTATTTGTTCGTTGT+GGG - tig0021301:83952-83971 Msa1389880:intron 20.0%
!!! AGATTCAAAAACTTTTACTT+TGG + tig0021301:83987-84006 Msa1389880:intergenic 20.0%
!! ACTTAACATGATTCTATATA+TGG - tig0021301:84391-84410 Msa1389880:intron 20.0%
!! CTTAACATGATTCTATATAT+GGG - tig0021301:84392-84411 Msa1389880:intron 20.0%
!! AAATTTAACAGTTGTCAATT+AGG + tig0021301:84432-84451 Msa1389880:intergenic 20.0%
!! ATAATTAAGAACAAGGATAA+TGG + tig0021301:84908-84927 Msa1389880:intergenic 20.0%
!! TGTAAAGAAAAAGTAAACAA+GGG + tig0021301:84976-84995 Msa1389880:intergenic 20.0%
!! ATGTAAAGAAAAAGTAAACA+AGG + tig0021301:84977-84996 Msa1389880:intergenic 20.0%
!! AAATCAAAGTAATTCAAACT+GGG + tig0021301:85155-85174 Msa1389880:intergenic 20.0%
!! AAAATCAAAGTAATTCAAAC+TGG + tig0021301:85156-85175 Msa1389880:intergenic 20.0%
!! TTGAAAGTTTCATTTAATGA+TGG - tig0021301:85357-85376 Msa1389880:intron 20.0%
!!! TTGATGATTTTGTAAAGATA+GGG - tig0021301:85389-85408 Msa1389880:intron 20.0%
!!! CGTTTAAATGATTATCATTT+TGG - tig0021301:85770-85789 Msa1389880:intron 20.0%
!!! TTCTTTCATAGAAAGTATTA+TGG - tig0021301:85796-85815 Msa1389880:intron 20.0%
!! ATTTATAGAAAGTAGTTTCT+TGG - tig0021301:85833-85852 Msa1389880:intron 20.0%
!!! ATGAACATTTTGTTTTTTAG+GGG - tig0021301:85880-85899 Msa1389880:intron 20.0%
!!! TTATATTTTCTGGAATTTCA+TGG + tig0021301:85997-86016 Msa1389880:intergenic 20.0%
!! TATAATGTATAATGCAAATG+TGG - tig0021301:86319-86338 Msa1389880:five_prime_UTR 20.0%
!! ATAATGTATAATGCAAATGT+GGG - tig0021301:86320-86339 Msa1389880:five_prime_UTR 20.0%
!! ATTTGTCTCAATAATTACAT+GGG + tig0021301:86428-86447 Msa1389880:intergenic 20.0%
! AATCGAAACTTTAAACAACA+GGG + tig0021301:82699-82718 Msa1389880:intergenic 25.0%
! AAATCGAAACTTTAAACAAC+AGG + tig0021301:82700-82719 Msa1389880:intergenic 25.0%
!!! AGACGAGTTTTATATGAATT+AGG - tig0021301:82830-82849 Msa1389880:intron 25.0%
!!! AGGTTTATTTGATGATGATA+AGG - tig0021301:82850-82869 Msa1389880:intron 25.0%
!! TTTTATGAGATAGTGCTTAT+TGG - tig0021301:82932-82951 Msa1389880:intron 25.0%
! TTTATGAGATAGTGCTTATT+GGG - tig0021301:82933-82952 Msa1389880:intron 25.0%
! AAAGAAAAGTTATGAACAGA+AGG + tig0021301:83003-83022 Msa1389880:intergenic 25.0%
! TAAATTCCTTCAACTTAAGT+GGG + tig0021301:83121-83140 Msa1389880:intergenic 25.0%
! ATAAATTCCTTCAACTTAAG+TGG + tig0021301:83122-83141 Msa1389880:intergenic 25.0%
! ACTTATAGTATAATAGATGG+TGG - tig0021301:83269-83288 Msa1389880:intron 25.0%
! AAACTAGACTTAAATGGTTT+CGG - tig0021301:83292-83311 Msa1389880:intron 25.0%
!! TAATCTCTTGTAGTTTTTCT+AGG + tig0021301:83402-83421 Msa1389880:intergenic 25.0%
! ACTACAAGAGATTAATGATT+TGG - tig0021301:83408-83427 Msa1389880:intron 25.0%
! TGGTACTTAATAGAACATTA+TGG - tig0021301:83440-83459 Msa1389880:intron 25.0%
!! TAGTGTTATTAGTTTCAACT+AGG - tig0021301:83525-83544 Msa1389880:intron 25.0%
!! TGAAGTAGTATTATTGATTG+CGG - tig0021301:83587-83606 Msa1389880:intron 25.0%
! GCAATGATGATATAACTTTA+TGG - tig0021301:83911-83930 Msa1389880:intron 25.0%
! ATAATTATTTGTTCGTTGTG+GGG - tig0021301:83953-83972 Msa1389880:intron 25.0%
! GTTAAAAAACAGAAAGAAAG+AGG + tig0021301:84095-84114 Msa1389880:intergenic 25.0%
! AAAACAAAGTGACAATTCTA+TGG + tig0021301:84183-84202 Msa1389880:intergenic 25.0%
! TAGAAACTCAAAAGAAACAT+GGG + tig0021301:84244-84263 Msa1389880:intergenic 25.0%
! ATTGACAACTGTTAAATTTC+AGG - tig0021301:84433-84452 Msa1389880:intron 25.0%
!! GATGTATTTGTTGAACAATA+AGG + tig0021301:84687-84706 Msa1389880:intergenic 25.0%
!! ATTTTGTTACAACAATCAAC+TGG - tig0021301:84738-84757 Msa1389880:intron 25.0%
!! AAAATGAATCTGTTAGTTTG+GGG + tig0021301:84802-84821 Msa1389880:intergenic 25.0%
!! CAAAATGAATCTGTTAGTTT+GGG + tig0021301:84803-84822 Msa1389880:intergenic 25.0%
! AACATAGCACATGTTTATAT+TGG - tig0021301:84937-84956 Msa1389880:intron 25.0%
!!! GTTGATGATTTTGTAAAGAT+AGG - tig0021301:85388-85407 Msa1389880:intron 25.0%
!! TGATGATTTTGTAAAGATAG+GGG - tig0021301:85390-85409 Msa1389880:intron 25.0%
! ATTGGTTATAATGTTTCAAC+AGG - tig0021301:85685-85704 Msa1389880:intron 25.0%
!! AAAGAAGTCTTTCATTGATT+AGG - tig0021301:85911-85930 Msa1389880:intron 25.0%
! GATTTGTCTCAATAATTACA+TGG + tig0021301:86429-86448 Msa1389880:intergenic 25.0%
! AATCGAAACTTTAAACAACA+GGG + tig0021301:82699-82718 Msa1389880:intergenic 25.0%
! AAATCGAAACTTTAAACAAC+AGG + tig0021301:82700-82719 Msa1389880:intergenic 25.0%
!!! AGACGAGTTTTATATGAATT+AGG - tig0021301:82830-82849 Msa1389880:intron 25.0%
!!! AGGTTTATTTGATGATGATA+AGG - tig0021301:82850-82869 Msa1389880:intron 25.0%
!! TTTTATGAGATAGTGCTTAT+TGG - tig0021301:82932-82951 Msa1389880:intron 25.0%
! TTTATGAGATAGTGCTTATT+GGG - tig0021301:82933-82952 Msa1389880:intron 25.0%
! AAAGAAAAGTTATGAACAGA+AGG + tig0021301:83003-83022 Msa1389880:intergenic 25.0%
! TAAATTCCTTCAACTTAAGT+GGG + tig0021301:83121-83140 Msa1389880:intergenic 25.0%
! ATAAATTCCTTCAACTTAAG+TGG + tig0021301:83122-83141 Msa1389880:intergenic 25.0%
! ACTTATAGTATAATAGATGG+TGG - tig0021301:83269-83288 Msa1389880:intron 25.0%
! AAACTAGACTTAAATGGTTT+CGG - tig0021301:83292-83311 Msa1389880:intron 25.0%
!! TAATCTCTTGTAGTTTTTCT+AGG + tig0021301:83402-83421 Msa1389880:intergenic 25.0%
! ACTACAAGAGATTAATGATT+TGG - tig0021301:83408-83427 Msa1389880:intron 25.0%
! TGGTACTTAATAGAACATTA+TGG - tig0021301:83440-83459 Msa1389880:intron 25.0%
!! TAGTGTTATTAGTTTCAACT+AGG - tig0021301:83525-83544 Msa1389880:intron 25.0%
!! TGAAGTAGTATTATTGATTG+CGG - tig0021301:83587-83606 Msa1389880:intron 25.0%
! GCAATGATGATATAACTTTA+TGG - tig0021301:83911-83930 Msa1389880:intron 25.0%
! ATAATTATTTGTTCGTTGTG+GGG - tig0021301:83953-83972 Msa1389880:intron 25.0%
! GTTAAAAAACAGAAAGAAAG+AGG + tig0021301:84095-84114 Msa1389880:intergenic 25.0%
! AAAACAAAGTGACAATTCTA+TGG + tig0021301:84183-84202 Msa1389880:intergenic 25.0%
! TAGAAACTCAAAAGAAACAT+GGG + tig0021301:84244-84263 Msa1389880:intergenic 25.0%
! ATTGACAACTGTTAAATTTC+AGG - tig0021301:84433-84452 Msa1389880:intron 25.0%
!! GATGTATTTGTTGAACAATA+AGG + tig0021301:84687-84706 Msa1389880:intergenic 25.0%
!! ATTTTGTTACAACAATCAAC+TGG - tig0021301:84738-84757 Msa1389880:intron 25.0%
!! AAAATGAATCTGTTAGTTTG+GGG + tig0021301:84802-84821 Msa1389880:intergenic 25.0%
!! CAAAATGAATCTGTTAGTTT+GGG + tig0021301:84803-84822 Msa1389880:intergenic 25.0%
! AACATAGCACATGTTTATAT+TGG - tig0021301:84937-84956 Msa1389880:intron 25.0%
!!! GTTGATGATTTTGTAAAGAT+AGG - tig0021301:85388-85407 Msa1389880:intron 25.0%
!! TGATGATTTTGTAAAGATAG+GGG - tig0021301:85390-85409 Msa1389880:intron 25.0%
! ATTGGTTATAATGTTTCAAC+AGG - tig0021301:85685-85704 Msa1389880:intron 25.0%
!! AAAGAAGTCTTTCATTGATT+AGG - tig0021301:85911-85930 Msa1389880:intron 25.0%
! GATTTGTCTCAATAATTACA+TGG + tig0021301:86429-86448 Msa1389880:intergenic 25.0%
!!! CCATTCTGTTTTATTTTTGG+TGG + tig0021301:82376-82395 Msa0693420:intergenic 30.0%
CCACCAAAAATAAAACAGAA+TGG - tig0021301:82373-82392 Msa1389880:three_prime_UTR 30.0%
!!! ACGCCATTCTGTTTTATTTT+TGG + tig0021301:82379-82398 Msa1389880:intergenic 30.0%
! TCTAGGGTTTAGAAAGTTAT+AGG - tig0021301:82625-82644 Msa1389880:three_prime_UTR 30.0%
! ATACCATGTTGTGAATTTTG+TGG - tig0021301:82725-82744 Msa1389880:intron 30.0%
AAACCACAAAATTCACAACA+TGG + tig0021301:82731-82750 Msa1389880:intergenic 30.0%
!! ATTTGATGATGATAAGGATG+TGG - tig0021301:82856-82875 Msa1389880:intron 30.0%
ACGTAGAAATAAAAGGAGTA+GGG - tig0021301:83060-83079 Msa1389880:intron 30.0%
TTATGGTATAGCTATAAGAC+TGG - tig0021301:83143-83162 Msa1389880:intron 30.0%
AGACAGGATAAGATTAGAAA+TGG - tig0021301:83219-83238 Msa1389880:intron 30.0%
! GACATGTGAATTTTGTAGTA+AGG - tig0021301:83328-83347 Msa1389880:intron 30.0%
GGACTTATAGAATTACAACA+TGG + tig0021301:83621-83640 Msa1389880:intergenic 30.0%
CAGCATATAGAAATTTGTGA+AGG + tig0021301:83682-83701 Msa1389880:intergenic 30.0%
! TGTTTTCAAAAAATCCGCTA+TGG - tig0021301:83700-83719 Msa1389880:intron 30.0%
! ATTGGTTTAGTCATTAGTGT+CGG - tig0021301:83827-83846 Msa1389880:intron 30.0%
CATTGCTTCATAGTTTATAG+AGG - tig0021301:83877-83896 Msa1389880:intron 30.0%
ATATAACTTTATGGGGAACT+TGG - tig0021301:83920-83939 Msa1389880:intron 30.0%
TAATTATTTGTTCGTTGTGG+GGG - tig0021301:83954-83973 Msa1389880:intron 30.0%
TACTGAGTTTGGATTATGTT+GGG - tig0021301:84131-84150 Msa1389880:intron 30.0%
GACAAATTGTAGCATTCATT+AGG + tig0021301:84161-84180 Msa1389880:intergenic 30.0%
! TTTGCTTTGAGTTTCATTTG+AGG - tig0021301:84200-84219 Msa1389880:CDS 30.0%
AGTTTCATTTGAGGAAAAGA+TGG - tig0021301:84209-84228 Msa1389880:CDS 30.0%
GTTTCATTTGAGGAAAAGAT+GGG - tig0021301:84210-84229 Msa1389880:CDS 30.0%
GTAGAAACTCAAAAGAAACA+TGG + tig0021301:84245-84264 Msa1389880:intergenic 30.0%
!!! TAGTTTTAGACTATGTTGTG+AGG + tig0021301:84332-84351 Msa1389880:intergenic 30.0%
!! GATAAGGATTTTGAGAATCA+AGG - tig0021301:84634-84653 Msa1389880:intron 30.0%
AATCAAGGAATCAACAAACA+TGG - tig0021301:84649-84668 Msa1389880:intron 30.0%
CCAAAATGAATCTGTTAGTT+TGG + tig0021301:84804-84823 Msa1389880:intergenic 30.0%
! CCAAACTAACAGATTCATTT+TGG - tig0021301:84801-84820 Msa1389880:intron 30.0%
GTATGCATGTAAAAATAAGC+AGG + tig0021301:84871-84890 Msa1389880:intergenic 30.0%
GCTTTAACCTTAAAAGTTTG+AGG - tig0021301:85029-85048 Msa1389880:intron 30.0%
! TAATCAGCCTCAAACTTTTA+AGG + tig0021301:85039-85058 Msa1389880:intergenic 30.0%
AAAGTAATTCAAACTGGGTT+TGG + tig0021301:85150-85169 Msa1389880:intergenic 30.0%
ATAAAAATTCTTGTCCCATC+TGG - tig0021301:85244-85263 Msa1389880:intron 30.0%
!!! ATTTTTTTCACATGCCAGAT+GGG + tig0021301:85261-85280 Msa1389880:intergenic 30.0%
TCTCTTTATCATGTTTGTGA+AGG - tig0021301:85487-85506 Msa1389880:intron 30.0%
ATTTATGCGTGTGACAATTT+AGG + tig0021301:85523-85542 Msa1389880:intergenic 30.0%
AAATTGTCACACGCATAAAT+AGG - tig0021301:85523-85542 Msa1389880:intron 30.0%
AATTGTCACACGCATAAATA+GGG - tig0021301:85524-85543 Msa1389880:intron 30.0%
GTTATAATGTTTCAACAGGT+TGG - tig0021301:85689-85708 Msa1389880:intron 30.0%
TTTAGATGTTGCTCGAAAAT+TGG - tig0021301:86134-86153 Msa1389880:intron 30.0%
!! GACATTTTGAGTAGTAAAGT+TGG - tig0021301:86260-86279 Msa1389880:CDS 30.0%
!!! CCATTCTGTTTTATTTTTGG+TGG + tig0021301:82376-82395 Msa0328840:intergenic 30.0%
CCACCAAAAATAAAACAGAA+TGG - tig0021301:82373-82392 Msa1389880:three_prime_UTR 30.0%
!!! ACGCCATTCTGTTTTATTTT+TGG + tig0021301:82379-82398 Msa1389880:intergenic 30.0%
! TCTAGGGTTTAGAAAGTTAT+AGG - tig0021301:82625-82644 Msa1389880:three_prime_UTR 30.0%
! ATACCATGTTGTGAATTTTG+TGG - tig0021301:82725-82744 Msa1389880:intron 30.0%
AAACCACAAAATTCACAACA+TGG + tig0021301:82731-82750 Msa1389880:intergenic 30.0%
!! ATTTGATGATGATAAGGATG+TGG - tig0021301:82856-82875 Msa1389880:intron 30.0%
ACGTAGAAATAAAAGGAGTA+GGG - tig0021301:83060-83079 Msa1389880:intron 30.0%
TTATGGTATAGCTATAAGAC+TGG - tig0021301:83143-83162 Msa1389880:intron 30.0%
AGACAGGATAAGATTAGAAA+TGG - tig0021301:83219-83238 Msa1389880:intron 30.0%
! GACATGTGAATTTTGTAGTA+AGG - tig0021301:83328-83347 Msa1389880:intron 30.0%
GGACTTATAGAATTACAACA+TGG + tig0021301:83621-83640 Msa1389880:intergenic 30.0%
CAGCATATAGAAATTTGTGA+AGG + tig0021301:83682-83701 Msa1389880:intergenic 30.0%
! TGTTTTCAAAAAATCCGCTA+TGG - tig0021301:83700-83719 Msa1389880:intron 30.0%
! ATTGGTTTAGTCATTAGTGT+CGG - tig0021301:83827-83846 Msa1389880:intron 30.0%
CATTGCTTCATAGTTTATAG+AGG - tig0021301:83877-83896 Msa1389880:intron 30.0%
ATATAACTTTATGGGGAACT+TGG - tig0021301:83920-83939 Msa1389880:intron 30.0%
TAATTATTTGTTCGTTGTGG+GGG - tig0021301:83954-83973 Msa1389880:intron 30.0%
TACTGAGTTTGGATTATGTT+GGG - tig0021301:84131-84150 Msa1389880:intron 30.0%
GACAAATTGTAGCATTCATT+AGG + tig0021301:84161-84180 Msa1389880:intergenic 30.0%
! TTTGCTTTGAGTTTCATTTG+AGG - tig0021301:84200-84219 Msa1389880:CDS 30.0%
AGTTTCATTTGAGGAAAAGA+TGG - tig0021301:84209-84228 Msa1389880:CDS 30.0%
GTTTCATTTGAGGAAAAGAT+GGG - tig0021301:84210-84229 Msa1389880:CDS 30.0%
GTAGAAACTCAAAAGAAACA+TGG + tig0021301:84245-84264 Msa1389880:intergenic 30.0%
!!! TAGTTTTAGACTATGTTGTG+AGG + tig0021301:84332-84351 Msa1389880:intergenic 30.0%
!! GATAAGGATTTTGAGAATCA+AGG - tig0021301:84634-84653 Msa1389880:intron 30.0%
AATCAAGGAATCAACAAACA+TGG - tig0021301:84649-84668 Msa1389880:intron 30.0%
CCAAAATGAATCTGTTAGTT+TGG + tig0021301:84804-84823 Msa1389880:intergenic 30.0%
! CCAAACTAACAGATTCATTT+TGG - tig0021301:84801-84820 Msa1389880:intron 30.0%
GTATGCATGTAAAAATAAGC+AGG + tig0021301:84871-84890 Msa1389880:intergenic 30.0%
GCTTTAACCTTAAAAGTTTG+AGG - tig0021301:85029-85048 Msa1389880:intron 30.0%
! TAATCAGCCTCAAACTTTTA+AGG + tig0021301:85039-85058 Msa1389880:intergenic 30.0%
AAAGTAATTCAAACTGGGTT+TGG + tig0021301:85150-85169 Msa1389880:intergenic 30.0%
ATAAAAATTCTTGTCCCATC+TGG - tig0021301:85244-85263 Msa1389880:intron 30.0%
!!! ATTTTTTTCACATGCCAGAT+GGG + tig0021301:85261-85280 Msa1389880:intergenic 30.0%
TCTCTTTATCATGTTTGTGA+AGG - tig0021301:85487-85506 Msa1389880:intron 30.0%
ATTTATGCGTGTGACAATTT+AGG + tig0021301:85523-85542 Msa1389880:intergenic 30.0%
AAATTGTCACACGCATAAAT+AGG - tig0021301:85523-85542 Msa1389880:intron 30.0%
AATTGTCACACGCATAAATA+GGG - tig0021301:85524-85543 Msa1389880:intron 30.0%
GTTATAATGTTTCAACAGGT+TGG - tig0021301:85689-85708 Msa1389880:intron 30.0%
TTTAGATGTTGCTCGAAAAT+TGG - tig0021301:86134-86153 Msa1389880:intron 30.0%
!! GACATTTTGAGTAGTAAAGT+TGG - tig0021301:86260-86279 Msa1389880:CDS 30.0%
TTGAAATTCAGCTTCATCCA+TGG + tig0021301:82532-82551 Msa1389880:intergenic 35.0%
!!! TGTGGTATCAGTTTTGAAGT+AGG - tig0021301:82874-82893 Msa1389880:intron 35.0%
!!! GTGGTATCAGTTTTGAAGTA+GGG - tig0021301:82875-82894 Msa1389880:intron 35.0%
!!! TGGTATCAGTTTTGAAGTAG+GGG - tig0021301:82876-82895 Msa1389880:intron 35.0%
!! TTATTTCTACGTCGTCTTGT+AGG + tig0021301:83052-83071 Msa1389880:intergenic 35.0%
CAAGACGACGTAGAAATAAA+AGG - tig0021301:83053-83072 Msa1389880:intron 35.0%
GACGTAGAAATAAAAGGAGT+AGG - tig0021301:83059-83078 Msa1389880:intron 35.0%
!! AAAGTACCCACTTAAGTTGA+AGG - tig0021301:83112-83131 Msa1389880:CDS 35.0%
CAACATTAGAAAGAGAGTCA+GGG - tig0021301:83242-83261 Msa1389880:intron 35.0%
TGGTGGAAACTAGACTTAAA+TGG - tig0021301:83286-83305 Msa1389880:intron 35.0%
! AGTAAGGAGAGTATATCAGA+TGG - tig0021301:83344-83363 Msa1389880:intron 35.0%
ATGGCGTTATTTGATTCATG+CGG - tig0021301:83459-83478 Msa1389880:intron 35.0%
! GTAGTATTATTGATTGCGGA+TGG - tig0021301:83591-83610 Msa1389880:intron 35.0%
! TTGTCAAGTATTGTCCATAG+CGG + tig0021301:83717-83736 Msa1389880:intergenic 35.0%
CAAATGTGTTAGTGTCATGT+CGG + tig0021301:83769-83788 Msa1389880:intergenic 35.0%
TATGACATGATGTTCTGTGT+GGG - tig0021301:84008-84027 Msa1389880:CDS 35.0%
! GAAAGAAAGAGGATTTTCCA+GGG + tig0021301:84084-84103 Msa1389880:intergenic 35.0%
! AGAAAGAAAGAGGATTTTCC+AGG + tig0021301:84085-84104 Msa1389880:intergenic 35.0%
ATCCAAACTCAGTACAAAGA+AGG + tig0021301:84125-84144 Msa1389880:intergenic 35.0%
GTACTGAGTTTGGATTATGT+TGG - tig0021301:84130-84149 Msa1389880:intron 35.0%
TATCACTGCAGCTAAATGAA+TGG - tig0021301:84590-84609 Msa1389880:intron 35.0%
TAAATGAATGGCATGATGCA+TGG - tig0021301:84602-84621 Msa1389880:intron 35.0%
TGCATGGAATGAAAAGGATA+AGG - tig0021301:84618-84637 Msa1389880:intron 35.0%
!!! CATTTTTTTCACATGCCAGA+TGG + tig0021301:85262-85281 Msa1389880:intergenic 35.0%
AGGGATAAAAGATAAGTGAG+AGG - tig0021301:85543-85562 Msa1389880:intron 35.0%
GGGATAAAAGATAAGTGAGA+GGG - tig0021301:85544-85563 Msa1389880:intron 35.0%
GGATAAAAGATAAGTGAGAG+GGG - tig0021301:85545-85564 Msa1389880:intron 35.0%
!! TTTGAGTAGTAAAGTTGGTG+TGG - tig0021301:86265-86284 Msa1389880:CDS 35.0%
!! TTGAGTAGTAAAGTTGGTGT+GGG - tig0021301:86266-86285 Msa1389880:CDS 35.0%
TTGAAATTCAGCTTCATCCA+TGG + tig0021301:82532-82551 Msa1389880:intergenic 35.0%
!!! TGTGGTATCAGTTTTGAAGT+AGG - tig0021301:82874-82893 Msa1389880:intron 35.0%
!!! GTGGTATCAGTTTTGAAGTA+GGG - tig0021301:82875-82894 Msa1389880:intron 35.0%
!!! TGGTATCAGTTTTGAAGTAG+GGG - tig0021301:82876-82895 Msa1389880:intron 35.0%
!! TTATTTCTACGTCGTCTTGT+AGG + tig0021301:83052-83071 Msa1389880:intergenic 35.0%
CAAGACGACGTAGAAATAAA+AGG - tig0021301:83053-83072 Msa1389880:intron 35.0%
GACGTAGAAATAAAAGGAGT+AGG - tig0021301:83059-83078 Msa1389880:intron 35.0%
!! AAAGTACCCACTTAAGTTGA+AGG - tig0021301:83112-83131 Msa1389880:CDS 35.0%
CAACATTAGAAAGAGAGTCA+GGG - tig0021301:83242-83261 Msa1389880:intron 35.0%
TGGTGGAAACTAGACTTAAA+TGG - tig0021301:83286-83305 Msa1389880:intron 35.0%
! AGTAAGGAGAGTATATCAGA+TGG - tig0021301:83344-83363 Msa1389880:intron 35.0%
ATGGCGTTATTTGATTCATG+CGG - tig0021301:83459-83478 Msa1389880:intron 35.0%
! GTAGTATTATTGATTGCGGA+TGG - tig0021301:83591-83610 Msa1389880:intron 35.0%
! TTGTCAAGTATTGTCCATAG+CGG + tig0021301:83717-83736 Msa1389880:intergenic 35.0%
CAAATGTGTTAGTGTCATGT+CGG + tig0021301:83769-83788 Msa1389880:intergenic 35.0%
TATGACATGATGTTCTGTGT+GGG - tig0021301:84008-84027 Msa1389880:CDS 35.0%
! GAAAGAAAGAGGATTTTCCA+GGG + tig0021301:84084-84103 Msa1389880:intergenic 35.0%
! AGAAAGAAAGAGGATTTTCC+AGG + tig0021301:84085-84104 Msa1389880:intergenic 35.0%
ATCCAAACTCAGTACAAAGA+AGG + tig0021301:84125-84144 Msa1389880:intergenic 35.0%
GTACTGAGTTTGGATTATGT+TGG - tig0021301:84130-84149 Msa1389880:intron 35.0%
TATCACTGCAGCTAAATGAA+TGG - tig0021301:84590-84609 Msa1389880:intron 35.0%
TAAATGAATGGCATGATGCA+TGG - tig0021301:84602-84621 Msa1389880:intron 35.0%
TGCATGGAATGAAAAGGATA+AGG - tig0021301:84618-84637 Msa1389880:intron 35.0%
!!! CATTTTTTTCACATGCCAGA+TGG + tig0021301:85262-85281 Msa1389880:intergenic 35.0%
AGGGATAAAAGATAAGTGAG+AGG - tig0021301:85543-85562 Msa1389880:intron 35.0%
GGGATAAAAGATAAGTGAGA+GGG - tig0021301:85544-85563 Msa1389880:intron 35.0%
GGATAAAAGATAAGTGAGAG+GGG - tig0021301:85545-85564 Msa1389880:intron 35.0%
!! TTTGAGTAGTAAAGTTGGTG+TGG - tig0021301:86265-86284 Msa1389880:CDS 35.0%
!! TTGAGTAGTAAAGTTGGTGT+GGG - tig0021301:86266-86285 Msa1389880:CDS 35.0%
TGGTGTGGTTTATTCTGCAA+AGG - tig0021301:82422-82441 Msa1389880:three_prime_UTR 40.0%
GTGGTTTATTCTGCAAAGGT+TGG - tig0021301:82426-82445 Msa1389880:three_prime_UTR 40.0%
TTTGCGAACGTGAATCTTGA+CGG + tig0021301:82477-82496 Msa1389880:intergenic 40.0%
TTCATCCATGGCTATGGTTA+TGG + tig0021301:82520-82539 Msa1389880:intergenic 40.0%
TTCCCACTGTTTGTGTTTCT+AGG - tig0021301:82608-82627 Msa1389880:three_prime_UTR 40.0%
! TCCCACTGTTTGTGTTTCTA+GGG - tig0021301:82609-82628 Msa1389880:three_prime_UTR 40.0%
ACCCTAGAAACACAAACAGT+GGG + tig0021301:82613-82632 Msa1389880:intergenic 40.0%
AACCCTAGAAACACAAACAG+TGG + tig0021301:82614-82633 Msa1389880:intergenic 40.0%
AGAAGGATTCGAAACTGCAT+GGG + tig0021301:82986-83005 Msa1389880:intergenic 40.0%
CGTATCAGATAAGACACATG+CGG + tig0021301:83092-83111 Msa1389880:intergenic 40.0%
GCAACATTAGAAAGAGAGTC+AGG - tig0021301:83241-83260 Msa1389880:intron 40.0%
! AAGGAGAGTATATCAGATGG+AGG - tig0021301:83347-83366 Msa1389880:intron 40.0%
! AGGAGAGTATATCAGATGGA+GGG - tig0021301:83348-83367 Msa1389880:intron 40.0%
AGTCCAATCACTAGATCTAG+AGG - tig0021301:83372-83391 Msa1389880:intron 40.0%
CTTCCTCTAGATCTAGTGAT+TGG + tig0021301:83378-83397 Msa1389880:intergenic 40.0%
! TTTTATGGCAGCTCAAATGG+CGG + tig0021301:83642-83661 Msa1389880:intergenic 40.0%
ACAACACTAGATTGAAGTGC+CGG - tig0021301:83733-83752 Msa1389880:intron 40.0%
TGTTAGTGTCATGTCGGTAT+TGG + tig0021301:83763-83782 Msa1389880:intergenic 40.0%
CGACATGACACTAACACATT+TGG - tig0021301:83767-83786 Msa1389880:intron 40.0%
GTATGACATGATGTTCTGTG+TGG - tig0021301:84007-84026 Msa1389880:CDS 40.0%
ATGACATGATGTTCTGTGTG+GGG - tig0021301:84009-84028 Msa1389880:CDS 40.0%
CTCCTTCTTTGTACTGAGTT+TGG - tig0021301:84120-84139 Msa1389880:intron 40.0%
TACCTTAAAAGCCTGCACAA+TGG - tig0021301:84262-84281 Msa1389880:intron 40.0%
CTATATATGGGATTACGCCT+TGG - tig0021301:84404-84423 Msa1389880:intron 40.0%
TCATCCAGACAATTAACACC+TGG - tig0021301:84473-84492 Msa1389880:intron 40.0%
AGATCCAGGTGTTAATTGTC+TGG + tig0021301:84480-84499 Msa1389880:intergenic 40.0%
AGACAATTAACACCTGGATC+TGG - tig0021301:84479-84498 Msa1389880:intron 40.0%
GCATGATGCATGGAATGAAA+AGG - tig0021301:84612-84631 Msa1389880:intron 40.0%
TTGGAACAAGCTAAAGTCAG+AGG - tig0021301:84820-84839 Msa1389880:intron 40.0%
AAAGTCAGAGGCTGCTAAAA+AGG - tig0021301:84832-84851 Msa1389880:intron 40.0%
TTCAAAGGAAAGGACTAAGG+AGG + tig0021301:85303-85322 Msa1389880:intergenic 40.0%
GGTTTCAAAGGAAAGGACTA+AGG + tig0021301:85306-85325 Msa1389880:intergenic 40.0%
! ATAGGGGAGATTGTTGTTGT+AGG - tig0021301:85406-85425 Msa1389880:intron 40.0%
! CTAGGGTGTTATAACTGTGA+TGG - tig0021301:85583-85602 Msa1389880:intron 40.0%
TAGAATGACACTACGCTCAT+TGG - tig0021301:85667-85686 Msa1389880:intron 40.0%
! AGAAGCGGAAAGATTTTGCA+AGG - tig0021301:85718-85737 Msa1389880:intron 40.0%
GCTTGTAACTCTGCAATCTT+AGG + tig0021301:86169-86188 Msa1389880:intergenic 40.0%
TCCAAGACTAGGGATTGTAT+TGG - tig0021301:86291-86310 Msa1389880:CDS 40.0%
TCCAATACAATCCCTAGTCT+TGG + tig0021301:86295-86314 Msa1389880:intergenic 40.0%
GACATTGCAACTAACTGTTG+AGG + tig0021301:86385-86404 Msa1389880:intergenic 40.0%
AATCATTACATGTTTCCCCC+AGG - tig0021301:86445-86464 Msa1389880:five_prime_UTR 40.0%
TGGTGTGGTTTATTCTGCAA+AGG - tig0021301:82422-82441 Msa1389880:three_prime_UTR 40.0%
GTGGTTTATTCTGCAAAGGT+TGG - tig0021301:82426-82445 Msa1389880:three_prime_UTR 40.0%
TTTGCGAACGTGAATCTTGA+CGG + tig0021301:82477-82496 Msa1389880:intergenic 40.0%
TTCATCCATGGCTATGGTTA+TGG + tig0021301:82520-82539 Msa1389880:intergenic 40.0%
TTCCCACTGTTTGTGTTTCT+AGG - tig0021301:82608-82627 Msa1389880:three_prime_UTR 40.0%
! TCCCACTGTTTGTGTTTCTA+GGG - tig0021301:82609-82628 Msa1389880:three_prime_UTR 40.0%
ACCCTAGAAACACAAACAGT+GGG + tig0021301:82613-82632 Msa1389880:intergenic 40.0%
AACCCTAGAAACACAAACAG+TGG + tig0021301:82614-82633 Msa1389880:intergenic 40.0%
AGAAGGATTCGAAACTGCAT+GGG + tig0021301:82986-83005 Msa1389880:intergenic 40.0%
CGTATCAGATAAGACACATG+CGG + tig0021301:83092-83111 Msa1389880:intergenic 40.0%
GCAACATTAGAAAGAGAGTC+AGG - tig0021301:83241-83260 Msa1389880:intron 40.0%
! AAGGAGAGTATATCAGATGG+AGG - tig0021301:83347-83366 Msa1389880:intron 40.0%
! AGGAGAGTATATCAGATGGA+GGG - tig0021301:83348-83367 Msa1389880:intron 40.0%
AGTCCAATCACTAGATCTAG+AGG - tig0021301:83372-83391 Msa1389880:intron 40.0%
CTTCCTCTAGATCTAGTGAT+TGG + tig0021301:83378-83397 Msa1389880:intergenic 40.0%
! TTTTATGGCAGCTCAAATGG+CGG + tig0021301:83642-83661 Msa1389880:intergenic 40.0%
ACAACACTAGATTGAAGTGC+CGG - tig0021301:83733-83752 Msa1389880:intron 40.0%
TGTTAGTGTCATGTCGGTAT+TGG + tig0021301:83763-83782 Msa1389880:intergenic 40.0%
CGACATGACACTAACACATT+TGG - tig0021301:83767-83786 Msa1389880:intron 40.0%
GTATGACATGATGTTCTGTG+TGG - tig0021301:84007-84026 Msa1389880:CDS 40.0%
ATGACATGATGTTCTGTGTG+GGG - tig0021301:84009-84028 Msa1389880:CDS 40.0%
CTCCTTCTTTGTACTGAGTT+TGG - tig0021301:84120-84139 Msa1389880:intron 40.0%
TACCTTAAAAGCCTGCACAA+TGG - tig0021301:84262-84281 Msa1389880:intron 40.0%
CTATATATGGGATTACGCCT+TGG - tig0021301:84404-84423 Msa1389880:intron 40.0%
TCATCCAGACAATTAACACC+TGG - tig0021301:84473-84492 Msa1389880:intron 40.0%
AGATCCAGGTGTTAATTGTC+TGG + tig0021301:84480-84499 Msa1389880:intergenic 40.0%
AGACAATTAACACCTGGATC+TGG - tig0021301:84479-84498 Msa1389880:intron 40.0%
GCATGATGCATGGAATGAAA+AGG - tig0021301:84612-84631 Msa1389880:intron 40.0%
TTGGAACAAGCTAAAGTCAG+AGG - tig0021301:84820-84839 Msa1389880:intron 40.0%
AAAGTCAGAGGCTGCTAAAA+AGG - tig0021301:84832-84851 Msa1389880:intron 40.0%
TTCAAAGGAAAGGACTAAGG+AGG + tig0021301:85303-85322 Msa1389880:intergenic 40.0%
GGTTTCAAAGGAAAGGACTA+AGG + tig0021301:85306-85325 Msa1389880:intergenic 40.0%
! ATAGGGGAGATTGTTGTTGT+AGG - tig0021301:85406-85425 Msa1389880:intron 40.0%
! CTAGGGTGTTATAACTGTGA+TGG - tig0021301:85583-85602 Msa1389880:intron 40.0%
TAGAATGACACTACGCTCAT+TGG - tig0021301:85667-85686 Msa1389880:intron 40.0%
! AGAAGCGGAAAGATTTTGCA+AGG - tig0021301:85718-85737 Msa1389880:intron 40.0%
GCTTGTAACTCTGCAATCTT+AGG + tig0021301:86169-86188 Msa1389880:intergenic 40.0%
TCCAAGACTAGGGATTGTAT+TGG - tig0021301:86291-86310 Msa1389880:CDS 40.0%
TCCAATACAATCCCTAGTCT+TGG + tig0021301:86295-86314 Msa1389880:intergenic 40.0%
GACATTGCAACTAACTGTTG+AGG + tig0021301:86385-86404 Msa1389880:intergenic 40.0%
AATCATTACATGTTTCCCCC+AGG - tig0021301:86445-86464 Msa1389880:five_prime_UTR 40.0%
GTGTCTGTGTGTATTTGCAG+CGG - tig0021301:82399-82418 Msa1389880:three_prime_UTR 45.0%
TTGCGAACGTGAATCTTGAC+GGG + tig0021301:82476-82495 Msa1389880:intergenic 45.0%
GTCAAGATTCACGTTCGCAA+AGG - tig0021301:82476-82495 Msa1389880:three_prime_UTR 45.0%
CATGGCTATGGTTATGGCTA+TGG + tig0021301:82514-82533 Msa1389880:intergenic 45.0%
CATAGCCATAACCATAGCCA+TGG - tig0021301:82512-82531 Msa1389880:three_prime_UTR 45.0%
TTCAGCTTCATCCATGGCTA+TGG + tig0021301:82526-82545 Msa1389880:intergenic 45.0%
AACGAACAGAAGGGAAGAGT+TGG + tig0021301:82563-82582 Msa1389880:intergenic 45.0%
AATCGCGAGAACGAACAGAA+GGG + tig0021301:82572-82591 Msa1389880:intergenic 45.0%
TAATCGCGAGAACGAACAGA+AGG + tig0021301:82573-82592 Msa1389880:intergenic 45.0%
GGCATGACTAGAAATCACGT+GGG - tig0021301:82954-82973 Msa1389880:intron 45.0%
CAGAAGGATTCGAAACTGCA+TGG + tig0021301:82987-83006 Msa1389880:intergenic 45.0%
TGTTGTACGAGACAGAGATG+AGG - tig0021301:83169-83188 Msa1389880:intron 45.0%
! AGGATGTTGTGTTTGTTGCG+TGG - tig0021301:83189-83208 Msa1389880:intron 45.0%
! GGAGAGTATATCAGATGGAG+GGG - tig0021301:83349-83368 Msa1389880:intron 45.0%
! AAGCCTTATCCCACTAAGTC+GGG + tig0021301:83489-83508 Msa1389880:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+CGG + tig0021301:83490-83509 Msa1389880:intergenic 45.0%
! GCGTTTTATGGCAGCTCAAA+TGG + tig0021301:83645-83664 Msa1389880:intergenic 45.0%
! CAACACTAGATTGAAGTGCC+GGG - tig0021301:83734-83753 Msa1389880:intron 45.0%
TGACATGATGTTCTGTGTGG+GGG - tig0021301:84010-84029 Msa1389880:CDS 45.0%
GTCAATGATTGACAGGTGCT+AGG - tig0021301:84032-84051 Msa1389880:intron 45.0%
ATGATTGACAGGTGCTAGGA+TGG - tig0021301:84036-84055 Msa1389880:intron 45.0%
! CACCATTGTGCAGGCTTTTA+AGG + tig0021301:84267-84286 Msa1389880:intergenic 45.0%
GCAAATCTTCACCATTGTGC+AGG + tig0021301:84276-84295 Msa1389880:intergenic 45.0%
CAGTTGTCAATTAGGTGCCA+AGG + tig0021301:84424-84443 Msa1389880:intergenic 45.0%
TTAACACCTGGATCTGGATC+TGG - tig0021301:84485-84504 Msa1389880:intron 45.0%
!! GGTCACTGGTTTCAAAGGAA+AGG + tig0021301:85313-85332 Msa1389880:intergenic 45.0%
!! CTACTGGTCACTGGTTTCAA+AGG + tig0021301:85318-85337 Msa1389880:intergenic 45.0%
AAACCAGTGACCAGTAGACT+TGG - tig0021301:85321-85340 Msa1389880:intron 45.0%
AAACCAAGTCTACTGGTCAC+TGG + tig0021301:85327-85346 Msa1389880:intergenic 45.0%
TGCATGCAAACCAAGTCTAC+TGG + tig0021301:85334-85353 Msa1389880:intergenic 45.0%
!! ACAGGTTGGTACAGAAGAAG+CGG - tig0021301:85703-85722 Msa1389880:intron 45.0%
GTGTCTGTGTGTATTTGCAG+CGG - tig0021301:82399-82418 Msa1389880:three_prime_UTR 45.0%
TTGCGAACGTGAATCTTGAC+GGG + tig0021301:82476-82495 Msa1389880:intergenic 45.0%
GTCAAGATTCACGTTCGCAA+AGG - tig0021301:82476-82495 Msa1389880:three_prime_UTR 45.0%
CATGGCTATGGTTATGGCTA+TGG + tig0021301:82514-82533 Msa1389880:intergenic 45.0%
CATAGCCATAACCATAGCCA+TGG - tig0021301:82512-82531 Msa1389880:three_prime_UTR 45.0%
TTCAGCTTCATCCATGGCTA+TGG + tig0021301:82526-82545 Msa1389880:intergenic 45.0%
AACGAACAGAAGGGAAGAGT+TGG + tig0021301:82563-82582 Msa1389880:intergenic 45.0%
AATCGCGAGAACGAACAGAA+GGG + tig0021301:82572-82591 Msa1389880:intergenic 45.0%
TAATCGCGAGAACGAACAGA+AGG + tig0021301:82573-82592 Msa1389880:intergenic 45.0%
GGCATGACTAGAAATCACGT+GGG - tig0021301:82954-82973 Msa1389880:intron 45.0%
CAGAAGGATTCGAAACTGCA+TGG + tig0021301:82987-83006 Msa1389880:intergenic 45.0%
TGTTGTACGAGACAGAGATG+AGG - tig0021301:83169-83188 Msa1389880:intron 45.0%
! AGGATGTTGTGTTTGTTGCG+TGG - tig0021301:83189-83208 Msa1389880:intron 45.0%
! GGAGAGTATATCAGATGGAG+GGG - tig0021301:83349-83368 Msa1389880:intron 45.0%
! AAGCCTTATCCCACTAAGTC+GGG + tig0021301:83489-83508 Msa1389880:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+CGG + tig0021301:83490-83509 Msa1389880:intergenic 45.0%
! GCGTTTTATGGCAGCTCAAA+TGG + tig0021301:83645-83664 Msa1389880:intergenic 45.0%
! CAACACTAGATTGAAGTGCC+GGG - tig0021301:83734-83753 Msa1389880:intron 45.0%
TGACATGATGTTCTGTGTGG+GGG - tig0021301:84010-84029 Msa1389880:CDS 45.0%
GTCAATGATTGACAGGTGCT+AGG - tig0021301:84032-84051 Msa1389880:intron 45.0%
ATGATTGACAGGTGCTAGGA+TGG - tig0021301:84036-84055 Msa1389880:intron 45.0%
! CACCATTGTGCAGGCTTTTA+AGG + tig0021301:84267-84286 Msa1389880:intergenic 45.0%
GCAAATCTTCACCATTGTGC+AGG + tig0021301:84276-84295 Msa1389880:intergenic 45.0%
CAGTTGTCAATTAGGTGCCA+AGG + tig0021301:84424-84443 Msa1389880:intergenic 45.0%
TTAACACCTGGATCTGGATC+TGG - tig0021301:84485-84504 Msa1389880:intron 45.0%
!! GGTCACTGGTTTCAAAGGAA+AGG + tig0021301:85313-85332 Msa1389880:intergenic 45.0%
!! CTACTGGTCACTGGTTTCAA+AGG + tig0021301:85318-85337 Msa1389880:intergenic 45.0%
AAACCAGTGACCAGTAGACT+TGG - tig0021301:85321-85340 Msa1389880:intron 45.0%
AAACCAAGTCTACTGGTCAC+TGG + tig0021301:85327-85346 Msa1389880:intergenic 45.0%
TGCATGCAAACCAAGTCTAC+TGG + tig0021301:85334-85353 Msa1389880:intergenic 45.0%
!! ACAGGTTGGTACAGAAGAAG+CGG - tig0021301:85703-85722 Msa1389880:intron 45.0%
TCTGTGTGTATTTGCAGCGG+TGG - tig0021301:82402-82421 Msa1389880:three_prime_UTR 50.0%
CAGAAGGGAAGAGTTGGAGA+AGG + tig0021301:82557-82576 Msa1389880:intergenic 50.0%
GGGCATGACTAGAAATCACG+TGG - tig0021301:82953-82972 Msa1389880:intron 50.0%
AGATAAGACACATGCGGCTG+AGG + tig0021301:83086-83105 Msa1389880:intergenic 50.0%
GTTGCGTGGTAAGACTAGAC+AGG - tig0021301:83203-83222 Msa1389880:intron 50.0%
TGACCCGACTTAGTGGGATA+AGG - tig0021301:83483-83502 Msa1389880:intron 50.0%
CGACTTAGTGGGATAAGGCT+TGG - tig0021301:83488-83507 Msa1389880:intron 50.0%
TGAGCTGCCATAAAACGCCA+TGG - tig0021301:83647-83666 Msa1389880:intron 50.0%
! TCATGTCGGTATTGGACACC+CGG + tig0021301:83755-83774 Msa1389880:intergenic 50.0%
TGTGGGGGTCAATGATTGAC+AGG - tig0021301:84025-84044 Msa1389880:intron 50.0%
! ATTCACTTGCTGCTAGACCC+TGG - tig0021301:84064-84083 Msa1389880:intron 50.0%
ATCTGGATCTGGATCTGCAC+AGG - tig0021301:84496-84515 Msa1389880:intron 50.0%
ATCTGGATCTGCACAGGAAG+AGG - tig0021301:84502-84521 Msa1389880:intron 50.0%
TGCACAGGAAGAGGTAGTTG+TGG - tig0021301:84511-84530 Msa1389880:intron 50.0%
AGGAAAGGACTAAGGAGGCA+AGG + tig0021301:85298-85317 Msa1389880:intergenic 50.0%
! TGAGAGGGGTACATGTGTGT+TGG - tig0021301:85559-85578 Msa1389880:intron 50.0%
! GAGAGGGGTACATGTGTGTT+GGG - tig0021301:85560-85579 Msa1389880:intron 50.0%
GGTACATGTGTGTTGGGCTA+GGG - tig0021301:85566-85585 Msa1389880:intron 50.0%
! CTGTGATGGTGATGTTGCAG+AGG - tig0021301:85597-85616 Msa1389880:intron 50.0%
TGGTGTGGGAATCCAAGACT+AGG - tig0021301:86280-86299 Msa1389880:CDS 50.0%
GGTGTGGGAATCCAAGACTA+GGG - tig0021301:86281-86300 Msa1389880:CDS 50.0%
TTACATGTTTCCCCCAGGTG+TGG - tig0021301:86450-86469 Msa1389880:five_prime_UTR 50.0%
TCTGTGTGTATTTGCAGCGG+TGG - tig0021301:82402-82421 Msa1389880:three_prime_UTR 50.0%
CAGAAGGGAAGAGTTGGAGA+AGG + tig0021301:82557-82576 Msa1389880:intergenic 50.0%
GGGCATGACTAGAAATCACG+TGG - tig0021301:82953-82972 Msa1389880:intron 50.0%
AGATAAGACACATGCGGCTG+AGG + tig0021301:83086-83105 Msa1389880:intergenic 50.0%
GTTGCGTGGTAAGACTAGAC+AGG - tig0021301:83203-83222 Msa1389880:intron 50.0%
TGACCCGACTTAGTGGGATA+AGG - tig0021301:83483-83502 Msa1389880:intron 50.0%
CGACTTAGTGGGATAAGGCT+TGG - tig0021301:83488-83507 Msa1389880:intron 50.0%
TGAGCTGCCATAAAACGCCA+TGG - tig0021301:83647-83666 Msa1389880:intron 50.0%
! TCATGTCGGTATTGGACACC+CGG + tig0021301:83755-83774 Msa1389880:intergenic 50.0%
TGTGGGGGTCAATGATTGAC+AGG - tig0021301:84025-84044 Msa1389880:intron 50.0%
! ATTCACTTGCTGCTAGACCC+TGG - tig0021301:84064-84083 Msa1389880:intron 50.0%
ATCTGGATCTGGATCTGCAC+AGG - tig0021301:84496-84515 Msa1389880:intron 50.0%
ATCTGGATCTGCACAGGAAG+AGG - tig0021301:84502-84521 Msa1389880:intron 50.0%
TGCACAGGAAGAGGTAGTTG+TGG - tig0021301:84511-84530 Msa1389880:intron 50.0%
AGGAAAGGACTAAGGAGGCA+AGG + tig0021301:85298-85317 Msa1389880:intergenic 50.0%
! TGAGAGGGGTACATGTGTGT+TGG - tig0021301:85559-85578 Msa1389880:intron 50.0%
! GAGAGGGGTACATGTGTGTT+GGG - tig0021301:85560-85579 Msa1389880:intron 50.0%
GGTACATGTGTGTTGGGCTA+GGG - tig0021301:85566-85585 Msa1389880:intron 50.0%
! CTGTGATGGTGATGTTGCAG+AGG - tig0021301:85597-85616 Msa1389880:intron 50.0%
TGGTGTGGGAATCCAAGACT+AGG - tig0021301:86280-86299 Msa1389880:CDS 50.0%
GGTGTGGGAATCCAAGACTA+GGG - tig0021301:86281-86300 Msa1389880:CDS 50.0%
TTACATGTTTCCCCCAGGTG+TGG - tig0021301:86450-86469 Msa1389880:five_prime_UTR 50.0%
GTGTATTTGCAGCGGTGGTG+TGG - tig0021301:82407-82426 Msa1389880:three_prime_UTR 55.0%
! AGCAGCGCCATGGCGTTTTA+TGG + tig0021301:83657-83676 Msa1389880:intergenic 55.0%
GCAGATCCAGATCCAGATCC+AGG + tig0021301:84494-84513 Msa1389880:intergenic 55.0%
GGGTACATGTGTGTTGGGCT+AGG - tig0021301:85565-85584 Msa1389880:intron 55.0%
GTGTATTTGCAGCGGTGGTG+TGG - tig0021301:82407-82426 Msa1389880:three_prime_UTR 55.0%
! AGCAGCGCCATGGCGTTTTA+TGG + tig0021301:83657-83676 Msa1389880:intergenic 55.0%
GCAGATCCAGATCCAGATCC+AGG + tig0021301:84494-84513 Msa1389880:intergenic 55.0%
GGGTACATGTGTGTTGGGCT+AGG - tig0021301:85565-85584 Msa1389880:intron 55.0%
ATGCGGCTGACCCGACTTAG+TGG - tig0021301:83476-83495 Msa1389880:intron 60.0%
TGCGGCTGACCCGACTTAGT+GGG - tig0021301:83477-83496 Msa1389880:intron 60.0%
TGTGAAGGACAGCAGCGCCA+TGG + tig0021301:83667-83686 Msa1389880:intergenic 60.0%
ATGCGGCTGACCCGACTTAG+TGG - tig0021301:83476-83495 Msa1389880:intron 60.0%
TGCGGCTGACCCGACTTAGT+GGG - tig0021301:83477-83496 Msa1389880:intron 60.0%
TGTGAAGGACAGCAGCGCCA+TGG + tig0021301:83667-83686 Msa1389880:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0021301 gene 82368 86475 82368 ID=Msa1389880;Name=Msa1389880
tig0021301 mRNA 82368 86475 82368 ID=Msa1389880-mRNA-1;Parent=Msa1389880;Name=Msa1389880-mRNA-1;_AED=0.04;_eAED=0.04;_QI=163|1|1|1|1|1|6|305|119
tig0021301 exon 82368 82726 82368 ID=Msa1389880-mRNA-1:exon:11838;Parent=Msa1389880-mRNA-1
tig0021301 exon 83077 83136 83077 ID=Msa1389880-mRNA-1:exon:11837;Parent=Msa1389880-mRNA-1
tig0021301 exon 83990 84030 83990 ID=Msa1389880-mRNA-1:exon:11836;Parent=Msa1389880-mRNA-1
tig0021301 exon 84173 84242 84173 ID=Msa1389880-mRNA-1:exon:11835;Parent=Msa1389880-mRNA-1
tig0021301 exon 84320 84388 84320 ID=Msa1389880-mRNA-1:exon:11834;Parent=Msa1389880-mRNA-1
tig0021301 exon 86247 86475 86247 ID=Msa1389880-mRNA-1:exon:11833;Parent=Msa1389880-mRNA-1
tig0021301 five_prime_UTR 86313 86475 86313 ID=Msa1389880-mRNA-1:five_prime_utr;Parent=Msa1389880-mRNA-1
tig0021301 CDS 86247 86312 86247 ID=Msa1389880-mRNA-1:cds;Parent=Msa1389880-mRNA-1
tig0021301 CDS 84320 84388 84320 ID=Msa1389880-mRNA-1:cds;Parent=Msa1389880-mRNA-1
tig0021301 CDS 84173 84242 84173 ID=Msa1389880-mRNA-1:cds;Parent=Msa1389880-mRNA-1
tig0021301 CDS 83990 84030 83990 ID=Msa1389880-mRNA-1:cds;Parent=Msa1389880-mRNA-1
tig0021301 CDS 83077 83136 83077 ID=Msa1389880-mRNA-1:cds;Parent=Msa1389880-mRNA-1
tig0021301 CDS 82673 82726 82673 ID=Msa1389880-mRNA-1:cds;Parent=Msa1389880-mRNA-1
tig0021301 three_prime_UTR 82368 82672 82368 ID=Msa1389880-mRNA-1:three_prime_utr;Parent=Msa1389880-mRNA-1
Gene Sequence

>Msa1389880

ATGGATGAAGCTGAATTTCAACGCCTTCTCCAACTCTTCCCTTCTGTTCGTTCTCGCGATTACATCGAAGAATCATCATCATCATCATCCAGACAATTAACACCTGGATCTGGATCTGGATCTGCACAGGAAGAGCTAAATGAATGGCATGATGCATGGAATGAAAAGGATAAGGATTTTGAGAATCAAGGAATCAACAAACATGATTCATTTTGGAACAAGCTAAAGTCAGAGGCTGCTAAAAAGGTTGGTACAGAAGAAGCGGAAAGATTTTGCAAGGCGTTTCAACAAATTCATAAGAGACTAGTCAATGAAGAGTTAAGTTTAGATGTTGCTCGAAAATTGGTAAACTCATCCTAA

Protein sequence

>Msa1389880

MDEAEFQRLLQLFPSVRSRDYIEESSSSSSRQLTPGSGSGSAQEELNEWHDAWNEKDKDFENQGINKHDSFWNKLKSEAAKKVGTEEAERFCKAFQQIHKRLVNEELSLDVARKLVNSS*