Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464050 | XP_003601044.1 | 96.867 | 415 | 10 | 2 | 1 | 415 | 1 | 412 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464050 | sp|Q93ZH0|LYM1_ARATH | 67.609 | 389 | 122 | 2 | 6 | 390 | 9 | 397 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464050 | G7J302 | 96.867 | 415 | 10 | 2 | 1 | 415 | 1 | 412 | 0.0 | 793 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052150 | Msa0464050 | 0.801619 | 8.266067e-49 | -8.615850e-47 |
| Msa0084990 | Msa0464050 | 0.804687 | 1.916491e-49 | -8.615850e-47 |
| Msa0092950 | Msa0464050 | 0.818281 | 2.126970e-52 | -8.615850e-47 |
| Msa0109730 | Msa0464050 | 0.836839 | 7.394182e-57 | -8.615850e-47 |
| Msa0170070 | Msa0464050 | 0.813721 | 2.217340e-51 | -8.615850e-47 |
| Msa0204970 | Msa0464050 | 0.804191 | 2.432099e-49 | -8.615850e-47 |
| Msa0383940 | Msa0464050 | 0.802680 | 5.002060e-49 | -8.615850e-47 |
| Msa0412130 | Msa0464050 | 0.803536 | 3.327187e-49 | -8.615850e-47 |
| Msa0420430 | Msa0464050 | 0.814213 | 1.727099e-51 | -8.615850e-47 |
| Msa0432690 | Msa0464050 | 0.822754 | 1.999951e-53 | -8.615850e-47 |
| Msa0434360 | Msa0464050 | 0.805590 | 1.240263e-49 | -8.615850e-47 |
| Msa0461550 | Msa0464050 | 0.828105 | 1.081571e-54 | -8.615850e-47 |
| Msa0464050 | Msa0466520 | 0.823424 | 1.395754e-53 | -8.615850e-47 |
| Msa0464050 | Msa0476790 | 0.815675 | 8.185946e-52 | -8.615850e-47 |
| Msa0464050 | Msa0507820 | 0.803025 | 4.244886e-49 | -8.615850e-47 |
| Msa0464050 | Msa0513080 | 0.803282 | 3.755044e-49 | -8.615850e-47 |
| Msa0464050 | Msa0521170 | 0.801136 | 1.038164e-48 | -8.615850e-47 |
| Msa0464050 | Msa0521320 | 0.812544 | 4.019914e-51 | -8.615850e-47 |
| Msa0464050 | Msa0527850 | 0.832319 | 1.011633e-55 | -8.615850e-47 |
| Msa0464050 | Msa0544410 | 0.811284 | 7.559956e-51 | -8.615850e-47 |
| Msa0464050 | Msa0557850 | 0.866671 | 2.403632e-65 | -8.615850e-47 |
| Msa0464050 | Msa0571350 | 0.800193 | 1.616251e-48 | -8.615850e-47 |
| Msa0464050 | Msa0576330 | 0.803617 | 3.200242e-49 | -8.615850e-47 |
| Msa0464050 | Msa0582460 | 0.847972 | 8.244485e-60 | -8.615850e-47 |
| Msa0464050 | Msa0586200 | 0.819809 | 9.555229e-53 | -8.615850e-47 |
| Msa0464050 | Msa0612520 | 0.829403 | 5.249993e-55 | -8.615850e-47 |
| Msa0464050 | Msa0653160 | 0.851699 | 7.486699e-61 | -8.615850e-47 |
| Msa0464050 | Msa0660090 | 0.802858 | 4.596256e-49 | -8.615850e-47 |
| Msa0464050 | Msa0660260 | 0.816414 | 5.598817e-52 | -8.615850e-47 |
| Msa0464050 | Msa0663290 | 0.850947 | 1.221533e-60 | -8.615850e-47 |
| Msa0464050 | Msa0664070 | 0.852613 | 4.114836e-61 | -8.615850e-47 |
| Msa0464050 | Msa0688620 | 0.841905 | 3.578230e-58 | -8.615850e-47 |
| Msa0464050 | Msa0690320 | 0.813066 | 3.089523e-51 | -8.615850e-47 |
| Msa0464050 | Msa0695560 | 0.817085 | 3.958644e-52 | -8.615850e-47 |
| Msa0464050 | Msa0749190 | 0.844311 | 8.179410e-59 | -8.615850e-47 |
| Msa0464050 | Msa0750520 | 0.843912 | 1.046741e-58 | -8.615850e-47 |
| Msa0464050 | Msa0778600 | 0.837941 | 3.862107e-57 | -8.615850e-47 |
| Msa0464050 | Msa0829080 | 0.807820 | 4.193328e-50 | -8.615850e-47 |
| Msa0464050 | Msa0900090 | 0.809509 | 1.826773e-50 | -8.615850e-47 |
| Msa0464050 | Msa0926760 | 0.817247 | 3.640069e-52 | -8.615850e-47 |
| Msa0464050 | Msa0930950 | -0.809124 | 2.209869e-50 | -8.615850e-47 |
| Msa0464050 | Msa0965470 | 0.840899 | 6.585313e-58 | -8.615850e-47 |
| Msa0464050 | Msa0978980 | 0.804730 | 1.877041e-49 | -8.615850e-47 |
| Msa0464050 | Msa1008850 | 0.803687 | 3.094839e-49 | -8.615850e-47 |
| Msa0464050 | Msa1033420 | 0.825631 | 4.219735e-54 | -8.615850e-47 |
| Msa0464050 | Msa1071410 | 0.843182 | 1.639589e-58 | -8.615850e-47 |
| Msa0464050 | Msa1073060 | 0.821901 | 3.154768e-53 | -8.615850e-47 |
| Msa0464050 | Msa1085680 | 0.801552 | 8.534115e-49 | -8.615850e-47 |
| Msa0464050 | Msa1130780 | 0.808537 | 2.949350e-50 | -8.615850e-47 |
| Msa0464050 | Msa1144990 | 0.816806 | 4.573030e-52 | -8.615850e-47 |
| Msa0464050 | Msa1160780 | 0.815631 | 8.374319e-52 | -8.615850e-47 |
| Msa0464050 | Msa1183910 | 0.802875 | 4.558954e-49 | -8.615850e-47 |
| Msa0464050 | Msa1278030 | 0.804470 | 2.126946e-49 | -8.615850e-47 |
| Msa0464050 | Msa1297070 | 0.810665 | 1.029484e-50 | -8.615850e-47 |
| Msa0464050 | Msa1312240 | 0.801986 | 6.949030e-49 | -8.615850e-47 |
| Msa0464050 | Msa1341750 | 0.807015 | 6.212829e-50 | -8.615850e-47 |
| Msa0464050 | Msa1342810 | 0.803343 | 3.647640e-49 | -8.615850e-47 |
| Msa0464050 | Msa1344080 | -0.801122 | 1.045160e-48 | -8.615850e-47 |
| Msa0464050 | Msa1349850 | -0.816205 | 6.235920e-52 | -8.615850e-47 |
| Msa0464050 | Msa1362590 | 0.810256 | 1.261628e-50 | -8.615850e-47 |
| Msa0464050 | Msa1372030 | 0.814411 | 1.561953e-51 | -8.615850e-47 |
| Msa0464050 | Msa1381800 | 0.838157 | 3.398415e-57 | -8.615850e-47 |
| Msa0464050 | Msa1385570 | 0.812095 | 5.036300e-51 | -8.615850e-47 |
| Msa0464050 | Msa1389310 | 0.807445 | 5.036352e-50 | -8.615850e-47 |
| Msa0464050 | Msa1406720 | 0.816195 | 6.267045e-52 | -8.615850e-47 |
| Msa0464050 | Msa1417930 | 0.808894 | 2.474496e-50 | -8.615850e-47 |
| Msa0464050 | Msa1424370 | 0.803359 | 3.620570e-49 | -8.615850e-47 |
| Msa0241040 | Msa0464050 | 0.819255 | 1.278223e-52 | -8.615850e-47 |
| Msa0249870 | Msa0464050 | 0.807468 | 4.981673e-50 | -8.615850e-47 |
| Msa0260630 | Msa0464050 | 0.815768 | 7.805765e-52 | -8.615850e-47 |
| Msa0278840 | Msa0464050 | 0.824672 | 7.108894e-54 | -8.615850e-47 |
| Msa0281540 | Msa0464050 | 0.806138 | 9.512272e-50 | -8.615850e-47 |
| Msa0318620 | Msa0464050 | 0.821881 | 3.188841e-53 | -8.615850e-47 |
| Msa0320580 | Msa0464050 | 0.809479 | 1.854112e-50 | -8.615850e-47 |
| Msa0336520 | Msa0464050 | 0.800032 | 1.743479e-48 | -8.615850e-47 |
| Msa0342220 | Msa0464050 | 0.800496 | 1.402593e-48 | -8.615850e-47 |
| Msa0344110 | Msa0464050 | 0.811126 | 8.181271e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464050 | MtrunA17_Chr3g0114621 | 96.867 | 415 | 10 | 2 | 1 | 415 | 1 | 412 | 0.0 | 793 |
| Msa0464050 | MtrunA17_Chr4g0052691 | 32.653 | 294 | 179 | 11 | 31 | 313 | 40 | 325 | 5.88e-34 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464050 | AT1G21880.2 | 67.609 | 389 | 122 | 2 | 6 | 390 | 9 | 397 | 0.0 | 538 |
| Msa0464050 | AT1G21880.1 | 72.549 | 306 | 83 | 1 | 7 | 311 | 10 | 315 | 4.05e-165 | 466 |
| Msa0464050 | AT1G77630.1 | 64.638 | 345 | 119 | 2 | 1 | 343 | 1 | 344 | 2.28e-163 | 466 |
| Msa0464050 | AT2G17120.1 | 32.047 | 337 | 198 | 12 | 1 | 324 | 1 | 319 | 9.39e-39 | 143 |
Find 144 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAAAGATTCTGCTGATTT+TGG | 0.106349 | 3_3:+63630352 | Msa0464050:CDS |
| AATTAAACCCACCACAAAAT+TGG | 0.144145 | 3_3:-63631839 | None:intergenic |
| CTGGAAAACTATGGGATTTC+GGG | 0.147948 | 3_3:+63631935 | Msa0464050:three_prime_UTR |
| AAATGTTGGGTTTAGGGTTT+TGG | 0.163956 | 3_3:-63628803 | None:intergenic |
| GCCTGAGTACTTTAAGTTTC+GGG | 0.183153 | 3_3:-63630440 | None:intergenic |
| ACTTACGATGGTATTGTTAA+TGG | 0.220792 | 3_3:+63630830 | Msa0464050:CDS |
| AGAAACCAAACCACCGTAAA+TGG | 0.233685 | 3_3:-63629195 | None:intergenic |
| CCTATTAGTGGAATTTCTTC+TGG | 0.250006 | 3_3:+63631714 | Msa0464050:CDS |
| TGAAGGCACCACAGAGGATT+TGG | 0.255853 | 3_3:-63631667 | None:intergenic |
| CCAGAAGAAATTCCACTAAT+AGG | 0.262408 | 3_3:-63631714 | None:intergenic |
| TTGTTGAAATGTTGGGTTTA+GGG | 0.262525 | 3_3:-63628809 | None:intergenic |
| TCTGGAAAACTATGGGATTT+CGG | 0.263536 | 3_3:+63631934 | Msa0464050:three_prime_UTR |
| TCTATTGCTGATTCCATTTA+CGG | 0.271349 | 3_3:+63629182 | Msa0464050:CDS |
| TCTTTAACTGATTGTGAATC+TGG | 0.283431 | 3_3:+63631916 | Msa0464050:three_prime_UTR |
| TGCCTGAGTACTTTAAGTTT+CGG | 0.305714 | 3_3:-63630441 | None:intergenic |
| GCAAAACACCAAGTAATAAA+AGG | 0.307587 | 3_3:-63631975 | None:intergenic |
| ATCCAATGCTCTTGCGTAGA+TGG | 0.316785 | 3_3:+63629104 | Msa0464050:CDS |
| GTAATAGCATAACTTCCATT+AGG | 0.342017 | 3_3:-63630385 | None:intergenic |
| ATTGTTGAAATGTTGGGTTT+AGG | 0.351103 | 3_3:-63628810 | None:intergenic |
| CATCTAGGGTCAGTAATTCT+AGG | 0.355899 | 3_3:+63632012 | Msa0464050:three_prime_UTR |
| TCCTCTGTGGTGCCTTCAAC+AGG | 0.356949 | 3_3:+63631672 | Msa0464050:CDS |
| TAGAAATTTCAAGAAATTGA+TGG | 0.357395 | 3_3:+63632058 | Msa0464050:three_prime_UTR |
| AGAGAAATTGAAAGAGAAAA+GGG | 0.361470 | 3_3:-63628727 | None:intergenic |
| ACAGGATTTACTCCTGCATT+AGG | 0.364823 | 3_3:+63631690 | Msa0464050:CDS |
| GAGAGAAATTGAAAGAGAAA+AGG | 0.374022 | 3_3:-63628728 | None:intergenic |
| AAAAGGGAAGTAGTGGAAAC+AGG | 0.376793 | 3_3:-63628711 | None:intergenic |
| TGGATTACCAAGGGAATTAG+AGG | 0.380096 | 3_3:-63632128 | None:intergenic |
| TTTGGATTGCTTGTCCCTAA+TGG | 0.380603 | 3_3:+63630370 | Msa0464050:CDS |
| ATTCTTGCTATTCCTATTCC+AGG | 0.381712 | 3_3:+63629464 | Msa0464050:CDS |
| GTTAATGCTATGGGAACTAC+TGG | 0.385166 | 3_3:+63629425 | Msa0464050:CDS |
| TTGAAAGAGGGAAGAGAGTT+CGG | 0.386940 | 3_3:-63628982 | None:intergenic |
| TTCTGCATTGTTGAAATGTT+GGG | 0.392749 | 3_3:-63628816 | None:intergenic |
| CAGAAGAAATTCCACTAATA+GGG | 0.397850 | 3_3:-63631713 | None:intergenic |
| GAAGGCACCACAGAGGATTT+GGG | 0.408599 | 3_3:-63631666 | None:intergenic |
| TGATTCCATTTACGGTGGTT+TGG | 0.412509 | 3_3:+63629190 | Msa0464050:CDS |
| GTTCTGCATTGTTGAAATGT+TGG | 0.412651 | 3_3:-63628817 | None:intergenic |
| AAGAGAGTTCGGAGACTTTG+AGG | 0.415021 | 3_3:-63628971 | None:intergenic |
| ATTAAACCCACCACAAAATT+GGG | 0.419240 | 3_3:-63631838 | None:intergenic |
| GTCTTATGTTGTTCAGCCGT+TGG | 0.422705 | 3_3:+63629346 | Msa0464050:CDS |
| CCAAAATCAGCAGAATCTTT+CGG | 0.426265 | 3_3:-63630352 | None:intergenic |
| CTTACCTCTCGGCTGAACTC+TGG | 0.427833 | 3_3:-63632148 | None:intergenic |
| TGCTTCTGCCGCATGCTCCT+TGG | 0.430716 | 3_3:+63631737 | Msa0464050:CDS |
| AAAATGAAATTACCTGGAAT+AGG | 0.445173 | 3_3:-63629476 | None:intergenic |
| TTTGCAGTGAGGAGTGAGAT+TGG | 0.445188 | 3_3:-63629011 | None:intergenic |
| TAATAGCATAACTTCCATTA+GGG | 0.446734 | 3_3:-63630384 | None:intergenic |
| TGGGAAGATTACAATGCTAC+AGG | 0.447582 | 3_3:-63631819 | None:intergenic |
| TCCCTTCAGCCTCGATGTCC+AGG | 0.453460 | 3_3:+63630996 | Msa0464050:CDS |
| AGGATGTGGTGTTCAACGTC+AGG | 0.457861 | 3_3:-63629053 | None:intergenic |
| GGACATCGAGGCTGAAGGGA+TGG | 0.461392 | 3_3:-63630993 | None:intergenic |
| TTTCGGAAACTTTGATGCAC+AGG | 0.472926 | 3_3:-63630335 | None:intergenic |
| CTACGCAAGAGCATTGGATT+GGG | 0.474175 | 3_3:-63629100 | None:intergenic |
| TCTCTCTCAGGAAAAGGAAA+AGG | 0.474792 | 3_3:-63628768 | None:intergenic |
| ATTGTGAATCTGGAAAACTA+TGG | 0.477956 | 3_3:+63631926 | Msa0464050:three_prime_UTR |
| CACAAGTGTGAGTGTCAAAG+TGG | 0.484069 | 3_3:-63631772 | None:intergenic |
| GACATCGAGGCTGAAGGGAT+GGG | 0.484842 | 3_3:-63630992 | None:intergenic |
| TTCCATCTACGCAAGAGCAT+TGG | 0.489266 | 3_3:-63629106 | None:intergenic |
| AAATGATTCTGCAGGGTCGC+AGG | 0.490594 | 3_3:+63631539 | Msa0464050:intron |
| TTTAATTATGTCTTTGCCAC+GGG | 0.492338 | 3_3:+63631855 | Msa0464050:three_prime_UTR |
| CAAGAAACAGCTAGAGAAGC+TGG | 0.495279 | 3_3:-63630719 | None:intergenic |
| CCTGCATTAGGCCCTATTAG+TGG | 0.495717 | 3_3:+63631702 | Msa0464050:CDS |
| TCTACGCAAGAGCATTGGAT+TGG | 0.500578 | 3_3:-63629101 | None:intergenic |
| TTGCAGTGAGGAGTGAGATT+GGG | 0.505218 | 3_3:-63629010 | None:intergenic |
| TGACCAACGTCAAGAACATT+CGG | 0.510432 | 3_3:-63629254 | None:intergenic |
| ATAAACATACGTTGTTGCTA+TGG | 0.512893 | 3_3:-63630855 | None:intergenic |
| TTTGATGAATGTTAATGCTA+TGG | 0.513306 | 3_3:+63629415 | Msa0464050:CDS |
| GGAACTACTGGGATTTCTGC+TGG | 0.521612 | 3_3:+63629437 | Msa0464050:CDS |
| GAAAGAGAAAAGGGAAGTAG+TGG | 0.524615 | 3_3:-63628718 | None:intergenic |
| ACTGTAGGTGGGGCAATAAG+AGG | 0.525551 | 3_3:-63631570 | None:intergenic |
| GATTGGGTCGATTTGAAAGA+GGG | 0.526360 | 3_3:-63628994 | None:intergenic |
| TACTAGCAACTACAATAGAT+AGG | 0.526908 | 3_3:-63631882 | None:intergenic |
| CTCTCGGAACAACTGTAGGT+GGG | 0.529796 | 3_3:-63631581 | None:intergenic |
| AGATTGGGTCGATTTGAAAG+AGG | 0.531686 | 3_3:-63628995 | None:intergenic |
| AGTTGGTTGAAACGGATTTG+CGG | 0.534365 | 3_3:-63629130 | None:intergenic |
| GGAAGTTATGCTATTACAGC+AGG | 0.534448 | 3_3:+63630391 | Msa0464050:CDS |
| TCACTGTTAGACGGAACTGA+TGG | 0.535200 | 3_3:+63631636 | Msa0464050:CDS |
| CTAACAGTGATGATGGTGAC+GGG | 0.537300 | 3_3:-63631623 | None:intergenic |
| CTGTGTAGAGAGTGTAACCT+AGG | 0.539235 | 3_3:-63628947 | None:intergenic |
| GCAGGAGTAAATCCTGTTGA+AGG | 0.542272 | 3_3:-63631684 | None:intergenic |
| AGTGATGATGGTGACGGGGC+TGG | 0.543733 | 3_3:-63631618 | None:intergenic |
| ACATCGAGGCTGAAGGGATG+GGG | 0.543885 | 3_3:-63630991 | None:intergenic |
| TATCAACCCTCTAATTCCCT+TGG | 0.544649 | 3_3:+63632121 | Msa0464050:three_prime_UTR |
| GTTTAATTATGTCTTTGCCA+CGG | 0.547059 | 3_3:+63631854 | Msa0464050:three_prime_UTR |
| AAGAACAGCAATCTTATGCT+TGG | 0.548219 | 3_3:+63630758 | Msa0464050:CDS |
| TTGATGAATGTTAATGCTAT+GGG | 0.549988 | 3_3:+63629416 | Msa0464050:CDS |
| TTAAAACAAGTACAAGGAAG+AGG | 0.551314 | 3_3:-63629290 | None:intergenic |
| GTTCCGTCTAACAGTGATGA+TGG | 0.555050 | 3_3:-63631630 | None:intergenic |
| ACCTGGACATCGAGGCTGAA+GGG | 0.562410 | 3_3:-63630997 | None:intergenic |
| GTGAGTGTCAAAGTGGGTAA+TGG | 0.562630 | 3_3:-63631765 | None:intergenic |
| TCTCTCGGAACAACTGTAGG+TGG | 0.562704 | 3_3:-63631582 | None:intergenic |
| TTGTTGTGAAGAGTTTGAAG+TGG | 0.563302 | 3_3:-63628869 | None:intergenic |
| GATTCTCTCGGAACAACTGT+AGG | 0.565554 | 3_3:-63631585 | None:intergenic |
| CATGTGTCGGAGGTTGTGCA+TGG | 0.570050 | 3_3:-63628915 | None:intergenic |
| CACTGTGTGCAGTGTAGCTG+TGG | 0.570591 | 3_3:+63630415 | Msa0464050:CDS |
| GACACATGCAACTCTCTCCT+AGG | 0.572176 | 3_3:+63628930 | Msa0464050:CDS |
| CCTGAGTACTTTAAGTTTCG+GGG | 0.577517 | 3_3:-63630439 | None:intergenic |
| GGTGCAAACATTGATTCTCT+CGG | 0.577790 | 3_3:-63631597 | None:intergenic |
| TTGTGAATCTGGAAAACTAT+GGG | 0.578481 | 3_3:+63631927 | Msa0464050:three_prime_UTR |
| AGGGAATTAGAGGGTTGATA+CGG | 0.580593 | 3_3:-63632118 | None:intergenic |
| CCACTAATAGGGCCTAATGC+AGG | 0.590231 | 3_3:-63631702 | None:intergenic |
| GACCTGGACATCGAGGCTGA+AGG | 0.592508 | 3_3:-63630998 | None:intergenic |
| CACTGTTAGACGGAACTGAT+GGG | 0.592672 | 3_3:+63631637 | Msa0464050:CDS |
| ACATAAGACATATAAATCGC+GGG | 0.592677 | 3_3:-63629332 | None:intergenic |
| AACATAAGACATATAAATCG+CGG | 0.593436 | 3_3:-63629333 | None:intergenic |
| GTTTGAATAATATTGCTGCT+AGG | 0.594196 | 3_3:+63629372 | Msa0464050:CDS |
| TAGAGAAGCTAACTCTGTAA+CGG | 0.601846 | 3_3:+63629229 | Msa0464050:CDS |
| ATGAAAGAGTGTCAGAAGGA+CGG | 0.605160 | 3_3:-63629160 | None:intergenic |
| AATGTTACCGTGCAACAGAC+TGG | 0.607344 | 3_3:+63630782 | Msa0464050:CDS |
| TTATATGCATAGAATAGAAG+AGG | 0.608165 | 3_3:-63628679 | None:intergenic |
| GGATTACCAAGGGAATTAGA+GGG | 0.608658 | 3_3:-63632127 | None:intergenic |
| ACCGTGCAACAGACTGGTGG+TGG | 0.610548 | 3_3:+63630788 | Msa0464050:CDS |
| ACCACCACCAGTCTGTTGCA+CGG | 0.612127 | 3_3:-63630789 | None:intergenic |
| TCTCGGAACAACTGTAGGTG+GGG | 0.613496 | 3_3:-63631580 | None:intergenic |
| GTCAGGGTAAGAGATGTCAA+TGG | 0.617827 | 3_3:-63629036 | None:intergenic |
| GTGACTTCTTGCACTTACGA+TGG | 0.618130 | 3_3:+63630818 | Msa0464050:CDS |
| TCACCATCATCACTGTTAGA+CGG | 0.618411 | 3_3:+63631627 | Msa0464050:CDS |
| GAGAGAGTTGCATGTGTCGG+AGG | 0.625658 | 3_3:-63628925 | None:intergenic |
| ATTGCTGATTCCATTTACGG+TGG | 0.628452 | 3_3:+63629185 | Msa0464050:CDS |
| TCTAACAGTGATGATGGTGA+CGG | 0.628578 | 3_3:-63631624 | None:intergenic |
| TGGTTTCACCAAGGAGCATG+CGG | 0.631030 | 3_3:-63631745 | None:intergenic |
| TAGGAGAGAGTTGCATGTGT+CGG | 0.631053 | 3_3:-63628928 | None:intergenic |
| GAACCATTAAAACAAGTACA+AGG | 0.637923 | 3_3:-63629296 | None:intergenic |
| ATAGATGAAAGAGTGTCAGA+AGG | 0.641781 | 3_3:-63629164 | None:intergenic |
| GTAGGTGGGGCAATAAGAGG+AGG | 0.642569 | 3_3:-63631567 | None:intergenic |
| GGATGTGGTGTTCAACGTCA+GGG | 0.644081 | 3_3:-63629052 | None:intergenic |
| GCTGAACTCTGGATTACCAA+GGG | 0.644533 | 3_3:-63632137 | None:intergenic |
| GGCTGAACTCTGGATTACCA+AGG | 0.646567 | 3_3:-63632138 | None:intergenic |
| ATATTATTCAAACTATCCAA+CGG | 0.650589 | 3_3:-63629362 | None:intergenic |
| GATCCGAATGTTCTTGACGT+TGG | 0.650805 | 3_3:+63629251 | Msa0464050:CDS |
| AAATTTCAAGAAATTGATGG+TGG | 0.654031 | 3_3:+63632061 | Msa0464050:three_prime_UTR |
| ACAAGTGTGAGTGTCAAAGT+GGG | 0.665438 | 3_3:-63631771 | None:intergenic |
| ACAATAGATAGGAGCACCCG+TGG | 0.672332 | 3_3:-63631871 | None:intergenic |
| GGGAAGATTACAATGCTACA+GGG | 0.675818 | 3_3:-63631818 | None:intergenic |
| TAGGTGGGGCAATAAGAGGA+GGG | 0.677365 | 3_3:-63631566 | None:intergenic |
| TTAATGCTATGGGAACTACT+GGG | 0.687155 | 3_3:+63629426 | Msa0464050:CDS |
| GAACACTGACCTGGACATCG+AGG | 0.697290 | 3_3:-63631005 | None:intergenic |
| TACAAGGAAGAGGAACAACA+AGG | 0.700536 | 3_3:-63629280 | None:intergenic |
| TGATTACAAAGTGTGCACAA+TGG | 0.701513 | 3_3:-63632086 | None:intergenic |
| TCCTGTTGAAGGCACCACAG+AGG | 0.718699 | 3_3:-63631673 | None:intergenic |
| TGTCAATGGAGTTTGCAGTG+AGG | 0.721041 | 3_3:-63629022 | None:intergenic |
| GAGATCACCCAAATCCTCTG+TGG | 0.727132 | 3_3:+63631659 | Msa0464050:CDS |
| AGTGGGTAATGGTTTCACCA+AGG | 0.735083 | 3_3:-63631754 | None:intergenic |
| TAATCCAGAGTTCAGCCGAG+AGG | 0.735215 | 3_3:+63632144 | Msa0464050:three_prime_UTR |
| TAACAGTGATGATGGTGACG+GGG | 0.743170 | 3_3:-63631622 | None:intergenic |
| GTTACCGTGCAACAGACTGG+TGG | 0.766856 | 3_3:+63630785 | Msa0464050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTTCTATAATTTAATTT+AGG | + | chr3_3:63629543-63629562 | Msa0464050:intron | 10.0% |
| !!! | ACTTTCTATAATTTAATTTA+GGG | + | chr3_3:63629544-63629563 | Msa0464050:intron | 10.0% |
| !! | CTTATATATATGTATATATA+GGG | + | chr3_3:63631034-63631053 | Msa0464050:intron | 10.0% |
| !! | CCTATATATACATATATATA+AGG | - | chr3_3:63631036-63631055 | None:intergenic | 15.0% |
| !! | CCTTATATATATGTATATAT+AGG | + | chr3_3:63631033-63631052 | Msa0464050:intron | 15.0% |
| !! | ATATTATTCAAACTATCCAA+CGG | - | chr3_3:63629365-63629384 | None:intergenic | 20.0% |
| !! | CAAGTAGATAATTTCAAATA+AGG | - | chr3_3:63629583-63629602 | None:intergenic | 20.0% |
| !! | CTATAAGCTAGTATAATTTA+AGG | - | chr3_3:63629678-63629697 | None:intergenic | 20.0% |
| !!! | CTTAAATTATACTAGCTTAT+AGG | + | chr3_3:63629676-63629695 | Msa0464050:intron | 20.0% |
| !! | ATAAACAAACACAATTTGAA+AGG | - | chr3_3:63629969-63629988 | None:intergenic | 20.0% |
| !! | TTTGTACTTTCTGTAATTTA+GGG | + | chr3_3:63630002-63630021 | Msa0464050:intron | 20.0% |
| !! | ATTTATGTATAAAGAGAGTA+AGG | - | chr3_3:63630495-63630514 | None:intergenic | 20.0% |
| !!! | ATAAATCTAGATTCTTTTGT+AGG | + | chr3_3:63630509-63630528 | Msa0464050:intron | 20.0% |
| !!! | TAAATCTAGATTCTTTTGTA+GGG | + | chr3_3:63630510-63630529 | Msa0464050:intron | 20.0% |
| !! | TATACATATATATAAGGATG+CGG | - | chr3_3:63631030-63631049 | None:intergenic | 20.0% |
| !! | TGTAATTCATATTTAAGTGA+TGG | + | chr3_3:63631425-63631444 | Msa0464050:intron | 20.0% |
| !! | ATACTTATTGTTATGTTTCA+TGG | - | chr3_3:63631457-63631476 | None:intergenic | 20.0% |
| !! | TAGAAATTTCAAGAAATTGA+TGG | + | chr3_3:63632058-63632077 | Msa0464050:three_prime_UTR | 20.0% |
| ! | TAAAAAAACATGAAGAACAC+TGG | - | chr3_3:63628654-63628673 | None:intergenic | 25.0% |
| ! | TTATATGCATAGAATAGAAG+AGG | - | chr3_3:63628682-63628701 | None:intergenic | 25.0% |
| ! | AGAGAAATTGAAAGAGAAAA+GGG | - | chr3_3:63628730-63628749 | None:intergenic | 25.0% |
| !!! | TGTTTTAATGGTTCTGATAA+TGG | + | chr3_3:63629305-63629324 | Msa0464050:CDS | 25.0% |
| !!! | GTTTTAATGGTTCTGATAAT+GGG | + | chr3_3:63629306-63629325 | Msa0464050:CDS | 25.0% |
| ! | AACATAAGACATATAAATCG+CGG | - | chr3_3:63629336-63629355 | None:intergenic | 25.0% |
| ! | TTTGATGAATGTTAATGCTA+TGG | + | chr3_3:63629415-63629434 | Msa0464050:CDS | 25.0% |
| ! | TTGATGAATGTTAATGCTAT+GGG | + | chr3_3:63629416-63629435 | Msa0464050:CDS | 25.0% |
| ! | AAAATGAAATTACCTGGAAT+AGG | - | chr3_3:63629479-63629498 | None:intergenic | 25.0% |
| !! | AATTTAATTTAGGGTCTGTT+TGG | + | chr3_3:63629553-63629572 | Msa0464050:intron | 25.0% |
| ! | TGTCTACTTACTAACAAAAT+TGG | + | chr3_3:63629841-63629860 | Msa0464050:intron | 25.0% |
| ! | ACACAATTTGAAAGGTTTAA+TGG | - | chr3_3:63629961-63629980 | None:intergenic | 25.0% |
| ! | CTTTGTACTTTCTGTAATTT+AGG | + | chr3_3:63630001-63630020 | Msa0464050:intron | 25.0% |
| !!! | TGTTTGTATTAACTTGTTTG+AGG | + | chr3_3:63630027-63630046 | Msa0464050:intron | 25.0% |
| !!! | GTTGTTTTCATTAGTTATCT+TGG | - | chr3_3:63630122-63630141 | None:intergenic | 25.0% |
| !! | TATCCAAATAGTGTCTTATT+CGG | + | chr3_3:63630256-63630275 | Msa0464050:intron | 25.0% |
| ! | TAATAGCATAACTTCCATTA+GGG | - | chr3_3:63630387-63630406 | None:intergenic | 25.0% |
| !!! | AAAATGTTGGTGTTAATTCA+GGG | + | chr3_3:63630559-63630578 | Msa0464050:intron | 25.0% |
| ! | AATATTCTCAATCTCAGAAA+TGG | - | chr3_3:63630649-63630668 | None:intergenic | 25.0% |
| ! | ATATCTAGTGGTACTTAATA+TGG | - | chr3_3:63631188-63631207 | None:intergenic | 25.0% |
| !! | ATTCATATTTAAGTGATGGA+AGG | + | chr3_3:63631429-63631448 | Msa0464050:intron | 25.0% |
| !!! | TGTATTTTAAATGATTCTGC+AGG | + | chr3_3:63631531-63631550 | Msa0464050:intron | 25.0% |
| !!! | GTATTTTAAATGATTCTGCA+GGG | + | chr3_3:63631532-63631551 | Msa0464050:intron | 25.0% |
| !! | TGAACTATTTTGTTCATCTA+GGG | + | chr3_3:63631998-63632017 | Msa0464050:three_prime_UTR | 25.0% |
| ! | AAATTTCAAGAAATTGATGG+TGG | + | chr3_3:63632061-63632080 | Msa0464050:three_prime_UTR | 25.0% |
| GAGAGAAATTGAAAGAGAAA+AGG | - | chr3_3:63628731-63628750 | None:intergenic | 30.0% | |
| TTGTTGAAATGTTGGGTTTA+GGG | - | chr3_3:63628812-63628831 | None:intergenic | 30.0% | |
| ATTGTTGAAATGTTGGGTTT+AGG | - | chr3_3:63628813-63628832 | None:intergenic | 30.0% | |
| TTCTGCATTGTTGAAATGTT+GGG | - | chr3_3:63628819-63628838 | None:intergenic | 30.0% | |
| !!! | TGGTTCTATTGTTGATTTTG+AGG | - | chr3_3:63628898-63628917 | None:intergenic | 30.0% |
| !!! | TTTTGAGGTAGAGTTTTGAA+GGG | - | chr3_3:63629079-63629098 | None:intergenic | 30.0% |
| !!! | ATTTTGAGGTAGAGTTTTGA+AGG | - | chr3_3:63629080-63629099 | None:intergenic | 30.0% |
| ! | GATTTTGTAGTTGGTTGAAA+CGG | - | chr3_3:63629141-63629160 | None:intergenic | 30.0% |
| !! | TCTATTGCTGATTCCATTTA+CGG | + | chr3_3:63629182-63629201 | Msa0464050:CDS | 30.0% |
| TTAAAACAAGTACAAGGAAG+AGG | - | chr3_3:63629293-63629312 | None:intergenic | 30.0% | |
| !!! | CTTCCTTGTACTTGTTTTAA+TGG | + | chr3_3:63629293-63629312 | Msa0464050:CDS | 30.0% |
| GAACCATTAAAACAAGTACA+AGG | - | chr3_3:63629299-63629318 | None:intergenic | 30.0% | |
| ACATAAGACATATAAATCGC+GGG | - | chr3_3:63629335-63629354 | None:intergenic | 30.0% | |
| GTTTGAATAATATTGCTGCT+AGG | + | chr3_3:63629372-63629391 | Msa0464050:CDS | 30.0% | |
| AGCATGAAAATGAAATTACC+TGG | - | chr3_3:63629485-63629504 | None:intergenic | 30.0% | |
| ! | AGTGTTTGAGTTTATGGAAA+CGG | + | chr3_3:63629618-63629637 | Msa0464050:intron | 30.0% |
| ! | GGAAAATAGTTTGATTTCGT+CGG | + | chr3_3:63629697-63629716 | Msa0464050:intron | 30.0% |
| TACACACAATTGCAAAGTTT+AGG | - | chr3_3:63629785-63629804 | None:intergenic | 30.0% | |
| ! | AAGTTTCATGTGATGTTTTG+TGG | + | chr3_3:63629806-63629825 | Msa0464050:intron | 30.0% |
| TTAGTTATCTTGGAAGCTTA+TGG | - | chr3_3:63630112-63630131 | None:intergenic | 30.0% | |
| GAAAACAACTTGTAGCTTAT+AGG | + | chr3_3:63630133-63630152 | Msa0464050:intron | 30.0% | |
| GTAATAGCATAACTTCCATT+AGG | - | chr3_3:63630388-63630407 | None:intergenic | 30.0% | |
| TGTATAAAGAGAGTAAGGTA+TGG | - | chr3_3:63630490-63630509 | None:intergenic | 30.0% | |
| !!! | TGTAGGGTCATTTTGTTTTA+AGG | + | chr3_3:63630526-63630545 | Msa0464050:intron | 30.0% |
| !! | GAAAATGTTGGTGTTAATTC+AGG | + | chr3_3:63630558-63630577 | Msa0464050:intron | 30.0% |
| ! | AATATTCTGACTTGTGTATC+TGG | + | chr3_3:63630663-63630682 | Msa0464050:intron | 30.0% |
| ! | ATATTCTGACTTGTGTATCT+GGG | + | chr3_3:63630664-63630683 | Msa0464050:intron | 30.0% |
| ACTTACGATGGTATTGTTAA+TGG | + | chr3_3:63630830-63630849 | Msa0464050:CDS | 30.0% | |
| ATAAACATACGTTGTTGCTA+TGG | - | chr3_3:63630858-63630877 | None:intergenic | 30.0% | |
| TTGCTGAATAGAATATCTAG+TGG | - | chr3_3:63631200-63631219 | None:intergenic | 30.0% | |
| CAATTTAGCTACTTGAACAT+GGG | + | chr3_3:63631217-63631236 | Msa0464050:intron | 30.0% | |
| CAGAAGAAATTCCACTAATA+GGG | - | chr3_3:63631716-63631735 | None:intergenic | 30.0% | |
| ! | TTGTAATCTTCCCAATTTTG+TGG | + | chr3_3:63631828-63631847 | Msa0464050:exon | 30.0% |
| ATTAAACCCACCACAAAATT+GGG | - | chr3_3:63631841-63631860 | None:intergenic | 30.0% | |
| AATTAAACCCACCACAAAAT+TGG | - | chr3_3:63631842-63631861 | None:intergenic | 30.0% | |
| GTTTAATTATGTCTTTGCCA+CGG | + | chr3_3:63631854-63631873 | Msa0464050:three_prime_UTR | 30.0% | |
| TTTAATTATGTCTTTGCCAC+GGG | + | chr3_3:63631855-63631874 | Msa0464050:three_prime_UTR | 30.0% | |
| TACTAGCAACTACAATAGAT+AGG | - | chr3_3:63631885-63631904 | None:intergenic | 30.0% | |
| TCTTTAACTGATTGTGAATC+TGG | + | chr3_3:63631916-63631935 | Msa0464050:three_prime_UTR | 30.0% | |
| ATTGTGAATCTGGAAAACTA+TGG | + | chr3_3:63631926-63631945 | Msa0464050:three_prime_UTR | 30.0% | |
| TTGTGAATCTGGAAAACTAT+GGG | + | chr3_3:63631927-63631946 | Msa0464050:three_prime_UTR | 30.0% | |
| GCAAAACACCAAGTAATAAA+AGG | - | chr3_3:63631978-63631997 | None:intergenic | 30.0% | |
| ! | CTGAACTATTTTGTTCATCT+AGG | + | chr3_3:63631997-63632016 | Msa0464050:three_prime_UTR | 30.0% |
| !! | AAATGTTGGGTTTAGGGTTT+TGG | - | chr3_3:63628806-63628825 | None:intergenic | 35.0% |
| GTTCTGCATTGTTGAAATGT+TGG | - | chr3_3:63628820-63628839 | None:intergenic | 35.0% | |
| TTGTTGTGAAGAGTTTGAAG+TGG | - | chr3_3:63628872-63628891 | None:intergenic | 35.0% | |
| !! | ATAGATGAAAGAGTGTCAGA+AGG | - | chr3_3:63629167-63629186 | None:intergenic | 35.0% |
| TAGAGAAGCTAACTCTGTAA+CGG | + | chr3_3:63629229-63629248 | Msa0464050:CDS | 35.0% | |
| TTAATGCTATGGGAACTACT+GGG | + | chr3_3:63629426-63629445 | Msa0464050:CDS | 35.0% | |
| !! | ATTCTTGCTATTCCTATTCC+AGG | + | chr3_3:63629464-63629483 | Msa0464050:CDS | 35.0% |
| !! | TGTGAGAGTGTTTGAGTTTA+TGG | + | chr3_3:63629612-63629631 | Msa0464050:intron | 35.0% |
| TTGACAATGCAGATATCGTT+AGG | + | chr3_3:63629735-63629754 | Msa0464050:intron | 35.0% | |
| !! | TTAGGTTGAACATCTTCATC+CGG | + | chr3_3:63629753-63629772 | Msa0464050:intron | 35.0% |
| ! | TGCAAAGTTTAGGTTAAACC+CGG | - | chr3_3:63629775-63629794 | None:intergenic | 35.0% |
| CTTGTACGTAAACACTCATT+TGG | + | chr3_3:63629898-63629917 | Msa0464050:intron | 35.0% | |
| AGACCGAATAAGACACTATT+TGG | - | chr3_3:63630262-63630281 | None:intergenic | 35.0% | |
| CCAAAATCAGCAGAATCTTT+CGG | - | chr3_3:63630355-63630374 | None:intergenic | 35.0% | |
| ! | TGCCTGAGTACTTTAAGTTT+CGG | - | chr3_3:63630444-63630463 | None:intergenic | 35.0% |
| AGGAACACGTTTGAAAATGT+TGG | + | chr3_3:63630546-63630565 | Msa0464050:intron | 35.0% | |
| ! | TTTTTATGCCAAACGAATCC+AGG | + | chr3_3:63630590-63630609 | Msa0464050:intron | 35.0% |
| ! | TTTTATGCCAAACGAATCCA+GGG | + | chr3_3:63630591-63630610 | Msa0464050:intron | 35.0% |
| TCAGAAATGGTCATTTGACA+CGG | - | chr3_3:63630636-63630655 | None:intergenic | 35.0% | |
| AAGAACAGCAATCTTATGCT+TGG | + | chr3_3:63630758-63630777 | Msa0464050:CDS | 35.0% | |
| AATGTCTCAATGAGAAAAGC+AGG | - | chr3_3:63630891-63630910 | None:intergenic | 35.0% | |
| CTCTCTAATACATTGCAGAA+TGG | + | chr3_3:63631064-63631083 | Msa0464050:intron | 35.0% | |
| AACTGGATCAATTGACATCA+TGG | - | chr3_3:63631153-63631172 | None:intergenic | 35.0% | |
| CAATTGATCCAGTTTGCATT+CGG | + | chr3_3:63631159-63631178 | Msa0464050:intron | 35.0% | |
| GCAATTTAGCTACTTGAACA+TGG | + | chr3_3:63631216-63631235 | Msa0464050:intron | 35.0% | |
| GAACATGGGTTTATTCTGAA+TGG | + | chr3_3:63631231-63631250 | Msa0464050:intron | 35.0% | |
| ATGGGTTTATTCTGAATGGA+TGG | + | chr3_3:63631235-63631254 | Msa0464050:intron | 35.0% | |
| ! | ATCTCAATCACTCTAGTTTC+CGG | - | chr3_3:63631388-63631407 | None:intergenic | 35.0% |
| CCAGAAGAAATTCCACTAAT+AGG | - | chr3_3:63631717-63631736 | None:intergenic | 35.0% | |
| CCTATTAGTGGAATTTCTTC+TGG | + | chr3_3:63631714-63631733 | Msa0464050:CDS | 35.0% | |
| ! | TAATCTTCCCAATTTTGTGG+TGG | + | chr3_3:63631831-63631850 | Msa0464050:exon | 35.0% |
| ! | AATCTTCCCAATTTTGTGGT+GGG | + | chr3_3:63631832-63631851 | Msa0464050:exon | 35.0% |
| TCTGGAAAACTATGGGATTT+CGG | + | chr3_3:63631934-63631953 | Msa0464050:three_prime_UTR | 35.0% | |
| !! | ACGCTTAGCCTTTTATTACT+TGG | + | chr3_3:63631967-63631986 | Msa0464050:three_prime_UTR | 35.0% |
| TGATTACAAAGTGTGCACAA+TGG | - | chr3_3:63632089-63632108 | None:intergenic | 35.0% | |
| ! | AAAAGGGAAGTAGTGGAAAC+AGG | - | chr3_3:63628714-63628733 | None:intergenic | 40.0% |
| GAAAGAGAAAAGGGAAGTAG+TGG | - | chr3_3:63628721-63628740 | None:intergenic | 40.0% | |
| TCTCTCTCAGGAAAAGGAAA+AGG | - | chr3_3:63628771-63628790 | None:intergenic | 40.0% | |
| TTGAAAGAGGGAAGAGAGTT+CGG | - | chr3_3:63628985-63629004 | None:intergenic | 40.0% | |
| !! | GATTGGGTCGATTTGAAAGA+GGG | - | chr3_3:63628997-63629016 | None:intergenic | 40.0% |
| !! | AGATTGGGTCGATTTGAAAG+AGG | - | chr3_3:63628998-63629017 | None:intergenic | 40.0% |
| !! | AGCATTGGATTGGGATTTTG+AGG | - | chr3_3:63629094-63629113 | None:intergenic | 40.0% |
| ! | AGTTGGTTGAAACGGATTTG+CGG | - | chr3_3:63629133-63629152 | None:intergenic | 40.0% |
| !! | AGAAGGACGGATTTTGTAGT+TGG | - | chr3_3:63629150-63629169 | None:intergenic | 40.0% |
| !! | ATGAAAGAGTGTCAGAAGGA+CGG | - | chr3_3:63629163-63629182 | None:intergenic | 40.0% |
| !! | ATTGCTGATTCCATTTACGG+TGG | + | chr3_3:63629185-63629204 | Msa0464050:CDS | 40.0% |
| TGATTCCATTTACGGTGGTT+TGG | + | chr3_3:63629190-63629209 | Msa0464050:CDS | 40.0% | |
| AGAAACCAAACCACCGTAAA+TGG | - | chr3_3:63629198-63629217 | None:intergenic | 40.0% | |
| TGACCAACGTCAAGAACATT+CGG | - | chr3_3:63629257-63629276 | None:intergenic | 40.0% | |
| TACAAGGAAGAGGAACAACA+AGG | - | chr3_3:63629283-63629302 | None:intergenic | 40.0% | |
| GTTAATGCTATGGGAACTAC+TGG | + | chr3_3:63629425-63629444 | Msa0464050:CDS | 40.0% | |
| TTGAGTTTATGGAAACGGCT+TGG | + | chr3_3:63629623-63629642 | Msa0464050:intron | 40.0% | |
| TGAGTTTATGGAAACGGCTT+GGG | + | chr3_3:63629624-63629643 | Msa0464050:intron | 40.0% | |
| TCTGCATTGTCAATTGAGCT+AGG | - | chr3_3:63629728-63629747 | None:intergenic | 40.0% | |
| ! | TAGGTTGAACATCTTCATCC+GGG | + | chr3_3:63629754-63629773 | Msa0464050:intron | 40.0% |
| TTTCGGAAACTTTGATGCAC+AGG | - | chr3_3:63630338-63630357 | None:intergenic | 40.0% | |
| !!! | CCGAAAGATTCTGCTGATTT+TGG | + | chr3_3:63630352-63630371 | Msa0464050:CDS | 40.0% |
| TTTGGATTGCTTGTCCCTAA+TGG | + | chr3_3:63630370-63630389 | Msa0464050:CDS | 40.0% | |
| GGAAGTTATGCTATTACAGC+AGG | + | chr3_3:63630391-63630410 | Msa0464050:CDS | 40.0% | |
| ! | CCTGAGTACTTTAAGTTTCG+GGG | - | chr3_3:63630442-63630461 | None:intergenic | 40.0% |
| ! | GCCTGAGTACTTTAAGTTTC+GGG | - | chr3_3:63630443-63630462 | None:intergenic | 40.0% |
| GAAAATTCCCTGGATTCGTT+TGG | - | chr3_3:63630601-63630620 | None:intergenic | 40.0% | |
| GTCATTTGACACGGTAACAA+TGG | - | chr3_3:63630627-63630646 | None:intergenic | 40.0% | |
| AGTGCCATAGTCTTTAACAC+CGG | + | chr3_3:63631366-63631385 | Msa0464050:intron | 40.0% | |
| ! | GTTTCCGGTGTTAAAGACTA+TGG | - | chr3_3:63631373-63631392 | None:intergenic | 40.0% |
| !! | GGTGCAAACATTGATTCTCT+CGG | - | chr3_3:63631600-63631619 | None:intergenic | 40.0% |
| !! | TCTAACAGTGATGATGGTGA+CGG | - | chr3_3:63631627-63631646 | None:intergenic | 40.0% |
| TCACCATCATCACTGTTAGA+CGG | + | chr3_3:63631627-63631646 | Msa0464050:CDS | 40.0% | |
| ACAGGATTTACTCCTGCATT+AGG | + | chr3_3:63631690-63631709 | Msa0464050:CDS | 40.0% | |
| ACAAGTGTGAGTGTCAAAGT+GGG | - | chr3_3:63631774-63631793 | None:intergenic | 40.0% | |
| GGGAAGATTACAATGCTACA+GGG | - | chr3_3:63631821-63631840 | None:intergenic | 40.0% | |
| TGGGAAGATTACAATGCTAC+AGG | - | chr3_3:63631822-63631841 | None:intergenic | 40.0% | |
| CTGGAAAACTATGGGATTTC+GGG | + | chr3_3:63631935-63631954 | Msa0464050:three_prime_UTR | 40.0% | |
| ! | CATCTAGGGTCAGTAATTCT+AGG | + | chr3_3:63632012-63632031 | Msa0464050:three_prime_UTR | 40.0% |
| !! | AGGGAATTAGAGGGTTGATA+CGG | - | chr3_3:63632121-63632140 | None:intergenic | 40.0% |
| TATCAACCCTCTAATTCCCT+TGG | + | chr3_3:63632121-63632140 | Msa0464050:three_prime_UTR | 40.0% | |
| GGATTACCAAGGGAATTAGA+GGG | - | chr3_3:63632130-63632149 | None:intergenic | 40.0% | |
| TGGATTACCAAGGGAATTAG+AGG | - | chr3_3:63632131-63632150 | None:intergenic | 40.0% | |
| TCTCTCTCTCTCTCAGGAAA+AGG | - | chr3_3:63628777-63628796 | None:intergenic | 45.0% | |
| AGTTGTTCTCTCTCTCTCTC+AGG | - | chr3_3:63628783-63628802 | None:intergenic | 45.0% | |
| TAGGAGAGAGTTGCATGTGT+CGG | - | chr3_3:63628931-63628950 | None:intergenic | 45.0% | |
| ! | CTGTGTAGAGAGTGTAACCT+AGG | - | chr3_3:63628950-63628969 | None:intergenic | 45.0% |
| AAGAGAGTTCGGAGACTTTG+AGG | - | chr3_3:63628974-63628993 | None:intergenic | 45.0% | |
| TTGCAGTGAGGAGTGAGATT+GGG | - | chr3_3:63629013-63629032 | None:intergenic | 45.0% | |
| TTTGCAGTGAGGAGTGAGAT+TGG | - | chr3_3:63629014-63629033 | None:intergenic | 45.0% | |
| TGTCAATGGAGTTTGCAGTG+AGG | - | chr3_3:63629025-63629044 | None:intergenic | 45.0% | |
| GTCAGGGTAAGAGATGTCAA+TGG | - | chr3_3:63629039-63629058 | None:intergenic | 45.0% | |
| !!! | AGAGTTTTGAAGGGAGGATG+TGG | - | chr3_3:63629070-63629089 | None:intergenic | 45.0% |
| !!! | TGAGGTAGAGTTTTGAAGGG+AGG | - | chr3_3:63629076-63629095 | None:intergenic | 45.0% |
| !! | CTACGCAAGAGCATTGGATT+GGG | - | chr3_3:63629103-63629122 | None:intergenic | 45.0% |
| !! | TCTACGCAAGAGCATTGGAT+TGG | - | chr3_3:63629104-63629123 | None:intergenic | 45.0% |
| ATCCAATGCTCTTGCGTAGA+TGG | + | chr3_3:63629104-63629123 | Msa0464050:CDS | 45.0% | |
| ! | TTCCATCTACGCAAGAGCAT+TGG | - | chr3_3:63629109-63629128 | None:intergenic | 45.0% |
| GATCCGAATGTTCTTGACGT+TGG | + | chr3_3:63629251-63629270 | Msa0464050:CDS | 45.0% | |
| GTCTTATGTTGTTCAGCCGT+TGG | + | chr3_3:63629346-63629365 | Msa0464050:CDS | 45.0% | |
| ! | CCCCGAAACTTAAAGTACTC+AGG | + | chr3_3:63630439-63630458 | Msa0464050:intron | 45.0% |
| ACAATGGAGCGAAAATTCCC+TGG | - | chr3_3:63630611-63630630 | None:intergenic | 45.0% | |
| CAAGAAACAGCTAGAGAAGC+TGG | - | chr3_3:63630722-63630741 | None:intergenic | 45.0% | |
| AATGTTACCGTGCAACAGAC+TGG | + | chr3_3:63630782-63630801 | Msa0464050:CDS | 45.0% | |
| GTGACTTCTTGCACTTACGA+TGG | + | chr3_3:63630818-63630837 | Msa0464050:CDS | 45.0% | |
| TGAGAAAAGCAGGAACGTAG+AGG | - | chr3_3:63630881-63630900 | None:intergenic | 45.0% | |
| ! | TAATTTTCTTGCCTCCCTGC+AGG | + | chr3_3:63630964-63630983 | Msa0464050:intron | 45.0% |
| TTGATCCAGTTTGCATTCGG+TGG | + | chr3_3:63631162-63631181 | Msa0464050:intron | 45.0% | |
| GATTCTCTCGGAACAACTGT+AGG | - | chr3_3:63631588-63631607 | None:intergenic | 45.0% | |
| !! | TAACAGTGATGATGGTGACG+GGG | - | chr3_3:63631625-63631644 | None:intergenic | 45.0% |
| !! | CTAACAGTGATGATGGTGAC+GGG | - | chr3_3:63631626-63631645 | None:intergenic | 45.0% |
| GTTCCGTCTAACAGTGATGA+TGG | - | chr3_3:63631633-63631652 | None:intergenic | 45.0% | |
| TCACTGTTAGACGGAACTGA+TGG | + | chr3_3:63631636-63631655 | Msa0464050:CDS | 45.0% | |
| CACTGTTAGACGGAACTGAT+GGG | + | chr3_3:63631637-63631656 | Msa0464050:CDS | 45.0% | |
| GCAGGAGTAAATCCTGTTGA+AGG | - | chr3_3:63631687-63631706 | None:intergenic | 45.0% | |
| ! | AGTGGGTAATGGTTTCACCA+AGG | - | chr3_3:63631757-63631776 | None:intergenic | 45.0% |
| GTGAGTGTCAAAGTGGGTAA+TGG | - | chr3_3:63631768-63631787 | None:intergenic | 45.0% | |
| CACAAGTGTGAGTGTCAAAG+TGG | - | chr3_3:63631775-63631794 | None:intergenic | 45.0% | |
| GCTGAACTCTGGATTACCAA+GGG | - | chr3_3:63632140-63632159 | None:intergenic | 45.0% | |
| GACACATGCAACTCTCTCCT+AGG | + | chr3_3:63628930-63628949 | Msa0464050:CDS | 50.0% | |
| GGATGTGGTGTTCAACGTCA+GGG | - | chr3_3:63629055-63629074 | None:intergenic | 50.0% | |
| AGGATGTGGTGTTCAACGTC+AGG | - | chr3_3:63629056-63629075 | None:intergenic | 50.0% | |
| GGAACTACTGGGATTTCTGC+TGG | + | chr3_3:63629437-63629456 | Msa0464050:CDS | 50.0% | |
| CGGTCTACGCTGTGAATGTA+AGG | + | chr3_3:63630276-63630295 | Msa0464050:intron | 50.0% | |
| TATGGCCACCGAATGCAAAC+TGG | - | chr3_3:63631170-63631189 | None:intergenic | 50.0% | |
| AAATGATTCTGCAGGGTCGC+AGG | + | chr3_3:63631539-63631558 | Msa0464050:intron | 50.0% | |
| TAGGTGGGGCAATAAGAGGA+GGG | - | chr3_3:63631569-63631588 | None:intergenic | 50.0% | |
| ACTGTAGGTGGGGCAATAAG+AGG | - | chr3_3:63631573-63631592 | None:intergenic | 50.0% | |
| TCTCGGAACAACTGTAGGTG+GGG | - | chr3_3:63631583-63631602 | None:intergenic | 50.0% | |
| CTCTCGGAACAACTGTAGGT+GGG | - | chr3_3:63631584-63631603 | None:intergenic | 50.0% | |
| TCTCTCGGAACAACTGTAGG+TGG | - | chr3_3:63631585-63631604 | None:intergenic | 50.0% | |
| GAGATCACCCAAATCCTCTG+TGG | + | chr3_3:63631659-63631678 | Msa0464050:CDS | 50.0% | |
| !! | GAAGGCACCACAGAGGATTT+GGG | - | chr3_3:63631669-63631688 | None:intergenic | 50.0% |
| !! | TGAAGGCACCACAGAGGATT+TGG | - | chr3_3:63631670-63631689 | None:intergenic | 50.0% |
| CCACTAATAGGGCCTAATGC+AGG | - | chr3_3:63631705-63631724 | None:intergenic | 50.0% | |
| CCTGCATTAGGCCCTATTAG+TGG | + | chr3_3:63631702-63631721 | Msa0464050:CDS | 50.0% | |
| ! | TGGTTTCACCAAGGAGCATG+CGG | - | chr3_3:63631748-63631767 | None:intergenic | 50.0% |
| !! | ACAATAGATAGGAGCACCCG+TGG | - | chr3_3:63631874-63631893 | None:intergenic | 50.0% |
| GGCTGAACTCTGGATTACCA+AGG | - | chr3_3:63632141-63632160 | None:intergenic | 50.0% | |
| CATGTGTCGGAGGTTGTGCA+TGG | - | chr3_3:63628918-63628937 | None:intergenic | 55.0% | |
| GAGAGAGTTGCATGTGTCGG+AGG | - | chr3_3:63628928-63628947 | None:intergenic | 55.0% | |
| CACTGTGTGCAGTGTAGCTG+TGG | + | chr3_3:63630415-63630434 | Msa0464050:CDS | 55.0% | |
| GTTACCGTGCAACAGACTGG+TGG | + | chr3_3:63630785-63630804 | Msa0464050:CDS | 55.0% | |
| ACCACCACCAGTCTGTTGCA+CGG | - | chr3_3:63630792-63630811 | None:intergenic | 55.0% | |
| ACATCGAGGCTGAAGGGATG+GGG | - | chr3_3:63630994-63631013 | None:intergenic | 55.0% | |
| GACATCGAGGCTGAAGGGAT+GGG | - | chr3_3:63630995-63631014 | None:intergenic | 55.0% | |
| ACCTGGACATCGAGGCTGAA+GGG | - | chr3_3:63631000-63631019 | None:intergenic | 55.0% | |
| GAACACTGACCTGGACATCG+AGG | - | chr3_3:63631008-63631027 | None:intergenic | 55.0% | |
| AAGGATGCGGAACACTGACC+TGG | - | chr3_3:63631017-63631036 | None:intergenic | 55.0% | |
| GTAGGTGGGGCAATAAGAGG+AGG | - | chr3_3:63631570-63631589 | None:intergenic | 55.0% | |
| TCCTCTGTGGTGCCTTCAAC+AGG | + | chr3_3:63631672-63631691 | Msa0464050:CDS | 55.0% | |
| !! | TCCTGTTGAAGGCACCACAG+AGG | - | chr3_3:63631676-63631695 | None:intergenic | 55.0% |
| ACCGTGCAACAGACTGGTGG+TGG | + | chr3_3:63630788-63630807 | Msa0464050:CDS | 60.0% | |
| AGGGATGGGGTCAACCTGCA+GGG | - | chr3_3:63630981-63631000 | None:intergenic | 60.0% | |
| AAGGGATGGGGTCAACCTGC+AGG | - | chr3_3:63630982-63631001 | None:intergenic | 60.0% | |
| GGACATCGAGGCTGAAGGGA+TGG | - | chr3_3:63630996-63631015 | None:intergenic | 60.0% | |
| TCCCTTCAGCCTCGATGTCC+AGG | + | chr3_3:63630996-63631015 | Msa0464050:CDS | 60.0% | |
| GACCTGGACATCGAGGCTGA+AGG | - | chr3_3:63631001-63631020 | None:intergenic | 60.0% | |
| !! | AGTGATGATGGTGACGGGGC+TGG | - | chr3_3:63631621-63631640 | None:intergenic | 60.0% |
| TGCTTCTGCCGCATGCTCCT+TGG | + | chr3_3:63631737-63631756 | Msa0464050:CDS | 60.0% | |
| GATGGGGTCAACCTGCAGGG+AGG | - | chr3_3:63630978-63630997 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 63628645 | 63632163 | 63628645 | ID=Msa0464050;Name=Msa0464050 |
| chr3_3 | mRNA | 63628645 | 63632163 | 63628645 | ID=Msa0464050-mRNA-1;Parent=Msa0464050;Name=Msa0464050-mRNA-1;_AED=0.02;_eAED=0.02;_QI=186|1|1|1|1|1|5|330|415 |
| chr3_3 | exon | 63628645 | 63629485 | 63628645 | ID=Msa0464050-mRNA-1:exon:13903;Parent=Msa0464050-mRNA-1 |
| chr3_3 | exon | 63630335 | 63630452 | 63630335 | ID=Msa0464050-mRNA-1:exon:13904;Parent=Msa0464050-mRNA-1 |
| chr3_3 | exon | 63630706 | 63630867 | 63630706 | ID=Msa0464050-mRNA-1:exon:13905;Parent=Msa0464050-mRNA-1 |
| chr3_3 | exon | 63630986 | 63631017 | 63630986 | ID=Msa0464050-mRNA-1:exon:13906;Parent=Msa0464050-mRNA-1 |
| chr3_3 | exon | 63631553 | 63632163 | 63631553 | ID=Msa0464050-mRNA-1:exon:13907;Parent=Msa0464050-mRNA-1 |
| chr3_3 | five_prime_UTR | 63628645 | 63628830 | 63628645 | ID=Msa0464050-mRNA-1:five_prime_utr;Parent=Msa0464050-mRNA-1 |
| chr3_3 | CDS | 63628831 | 63629485 | 63628831 | ID=Msa0464050-mRNA-1:cds;Parent=Msa0464050-mRNA-1 |
| chr3_3 | CDS | 63630335 | 63630452 | 63630335 | ID=Msa0464050-mRNA-1:cds;Parent=Msa0464050-mRNA-1 |
| chr3_3 | CDS | 63630706 | 63630867 | 63630706 | ID=Msa0464050-mRNA-1:cds;Parent=Msa0464050-mRNA-1 |
| chr3_3 | CDS | 63630986 | 63631017 | 63630986 | ID=Msa0464050-mRNA-1:cds;Parent=Msa0464050-mRNA-1 |
| chr3_3 | CDS | 63631553 | 63631833 | 63631553 | ID=Msa0464050-mRNA-1:cds;Parent=Msa0464050-mRNA-1 |
| chr3_3 | three_prime_UTR | 63631834 | 63632163 | 63631834 | ID=Msa0464050-mRNA-1:three_prime_utr;Parent=Msa0464050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
