Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829080 | XP_003603340.2 | 96.546 | 579 | 15 | 2 | 1 | 578 | 1 | 575 | 0.0 | 1140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829080 | G7JAF2 | 96.546 | 579 | 15 | 2 | 1 | 578 | 1 | 575 | 0.0 | 1140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092950 | Msa0829080 | 0.988780 | 2.214941e-175 | -8.615850e-47 |
| Msa0612520 | Msa0829080 | 0.810526 | 1.103266e-50 | -8.615850e-47 |
| Msa0653160 | Msa0829080 | 0.805855 | 1.091089e-49 | -8.615850e-47 |
| Msa0829080 | Msa1046120 | 0.805394 | 1.363602e-49 | -8.615850e-47 |
| Msa0829080 | Msa1079640 | 0.809840 | 1.550574e-50 | -8.615850e-47 |
| Msa0829080 | Msa1091050 | 0.808361 | 3.216043e-50 | -8.615850e-47 |
| Msa0829080 | Msa1124470 | 0.808558 | 2.919844e-50 | -8.615850e-47 |
| Msa0829080 | Msa1133970 | 0.808817 | 2.570135e-50 | -8.615850e-47 |
| Msa0829080 | Msa1134040 | 0.809702 | 1.660572e-50 | -8.615850e-47 |
| Msa0829080 | Msa1342810 | 0.804502 | 2.094629e-49 | -8.615850e-47 |
| Msa0829080 | Msa1377530 | 0.802073 | 6.669622e-49 | -8.615850e-47 |
| Msa0432690 | Msa0829080 | 0.807843 | 4.147047e-50 | -8.615850e-47 |
| Msa0464050 | Msa0829080 | 0.807820 | 4.193328e-50 | -8.615850e-47 |
| Msa0466520 | Msa0829080 | 0.804963 | 1.678309e-49 | -8.615850e-47 |
| Msa0476790 | Msa0829080 | 0.996648 | 2.657031e-230 | -8.615850e-47 |
| Msa0521170 | Msa0829080 | 0.990837 | 1.435977e-184 | -8.615850e-47 |
| Msa0521320 | Msa0829080 | 0.827006 | 1.985418e-54 | -8.615850e-47 |
| Msa0557850 | Msa0829080 | 0.801501 | 8.742071e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829080 | MtrunA17_Chr3g0137351 | 96.546 | 579 | 15 | 2 | 1 | 578 | 1 | 575 | 0.0 | 1140 |
| Msa0829080 | MtrunA17_Chr2g0304631 | 61.588 | 466 | 179 | 0 | 58 | 523 | 59 | 524 | 0.0 | 587 |
| Msa0829080 | MtrunA17_Chr1g0208531 | 43.460 | 474 | 265 | 3 | 52 | 524 | 62 | 533 | 8.97e-140 | 417 |
| Msa0829080 | MtrunA17_Chr4g0065031 | 44.578 | 249 | 137 | 1 | 57 | 305 | 67 | 314 | 1.07e-64 | 214 |
| Msa0829080 | MtrunA17_Chr4g0065021 | 45.972 | 211 | 108 | 1 | 314 | 524 | 1 | 205 | 2.59e-60 | 199 |
| Msa0829080 | MtrunA17_Chr2g0329621 | 23.579 | 475 | 307 | 12 | 66 | 516 | 44 | 486 | 2.95e-40 | 153 |
| Msa0829080 | MtrunA17_Chr5g0401081 | 23.191 | 470 | 302 | 17 | 69 | 510 | 42 | 480 | 3.58e-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829080 | AT2G25270.1 | 58.442 | 462 | 192 | 0 | 57 | 518 | 66 | 527 | 0.0 | 605 |
| Msa0829080 | AT2G12400.1 | 59.494 | 474 | 192 | 0 | 50 | 523 | 54 | 527 | 0.0 | 570 |
| Msa0829080 | AT1G80540.3 | 46.154 | 468 | 248 | 3 | 61 | 524 | 18 | 485 | 2.17e-135 | 403 |
| Msa0829080 | AT1G80540.1 | 46.154 | 468 | 248 | 3 | 61 | 524 | 64 | 531 | 2.22e-135 | 405 |
| Msa0829080 | AT1G71110.1 | 42.857 | 476 | 258 | 5 | 61 | 527 | 66 | 536 | 3.99e-133 | 400 |
| Msa0829080 | AT1G80540.2 | 45.623 | 377 | 203 | 2 | 150 | 524 | 2 | 378 | 1.27e-106 | 326 |
| Msa0829080 | AT5G67550.1 | 23.593 | 462 | 312 | 16 | 66 | 503 | 35 | 479 | 4.79e-25 | 109 |
Find 142 sgRNAs with CRISPR-Local
Find 492 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATCCTTGTCACCTTTC+AGG | 0.139855 | 5_4:-2044274 | None:intergenic |
| TGATGTTCTCCTTGATCTTT+TGG | 0.146015 | 5_4:+2044043 | Msa0829080:CDS |
| CATTTATTCCAGCGGATATT+TGG | 0.187146 | 5_4:-2043861 | None:intergenic |
| TATAGTAAATTGATTTATAT+TGG | 0.209299 | 5_4:+2043997 | Msa0829080:CDS |
| CTTGTCACCTTTCAGGGATA+TGG | 0.218444 | 5_4:-2044267 | None:intergenic |
| TGAACAATATGAGGAGAATA+AGG | 0.239883 | 5_4:-2041616 | None:intergenic |
| TTCCGTGTGATGCAGGTATA+TGG | 0.256029 | 5_4:+2043766 | Msa0829080:intron |
| AGCGGATATTTGGTTATAAA+AGG | 0.257211 | 5_4:-2043851 | None:intergenic |
| ATGCTAGTATTGACGTTTCT+TGG | 0.262824 | 5_4:+2042138 | Msa0829080:CDS |
| GGAACAAACCACATAATATA+AGG | 0.268760 | 5_4:-2042521 | None:intergenic |
| GCAGGATGGTTTCTTGTTAC+TGG | 0.271995 | 5_4:+2042495 | Msa0829080:CDS |
| GTAGTACAGCGGCGTAAAAT+TGG | 0.276338 | 5_4:-2042961 | None:intergenic |
| ACTAGTAGTAAGAATTTAAA+TGG | 0.285203 | 5_4:+2044389 | Msa0829080:three_prime_UTR |
| ATATCAGTGACCGTCATTAT+TGG | 0.295949 | 5_4:+2041065 | Msa0829080:CDS |
| GCAGTCTGGTTCTTAGGCTT+TGG | 0.311251 | 5_4:+2041509 | Msa0829080:CDS |
| AAACTTACTTGTGGAGAATA+AGG | 0.324746 | 5_4:-2042542 | None:intergenic |
| CTGTATTTGCAGTAGGATAT+TGG | 0.332325 | 5_4:-2042803 | None:intergenic |
| GATTTATATTGGATTAATAA+TGG | 0.334317 | 5_4:+2044008 | Msa0829080:CDS |
| CTCGTGTCTGATTCTTTATC+CGG | 0.336847 | 5_4:-2044456 | None:intergenic |
| ATTGCAGCAGTCTGGTTCTT+AGG | 0.348182 | 5_4:+2041503 | Msa0829080:CDS |
| TAGTACAGCGGCGTAAAATT+GGG | 0.367058 | 5_4:-2042960 | None:intergenic |
| TATATCCTTGTCACCTTTCA+GGG | 0.377226 | 5_4:-2044273 | None:intergenic |
| TATCAGTGACCGTCATTATT+GGG | 0.381706 | 5_4:+2041066 | Msa0829080:CDS |
| TGTCGTAAAACCGAGCCTTA+TGG | 0.388594 | 5_4:+2041566 | Msa0829080:CDS |
| CGATGGGGCATAATTATATA+AGG | 0.389069 | 5_4:-2043893 | None:intergenic |
| TCCTTGTCACAACTCACTTC+AGG | 0.391449 | 5_4:+2040664 | Msa0829080:CDS |
| AGTGGAAGAGTGACATAGTA+AGG | 0.409592 | 5_4:-2040635 | None:intergenic |
| TTGTCACCTTTCAGGGATAT+GGG | 0.414216 | 5_4:-2044266 | None:intergenic |
| TATTCAGCATTGCAGCAGTC+TGG | 0.424528 | 5_4:+2041495 | Msa0829080:CDS |
| GGATGTGCAGTGCTATATAT+TGG | 0.430073 | 5_4:+2041736 | Msa0829080:CDS |
| CGTCTTGTTGGTGCAGGTGC+AGG | 0.435124 | 5_4:-2044174 | None:intergenic |
| ATATGGGAACTTTGTGTGCC+AGG | 0.442707 | 5_4:+2043783 | Msa0829080:CDS |
| AGTTCAAGTGCATGACTTGA+TGG | 0.451478 | 5_4:-2044240 | None:intergenic |
| ACTGGCACCCTTATATTATG+TGG | 0.460712 | 5_4:+2042513 | Msa0829080:CDS |
| ATATTGGATCCACTCATTCA+TGG | 0.460754 | 5_4:-2042787 | None:intergenic |
| ACAGATATCAATGCTTCTGC+TGG | 0.461889 | 5_4:+2041934 | Msa0829080:CDS |
| GAACAAACCACATAATATAA+GGG | 0.462102 | 5_4:-2042520 | None:intergenic |
| TGCTGTGGCTTTGTCCACAC+AGG | 0.463296 | 5_4:-2042844 | None:intergenic |
| AACATAAAGTGGAGAAAGAA+TGG | 0.463953 | 5_4:-2040542 | None:intergenic |
| GGTGTAGGTGCACGTCTTGT+TGG | 0.466169 | 5_4:-2044153 | None:intergenic |
| TTACCTTGCTCAAGCTAAGC+TGG | 0.468609 | 5_4:+2041852 | Msa0829080:CDS |
| AGAAGAAAAGATCCACTTGA+TGG | 0.469125 | 5_4:+2041016 | Msa0829080:CDS |
| AGGTAGGGGTTAAACGTCCT+TGG | 0.469945 | 5_4:-2043831 | None:intergenic |
| GGTGTAAGTGCAAGTCTTGT+TGG | 0.470877 | 5_4:-2044219 | None:intergenic |
| TGAACTGGAAAAGGAGAATC+CGG | 0.471494 | 5_4:+2044437 | Msa0829080:three_prime_UTR |
| CAACAATGTTTCTTGTGCTG+TGG | 0.471860 | 5_4:-2042859 | None:intergenic |
| GTACCTGTGTGGCGTTGCTT+AGG | 0.484831 | 5_4:-2043070 | None:intergenic |
| GATATTTGGTTATAAAAGGT+AGG | 0.486319 | 5_4:-2043847 | None:intergenic |
| TGTGTGTGTGGGAGAGAAAG+AGG | 0.492504 | 5_4:-2040459 | None:intergenic |
| GACCGTGATGCGGCATCAAA+GGG | 0.492792 | 5_4:-2048544 | None:intergenic |
| CTCTCTGCAGCTAAGGGAAG+TGG | 0.497169 | 5_4:-2040989 | None:intergenic |
| TCTAGTTCTCTCTGCAGCTA+AGG | 0.498856 | 5_4:-2040996 | None:intergenic |
| TTGTGACAAGGAAGAAGAAG+TGG | 0.499997 | 5_4:-2040653 | None:intergenic |
| GAACAATATGAGGAGAATAA+GGG | 0.501658 | 5_4:-2041615 | None:intergenic |
| AACTTCTGAACTAGTTAACT+TGG | 0.502064 | 5_4:+2042896 | Msa0829080:CDS |
| ATATTTGGTTATAAAAGGTA+GGG | 0.504148 | 5_4:-2043846 | None:intergenic |
| GGGAAAGAAAATGAGGGAAA+TGG | 0.506714 | 5_4:+2040914 | Msa0829080:intron |
| ATATCTGTTTGAACATTAGC+GGG | 0.507500 | 5_4:-2041898 | None:intergenic |
| AGACCGTGATGCGGCATCAA+AGG | 0.510081 | 5_4:-2048545 | None:intergenic |
| TGAAAGTTAGAAACATAAAG+TGG | 0.510317 | 5_4:-2040553 | None:intergenic |
| GGAAGTGGTGAGTTCTCATA+TGG | 0.510395 | 5_4:-2040974 | None:intergenic |
| AGTGCAGGTGCACGTCTTGT+TGG | 0.512032 | 5_4:-2044186 | None:intergenic |
| TCCGTGTGATGCAGGTATAT+GGG | 0.515336 | 5_4:+2043767 | Msa0829080:intron |
| TAGAGACATTAGTAATAACT+TGG | 0.516630 | 5_4:-2042923 | None:intergenic |
| TTATAAATGTGAACAATATG+AGG | 0.516953 | 5_4:-2041625 | None:intergenic |
| GGTAGGGGTTAAACGTCCTT+GGG | 0.518838 | 5_4:-2043830 | None:intergenic |
| ATGAACATTGTCCTGGTCTA+CGG | 0.519643 | 5_4:+2043971 | Msa0829080:CDS |
| AACTTGGTACCACTGGCAAA+TGG | 0.520300 | 5_4:-2040493 | None:intergenic |
| TAACTCAAACTTGGTACCAC+TGG | 0.520920 | 5_4:-2040500 | None:intergenic |
| GGTGCACGTCTTGTTGGTGC+AGG | 0.521105 | 5_4:-2044180 | None:intergenic |
| GAGGAGTGGCATCAAGGGAC+CGG | 0.522360 | 5_4:-2042991 | None:intergenic |
| TATGTTGAAGAATAACCATA+AGG | 0.524244 | 5_4:-2041581 | None:intergenic |
| GTTGGTGCAGGTGCAAGTGC+AGG | 0.524450 | 5_4:-2044201 | None:intergenic |
| AAAGGGATTATGTTTGAGCT+AGG | 0.525254 | 5_4:-2048527 | None:intergenic |
| CACTGTTTGCCATTTGCCAG+TGG | 0.528837 | 5_4:+2040484 | Msa0829080:five_prime_UTR |
| GTTGGTGCAGGTGCAGGTGT+AGG | 0.529964 | 5_4:-2044168 | None:intergenic |
| CATTGTCTATCTGTCATGTC+AGG | 0.531193 | 5_4:-2043029 | None:intergenic |
| GGCTTCAATAAATACATAAG+TGG | 0.531993 | 5_4:+2041037 | Msa0829080:CDS |
| CTTGCTCAAGCTAAGCTGGT+TGG | 0.532960 | 5_4:+2041856 | Msa0829080:CDS |
| TCGCAGAGGAGTGGCATCAA+GGG | 0.535332 | 5_4:-2042996 | None:intergenic |
| GTGTATTCTTAACTCAAACT+TGG | 0.536382 | 5_4:-2040509 | None:intergenic |
| ACTGCTGCAATGCTGAATAC+AGG | 0.538751 | 5_4:-2041491 | None:intergenic |
| TAAAACATCATTTATCAATG+AGG | 0.539307 | 5_4:-2044306 | None:intergenic |
| CTAGTTCTCTCTGCAGCTAA+GGG | 0.540598 | 5_4:-2040995 | None:intergenic |
| ATCGCAGAGGAGTGGCATCA+AGG | 0.541147 | 5_4:-2042997 | None:intergenic |
| AACATCGACGTTGCAATATG+TGG | 0.549172 | 5_4:+2041783 | Msa0829080:CDS |
| TGTGAATGTTTCTCGAACAA+AGG | 0.550831 | 5_4:-2043938 | None:intergenic |
| AATATCTGTTTGAACATTAG+CGG | 0.550951 | 5_4:-2041899 | None:intergenic |
| ATATACAATGAACATTGTCC+TGG | 0.555015 | 5_4:+2043964 | Msa0829080:CDS |
| TCAATAAATACATAAGTGGA+TGG | 0.556341 | 5_4:+2041041 | Msa0829080:CDS |
| CTTGTAGCTCAACAAGCGAT+GGG | 0.562399 | 5_4:-2043909 | None:intergenic |
| GATTATGTTTGAGCTAGGAC+CGG | 0.564430 | 5_4:-2048522 | None:intergenic |
| AGTGCAAGTCTTGTTGGTGC+AGG | 0.565751 | 5_4:-2044213 | None:intergenic |
| TGGGTCATGCATATCTCTGA+TGG | 0.568666 | 5_4:-2043811 | None:intergenic |
| TATTTGGTTATAAAAGGTAG+GGG | 0.569300 | 5_4:-2043845 | None:intergenic |
| TCTTGTAGCTCAACAAGCGA+TGG | 0.573873 | 5_4:-2043910 | None:intergenic |
| GGTGCACGTCTTGTTGGTGC+AGG | 0.574585 | 5_4:-2044147 | None:intergenic |
| GTGAGCCTGATACAGGAGGC+TGG | 0.576237 | 5_4:+2042092 | Msa0829080:intron |
| ATATCCGCTGGAATAAATGT+TGG | 0.576568 | 5_4:+2043865 | Msa0829080:CDS |
| AATTGCAGCTTGGTAATCGC+AGG | 0.576626 | 5_4:+2042477 | Msa0829080:intron |
| CAGATATCAATGCTTCTGCT+GGG | 0.577740 | 5_4:+2041935 | Msa0829080:CDS |
| TCGAGAGCTGTATTTGCAGT+AGG | 0.579126 | 5_4:-2042810 | None:intergenic |
| TTTCCAGGGAAAGAAAATGA+GGG | 0.581174 | 5_4:+2040908 | Msa0829080:intron |
| TATTTATTGAAGCCATCAAG+TGG | 0.584127 | 5_4:-2041028 | None:intergenic |
| ATACACACCCCAAAAGATCA+AGG | 0.584372 | 5_4:-2044052 | None:intergenic |
| CCGCTGTACTACAATCAATC+CGG | 0.592455 | 5_4:+2042972 | Msa0829080:CDS |
| AGTACAGCGGCGTAAAATTG+GGG | 0.593342 | 5_4:-2042959 | None:intergenic |
| TTACTATAATGCCGTAGACC+AGG | 0.595943 | 5_4:-2043982 | None:intergenic |
| TGAAGAATAACCATAAGGCT+CGG | 0.600991 | 5_4:-2041576 | None:intergenic |
| CAACCAGCTTAGCTTGAGCA+AGG | 0.602100 | 5_4:-2041855 | None:intergenic |
| GTTGGTGCAGGAGCTCGTGT+AGG | 0.611574 | 5_4:-2044135 | None:intergenic |
| ATATCTCTGATGGTGAAACC+TGG | 0.616906 | 5_4:-2043801 | None:intergenic |
| TCTGTCATGTCAGGACGGAA+CGG | 0.617776 | 5_4:-2043020 | None:intergenic |
| TAGGTTTGATGTATTTGCTG+CGG | 0.619393 | 5_4:+2040949 | Msa0829080:CDS |
| GTCTATCTGTCATGTCAGGA+CGG | 0.620648 | 5_4:-2043025 | None:intergenic |
| ACAGATAGACAATGTGACTC+TGG | 0.622158 | 5_4:+2043038 | Msa0829080:CDS |
| GCAAACAGTGAGTGTGTGTG+TGG | 0.623319 | 5_4:-2040471 | None:intergenic |
| GCAGCTTGGTAATCGCAGGA+TGG | 0.623748 | 5_4:+2042481 | Msa0829080:intron |
| CATGTGTAGCCATGAATGAG+TGG | 0.627764 | 5_4:+2042778 | Msa0829080:CDS |
| GAACCTAAGCAACGCCACAC+AGG | 0.630361 | 5_4:+2043067 | Msa0829080:CDS |
| CATATCCCTGAAAGGTGACA+AGG | 0.630948 | 5_4:+2044268 | Msa0829080:exon |
| AGGTTACAGCCCAATAATGA+CGG | 0.632883 | 5_4:-2041075 | None:intergenic |
| GCTGTGGCTTTGTCCACACA+GGG | 0.637372 | 5_4:-2042843 | None:intergenic |
| ATTTCACTTACATGTACACA+AGG | 0.639891 | 5_4:-2042310 | None:intergenic |
| GTATCAAGCTGATTCTGCTG+TGG | 0.640686 | 5_4:+2041807 | Msa0829080:CDS |
| GGGGTGTGTATGGAAGAGAG+CGG | 0.642171 | 5_4:+2044064 | Msa0829080:CDS |
| ACCTGAAGTGAGTTGTGACA+AGG | 0.644198 | 5_4:-2040665 | None:intergenic |
| ACTTAGCCCATATCCCTGAA+AGG | 0.648925 | 5_4:+2044260 | Msa0829080:exon |
| CGGAACGGATCGCAGAGGAG+TGG | 0.649357 | 5_4:-2043005 | None:intergenic |
| GACAGAAGTAACAAACAATG+AGG | 0.650146 | 5_4:-2041547 | None:intergenic |
| GTTACCAACATTTATTCCAG+CGG | 0.668217 | 5_4:-2043869 | None:intergenic |
| CGACGATATACTGCCCTGTG+TGG | 0.675578 | 5_4:+2042830 | Msa0829080:CDS |
| GTACAGCGGCGTAAAATTGG+GGG | 0.677666 | 5_4:-2042958 | None:intergenic |
| TCAGAGATATGCATGACCCA+AGG | 0.692493 | 5_4:+2043814 | Msa0829080:CDS |
| CATTCAATTATGTACCTGTG+TGG | 0.698431 | 5_4:-2043081 | None:intergenic |
| TTGTAGCTCAACAAGCGATG+GGG | 0.699834 | 5_4:-2043908 | None:intergenic |
| TGTTCAAACAGATATTGATG+CGG | 0.701433 | 5_4:+2041906 | Msa0829080:CDS |
| GCAGTGCTATATATTGGACA+AGG | 0.702087 | 5_4:+2041742 | Msa0829080:CDS |
| GTGTGTATGGAAGAGAGCGG+AGG | 0.703717 | 5_4:+2044067 | Msa0829080:CDS |
| CAAACAGTGAGTGTGTGTGT+GGG | 0.704255 | 5_4:-2040470 | None:intergenic |
| CAGGACGGAACGGATCGCAG+AGG | 0.716395 | 5_4:-2043010 | None:intergenic |
| CCGGATTGATTGTAGTACAG+CGG | 0.723016 | 5_4:-2042972 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAATAAAAAATAT+TGG | + | chr5_4:2046934-2046953 | Msa0829080:intron | 0.0% |
| !! | AACATATCTATAAAATTATA+TGG | - | chr5_4:2042603-2042622 | None:intergenic | 10.0% |
| !!! | TATAGTAAATTGATTTATAT+TGG | + | chr5_4:2043997-2044016 | Msa0829080:CDS | 10.0% |
| !!! | ATTTTGCTTATATTTTAAAA+CGG | + | chr5_4:2045927-2045946 | Msa0829080:intron | 10.0% |
| !!! | ATATACGATATTATTATTTT+TGG | + | chr5_4:2047077-2047096 | Msa0829080:intron | 10.0% |
| !!! | TATACGATATTATTATTTTT+GGG | + | chr5_4:2047078-2047097 | Msa0829080:intron | 10.0% |
| !!! | AAAACTAATTAATCTTTTTA+TGG | + | chr5_4:2047261-2047280 | Msa0829080:intron | 10.0% |
| !! | AAAAGATAAATTAAATGTAT+TGG | + | chr5_4:2047932-2047951 | Msa0829080:intron | 10.0% |
| !!! | ATAAAGTCTAAATTTTATTT+AGG | + | chr5_4:2048365-2048384 | Msa0829080:intron | 10.0% |
| !! | TTAATTATCGTTGTTAATTA+AGG | + | chr5_4:2041136-2041155 | Msa0829080:intron | 15.0% |
| !!! | GGTATTTTATGAATTTTTTT+TGG | - | chr5_4:2043403-2043422 | None:intergenic | 15.0% |
| !! | GGATATATTTATGTAAAATT+TGG | - | chr5_4:2043601-2043620 | None:intergenic | 15.0% |
| !! | GATATAAAATGATTTATGTT+TGG | - | chr5_4:2043622-2043641 | None:intergenic | 15.0% |
| !! | GATTTATATTGGATTAATAA+TGG | + | chr5_4:2044008-2044027 | Msa0829080:CDS | 15.0% |
| !!! | GATTATTATTTTTTCTGTAT+TGG | + | chr5_4:2044339-2044358 | Msa0829080:three_prime_UTR | 15.0% |
| !!! | AATTTGATTTGATTTTATGT+TGG | + | chr5_4:2044754-2044773 | Msa0829080:intron | 15.0% |
| !! | ATAAACCATCAATTAAAAAA+AGG | + | chr5_4:2045235-2045254 | Msa0829080:intron | 15.0% |
| !! | TAAACCATCAATTAAAAAAA+GGG | + | chr5_4:2045236-2045255 | Msa0829080:intron | 15.0% |
| !!! | ATATGAGTTTACTTTAAAAT+AGG | + | chr5_4:2045625-2045644 | Msa0829080:intron | 15.0% |
| !!! | TATGAGTTTACTTTAAAATA+GGG | + | chr5_4:2045626-2045645 | Msa0829080:intron | 15.0% |
| !!! | CATTCAGTTTTTTTTTTTAA+GGG | - | chr5_4:2045760-2045779 | None:intergenic | 15.0% |
| !!! | TCATTCAGTTTTTTTTTTTA+AGG | - | chr5_4:2045761-2045780 | None:intergenic | 15.0% |
| !!! | TTTGAGTTTTTTTATTTTTG+AGG | - | chr5_4:2046231-2046250 | None:intergenic | 15.0% |
| !! | ATTGAAATCTTAAATTATTG+AGG | - | chr5_4:2046500-2046519 | None:intergenic | 15.0% |
| !! | TTAAGTATGGTATAATAATT+TGG | + | chr5_4:2046911-2046930 | Msa0829080:intron | 15.0% |
| !!! | TATTTACTACCTTTTTTTTT+AGG | + | chr5_4:2047025-2047044 | Msa0829080:intron | 15.0% |
| !! | ATATAATCTCCTAAAAAAAA+AGG | - | chr5_4:2047037-2047056 | None:intergenic | 15.0% |
| !!! | ATTATTTTTGGGTAAAATAA+TGG | + | chr5_4:2047089-2047108 | Msa0829080:intron | 15.0% |
| !!! | TTTTCTCATCATTTTTTTTA+AGG | - | chr5_4:2047244-2047263 | None:intergenic | 15.0% |
| !! | ATGAAAAATAATATAAGATG+TGG | + | chr5_4:2047431-2047450 | Msa0829080:intron | 15.0% |
| !! | TTTGTAAAAATAAATGTCAT+TGG | - | chr5_4:2047542-2047561 | None:intergenic | 15.0% |
| !! | AAAAGAAAAAAAGTTAAGCA+AGG | - | chr5_4:2040834-2040853 | None:intergenic | 20.0% |
| !!! | AATTTTGGACAACTAATTTT+TGG | + | chr5_4:2041211-2041230 | Msa0829080:intron | 20.0% |
| !! | AAAATTCAATACCAACTAAA+AGG | - | chr5_4:2041400-2041419 | None:intergenic | 20.0% |
| !! | TTATAAATGTGAACAATATG+AGG | - | chr5_4:2041628-2041647 | None:intergenic | 20.0% |
| !!! | ACAATTTCTTATTGTTATTG+AGG | + | chr5_4:2042192-2042211 | Msa0829080:intron | 20.0% |
| !! | GGTGATAATTAAAATTTATG+TGG | - | chr5_4:2042678-2042697 | None:intergenic | 20.0% |
| !! | TTTAATTATATTAGAATGGG+TGG | - | chr5_4:2043376-2043395 | None:intergenic | 20.0% |
| !!! | TTTTATATCAACTGACTTTT+AGG | + | chr5_4:2043633-2043652 | Msa0829080:intron | 20.0% |
| !! | ATATTTGGTTATAAAAGGTA+GGG | - | chr5_4:2043849-2043868 | None:intergenic | 20.0% |
| !! | TAAAACATCATTTATCAATG+AGG | - | chr5_4:2044309-2044328 | None:intergenic | 20.0% |
| !! | ACTAGTAGTAAGAATTTAAA+TGG | + | chr5_4:2044389-2044408 | Msa0829080:three_prime_UTR | 20.0% |
| !!! | TATTTTATATGAACTGGAAA+AGG | + | chr5_4:2044428-2044447 | Msa0829080:three_prime_UTR | 20.0% |
| !! | CAAATTTGTCTACAATTTAA+TGG | - | chr5_4:2044740-2044759 | None:intergenic | 20.0% |
| !!! | AAGTTTAAGATTGAAAACAA+CGG | + | chr5_4:2044864-2044883 | Msa0829080:intron | 20.0% |
| !!! | GATTCTAACTAACTTTTATA+TGG | + | chr5_4:2045054-2045073 | Msa0829080:intron | 20.0% |
| !!! | TTAACCCTTTTTTTAATTGA+TGG | - | chr5_4:2045243-2045262 | None:intergenic | 20.0% |
| !!! | AAAAGGGTTAATTATGTTTT+TGG | + | chr5_4:2045252-2045271 | Msa0829080:intron | 20.0% |
| !! | GAAAAGTTGCTATATTTATA+GGG | - | chr5_4:2045279-2045298 | None:intergenic | 20.0% |
| !!! | TAGTGATTGAAAGTTTTATA+GGG | - | chr5_4:2045339-2045358 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr5_4:2045653-2045672 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr5_4:2045656-2045675 | Msa0829080:intron | 20.0% |
| !!! | TGAAAAGTTGGTATATTTAT+AGG | + | chr5_4:2045716-2045735 | Msa0829080:intron | 20.0% |
| !!! | GAAAAGTTGGTATATTTATA+GGG | + | chr5_4:2045717-2045736 | Msa0829080:intron | 20.0% |
| !!! | TTAAGGGTTAAATATGTTTT+TGG | - | chr5_4:2045744-2045763 | None:intergenic | 20.0% |
| !!! | ATTTTGCTTATATTTTGAGA+CGG | - | chr5_4:2045820-2045839 | None:intergenic | 20.0% |
| !!! | ATAAGCAAAATTCACTTTTT+AGG | + | chr5_4:2045829-2045848 | Msa0829080:intron | 20.0% |
| !!! | ATAAGCAAAATTCACTTTTT+AGG | - | chr5_4:2045829-2045848 | None:intergenic | 20.0% |
| !! | TAAGTATAACTATTCACTTT+AGG | - | chr5_4:2046004-2046023 | None:intergenic | 20.0% |
| !! | AATTCAATGTATTATTCATC+CGG | + | chr5_4:2046036-2046055 | Msa0829080:intron | 20.0% |
| !!! | TATATTTTACGGTATAGAAT+TGG | + | chr5_4:2046129-2046148 | Msa0829080:intron | 20.0% |
| !!! | TTTTTAAAACTCACAAACAA+GGG | - | chr5_4:2046369-2046388 | None:intergenic | 20.0% |
| !!! | TTTTTTAAAACTCACAAACA+AGG | - | chr5_4:2046370-2046389 | None:intergenic | 20.0% |
| !!! | TTTGTGAGTTTTAAAAAAAG+AGG | + | chr5_4:2046372-2046391 | Msa0829080:intron | 20.0% |
| !!! | TTGTGAGTTTTAAAAAAAGA+GGG | + | chr5_4:2046373-2046392 | Msa0829080:intron | 20.0% |
| !! | TAGTTGTTGTCAAATAAATA+TGG | - | chr5_4:2047005-2047024 | None:intergenic | 20.0% |
| !! | TGTCGAATAATTTATTAATG+TGG | - | chr5_4:2047166-2047185 | None:intergenic | 20.0% |
| !! | TTTCATTCAAAATAGTACTT+TGG | + | chr5_4:2047576-2047595 | Msa0829080:intron | 20.0% |
| !! | AAAACTATGATTAATTAGCA+TGG | + | chr5_4:2047805-2047824 | Msa0829080:intron | 20.0% |
| !!! | CTTAAATATTGATTTGAGAT+TGG | - | chr5_4:2048144-2048163 | None:intergenic | 20.0% |
| !! | CACTTAAAATTGTATGAATT+AGG | + | chr5_4:2048195-2048214 | Msa0829080:intron | 20.0% |
| !!! | TTGGATATATTCATTTTCTT+AGG | + | chr5_4:2048296-2048315 | Msa0829080:intron | 20.0% |
| ! | TGAAAGTTAGAAACATAAAG+TGG | - | chr5_4:2040556-2040575 | None:intergenic | 25.0% |
| !!! | CATTATTTTTTAGACAATGC+AGG | + | chr5_4:2040778-2040797 | Msa0829080:intron | 25.0% |
| !!! | CTTTTCTTTTCATTTTTCCA+GGG | + | chr5_4:2040894-2040913 | Msa0829080:intron | 25.0% |
| ! | TCAATAAATACATAAGTGGA+TGG | + | chr5_4:2041041-2041060 | Msa0829080:CDS | 25.0% |
| !! | GAACAAATTTTATTGAGCAA+GGG | - | chr5_4:2041108-2041127 | None:intergenic | 25.0% |
| !! | AGAACAAATTTTATTGAGCA+AGG | - | chr5_4:2041109-2041128 | None:intergenic | 25.0% |
| ! | TCTATTATAACTGTGTTAAC+CGG | - | chr5_4:2041259-2041278 | None:intergenic | 25.0% |
| ! | GTTAACACAGTTATAATAGA+TGG | + | chr5_4:2041259-2041278 | Msa0829080:intron | 25.0% |
| ! | GTATATTCATTAAGCATCTA+AGG | - | chr5_4:2041296-2041315 | None:intergenic | 25.0% |
| !! | ACACTTATTAACCATGATTT+TGG | + | chr5_4:2041325-2041344 | Msa0829080:intron | 25.0% |
| ! | ATTTGAACACCTGAAAATTA+TGG | - | chr5_4:2041361-2041380 | None:intergenic | 25.0% |
| ! | TATGTTGAAGAATAACCATA+AGG | - | chr5_4:2041584-2041603 | None:intergenic | 25.0% |
| !!! | TTTCTATTCCTTTGTTTTTC+TGG | + | chr5_4:2041665-2041684 | Msa0829080:intron | 25.0% |
| ! | AATATCTGTTTGAACATTAG+CGG | - | chr5_4:2041902-2041921 | None:intergenic | 25.0% |
| !! | TATACAGTGTTCTCAATTTT+CGG | + | chr5_4:2042278-2042297 | Msa0829080:intron | 25.0% |
| !! | AAAGAGTATATAAGTGTAAG+TGG | - | chr5_4:2042345-2042364 | None:intergenic | 25.0% |
| ! | TAAAATGGTGCGTATAAAAA+GGG | - | chr5_4:2042372-2042391 | None:intergenic | 25.0% |
| ! | GAACAAACCACATAATATAA+GGG | - | chr5_4:2042523-2042542 | None:intergenic | 25.0% |
| !! | ATTCAGATTTTACTAGCTAA+GGG | - | chr5_4:2042568-2042587 | None:intergenic | 25.0% |
| !! | AATTCAGATTTTACTAGCTA+AGG | - | chr5_4:2042569-2042588 | None:intergenic | 25.0% |
| ! | ATTTCTCAAATACATCTATG+AGG | - | chr5_4:2042699-2042718 | None:intergenic | 25.0% |
| ! | TAGAGACATTAGTAATAACT+TGG | - | chr5_4:2042926-2042945 | None:intergenic | 25.0% |
| ! | CAAAATTAATTCTACTCCAT+GGG | - | chr5_4:2043494-2043513 | None:intergenic | 25.0% |
| !! | ATAGTTTAAAACATTTGCCT+TGG | + | chr5_4:2043545-2043564 | Msa0829080:intron | 25.0% |
| ! | TATTTGGTTATAAAAGGTAG+GGG | - | chr5_4:2043848-2043867 | None:intergenic | 25.0% |
| ! | GATATTTGGTTATAAAAGGT+AGG | - | chr5_4:2043850-2043869 | None:intergenic | 25.0% |
| !!! | TGTCGTTATTTTATATGAAC+TGG | + | chr5_4:2044422-2044441 | Msa0829080:three_prime_UTR | 25.0% |
| ! | TGATTCAAAGAAAAGTGAAA+GGG | - | chr5_4:2044705-2044724 | None:intergenic | 25.0% |
| ! | ATGATTCAAAGAAAAGTGAA+AGG | - | chr5_4:2044706-2044725 | None:intergenic | 25.0% |
| !! | AGTTTAAGATTGAAAACAAC+GGG | + | chr5_4:2044865-2044884 | Msa0829080:intron | 25.0% |
| ! | AGAATCCTACACATTAAATA+TGG | - | chr5_4:2045156-2045175 | None:intergenic | 25.0% |
| ! | ATATTTAATGTGTAGGATTC+TGG | + | chr5_4:2045155-2045174 | Msa0829080:intron | 25.0% |
| ! | CGAAAAGTTGCTATATTTAT+AGG | - | chr5_4:2045280-2045299 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr5_4:2045686-2045705 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr5_4:2045685-2045704 | None:intergenic | 25.0% |
| !!! | GTAGTGATTGAAAGTTTTAT+AGG | - | chr5_4:2045340-2045359 | None:intergenic | 25.0% |
| !! | AAACTTTCAATCACTACTTT+TGG | + | chr5_4:2045343-2045362 | Msa0829080:intron | 25.0% |
| ! | TTATAGGAACTAAAAGTTGA+AGG | + | chr5_4:2045672-2045691 | Msa0829080:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr5_4:2045685-2045704 | Msa0829080:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr5_4:2045686-2045705 | Msa0829080:intron | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | + | chr5_4:2045854-2045873 | Msa0829080:intron | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | - | chr5_4:2045854-2045873 | None:intergenic | 25.0% |
| !!! | TTGCTTATATTTTAAAACGG+AGG | + | chr5_4:2045930-2045949 | Msa0829080:intron | 25.0% |
| !!! | TGCTTATATTTTAAAACGGA+GGG | + | chr5_4:2045931-2045950 | Msa0829080:intron | 25.0% |
| !! | GCATTTTATCAAGACTTTTT+AGG | + | chr5_4:2046254-2046273 | Msa0829080:intron | 25.0% |
| !!! | AGTTTTAAAAAAAGAGGGAA+AGG | + | chr5_4:2046378-2046397 | Msa0829080:intron | 25.0% |
| !! | AGACTTCTGATTTTTACTAA+AGG | - | chr5_4:2046706-2046725 | None:intergenic | 25.0% |
| !!! | TTAAAGAAGTGTTAAATTGC+AGG | + | chr5_4:2046787-2046806 | Msa0829080:intron | 25.0% |
| ! | AGTCATGATCTTAATATTAC+TGG | - | chr5_4:2046881-2046900 | None:intergenic | 25.0% |
| ! | TAAAAAATATTGGACAGCAA+TGG | + | chr5_4:2046944-2046963 | Msa0829080:intron | 25.0% |
| ! | AATGGTTTATATATTCGCAA+TGG | + | chr5_4:2046962-2046981 | Msa0829080:intron | 25.0% |
| ! | GAATTTGAGAAATATCATAC+AGG | - | chr5_4:2047140-2047159 | None:intergenic | 25.0% |
| !! | TTCTTTTCTTTTCTTTTGAC+AGG | + | chr5_4:2047346-2047365 | Msa0829080:intron | 25.0% |
| !! | TCTTTTCTTTTCTTTTGACA+GGG | + | chr5_4:2047347-2047366 | Msa0829080:intron | 25.0% |
| ! | TATTTCTTGTGATTCAAAGA+CGG | + | chr5_4:2047703-2047722 | Msa0829080:intron | 25.0% |
| ! | AAACTACAATAAAACCATCT+CGG | - | chr5_4:2048009-2048028 | None:intergenic | 25.0% |
| ! | ATTGTAGTTTCTATGAAGAA+TGG | + | chr5_4:2048019-2048038 | Msa0829080:intron | 25.0% |
| ! | ATAAAATAAGCTTTCAGGAT+TGG | - | chr5_4:2048104-2048123 | None:intergenic | 25.0% |
| ! | ACACAATAAAATAAGCTTTC+AGG | - | chr5_4:2048109-2048128 | None:intergenic | 25.0% |
| !!! | AATATTGATTTGAGATTGGA+CGG | - | chr5_4:2048140-2048159 | None:intergenic | 25.0% |
| !!! | CTTTTTCAAATCTACTTGAA+GGG | - | chr5_4:2048248-2048267 | None:intergenic | 25.0% |
| !!! | TCTTTTTCAAATCTACTTGA+AGG | - | chr5_4:2048249-2048268 | None:intergenic | 25.0% |
| GTGTATTCTTAACTCAAACT+TGG | - | chr5_4:2040512-2040531 | None:intergenic | 30.0% | |
| AACATAAAGTGGAGAAAGAA+TGG | - | chr5_4:2040545-2040564 | None:intergenic | 30.0% | |
| GAAAACAAAAATGAAGTAGC+TGG | - | chr5_4:2040600-2040619 | None:intergenic | 30.0% | |
| ! | TATGCAAACCAAGCTTTTAA+AGG | + | chr5_4:2040736-2040755 | Msa0829080:intron | 30.0% |
| ! | ATGCAAACCAAGCTTTTAAA+GGG | + | chr5_4:2040737-2040756 | Msa0829080:intron | 30.0% |
| !! | TTTTTCTCCCTTTAAAAGCT+TGG | - | chr5_4:2040747-2040766 | None:intergenic | 30.0% |
| TAGACAATGCAGGATATTTA+TGG | + | chr5_4:2040788-2040807 | Msa0829080:intron | 30.0% | |
| CCTGGAAAAATGAAAAGAAA+AGG | - | chr5_4:2040896-2040915 | None:intergenic | 30.0% | |
| !! | CCTTTTCTTTTCATTTTTCC+AGG | + | chr5_4:2040893-2040912 | Msa0829080:intron | 30.0% |
| ! | GAAATGGTGTAGTATTTTCT+AGG | + | chr5_4:2040930-2040949 | Msa0829080:CDS | 30.0% |
| TATTTATTGAAGCCATCAAG+TGG | - | chr5_4:2041031-2041050 | None:intergenic | 30.0% | |
| GGCTTCAATAAATACATAAG+TGG | + | chr5_4:2041037-2041056 | Msa0829080:CDS | 30.0% | |
| !!! | AGTTTTGAGCTTAGTTTATG+TGG | + | chr5_4:2041163-2041182 | Msa0829080:intron | 30.0% |
| !! | GTTTTGAGCTTAGTTTATGT+GGG | + | chr5_4:2041164-2041183 | Msa0829080:intron | 30.0% |
| ! | TTTTGAGCTTAGTTTATGTG+GGG | + | chr5_4:2041165-2041184 | Msa0829080:intron | 30.0% |
| ! | CGTGATTAACCATAATTTTC+AGG | + | chr5_4:2041349-2041368 | Msa0829080:intron | 30.0% |
| ! | GTTTAAATGAGCCTTTTAGT+TGG | + | chr5_4:2041386-2041405 | Msa0829080:intron | 30.0% |
| !! | TAGTGAGTGGACTTAATTTT+TGG | - | chr5_4:2041427-2041446 | None:intergenic | 30.0% |
| CAAAAAGGAAAAATAGTGAG+TGG | - | chr5_4:2041440-2041459 | None:intergenic | 30.0% | |
| ACTGACTGTATTCAACAAAA+AGG | - | chr5_4:2041455-2041474 | None:intergenic | 30.0% | |
| ! | TTTTTGTTGAATACAGTCAG+TGG | + | chr5_4:2041454-2041473 | Msa0829080:intron | 30.0% |
| GAACAATATGAGGAGAATAA+GGG | - | chr5_4:2041618-2041637 | None:intergenic | 30.0% | |
| TGAACAATATGAGGAGAATA+AGG | - | chr5_4:2041619-2041638 | None:intergenic | 30.0% | |
| ACATGAAACCAGAAAAACAA+AGG | - | chr5_4:2041676-2041695 | None:intergenic | 30.0% | |
| ATTACAAATTGCGTGTTAAC+AGG | + | chr5_4:2041710-2041729 | Msa0829080:intron | 30.0% | |
| ATATCTGTTTGAACATTAGC+GGG | - | chr5_4:2041901-2041920 | None:intergenic | 30.0% | |
| TGTTCAAACAGATATTGATG+CGG | + | chr5_4:2041906-2041925 | Msa0829080:CDS | 30.0% | |
| ATTTCACTTACATGTACACA+AGG | - | chr5_4:2042313-2042332 | None:intergenic | 30.0% | |
| TTGTGTACATGTAAGTGAAA+TGG | + | chr5_4:2042312-2042331 | Msa0829080:intron | 30.0% | |
| GTAAAATGGTGCGTATAAAA+AGG | - | chr5_4:2042373-2042392 | None:intergenic | 30.0% | |
| TGAGAAAATGTGATGATAAG+AGG | - | chr5_4:2042440-2042459 | None:intergenic | 30.0% | |
| ! | TTTTGACATAAATTGCAGCT+TGG | + | chr5_4:2042467-2042486 | Msa0829080:intron | 30.0% |
| GGAACAAACCACATAATATA+AGG | - | chr5_4:2042524-2042543 | None:intergenic | 30.0% | |
| AAACTTACTTGTGGAGAATA+AGG | - | chr5_4:2042545-2042564 | None:intergenic | 30.0% | |
| AACTTCTGAACTAGTTAACT+TGG | + | chr5_4:2042896-2042915 | Msa0829080:CDS | 30.0% | |
| TGAAAACACTATAATGCACT+TGG | + | chr5_4:2043115-2043134 | Msa0829080:intron | 30.0% | |
| ! | GAACATTTTAGACTTTCACA+TGG | - | chr5_4:2043151-2043170 | None:intergenic | 30.0% |
| ! | TTTCTGTTCTGCATCATTTT+TGG | + | chr5_4:2043172-2043191 | Msa0829080:intron | 30.0% |
| !! | TTCTGTTCTGCATCATTTTT+GGG | + | chr5_4:2043173-2043192 | Msa0829080:intron | 30.0% |
| ! | CTATCAAGAATCAAGGTTTT+TGG | + | chr5_4:2043198-2043217 | Msa0829080:intron | 30.0% |
| TTATATTAGAATGGGTGGTT+AGG | - | chr5_4:2043371-2043390 | None:intergenic | 30.0% | |
| TCCACATGAATTTCAGATAA+GGG | - | chr5_4:2043470-2043489 | None:intergenic | 30.0% | |
| ATCCACATGAATTTCAGATA+AGG | - | chr5_4:2043471-2043490 | None:intergenic | 30.0% | |
| GCAAAATTAATTCTACTCCA+TGG | - | chr5_4:2043495-2043514 | None:intergenic | 30.0% | |
| TTGGTTGAACAAAAGATTTG+AGG | - | chr5_4:2043582-2043601 | None:intergenic | 30.0% | |
| ! | TTATGTATTAGCGTGTGTTT+TGG | - | chr5_4:2043685-2043704 | None:intergenic | 30.0% |
| AGCGGATATTTGGTTATAAA+AGG | - | chr5_4:2043854-2043873 | None:intergenic | 30.0% | |
| ! | TTTTATAACCAAATATCCGC+TGG | + | chr5_4:2043853-2043872 | Msa0829080:CDS | 30.0% |
| ATATACAATGAACATTGTCC+TGG | + | chr5_4:2043964-2043983 | Msa0829080:CDS | 30.0% | |
| ! | CTTCATGTTTGTTCTTTTGT+GGG | + | chr5_4:2044500-2044519 | Msa0829080:intron | 30.0% |
| GCTCAAAATTCCAAAATCTA+TGG | - | chr5_4:2044540-2044559 | None:intergenic | 30.0% | |
| AAAGGGTAAACACTCATAAT+AGG | - | chr5_4:2044688-2044707 | None:intergenic | 30.0% | |
| CATCTCCATATTTAATGTGT+AGG | + | chr5_4:2045148-2045167 | Msa0829080:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr5_4:2045324-2045343 | None:intergenic | 30.0% | |
| !! | TATTCATCCGGTTTTTAAGA+TGG | + | chr5_4:2046048-2046067 | Msa0829080:intron | 30.0% |
| AGAAAAGCCATCTTAAAAAC+CGG | - | chr5_4:2046058-2046077 | None:intergenic | 30.0% | |
| !! | ATTTGGGGGAACTTTAAAAT+TGG | - | chr5_4:2046434-2046453 | None:intergenic | 30.0% |
| !!! | ATTTTAAAGTTCCCCCAAAT+TGG | + | chr5_4:2046434-2046453 | Msa0829080:intron | 30.0% |
| !!! | TTTTAAAGTTCCCCCAAATT+GGG | + | chr5_4:2046435-2046454 | Msa0829080:intron | 30.0% |
| AAACCAACAAAGAAAGAAGA+TGG | - | chr5_4:2046566-2046585 | None:intergenic | 30.0% | |
| ATTAAGATCATGACTCTTCT+AGG | + | chr5_4:2046886-2046905 | Msa0829080:intron | 30.0% | |
| TTAAGATCATGACTCTTCTA+GGG | + | chr5_4:2046887-2046906 | Msa0829080:intron | 30.0% | |
| AAGAAAAGAAAGAATGTCAG+CGG | - | chr5_4:2047336-2047355 | None:intergenic | 30.0% | |
| ATTATGCCTCTAGATTTGAT+GGG | - | chr5_4:2047835-2047854 | None:intergenic | 30.0% | |
| AATTATGCCTCTAGATTTGA+TGG | - | chr5_4:2047836-2047855 | None:intergenic | 30.0% | |
| !! | ATATTGATTTGAGATTGGAC+GGG | - | chr5_4:2048139-2048158 | None:intergenic | 30.0% |
| !! | ATCTACTTGAAGGGTATTTA+AGG | - | chr5_4:2048239-2048258 | None:intergenic | 30.0% |
| AAATAGAGCAATCTCATGAT+GGG | - | chr5_4:2048480-2048499 | None:intergenic | 30.0% | |
| !!! | GAGAAAGAATGGTTTTGTTG+TGG | - | chr5_4:2040534-2040553 | None:intergenic | 35.0% |
| AAAGTAAATGCAAGAGAGAG+AGG | - | chr5_4:2040698-2040717 | None:intergenic | 35.0% | |
| ! | TTTTCCAGGGAAAGAAAATG+AGG | + | chr5_4:2040907-2040926 | Msa0829080:intron | 35.0% |
| TTTCCAGGGAAAGAAAATGA+GGG | + | chr5_4:2040908-2040927 | Msa0829080:intron | 35.0% | |
| ! | TAGGTTTGATGTATTTGCTG+CGG | + | chr5_4:2040949-2040968 | Msa0829080:CDS | 35.0% |
| AGAAGAAAAGATCCACTTGA+TGG | + | chr5_4:2041016-2041035 | Msa0829080:CDS | 35.0% | |
| ATATCAGTGACCGTCATTAT+TGG | + | chr5_4:2041065-2041084 | Msa0829080:CDS | 35.0% | |
| TATCAGTGACCGTCATTATT+GGG | + | chr5_4:2041066-2041085 | Msa0829080:CDS | 35.0% | |
| GGTTAATAAGTGTAGACAAC+TGG | - | chr5_4:2041318-2041337 | None:intergenic | 35.0% | |
| GTTAATCACGTCCAAAATCA+TGG | - | chr5_4:2041339-2041358 | None:intergenic | 35.0% | |
| GACAGAAGTAACAAACAATG+AGG | - | chr5_4:2041550-2041569 | None:intergenic | 35.0% | |
| TGAAGAATAACCATAAGGCT+CGG | - | chr5_4:2041579-2041598 | None:intergenic | 35.0% | |
| AAATTGCGTGTTAACAGGAT+TGG | + | chr5_4:2041715-2041734 | Msa0829080:intron | 35.0% | |
| !! | ATGCTAGTATTGACGTTTCT+TGG | + | chr5_4:2042138-2042157 | Msa0829080:CDS | 35.0% |
| ATATTGGATCCACTCATTCA+TGG | - | chr5_4:2042790-2042809 | None:intergenic | 35.0% | |
| CTGTATTTGCAGTAGGATAT+TGG | - | chr5_4:2042806-2042825 | None:intergenic | 35.0% | |
| CATTCAATTATGTACCTGTG+TGG | - | chr5_4:2043084-2043103 | None:intergenic | 35.0% | |
| !! | TCTGTTCTGCATCATTTTTG+GGG | + | chr5_4:2043174-2043193 | Msa0829080:intron | 35.0% |
| TAGCACTCTTCAAAAGATTG+AGG | - | chr5_4:2043424-2043443 | None:intergenic | 35.0% | |
| ACATGAATTTCAGATAAGGG+TGG | - | chr5_4:2043467-2043486 | None:intergenic | 35.0% | |
| ! | ACCCTTATCTGAAATTCATG+TGG | + | chr5_4:2043466-2043485 | Msa0829080:intron | 35.0% |
| TTGAGGCTAAAAATCAACCA+AGG | - | chr5_4:2043565-2043584 | None:intergenic | 35.0% | |
| CATTTATTCCAGCGGATATT+TGG | - | chr5_4:2043864-2043883 | None:intergenic | 35.0% | |
| ATATCCGCTGGAATAAATGT+TGG | + | chr5_4:2043865-2043884 | Msa0829080:CDS | 35.0% | |
| GTTACCAACATTTATTCCAG+CGG | - | chr5_4:2043872-2043891 | None:intergenic | 35.0% | |
| CGATGGGGCATAATTATATA+AGG | - | chr5_4:2043896-2043915 | None:intergenic | 35.0% | |
| TGTGAATGTTTCTCGAACAA+AGG | - | chr5_4:2043941-2043960 | None:intergenic | 35.0% | |
| ! | TGATGTTCTCCTTGATCTTT+TGG | + | chr5_4:2044043-2044062 | Msa0829080:CDS | 35.0% |
| ! | GATGTTCTCCTTGATCTTTT+GGG | + | chr5_4:2044044-2044063 | Msa0829080:CDS | 35.0% |
| ! | ATGTTCTCCTTGATCTTTTG+GGG | + | chr5_4:2044045-2044064 | Msa0829080:CDS | 35.0% |
| TATATCCTTGTCACCTTTCA+GGG | - | chr5_4:2044276-2044295 | None:intergenic | 35.0% | |
| ATATATCCTTGTCACCTTTC+AGG | - | chr5_4:2044277-2044296 | None:intergenic | 35.0% | |
| ! | GCTTCATGTTTGTTCTTTTG+TGG | + | chr5_4:2044499-2044518 | Msa0829080:intron | 35.0% |
| CTTGTGTGCTTGATTTCTAT+TGG | - | chr5_4:2044595-2044614 | None:intergenic | 35.0% | |
| TTAAGATTGAAAACAACGGG+AGG | + | chr5_4:2044868-2044887 | Msa0829080:intron | 35.0% | |
| AGATTGACAGAAGATGAGAA+AGG | + | chr5_4:2044968-2044987 | Msa0829080:intron | 35.0% | |
| GAGGGACTAAAATGAAAAGT+TGG | + | chr5_4:2045704-2045723 | Msa0829080:intron | 35.0% | |
| !!! | TGCTTATATTTTGAGACGGA+GGG | - | chr5_4:2045816-2045835 | None:intergenic | 35.0% |
| !!! | TTGCTTATATTTTGAGACGG+AGG | - | chr5_4:2045817-2045836 | None:intergenic | 35.0% |
| ! | AAAAAGAGGGAAAGGTTTTG+AGG | + | chr5_4:2046386-2046405 | Msa0829080:intron | 35.0% |
| !! | AAAAGAGGGAAAGGTTTTGA+GGG | + | chr5_4:2046387-2046406 | Msa0829080:intron | 35.0% |
| ! | TTTAAAGTTCCCCCAAATTG+GGG | + | chr5_4:2046436-2046455 | Msa0829080:intron | 35.0% |
| CAACAAAGAAAGAAGATGGA+GGG | - | chr5_4:2046562-2046581 | None:intergenic | 35.0% | |
| TTCTTTAACTCCCAAACAAG+TGG | + | chr5_4:2046584-2046603 | Msa0829080:intron | 35.0% | |
| AATCACGTAGTAGGAATGTT+TGG | - | chr5_4:2046729-2046748 | None:intergenic | 35.0% | |
| CACTTCTTTAATATAGCAGC+TGG | - | chr5_4:2046778-2046797 | None:intergenic | 35.0% | |
| ! | GAAGTGTTAAATTGCAGGAA+AGG | + | chr5_4:2046792-2046811 | Msa0829080:intron | 35.0% |
| !! | ACTCTTCTAGGGTTTAAGTA+TGG | + | chr5_4:2046898-2046917 | Msa0829080:intron | 35.0% |
| CAGAAACTACACATAAGATG+TGG | + | chr5_4:2047626-2047645 | Msa0829080:intron | 35.0% | |
| AGTTGTTCCCACTATTGATA+GGG | - | chr5_4:2047655-2047674 | None:intergenic | 35.0% | |
| AAGTTGTTCCCACTATTGAT+AGG | - | chr5_4:2047656-2047675 | None:intergenic | 35.0% | |
| GTAGTTTCTATGAAGAATGG+AGG | + | chr5_4:2048022-2048041 | Msa0829080:intron | 35.0% | |
| !! | ACTTGAAGGGTATTTAAGGA+TGG | - | chr5_4:2048235-2048254 | None:intergenic | 35.0% |
| CACTTTAGTACTCTCAAGTT+TGG | + | chr5_4:2048273-2048292 | Msa0829080:intron | 35.0% | |
| TTAGTACTCTCAAGTTTGGT+TGG | + | chr5_4:2048277-2048296 | Msa0829080:intron | 35.0% | |
| CAAATAGAGCAATCTCATGA+TGG | - | chr5_4:2048481-2048500 | None:intergenic | 35.0% | |
| AAAGGGATTATGTTTGAGCT+AGG | - | chr5_4:2048530-2048549 | None:intergenic | 35.0% | |
| TAACTCAAACTTGGTACCAC+TGG | - | chr5_4:2040503-2040522 | None:intergenic | 40.0% | |
| AGTGGAAGAGTGACATAGTA+AGG | - | chr5_4:2040638-2040657 | None:intergenic | 40.0% | |
| TTGTGACAAGGAAGAAGAAG+TGG | - | chr5_4:2040656-2040675 | None:intergenic | 40.0% | |
| ! | TTTCCCTCATTTTCTTTCCC+TGG | - | chr5_4:2040914-2040933 | None:intergenic | 40.0% |
| GGGAAAGAAAATGAGGGAAA+TGG | + | chr5_4:2040914-2040933 | Msa0829080:intron | 40.0% | |
| AGGTTACAGCCCAATAATGA+CGG | - | chr5_4:2041078-2041097 | None:intergenic | 40.0% | |
| TATTGAGCAAGGGTTGAAAG+AGG | - | chr5_4:2041098-2041117 | None:intergenic | 40.0% | |
| CTTTCGCAACGAATTGTTAC+CGG | + | chr5_4:2041237-2041256 | Msa0829080:intron | 40.0% | |
| GGATGTGCAGTGCTATATAT+TGG | + | chr5_4:2041736-2041755 | Msa0829080:CDS | 40.0% | |
| GCAGTGCTATATATTGGACA+AGG | + | chr5_4:2041742-2041761 | Msa0829080:CDS | 40.0% | |
| AACATCGACGTTGCAATATG+TGG | + | chr5_4:2041783-2041802 | Msa0829080:CDS | 40.0% | |
| ACAGATATCAATGCTTCTGC+TGG | + | chr5_4:2041934-2041953 | Msa0829080:CDS | 40.0% | |
| CAGATATCAATGCTTCTGCT+GGG | + | chr5_4:2041935-2041954 | Msa0829080:CDS | 40.0% | |
| GAATATTGTGAGCCTGATAC+AGG | + | chr5_4:2042085-2042104 | Msa0829080:intron | 40.0% | |
| !! | CTGACTTGTTGCTGTTATTG+AGG | + | chr5_4:2042229-2042248 | Msa0829080:intron | 40.0% |
| TACGATCGCTGAGTGTAAAA+TGG | - | chr5_4:2042387-2042406 | None:intergenic | 40.0% | |
| ACTGGCACCCTTATATTATG+TGG | + | chr5_4:2042513-2042532 | Msa0829080:CDS | 40.0% | |
| AGCTAAGGGAAACTTACTTG+TGG | - | chr5_4:2042554-2042573 | None:intergenic | 40.0% | |
| GTTGCTCATAGAGAACAATG+TGG | + | chr5_4:2042620-2042639 | Msa0829080:intron | 40.0% | |
| TAGAGAACAATGTGGTAGCA+AGG | + | chr5_4:2042628-2042647 | Msa0829080:intron | 40.0% | |
| TGCTGTCACACTATCAAAAG+TGG | - | chr5_4:2042754-2042773 | None:intergenic | 40.0% | |
| CAACAATGTTTCTTGTGCTG+TGG | - | chr5_4:2042862-2042881 | None:intergenic | 40.0% | |
| TAGTACAGCGGCGTAAAATT+GGG | - | chr5_4:2042963-2042982 | None:intergenic | 40.0% | |
| CATTGTCTATCTGTCATGTC+AGG | - | chr5_4:2043032-2043051 | None:intergenic | 40.0% | |
| ACAGATAGACAATGTGACTC+TGG | + | chr5_4:2043038-2043057 | Msa0829080:CDS | 40.0% | |
| TTGGGGTCTATCAAGAATCA+AGG | + | chr5_4:2043191-2043210 | Msa0829080:intron | 40.0% | |
| TGAAATTCATGTGGATCCCA+TGG | + | chr5_4:2043475-2043494 | Msa0829080:intron | 40.0% | |
| ! | ATATCTCTGATGGTGAAACC+TGG | - | chr5_4:2043804-2043823 | None:intergenic | 40.0% |
| ATGAACATTGTCCTGGTCTA+CGG | + | chr5_4:2043971-2043990 | Msa0829080:CDS | 40.0% | |
| TTACTATAATGCCGTAGACC+AGG | - | chr5_4:2043985-2044004 | None:intergenic | 40.0% | |
| ATACACACCCCAAAAGATCA+AGG | - | chr5_4:2044055-2044074 | None:intergenic | 40.0% | |
| !!! | TTGATCTTTTGGGGTGTGTA+TGG | + | chr5_4:2044054-2044073 | Msa0829080:CDS | 40.0% |
| AGTTCAAGTGCATGACTTGA+TGG | - | chr5_4:2044243-2044262 | None:intergenic | 40.0% | |
| TTGTCACCTTTCAGGGATAT+GGG | - | chr5_4:2044269-2044288 | None:intergenic | 40.0% | |
| TGAACTGGAAAAGGAGAATC+CGG | + | chr5_4:2044437-2044456 | Msa0829080:three_prime_UTR | 40.0% | |
| CTCGTGTCTGATTCTTTATC+CGG | - | chr5_4:2044459-2044478 | None:intergenic | 40.0% | |
| ! | ACACGATAGGCCATAGATTT+TGG | + | chr5_4:2044527-2044546 | Msa0829080:intron | 40.0% |
| GAAGATGAGAATTCGTGTGT+TGG | - | chr5_4:2044566-2044585 | None:intergenic | 40.0% | |
| AATTCATACCAGACACGACA+AGG | - | chr5_4:2044917-2044936 | None:intergenic | 40.0% | |
| TGGTGTGTAAGAAGACTCAA+AGG | + | chr5_4:2045074-2045093 | Msa0829080:intron | 40.0% | |
| GGTGTGTAAGAAGACTCAAA+GGG | + | chr5_4:2045075-2045094 | Msa0829080:intron | 40.0% | |
| ACTGAATGAATCCGCCATTT+AGG | + | chr5_4:2045772-2045791 | Msa0829080:intron | 40.0% | |
| !! | TTTAGGCTTTGTTTGCGAGT+TGG | + | chr5_4:2046271-2046290 | Msa0829080:intron | 40.0% |
| !! | TTAGGCTTTGTTTGCGAGTT+GGG | + | chr5_4:2046272-2046291 | Msa0829080:intron | 40.0% |
| !! | TTGTTTGCGAGTTGGGTTTT+AGG | + | chr5_4:2046279-2046298 | Msa0829080:intron | 40.0% |
| !! | TTTAGGCTTTGTTTGCGAGT+TGG | + | chr5_4:2046271-2046290 | Msa0829080:intron | 40.0% |
| !! | TTAGGCTTTGTTTGCGAGTT+GGG | + | chr5_4:2046272-2046291 | Msa0829080:intron | 40.0% |
| !! | TTTGTTTGCGAGTTGGGTTT+TGG | + | chr5_4:2046278-2046297 | Msa0829080:intron | 40.0% |
| !!! | AAAGAGGGAAAGGTTTTGAG+GGG | + | chr5_4:2046388-2046407 | Msa0829080:intron | 40.0% |
| !!! | AGGTTTTGAGGGGTTTTGAA+TGG | + | chr5_4:2046398-2046417 | Msa0829080:intron | 40.0% |
| TTAAAGTTCCCCCAAATTGG+GGG | + | chr5_4:2046437-2046456 | Msa0829080:intron | 40.0% | |
| CCAACAAAGAAAGAAGATGG+AGG | - | chr5_4:2046563-2046582 | None:intergenic | 40.0% | |
| CCTCCATCTTCTTTCTTTGT+TGG | + | chr5_4:2046560-2046579 | Msa0829080:intron | 40.0% | |
| GGAAAGTCTTCCACTTGTTT+GGG | - | chr5_4:2046597-2046616 | None:intergenic | 40.0% | |
| !!! | CTTTGTTTGCGAGTTTTGAG+AGG | - | chr5_4:2046683-2046702 | None:intergenic | 40.0% |
| ACATTCCTACTACGTGATTG+CGG | + | chr5_4:2046730-2046749 | Msa0829080:intron | 40.0% | |
| TATAGCAGCTGGATTATCTG+CGG | - | chr5_4:2046767-2046786 | None:intergenic | 40.0% | |
| ! | GCATGTTATTTGTACCGAGA+TGG | + | chr5_4:2047992-2048011 | Msa0829080:intron | 40.0% |
| ! | TTTGTGGTGGTGTGATTTGT+GGG | - | chr5_4:2048410-2048429 | None:intergenic | 40.0% |
| ! | ATCAACCAGCTAAGCTTTTC+CGG | + | chr5_4:2048503-2048522 | Msa0829080:intron | 40.0% |
| GATTATGTTTGAGCTAGGAC+CGG | - | chr5_4:2048525-2048544 | None:intergenic | 40.0% | |
| CAAACAGTGAGTGTGTGTGT+GGG | - | chr5_4:2040473-2040492 | None:intergenic | 45.0% | |
| AACTTGGTACCACTGGCAAA+TGG | - | chr5_4:2040496-2040515 | None:intergenic | 45.0% | |
| TCCTTGTCACAACTCACTTC+AGG | + | chr5_4:2040664-2040683 | Msa0829080:CDS | 45.0% | |
| ACCTGAAGTGAGTTGTGACA+AGG | - | chr5_4:2040668-2040687 | None:intergenic | 45.0% | |
| GGAAGTGGTGAGTTCTCATA+TGG | - | chr5_4:2040977-2040996 | None:intergenic | 45.0% | |
| ! | CTAGTTCTCTCTGCAGCTAA+GGG | - | chr5_4:2040998-2041017 | None:intergenic | 45.0% |
| !! | TCTAGTTCTCTCTGCAGCTA+AGG | - | chr5_4:2040999-2041018 | None:intergenic | 45.0% |
| ACTGCTGCAATGCTGAATAC+AGG | - | chr5_4:2041494-2041513 | None:intergenic | 45.0% | |
| TATTCAGCATTGCAGCAGTC+TGG | + | chr5_4:2041495-2041514 | Msa0829080:CDS | 45.0% | |
| !! | ATTGCAGCAGTCTGGTTCTT+AGG | + | chr5_4:2041503-2041522 | Msa0829080:CDS | 45.0% |
| TGTCGTAAAACCGAGCCTTA+TGG | + | chr5_4:2041566-2041585 | Msa0829080:CDS | 45.0% | |
| ! | GTATCAAGCTGATTCTGCTG+TGG | + | chr5_4:2041807-2041826 | Msa0829080:CDS | 45.0% |
| TTACCTTGCTCAAGCTAAGC+TGG | + | chr5_4:2041852-2041871 | Msa0829080:CDS | 45.0% | |
| TATTGTGAGCCTGATACAGG+AGG | + | chr5_4:2042088-2042107 | Msa0829080:intron | 45.0% | |
| ! | AATTGCAGCTTGGTAATCGC+AGG | + | chr5_4:2042477-2042496 | Msa0829080:intron | 45.0% |
| GCAGGATGGTTTCTTGTTAC+TGG | + | chr5_4:2042495-2042514 | Msa0829080:CDS | 45.0% | |
| CATGTGTAGCCATGAATGAG+TGG | + | chr5_4:2042778-2042797 | Msa0829080:CDS | 45.0% | |
| TCGAGAGCTGTATTTGCAGT+AGG | - | chr5_4:2042813-2042832 | None:intergenic | 45.0% | |
| AGTACAGCGGCGTAAAATTG+GGG | - | chr5_4:2042962-2042981 | None:intergenic | 45.0% | |
| GTAGTACAGCGGCGTAAAAT+TGG | - | chr5_4:2042964-2042983 | None:intergenic | 45.0% | |
| CCGGATTGATTGTAGTACAG+CGG | - | chr5_4:2042975-2042994 | None:intergenic | 45.0% | |
| CCGCTGTACTACAATCAATC+CGG | + | chr5_4:2042972-2042991 | Msa0829080:CDS | 45.0% | |
| GTCTATCTGTCATGTCAGGA+CGG | - | chr5_4:2043028-2043047 | None:intergenic | 45.0% | |
| AATCAGTTTCCGTGTGATGC+AGG | + | chr5_4:2043759-2043778 | Msa0829080:intron | 45.0% | |
| TTCCGTGTGATGCAGGTATA+TGG | + | chr5_4:2043766-2043785 | Msa0829080:intron | 45.0% | |
| TCCGTGTGATGCAGGTATAT+GGG | + | chr5_4:2043767-2043786 | Msa0829080:intron | 45.0% | |
| TCCCATATACCTGCATCACA+CGG | - | chr5_4:2043771-2043790 | None:intergenic | 45.0% | |
| ATATGGGAACTTTGTGTGCC+AGG | + | chr5_4:2043783-2043802 | Msa0829080:CDS | 45.0% | |
| TGGGTCATGCATATCTCTGA+TGG | - | chr5_4:2043814-2043833 | None:intergenic | 45.0% | |
| TCAGAGATATGCATGACCCA+AGG | + | chr5_4:2043814-2043833 | Msa0829080:CDS | 45.0% | |
| TTGTAGCTCAACAAGCGATG+GGG | - | chr5_4:2043911-2043930 | None:intergenic | 45.0% | |
| CTTGTAGCTCAACAAGCGAT+GGG | - | chr5_4:2043912-2043931 | None:intergenic | 45.0% | |
| TCTTGTAGCTCAACAAGCGA+TGG | - | chr5_4:2043913-2043932 | None:intergenic | 45.0% | |
| ! | GGTGTAAGTGCAAGTCTTGT+TGG | - | chr5_4:2044222-2044241 | None:intergenic | 45.0% |
| ACTTAGCCCATATCCCTGAA+AGG | + | chr5_4:2044260-2044279 | Msa0829080:exon | 45.0% | |
| CTTGTCACCTTTCAGGGATA+TGG | - | chr5_4:2044270-2044289 | None:intergenic | 45.0% | |
| CATATCCCTGAAAGGTGACA+AGG | + | chr5_4:2044268-2044287 | Msa0829080:exon | 45.0% | |
| AATCTATGGCCTATCGTGTG+AGG | - | chr5_4:2044526-2044545 | None:intergenic | 45.0% | |
| GATGTCTTCAAAGTCCGTTC+TGG | + | chr5_4:2044804-2044823 | Msa0829080:intron | 45.0% | |
| GACTGAGTGTTCAACCAGAA+CGG | - | chr5_4:2044821-2044840 | None:intergenic | 45.0% | |
| CATTAGGAGGGCTACCTAAA+TGG | - | chr5_4:2045789-2045808 | None:intergenic | 45.0% | |
| !!! | TTTGCGAGTTGGGTTTTGGA+TGG | + | chr5_4:2046307-2046326 | Msa0829080:intron | 45.0% |
| !!! | TTGCGAGTTGGGTTTTGGAT+GGG | + | chr5_4:2046308-2046327 | Msa0829080:intron | 45.0% |
| TAAAGTTCCCCCAAATTGGG+GGG | + | chr5_4:2046438-2046457 | Msa0829080:intron | 45.0% | |
| GGGAAAGTCTTCCACTTGTT+TGG | - | chr5_4:2046598-2046617 | None:intergenic | 45.0% | |
| !!! | TTTGCGAGTTTTGAGAGGAG+GGG | - | chr5_4:2046678-2046697 | None:intergenic | 45.0% |
| !!! | GTTTGCGAGTTTTGAGAGGA+GGG | - | chr5_4:2046679-2046698 | None:intergenic | 45.0% |
| !!! | TGTTTGCGAGTTTTGAGAGG+AGG | - | chr5_4:2046680-2046699 | None:intergenic | 45.0% |
| CATTCCTACTACGTGATTGC+GGG | + | chr5_4:2046731-2046750 | Msa0829080:intron | 45.0% | |
| AAATCCCGCAATCACGTAGT+AGG | - | chr5_4:2046738-2046757 | None:intergenic | 45.0% | |
| TGTTCCCACTATTGATAGGG+TGG | - | chr5_4:2047652-2047671 | None:intergenic | 45.0% | |
| ATGCCTCTAGATTTGATGGG+TGG | - | chr5_4:2047832-2047851 | None:intergenic | 45.0% | |
| ! | TGATTTGTGGGGATGGAGTT+TGG | - | chr5_4:2048398-2048417 | None:intergenic | 45.0% |
| ! | TTGTGGTGGTGTGATTTGTG+GGG | - | chr5_4:2048409-2048428 | None:intergenic | 45.0% |
| ! | CTTTGTGGTGGTGTGATTTG+TGG | - | chr5_4:2048411-2048430 | None:intergenic | 45.0% |
| ACTCACGAGAAACTTTGTGG+TGG | - | chr5_4:2048423-2048442 | None:intergenic | 45.0% | |
| TGTGTGTGCATCAACACTGA+TGG | - | chr5_4:2048451-2048470 | None:intergenic | 45.0% | |
| !! | GAGCAATCTCATGATGGGTT+GGG | - | chr5_4:2048475-2048494 | None:intergenic | 45.0% |
| !! | AGAGCAATCTCATGATGGGT+TGG | - | chr5_4:2048476-2048495 | None:intergenic | 45.0% |
| !!! | TTTATTTTATAAATGAATTT+TGG | + | chr5_4:2041196-2041215 | Msa0829080:intron | 5.0% |
| !!! | TATTTTAATTATATTAGAAT+GGG | - | chr5_4:2043379-2043398 | None:intergenic | 5.0% |
| !!! | ATATTTTAATTATATTAGAA+TGG | - | chr5_4:2043380-2043399 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+GGG | - | chr5_4:2045447-2045466 | None:intergenic | 5.0% |
| !!! | TAAAAAATTCTAATTTTTTT+TGG | - | chr5_4:2045448-2045467 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+TGG | - | chr5_4:2045501-2045520 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAAATTTTTTT+TGG | + | chr5_4:2045540-2045559 | Msa0829080:intron | 5.0% |
| !!! | AAAAATTCTAAATTTTTTTT+GGG | + | chr5_4:2045541-2045560 | Msa0829080:intron | 5.0% |
| !!! | AAAAAAATTCTTATATTTTA+CGG | + | chr5_4:2046118-2046137 | Msa0829080:intron | 5.0% |
| !!! | TATAAAAAACAATTTATTTT+TGG | - | chr5_4:2046166-2046185 | None:intergenic | 5.0% |
| !!! | GATTTTAATTTTTTTTTTTT+TGG | + | chr5_4:2046829-2046848 | Msa0829080:intron | 5.0% |
| !!! | TTTAATTCAAAATAATATTT+TGG | + | chr5_4:2047382-2047401 | Msa0829080:intron | 5.0% |
| TGTGTGTGTGGGAGAGAAAG+AGG | - | chr5_4:2040462-2040481 | None:intergenic | 50.0% | |
| GCAAACAGTGAGTGTGTGTG+TGG | - | chr5_4:2040474-2040493 | None:intergenic | 50.0% | |
| ! | CACTGTTTGCCATTTGCCAG+TGG | + | chr5_4:2040484-2040503 | Msa0829080:five_prime_UTR | 50.0% |
| !! | GCAGTCTGGTTCTTAGGCTT+TGG | + | chr5_4:2041509-2041528 | Msa0829080:CDS | 50.0% |
| ! | CAACCAGCTTAGCTTGAGCA+AGG | - | chr5_4:2041858-2041877 | None:intergenic | 50.0% |
| CTTGCTCAAGCTAAGCTGGT+TGG | + | chr5_4:2041856-2041875 | Msa0829080:CDS | 50.0% | |
| GTACAGCGGCGTAAAATTGG+GGG | - | chr5_4:2042961-2042980 | None:intergenic | 50.0% | |
| TCTGTCATGTCAGGACGGAA+CGG | - | chr5_4:2043023-2043042 | None:intergenic | 50.0% | |
| ! | TTAGGTCCGACTCGATCAAG+GGG | - | chr5_4:2043353-2043372 | None:intergenic | 50.0% |
| ! | GTTAGGTCCGACTCGATCAA+GGG | - | chr5_4:2043354-2043373 | None:intergenic | 50.0% |
| ! | TGGAGAGAGACAAGGAGTGT+TGG | - | chr5_4:2043447-2043466 | None:intergenic | 50.0% |
| GATAAGGGTGGAGAGAGACA+AGG | - | chr5_4:2043455-2043474 | None:intergenic | 50.0% | |
| GGTAGGGGTTAAACGTCCTT+GGG | - | chr5_4:2043833-2043852 | None:intergenic | 50.0% | |
| AGGTAGGGGTTAAACGTCCT+TGG | - | chr5_4:2043834-2043853 | None:intergenic | 50.0% | |
| !! | AGTGCAAGTCTTGTTGGTGC+AGG | - | chr5_4:2044216-2044235 | None:intergenic | 50.0% |
| ! | TTTTGTGGGCCTCACACGAT+AGG | + | chr5_4:2044514-2044533 | Msa0829080:intron | 50.0% |
| TAGGAGGGCTACCTAAATGG+CGG | - | chr5_4:2045786-2045805 | None:intergenic | 50.0% | |
| ! | ACGGAGGGAGTACATTAGGA+GGG | - | chr5_4:2045801-2045820 | None:intergenic | 50.0% |
| ! | TGAGACGGAGGGAGTACATT+AGG | - | chr5_4:2045805-2045824 | None:intergenic | 50.0% |
| !!! | GAGTTGGGTTTTGGATGGGA+GGG | + | chr5_4:2046312-2046331 | Msa0829080:intron | 50.0% |
| !!! | AGTTGGGTTTTGGATGGGAG+GGG | + | chr5_4:2046313-2046332 | Msa0829080:intron | 50.0% |
| GGAAGGAAAGGCTTATGGAG+AGG | + | chr5_4:2046339-2046358 | Msa0829080:intron | 50.0% | |
| CACAAAACCCCCCAATTTGG+GGG | - | chr5_4:2046448-2046467 | None:intergenic | 50.0% | |
| CCACAAAACCCCCCAATTTG+GGG | - | chr5_4:2046449-2046468 | None:intergenic | 50.0% | |
| CCCACAAAACCCCCCAATTT+GGG | - | chr5_4:2046450-2046469 | None:intergenic | 50.0% | |
| !! | CCCAAATTGGGGGGTTTTGT+GGG | + | chr5_4:2046447-2046466 | Msa0829080:intron | 50.0% |
| !! | CCAAATTGGGGGGTTTTGTG+GGG | + | chr5_4:2046448-2046467 | Msa0829080:intron | 50.0% |
| TTTGAGAGGAGGGGAAGGAA+AGG | - | chr5_4:2046669-2046688 | None:intergenic | 50.0% | |
| TGTGGCCACCCTATCAATAG+TGG | + | chr5_4:2047644-2047663 | Msa0829080:intron | 50.0% | |
| GTGGCCACCCTATCAATAGT+GGG | + | chr5_4:2047645-2047664 | Msa0829080:intron | 50.0% | |
| GGTCCACCCATCAAATCTAG+AGG | + | chr5_4:2047826-2047845 | Msa0829080:intron | 50.0% | |
| CGCACTCACGAGAAACTTTG+TGG | - | chr5_4:2048426-2048445 | None:intergenic | 50.0% | |
| TAGGACCGGAAAAGCTTAGC+TGG | - | chr5_4:2048511-2048530 | None:intergenic | 50.0% | |
| CTCTCTGCAGCTAAGGGAAG+TGG | - | chr5_4:2040992-2041011 | None:intergenic | 55.0% | |
| ! | GCAGCTTGGTAATCGCAGGA+TGG | + | chr5_4:2042481-2042500 | Msa0829080:intron | 55.0% |
| CGACGATATACTGCCCTGTG+TGG | + | chr5_4:2042830-2042849 | Msa0829080:CDS | 55.0% | |
| !! | GCTGTGGCTTTGTCCACACA+GGG | - | chr5_4:2042846-2042865 | None:intergenic | 55.0% |
| !! | TGCTGTGGCTTTGTCCACAC+AGG | - | chr5_4:2042847-2042866 | None:intergenic | 55.0% |
| TCGCAGAGGAGTGGCATCAA+GGG | - | chr5_4:2042999-2043018 | None:intergenic | 55.0% | |
| ATCGCAGAGGAGTGGCATCA+AGG | - | chr5_4:2043000-2043019 | None:intergenic | 55.0% | |
| GAACCTAAGCAACGCCACAC+AGG | + | chr5_4:2043067-2043086 | Msa0829080:CDS | 55.0% | |
| GTACCTGTGTGGCGTTGCTT+AGG | - | chr5_4:2043073-2043092 | None:intergenic | 55.0% | |
| TGGTCCAGCTCACGATGACT+CGG | - | chr5_4:2043304-2043323 | None:intergenic | 55.0% | |
| ! | ACCACTCAACCTGCGGATTG+AGG | + | chr5_4:2043320-2043339 | Msa0829080:intron | 55.0% |
| ! | ACCTCAATCCGCAGGTTGAG+TGG | - | chr5_4:2043324-2043343 | None:intergenic | 55.0% |
| ! | ACTCAACCTGCGGATTGAGG+TGG | + | chr5_4:2043323-2043342 | Msa0829080:intron | 55.0% |
| ! | CTCAACCTGCGGATTGAGGT+GGG | + | chr5_4:2043324-2043343 | Msa0829080:intron | 55.0% |
| GGGTTACCCCTTGATCGAGT+CGG | + | chr5_4:2043344-2043363 | Msa0829080:intron | 55.0% | |
| ! | GGTTAGGTCCGACTCGATCA+AGG | - | chr5_4:2043355-2043374 | None:intergenic | 55.0% |
| GGGGTGTGTATGGAAGAGAG+CGG | + | chr5_4:2044064-2044083 | Msa0829080:CDS | 55.0% | |
| GTGTGTATGGAAGAGAGCGG+AGG | + | chr5_4:2044067-2044086 | Msa0829080:CDS | 55.0% | |
| GGTGTAGGTGCACGTCTTGT+TGG | - | chr5_4:2044156-2044175 | None:intergenic | 55.0% | |
| AGTGCAGGTGCACGTCTTGT+TGG | - | chr5_4:2044189-2044208 | None:intergenic | 55.0% | |
| ! | GACGGAGGGAGTACATTAGG+AGG | - | chr5_4:2045802-2045821 | None:intergenic | 55.0% |
| !!! | CGAGTTGGGTTTTGGATGGG+AGG | + | chr5_4:2046311-2046330 | Msa0829080:intron | 55.0% |
| GGAGGGGAAGGAAAGGCTTA+TGG | + | chr5_4:2046334-2046353 | Msa0829080:intron | 55.0% | |
| ! | CCCCAAATTGGGGGGTTTTG+TGG | + | chr5_4:2046446-2046465 | Msa0829080:intron | 55.0% |
| CCCCACAAAACCCCCCAATT+TGG | - | chr5_4:2046451-2046470 | None:intergenic | 55.0% | |
| GGAAGGGAAGGGAGAAAGGA+GGG | - | chr5_4:2046618-2046637 | None:intergenic | 55.0% | |
| AGGAAGGGAAGGGAGAAAGG+AGG | - | chr5_4:2046619-2046638 | None:intergenic | 55.0% | |
| GGAAGGAAGGGAAGGGAGAA+AGG | - | chr5_4:2046622-2046641 | None:intergenic | 55.0% | |
| GGAAAGGCTTAGGAGGGGAA+GGG | - | chr5_4:2046653-2046672 | None:intergenic | 55.0% | |
| AGGAAAGGCTTAGGAGGGGA+AGG | - | chr5_4:2046654-2046673 | None:intergenic | 55.0% | |
| GGGAAGGAAAGGCTTAGGAG+GGG | - | chr5_4:2046658-2046677 | None:intergenic | 55.0% | |
| GGGGAAGGAAAGGCTTAGGA+GGG | - | chr5_4:2046659-2046678 | None:intergenic | 55.0% | |
| AGGGGAAGGAAAGGCTTAGG+AGG | - | chr5_4:2046660-2046679 | None:intergenic | 55.0% | |
| AGGAGGGGAAGGAAAGGCTT+AGG | - | chr5_4:2046663-2046682 | None:intergenic | 55.0% | |
| !!! | CGAGTTTTGAGAGGAGGGGA+AGG | - | chr5_4:2046674-2046693 | None:intergenic | 55.0% |
| ! | GGTGGTGTGATTTGTGGGGA+TGG | - | chr5_4:2048405-2048424 | None:intergenic | 55.0% |
| GTGAGCCTGATACAGGAGGC+TGG | + | chr5_4:2042092-2042111 | Msa0829080:intron | 60.0% | |
| GAGGAGTGGCATCAAGGGAC+CGG | - | chr5_4:2042994-2043013 | None:intergenic | 60.0% | |
| GTCCAGCTCACGATGACTCG+GGG | - | chr5_4:2043302-2043321 | None:intergenic | 60.0% | |
| GGTCCAGCTCACGATGACTC+GGG | - | chr5_4:2043303-2043322 | None:intergenic | 60.0% | |
| GAGCTGGACCACTCAACCTG+CGG | + | chr5_4:2043313-2043332 | Msa0829080:intron | 60.0% | |
| GGTAACCCACCTCAATCCGC+AGG | - | chr5_4:2043332-2043351 | None:intergenic | 60.0% | |
| GTTGGTGCAGGAGCTCGTGT+AGG | - | chr5_4:2044138-2044157 | None:intergenic | 60.0% | |
| ! | GGTGCACGTCTTGTTGGTGC+AGG | - | chr5_4:2044150-2044169 | None:intergenic | 60.0% |
| GTTGGTGCAGGTGCAGGTGT+AGG | - | chr5_4:2044171-2044190 | None:intergenic | 60.0% | |
| ! | CGTCTTGTTGGTGCAGGTGC+AGG | - | chr5_4:2044177-2044196 | None:intergenic | 60.0% |
| ! | GGTGCACGTCTTGTTGGTGC+AGG | - | chr5_4:2044150-2044169 | None:intergenic | 60.0% |
| GTTGGTGCAGGTGCAAGTGC+AGG | - | chr5_4:2044204-2044223 | None:intergenic | 60.0% | |
| !!! | TGGGTTTTGGATGGGAGGGG+AGG | + | chr5_4:2046316-2046335 | Msa0829080:intron | 60.0% |
| !!! | GGGTTTTGGATGGGAGGGGA+GGG | + | chr5_4:2046317-2046336 | Msa0829080:intron | 60.0% |
| !!! | GGTTTTGGATGGGAGGGGAG+GGG | + | chr5_4:2046318-2046337 | Msa0829080:intron | 60.0% |
| AGGGAGGGGAAGGAAGGGAA+GGG | - | chr5_4:2046629-2046648 | None:intergenic | 60.0% | |
| AAGGGAGGGGAAGGAAGGGA+AGG | - | chr5_4:2046630-2046649 | None:intergenic | 60.0% | |
| AGGGAAGGGAGGGGAAGGAA+GGG | - | chr5_4:2046634-2046653 | None:intergenic | 60.0% | |
| AAGGGAAGGGAGGGGAAGGA+AGG | - | chr5_4:2046635-2046654 | None:intergenic | 60.0% | |
| TAGGAGGGGAAGGGAAGGGA+GGG | - | chr5_4:2046644-2046663 | None:intergenic | 60.0% | |
| TTAGGAGGGGAAGGGAAGGG+AGG | - | chr5_4:2046645-2046664 | None:intergenic | 60.0% | |
| GGCTTAGGAGGGGAAGGGAA+GGG | - | chr5_4:2046648-2046667 | None:intergenic | 60.0% | |
| AGGCTTAGGAGGGGAAGGGA+AGG | - | chr5_4:2046649-2046668 | None:intergenic | 60.0% | |
| GAGCGCCAGCCTCCTGTATC+AGG | - | chr5_4:2042100-2042119 | None:intergenic | 65.0% | |
| CGGAACGGATCGCAGAGGAG+TGG | - | chr5_4:2043008-2043027 | None:intergenic | 65.0% | |
| CAGGACGGAACGGATCGCAG+AGG | - | chr5_4:2043013-2043032 | None:intergenic | 65.0% | |
| GACCCCGAGTCATCGTGAGC+TGG | + | chr5_4:2043297-2043316 | Msa0829080:intron | 65.0% | |
| CGTCGACGCCTTGTCGTGTC+TGG | + | chr5_4:2044906-2044925 | Msa0829080:intron | 65.0% | |
| TTGGATGGGAGGGGAGGGGA+AGG | + | chr5_4:2046322-2046341 | Msa0829080:intron | 65.0% | |
| TGGGAGGGGAGGGGAAGGAA+AGG | + | chr5_4:2046327-2046346 | Msa0829080:intron | 65.0% | |
| AGGAGGGGAAGGGAAGGGAG+GGG | - | chr5_4:2046643-2046662 | None:intergenic | 65.0% | |
| GGGGAAGGGAAGGGAGGGGA+AGG | - | chr5_4:2046639-2046658 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 2040437 | 2048557 | 2040437 | ID=Msa0829080;Name=Msa0829080 |
| chr5_4 | mRNA | 2040437 | 2048557 | 2040437 | ID=Msa0829080-mRNA-1;Parent=Msa0829080;Name=Msa0829080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=146|1|1|1|0.88|0.8|10|275|578 |
| chr5_4 | exon | 2040437 | 2040685 | 2040437 | ID=Msa0829080-mRNA-1:exon:568;Parent=Msa0829080-mRNA-1 |
| chr5_4 | exon | 2040915 | 2041090 | 2040915 | ID=Msa0829080-mRNA-1:exon:569;Parent=Msa0829080-mRNA-1 |
| chr5_4 | exon | 2041470 | 2041651 | 2041470 | ID=Msa0829080-mRNA-1:exon:570;Parent=Msa0829080-mRNA-1 |
| chr5_4 | exon | 2041732 | 2042016 | 2041732 | ID=Msa0829080-mRNA-1:exon:571;Parent=Msa0829080-mRNA-1 |
| chr5_4 | exon | 2042107 | 2042165 | 2042107 | ID=Msa0829080-mRNA-1:exon:572;Parent=Msa0829080-mRNA-1 |
| chr5_4 | exon | 2042285 | 2042321 | 2042285 | ID=Msa0829080-mRNA-1:exon:573;Parent=Msa0829080-mRNA-1 |
| chr5_4 | exon | 2042485 | 2042556 | 2042485 | ID=Msa0829080-mRNA-1:exon:574;Parent=Msa0829080-mRNA-1 |
| chr5_4 | exon | 2042764 | 2043088 | 2042764 | ID=Msa0829080-mRNA-1:exon:575;Parent=Msa0829080-mRNA-1 |
| chr5_4 | exon | 2043781 | 2044517 | 2043781 | ID=Msa0829080-mRNA-1:exon:576;Parent=Msa0829080-mRNA-1 |
| chr5_4 | exon | 2048522 | 2048557 | 2048522 | ID=Msa0829080-mRNA-1:exon:577;Parent=Msa0829080-mRNA-1 |
| chr5_4 | five_prime_UTR | 2040437 | 2040582 | 2040437 | ID=Msa0829080-mRNA-1:five_prime_utr;Parent=Msa0829080-mRNA-1 |
| chr5_4 | CDS | 2040583 | 2040685 | 2040583 | ID=Msa0829080-mRNA-1:cds;Parent=Msa0829080-mRNA-1 |
| chr5_4 | CDS | 2040915 | 2041090 | 2040915 | ID=Msa0829080-mRNA-1:cds;Parent=Msa0829080-mRNA-1 |
| chr5_4 | CDS | 2041470 | 2041651 | 2041470 | ID=Msa0829080-mRNA-1:cds;Parent=Msa0829080-mRNA-1 |
| chr5_4 | CDS | 2041732 | 2042016 | 2041732 | ID=Msa0829080-mRNA-1:cds;Parent=Msa0829080-mRNA-1 |
| chr5_4 | CDS | 2042107 | 2042165 | 2042107 | ID=Msa0829080-mRNA-1:cds;Parent=Msa0829080-mRNA-1 |
| chr5_4 | CDS | 2042285 | 2042321 | 2042285 | ID=Msa0829080-mRNA-1:cds;Parent=Msa0829080-mRNA-1 |
| chr5_4 | CDS | 2042485 | 2042556 | 2042485 | ID=Msa0829080-mRNA-1:cds;Parent=Msa0829080-mRNA-1 |
| chr5_4 | CDS | 2042764 | 2043088 | 2042764 | ID=Msa0829080-mRNA-1:cds;Parent=Msa0829080-mRNA-1 |
| chr5_4 | CDS | 2043781 | 2044278 | 2043781 | ID=Msa0829080-mRNA-1:cds;Parent=Msa0829080-mRNA-1 |
| chr5_4 | three_prime_UTR | 2044279 | 2044517 | 2044279 | ID=Msa0829080-mRNA-1:three_prime_utr;Parent=Msa0829080-mRNA-1 |
| chr5_4 | three_prime_UTR | 2048522 | 2048557 | 2048522 | ID=Msa0829080-mRNA-1:three_prime_utr;Parent=Msa0829080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
