AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476790 MtrunA17_Chr3g0137351 95.682 579 21 1 1 579 1 575 0.0 1085
Msa0476790 MtrunA17_Chr2g0304631 61.588 466 179 0 59 524 59 524 0.0 588
Msa0476790 MtrunA17_Chr1g0208531 43.460 474 265 3 53 525 62 533 1.09e-139 416
Msa0476790 MtrunA17_Chr4g0065031 44.578 249 137 1 58 306 67 314 9.87e-65 214
Msa0476790 MtrunA17_Chr4g0065021 45.972 211 108 1 315 525 1 205 2.56e-60 199
Msa0476790 MtrunA17_Chr2g0329621 23.579 475 307 12 67 517 44 486 2.10e-40 154
Msa0476790 MtrunA17_Chr5g0401081 23.191 470 302 17 70 511 42 480 3.38e-18 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476790 AT2G25270.1 58.442 462 192 0 58 519 66 527 0.0 605
Msa0476790 AT2G12400.1 59.494 474 192 0 51 524 54 527 0.0 570
Msa0476790 AT1G80540.1 44.008 509 265 4 21 525 39 531 1.17e-136 408
Msa0476790 AT1G80540.3 46.154 468 248 3 62 525 18 485 2.66e-135 403
Msa0476790 AT1G71110.1 41.729 532 284 9 14 528 14 536 6.22e-134 402
Msa0476790 AT1G80540.2 45.623 377 203 2 151 525 2 378 1.02e-106 326
Msa0476790 AT5G67550.1 23.593 462 312 16 67 504 35 479 4.90e-25 109

Find 142 sgRNAs with CRISPR-Local

Find 512 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATATCCTTGTCACCTTTC+AGG 0.139855 3_3:-80703976 None:intergenic
TGATGTTCTCCTTGATCTTT+TGG 0.146015 3_3:+80703745 Msa0476790:CDS
CATTTATTCCAGCGGATATT+TGG 0.187146 3_3:-80703563 None:intergenic
TATAGTAAATTGATTTATAT+TGG 0.209299 3_3:+80703699 Msa0476790:CDS
CTTGTCACCTTTCAGGGATA+TGG 0.218444 3_3:-80703969 None:intergenic
TGAACAATATGAGGAGAATA+AGG 0.239883 3_3:-80701318 None:intergenic
TTCCGTGTGATGCAGGTATA+TGG 0.256029 3_3:+80703468 Msa0476790:intron
AGCGGATATTTGGTTATAAA+AGG 0.257211 3_3:-80703553 None:intergenic
ATGCTAGTATTGACGTTTCT+TGG 0.262824 3_3:+80701840 Msa0476790:CDS
GGAACAAACCACATAATATA+AGG 0.268760 3_3:-80702223 None:intergenic
GCAGGATGGTTTCTTGTTAC+TGG 0.271995 3_3:+80702197 Msa0476790:CDS
GTAGTACAGCGGCGTAAAAT+TGG 0.276338 3_3:-80702663 None:intergenic
ACTAGTAGTAAGAATTTAAA+TGG 0.285203 3_3:+80704091 Msa0476790:three_prime_UTR
ATATCAGTGACCGTCATTAT+TGG 0.295949 3_3:+80700767 Msa0476790:CDS
GCAGTCTGGTTCTTAGGCTT+TGG 0.311251 3_3:+80701211 Msa0476790:CDS
AAACTTACTTGTGGAGAATA+AGG 0.324746 3_3:-80702244 None:intergenic
CTGTATTTGCAGTAGGATAT+TGG 0.332325 3_3:-80702505 None:intergenic
GATTTATATTGGATTAATAA+TGG 0.334317 3_3:+80703710 Msa0476790:CDS
CTCGTGTCTGATTCTTTATC+CGG 0.336847 3_3:-80704158 None:intergenic
ATTGCAGCAGTCTGGTTCTT+AGG 0.348182 3_3:+80701205 Msa0476790:CDS
TAGTACAGCGGCGTAAAATT+GGG 0.367058 3_3:-80702662 None:intergenic
TATATCCTTGTCACCTTTCA+GGG 0.377226 3_3:-80703975 None:intergenic
TATCAGTGACCGTCATTATT+GGG 0.381706 3_3:+80700768 Msa0476790:CDS
TGTCGTAAAACCGAGCCTTA+TGG 0.388594 3_3:+80701268 Msa0476790:CDS
CGATGGGGCATAATTATATA+AGG 0.389069 3_3:-80703595 None:intergenic
TCCTTGTCACAACTCACTTC+AGG 0.391449 3_3:+80700368 Msa0476790:CDS
AGTGGAAGAGTGACATAGTA+AGG 0.409592 3_3:-80700336 None:intergenic
TTGTCACCTTTCAGGGATAT+GGG 0.414216 3_3:-80703968 None:intergenic
TATTCAGCATTGCAGCAGTC+TGG 0.424528 3_3:+80701197 Msa0476790:CDS
GGATGTGCAGTGCTATATAT+TGG 0.430073 3_3:+80701438 Msa0476790:CDS
CGTCTTGTTGGTGCAGGTGC+AGG 0.435124 3_3:-80703876 None:intergenic
ATATGGGAACTTTGTGTGCC+AGG 0.442707 3_3:+80703485 Msa0476790:CDS
AGTTCAAGTGCATGACTTGA+TGG 0.451478 3_3:-80703942 None:intergenic
ACTGGCACCCTTATATTATG+TGG 0.460712 3_3:+80702215 Msa0476790:CDS
ATATTGGATCCACTCATTCA+TGG 0.460754 3_3:-80702489 None:intergenic
ACAGATATCAATGCTTCTGC+TGG 0.461889 3_3:+80701636 Msa0476790:CDS
GAACAAACCACATAATATAA+GGG 0.462102 3_3:-80702222 None:intergenic
TGCTGTGGCTTTGTCCACAC+AGG 0.463296 3_3:-80702546 None:intergenic
AACATAAAGTGGAGAAAGAA+TGG 0.463953 3_3:-80700243 None:intergenic
GGTGTAGGTGCACGTCTTGT+TGG 0.466169 3_3:-80703855 None:intergenic
TTACCTTGCTCAAGCTAAGC+TGG 0.468609 3_3:+80701554 Msa0476790:CDS
AGAAGAAAAGATCCACTTGA+TGG 0.469125 3_3:+80700718 Msa0476790:CDS
AGGTAGGGGTTAAACGTCCT+TGG 0.469945 3_3:-80703533 None:intergenic
GGTGTAAGTGCAAGTCTTGT+TGG 0.470877 3_3:-80703921 None:intergenic
TGACAAGGAAGAAGAAGAAG+TGG 0.471078 3_3:-80700354 None:intergenic
TGAACTGGAAAAGGAGAATC+CGG 0.471494 3_3:+80704139 Msa0476790:three_prime_UTR
CAACAATGTTTCTTGTGCTG+TGG 0.471860 3_3:-80702561 None:intergenic
GTACCTGTGTGGCGTTGCTT+AGG 0.484831 3_3:-80702772 None:intergenic
GATATTTGGTTATAAAAGGT+AGG 0.486319 3_3:-80703549 None:intergenic
TGTGTGTGTGGGAGAGAAAG+AGG 0.492504 3_3:-80700160 None:intergenic
GACCGTGATGCGGCATCAAA+GGG 0.492792 3_3:-80704242 None:intergenic
CTCTCTGCAGCTAAGGGAAG+TGG 0.497169 3_3:-80700691 None:intergenic
TCTAGTTCTCTCTGCAGCTA+AGG 0.498856 3_3:-80700698 None:intergenic
GAACAATATGAGGAGAATAA+GGG 0.501658 3_3:-80701317 None:intergenic
AACTTCTGAACTAGTTAACT+TGG 0.502064 3_3:+80702598 Msa0476790:CDS
ATATTTGGTTATAAAAGGTA+GGG 0.504148 3_3:-80703548 None:intergenic
GGGAAAGAAAATGAGGGAAA+TGG 0.506714 3_3:+80700616 Msa0476790:intron
ATATCTGTTTGAACATTAGC+GGG 0.507500 3_3:-80701600 None:intergenic
AGACCGTGATGCGGCATCAA+AGG 0.510081 3_3:-80704243 None:intergenic
TGAAAGTTAGAAACATAAAG+TGG 0.510317 3_3:-80700254 None:intergenic
GGAAGTGGTGAGTTCTCATA+TGG 0.510395 3_3:-80700676 None:intergenic
AGTGCAGGTGCACGTCTTGT+TGG 0.512032 3_3:-80703888 None:intergenic
TCCGTGTGATGCAGGTATAT+GGG 0.515336 3_3:+80703469 Msa0476790:intron
TAGAGACATTAGTAATAACT+TGG 0.516630 3_3:-80702625 None:intergenic
TTATAAATGTGAACAATATG+AGG 0.516953 3_3:-80701327 None:intergenic
GGTAGGGGTTAAACGTCCTT+GGG 0.518838 3_3:-80703532 None:intergenic
ATGAACATTGTCCTGGTCTA+CGG 0.519643 3_3:+80703673 Msa0476790:CDS
AACTTGGTACCACTGGCAAA+TGG 0.520300 3_3:-80700194 None:intergenic
TAACTCAAACTTGGTACCAC+TGG 0.520920 3_3:-80700201 None:intergenic
GGTGCACGTCTTGTTGGTGC+AGG 0.521105 3_3:-80703882 None:intergenic
GAGGAGTGGCATCAAGGGAC+CGG 0.522360 3_3:-80702693 None:intergenic
TATGTTGAAGAATAACCATA+AGG 0.524244 3_3:-80701283 None:intergenic
GTTGGTGCAGGTGCAAGTGC+AGG 0.524450 3_3:-80703903 None:intergenic
AAAGGGATTATGTTTGAGCT+AGG 0.525254 3_3:-80704225 None:intergenic
CACTGTTTGCCATTTGCCAG+TGG 0.528837 3_3:+80700185 Msa0476790:five_prime_UTR
GTTGGTGCAGGTGCAGGTGT+AGG 0.529964 3_3:-80703870 None:intergenic
CATTGTCTATCTGTCATGTC+AGG 0.531193 3_3:-80702731 None:intergenic
GGCTTCAATAAATACATAAG+TGG 0.531993 3_3:+80700739 Msa0476790:CDS
CTTGCTCAAGCTAAGCTGGT+TGG 0.532960 3_3:+80701558 Msa0476790:CDS
TCGCAGAGGAGTGGCATCAA+GGG 0.535332 3_3:-80702698 None:intergenic
GTGTATTCTTAACTCAAACT+TGG 0.536382 3_3:-80700210 None:intergenic
ACTGCTGCAATGCTGAATAC+AGG 0.538751 3_3:-80701193 None:intergenic
TAAAACATCATTTATCAATG+AGG 0.539307 3_3:-80704008 None:intergenic
CTAGTTCTCTCTGCAGCTAA+GGG 0.540598 3_3:-80700697 None:intergenic
ATCGCAGAGGAGTGGCATCA+AGG 0.541147 3_3:-80702699 None:intergenic
AACATCGACGTTGCAATATG+TGG 0.549172 3_3:+80701485 Msa0476790:CDS
TGTGAATGTTTCTCGAACAA+AGG 0.550831 3_3:-80703640 None:intergenic
AATATCTGTTTGAACATTAG+CGG 0.550951 3_3:-80701601 None:intergenic
ATATACAATGAACATTGTCC+TGG 0.555015 3_3:+80703666 Msa0476790:CDS
TCAATAAATACATAAGTGGA+TGG 0.556341 3_3:+80700743 Msa0476790:CDS
CTTGTAGCTCAACAAGCGAT+GGG 0.562399 3_3:-80703611 None:intergenic
GATTATGTTTGAGCTAGGAC+CGG 0.564430 3_3:-80704220 None:intergenic
AGTGCAAGTCTTGTTGGTGC+AGG 0.565751 3_3:-80703915 None:intergenic
TGGGTCATGCATATCTCTGA+TGG 0.568666 3_3:-80703513 None:intergenic
TATTTGGTTATAAAAGGTAG+GGG 0.569300 3_3:-80703547 None:intergenic
TCTTGTAGCTCAACAAGCGA+TGG 0.573873 3_3:-80703612 None:intergenic
GGTGCACGTCTTGTTGGTGC+AGG 0.574585 3_3:-80703849 None:intergenic
GTGAGCCTGATACAGGAGGC+TGG 0.576237 3_3:+80701794 Msa0476790:intron
ATATCCGCTGGAATAAATGT+TGG 0.576568 3_3:+80703567 Msa0476790:CDS
AATTGCAGCTTGGTAATCGC+AGG 0.576626 3_3:+80702179 Msa0476790:intron
CAGATATCAATGCTTCTGCT+GGG 0.577740 3_3:+80701637 Msa0476790:CDS
TCGAGAGCTGTATTTGCAGT+AGG 0.579126 3_3:-80702512 None:intergenic
TTTCCAGGGAAAGAAAATGA+GGG 0.581174 3_3:+80700610 Msa0476790:intron
TATTTATTGAAGCCATCAAG+TGG 0.584127 3_3:-80700730 None:intergenic
ATACACACCCCAAAAGATCA+AGG 0.584372 3_3:-80703754 None:intergenic
CCGCTGTACTACAATCAATC+CGG 0.592455 3_3:+80702674 Msa0476790:CDS
AGTACAGCGGCGTAAAATTG+GGG 0.593342 3_3:-80702661 None:intergenic
TTACTATAATGCCGTAGACC+AGG 0.595943 3_3:-80703684 None:intergenic
TGAAGAATAACCATAAGGCT+CGG 0.600991 3_3:-80701278 None:intergenic
CAACCAGCTTAGCTTGAGCA+AGG 0.602100 3_3:-80701557 None:intergenic
GTTGGTGCAGGAGCTCGTGT+AGG 0.611574 3_3:-80703837 None:intergenic
ATATCTCTGATGGTGAAACC+TGG 0.616906 3_3:-80703503 None:intergenic
TCTGTCATGTCAGGACGGAA+CGG 0.617776 3_3:-80702722 None:intergenic
TAGGTTTGATGTATTTGCTG+CGG 0.619393 3_3:+80700651 Msa0476790:CDS
GTCTATCTGTCATGTCAGGA+CGG 0.620648 3_3:-80702727 None:intergenic
ACAGATAGACAATGTGACTC+TGG 0.622158 3_3:+80702740 Msa0476790:CDS
GCAAACAGTGAGTGTGTGTG+TGG 0.623319 3_3:-80700172 None:intergenic
GCAGCTTGGTAATCGCAGGA+TGG 0.623748 3_3:+80702183 Msa0476790:intron
CATGTGTAGCCATGAATGAG+TGG 0.627764 3_3:+80702480 Msa0476790:CDS
GAACCTAAGCAACGCCACAC+AGG 0.630361 3_3:+80702769 Msa0476790:CDS
CATATCCCTGAAAGGTGACA+AGG 0.630948 3_3:+80703970 Msa0476790:exon
AGGTTACAGCCCAATAATGA+CGG 0.632883 3_3:-80700777 None:intergenic
GCTGTGGCTTTGTCCACACA+GGG 0.637372 3_3:-80702545 None:intergenic
ATTTCACTTACATGTACACA+AGG 0.639891 3_3:-80702012 None:intergenic
GTATCAAGCTGATTCTGCTG+TGG 0.640686 3_3:+80701509 Msa0476790:CDS
GGGGTGTGTATGGAAGAGAG+CGG 0.642171 3_3:+80703766 Msa0476790:CDS
ACCTGAAGTGAGTTGTGACA+AGG 0.644198 3_3:-80700369 None:intergenic
ACTTAGCCCATATCCCTGAA+AGG 0.648925 3_3:+80703962 Msa0476790:exon
CGGAACGGATCGCAGAGGAG+TGG 0.649357 3_3:-80702707 None:intergenic
GACAGAAGTAACAAACAATG+AGG 0.650146 3_3:-80701249 None:intergenic
GTTACCAACATTTATTCCAG+CGG 0.668217 3_3:-80703571 None:intergenic
CGACGATATACTGCCCTGTG+TGG 0.675578 3_3:+80702532 Msa0476790:CDS
GTACAGCGGCGTAAAATTGG+GGG 0.677666 3_3:-80702660 None:intergenic
TCAGAGATATGCATGACCCA+AGG 0.692493 3_3:+80703516 Msa0476790:CDS
CATTCAATTATGTACCTGTG+TGG 0.698431 3_3:-80702783 None:intergenic
TTGTAGCTCAACAAGCGATG+GGG 0.699834 3_3:-80703610 None:intergenic
TGTTCAAACAGATATTGATG+CGG 0.701433 3_3:+80701608 Msa0476790:CDS
GCAGTGCTATATATTGGACA+AGG 0.702087 3_3:+80701444 Msa0476790:CDS
GTGTGTATGGAAGAGAGCGG+AGG 0.703717 3_3:+80703769 Msa0476790:CDS
CAAACAGTGAGTGTGTGTGT+GGG 0.704255 3_3:-80700171 None:intergenic
CAGGACGGAACGGATCGCAG+AGG 0.716395 3_3:-80702712 None:intergenic
CCGGATTGATTGTAGTACAG+CGG 0.723016 3_3:-80702674 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATATCTATAAAATTATA+TGG - chr3_3:80702305-80702324 None:intergenic 10.0%
!!! TATAGTAAATTGATTTATAT+TGG + chr3_3:80703699-80703718 Msa0476790:CDS 10.0%
!! AACATATCTATAAAATTATA+TGG - chr3_3:80702305-80702324 None:intergenic 10.0%
!!! TATAGTAAATTGATTTATAT+TGG + chr3_3:80703699-80703718 Msa0476790:CDS 10.0%
!! TTAATTATCGTTGTTAATTA+AGG + chr3_3:80700838-80700857 Msa0476790:intron 15.0%
!!! GGTATTTTATGAATTTTTTT+TGG - chr3_3:80703105-80703124 None:intergenic 15.0%
!! GGATATATTTATGTAAAATT+TGG - chr3_3:80703303-80703322 None:intergenic 15.0%
!! GATATAAAATGATTTATGTT+TGG - chr3_3:80703324-80703343 None:intergenic 15.0%
!! GATTTATATTGGATTAATAA+TGG + chr3_3:80703710-80703729 Msa0476790:CDS 15.0%
!!! GATTATTATTTTTTCTGTAT+TGG + chr3_3:80704041-80704060 Msa0476790:three_prime_UTR 15.0%
!! TTAATTATCGTTGTTAATTA+AGG + chr3_3:80700838-80700857 Msa0476790:intron 15.0%
!!! GGTATTTTATGAATTTTTTT+TGG - chr3_3:80703105-80703124 None:intergenic 15.0%
!! GGATATATTTATGTAAAATT+TGG - chr3_3:80703303-80703322 None:intergenic 15.0%
!! GATATAAAATGATTTATGTT+TGG - chr3_3:80703324-80703343 None:intergenic 15.0%
!! GATTTATATTGGATTAATAA+TGG + chr3_3:80703710-80703729 Msa0476790:CDS 15.0%
!!! GATTATTATTTTTTCTGTAT+TGG + chr3_3:80704041-80704060 Msa0476790:three_prime_UTR 15.0%
!! AAAAGAAAAAAAGTTAAGCA+AGG - chr3_3:80700536-80700555 None:intergenic 20.0%
!!! AATTTTGGACAACTAATTTT+TGG + chr3_3:80700913-80700932 Msa0476790:intron 20.0%
!! AAAATTCAATACCAACTAAA+AGG - chr3_3:80701102-80701121 None:intergenic 20.0%
!! TTATAAATGTGAACAATATG+AGG - chr3_3:80701330-80701349 None:intergenic 20.0%
!!! ACAATTTCTTATTGTTATTG+AGG + chr3_3:80701894-80701913 Msa0476790:intron 20.0%
!! GGTGATAATTAAAATTTATG+TGG - chr3_3:80702380-80702399 None:intergenic 20.0%
!! TTTAATTATATTAGAATGGG+TGG - chr3_3:80703078-80703097 None:intergenic 20.0%
!! ATATTTGGTTATAAAAGGTA+GGG - chr3_3:80703551-80703570 None:intergenic 20.0%
!! TAAAACATCATTTATCAATG+AGG - chr3_3:80704011-80704030 None:intergenic 20.0%
!! ACTAGTAGTAAGAATTTAAA+TGG + chr3_3:80704091-80704110 Msa0476790:three_prime_UTR 20.0%
!!! TATTTTATATGAACTGGAAA+AGG + chr3_3:80704130-80704149 Msa0476790:three_prime_UTR 20.0%
!! AAAAGAAAAAAAGTTAAGCA+AGG - chr3_3:80700536-80700555 None:intergenic 20.0%
!!! AATTTTGGACAACTAATTTT+TGG + chr3_3:80700913-80700932 Msa0476790:intron 20.0%
!! AAAATTCAATACCAACTAAA+AGG - chr3_3:80701102-80701121 None:intergenic 20.0%
!! TTATAAATGTGAACAATATG+AGG - chr3_3:80701330-80701349 None:intergenic 20.0%
!!! ACAATTTCTTATTGTTATTG+AGG + chr3_3:80701894-80701913 Msa0476790:intron 20.0%
!! GGTGATAATTAAAATTTATG+TGG - chr3_3:80702380-80702399 None:intergenic 20.0%
!! TTTAATTATATTAGAATGGG+TGG - chr3_3:80703078-80703097 None:intergenic 20.0%
!! ATATTTGGTTATAAAAGGTA+GGG - chr3_3:80703551-80703570 None:intergenic 20.0%
!! TAAAACATCATTTATCAATG+AGG - chr3_3:80704011-80704030 None:intergenic 20.0%
!! ACTAGTAGTAAGAATTTAAA+TGG + chr3_3:80704091-80704110 Msa0476790:three_prime_UTR 20.0%
!!! TATTTTATATGAACTGGAAA+AGG + chr3_3:80704130-80704149 Msa0476790:three_prime_UTR 20.0%
! TGAAAGTTAGAAACATAAAG+TGG - chr3_3:80700257-80700276 None:intergenic 25.0%
!!! CATTATTTTTTAGACAATGC+AGG + chr3_3:80700480-80700499 Msa0476790:intron 25.0%
!!! CTTTTCTTTTCATTTTTCCA+GGG + chr3_3:80700596-80700615 Msa0476790:intron 25.0%
! TCAATAAATACATAAGTGGA+TGG + chr3_3:80700743-80700762 Msa0476790:CDS 25.0%
!! GAACAAATTTTATTGAGCAA+GGG - chr3_3:80700810-80700829 None:intergenic 25.0%
!! AGAACAAATTTTATTGAGCA+AGG - chr3_3:80700811-80700830 None:intergenic 25.0%
! TCTATTATAACTGTGTTAAC+CGG - chr3_3:80700961-80700980 None:intergenic 25.0%
! GTTAACACAGTTATAATAGA+TGG + chr3_3:80700961-80700980 Msa0476790:intron 25.0%
! GTATATTCATTAAGCATCTA+AGG - chr3_3:80700998-80701017 None:intergenic 25.0%
!! ACACTTATTAACCATGATTT+TGG + chr3_3:80701027-80701046 Msa0476790:intron 25.0%
! ATTTGAACACCTGAAAATTA+TGG - chr3_3:80701063-80701082 None:intergenic 25.0%
! TATGTTGAAGAATAACCATA+AGG - chr3_3:80701286-80701305 None:intergenic 25.0%
!!! TTTCTATTCCTTTGTTTTTC+TGG + chr3_3:80701367-80701386 Msa0476790:intron 25.0%
! AATATCTGTTTGAACATTAG+CGG - chr3_3:80701604-80701623 None:intergenic 25.0%
!! TATACAGTGTTCTCAATTTT+CGG + chr3_3:80701980-80701999 Msa0476790:intron 25.0%
!! AAAGAGTATATAAGTGTAAG+TGG - chr3_3:80702047-80702066 None:intergenic 25.0%
! TAAAATGGTGCGTATAAAAA+GGG - chr3_3:80702074-80702093 None:intergenic 25.0%
! GAACAAACCACATAATATAA+GGG - chr3_3:80702225-80702244 None:intergenic 25.0%
!! ATTCAGATTTTACTAGCTAA+GGG - chr3_3:80702270-80702289 None:intergenic 25.0%
!! AATTCAGATTTTACTAGCTA+AGG - chr3_3:80702271-80702290 None:intergenic 25.0%
! ATTTCTCAAATACATCTATG+AGG - chr3_3:80702401-80702420 None:intergenic 25.0%
! TAGAGACATTAGTAATAACT+TGG - chr3_3:80702628-80702647 None:intergenic 25.0%
! CAAAATTAATTCTACTCCAT+GGG - chr3_3:80703196-80703215 None:intergenic 25.0%
!! ATAGTTTAAAACATTTGCCT+TGG + chr3_3:80703247-80703266 Msa0476790:intron 25.0%
! TATTTGGTTATAAAAGGTAG+GGG - chr3_3:80703550-80703569 None:intergenic 25.0%
! GATATTTGGTTATAAAAGGT+AGG - chr3_3:80703552-80703571 None:intergenic 25.0%
!!! TGTCGTTATTTTATATGAAC+TGG + chr3_3:80704124-80704143 Msa0476790:three_prime_UTR 25.0%
! TGAAAGTTAGAAACATAAAG+TGG - chr3_3:80700257-80700276 None:intergenic 25.0%
!!! CATTATTTTTTAGACAATGC+AGG + chr3_3:80700480-80700499 Msa0476790:intron 25.0%
!!! CTTTTCTTTTCATTTTTCCA+GGG + chr3_3:80700596-80700615 Msa0476790:intron 25.0%
! TCAATAAATACATAAGTGGA+TGG + chr3_3:80700743-80700762 Msa0476790:CDS 25.0%
!! GAACAAATTTTATTGAGCAA+GGG - chr3_3:80700810-80700829 None:intergenic 25.0%
!! AGAACAAATTTTATTGAGCA+AGG - chr3_3:80700811-80700830 None:intergenic 25.0%
! TCTATTATAACTGTGTTAAC+CGG - chr3_3:80700961-80700980 None:intergenic 25.0%
! GTTAACACAGTTATAATAGA+TGG + chr3_3:80700961-80700980 Msa0476790:intron 25.0%
! GTATATTCATTAAGCATCTA+AGG - chr3_3:80700998-80701017 None:intergenic 25.0%
!! ACACTTATTAACCATGATTT+TGG + chr3_3:80701027-80701046 Msa0476790:intron 25.0%
! ATTTGAACACCTGAAAATTA+TGG - chr3_3:80701063-80701082 None:intergenic 25.0%
! TATGTTGAAGAATAACCATA+AGG - chr3_3:80701286-80701305 None:intergenic 25.0%
!!! TTTCTATTCCTTTGTTTTTC+TGG + chr3_3:80701367-80701386 Msa0476790:intron 25.0%
! AATATCTGTTTGAACATTAG+CGG - chr3_3:80701604-80701623 None:intergenic 25.0%
!! TATACAGTGTTCTCAATTTT+CGG + chr3_3:80701980-80701999 Msa0476790:intron 25.0%
!! AAAGAGTATATAAGTGTAAG+TGG - chr3_3:80702047-80702066 None:intergenic 25.0%
! TAAAATGGTGCGTATAAAAA+GGG - chr3_3:80702074-80702093 None:intergenic 25.0%
! GAACAAACCACATAATATAA+GGG - chr3_3:80702225-80702244 None:intergenic 25.0%
!! ATTCAGATTTTACTAGCTAA+GGG - chr3_3:80702270-80702289 None:intergenic 25.0%
!! AATTCAGATTTTACTAGCTA+AGG - chr3_3:80702271-80702290 None:intergenic 25.0%
! ATTTCTCAAATACATCTATG+AGG - chr3_3:80702401-80702420 None:intergenic 25.0%
! TAGAGACATTAGTAATAACT+TGG - chr3_3:80702628-80702647 None:intergenic 25.0%
! CAAAATTAATTCTACTCCAT+GGG - chr3_3:80703196-80703215 None:intergenic 25.0%
!! ATAGTTTAAAACATTTGCCT+TGG + chr3_3:80703247-80703266 Msa0476790:intron 25.0%
! TATTTGGTTATAAAAGGTAG+GGG - chr3_3:80703550-80703569 None:intergenic 25.0%
! GATATTTGGTTATAAAAGGT+AGG - chr3_3:80703552-80703571 None:intergenic 25.0%
!!! TGTCGTTATTTTATATGAAC+TGG + chr3_3:80704124-80704143 Msa0476790:three_prime_UTR 25.0%
GTGTATTCTTAACTCAAACT+TGG - chr3_3:80700213-80700232 None:intergenic 30.0%
AACATAAAGTGGAGAAAGAA+TGG - chr3_3:80700246-80700265 None:intergenic 30.0%
GAAAACAAAAATGAAGTAGC+TGG - chr3_3:80700301-80700320 None:intergenic 30.0%
! TATGCAAACCAAGCTTTTAA+AGG + chr3_3:80700440-80700459 Msa0476790:intron 30.0%
! ATGCAAACCAAGCTTTTAAA+GGG + chr3_3:80700441-80700460 Msa0476790:intron 30.0%
!! TTTTTCTCCCTTTAAAAGCT+TGG - chr3_3:80700451-80700470 None:intergenic 30.0%
TAGACAATGCAGGATATTTA+TGG + chr3_3:80700490-80700509 Msa0476790:intron 30.0%
CCTGGAAAAATGAAAAGAAA+AGG - chr3_3:80700598-80700617 None:intergenic 30.0%
!! CCTTTTCTTTTCATTTTTCC+AGG + chr3_3:80700595-80700614 Msa0476790:intron 30.0%
! GAAATGGTGTAGTATTTTCT+AGG + chr3_3:80700632-80700651 Msa0476790:CDS 30.0%
TATTTATTGAAGCCATCAAG+TGG - chr3_3:80700733-80700752 None:intergenic 30.0%
GGCTTCAATAAATACATAAG+TGG + chr3_3:80700739-80700758 Msa0476790:CDS 30.0%
!!! AGTTTTGAGCTTAGTTTATG+TGG + chr3_3:80700865-80700884 Msa0476790:intron 30.0%
!! GTTTTGAGCTTAGTTTATGT+GGG + chr3_3:80700866-80700885 Msa0476790:intron 30.0%
! TTTTGAGCTTAGTTTATGTG+GGG + chr3_3:80700867-80700886 Msa0476790:intron 30.0%
! CGTGATTAACCATAATTTTC+AGG + chr3_3:80701051-80701070 Msa0476790:intron 30.0%
! GTTTAAATGAGCCTTTTAGT+TGG + chr3_3:80701088-80701107 Msa0476790:intron 30.0%
!! TAGTGAGTGGACTTAATTTT+TGG - chr3_3:80701129-80701148 None:intergenic 30.0%
CAAAAAGGAAAAATAGTGAG+TGG - chr3_3:80701142-80701161 None:intergenic 30.0%
ACTGACTGTATTCAACAAAA+AGG - chr3_3:80701157-80701176 None:intergenic 30.0%
! TTTTTGTTGAATACAGTCAG+TGG + chr3_3:80701156-80701175 Msa0476790:intron 30.0%
GAACAATATGAGGAGAATAA+GGG - chr3_3:80701320-80701339 None:intergenic 30.0%
TGAACAATATGAGGAGAATA+AGG - chr3_3:80701321-80701340 None:intergenic 30.0%
ACATGAAACCAGAAAAACAA+AGG - chr3_3:80701378-80701397 None:intergenic 30.0%
ATTACAAATTGCGTGTTAAC+AGG + chr3_3:80701412-80701431 Msa0476790:intron 30.0%
ATATCTGTTTGAACATTAGC+GGG - chr3_3:80701603-80701622 None:intergenic 30.0%
TGTTCAAACAGATATTGATG+CGG + chr3_3:80701608-80701627 Msa0476790:CDS 30.0%
ATTTCACTTACATGTACACA+AGG - chr3_3:80702015-80702034 None:intergenic 30.0%
TTGTGTACATGTAAGTGAAA+TGG + chr3_3:80702014-80702033 Msa0476790:intron 30.0%
GTAAAATGGTGCGTATAAAA+AGG - chr3_3:80702075-80702094 None:intergenic 30.0%
TGAGAAAATGTGATGATAAG+AGG - chr3_3:80702142-80702161 None:intergenic 30.0%
! TTTTGACATAAATTGCAGCT+TGG + chr3_3:80702169-80702188 Msa0476790:intron 30.0%
GGAACAAACCACATAATATA+AGG - chr3_3:80702226-80702245 None:intergenic 30.0%
AAACTTACTTGTGGAGAATA+AGG - chr3_3:80702247-80702266 None:intergenic 30.0%
AACTTCTGAACTAGTTAACT+TGG + chr3_3:80702598-80702617 Msa0476790:CDS 30.0%
TGAAAACACTATAATGCACT+TGG + chr3_3:80702817-80702836 Msa0476790:intron 30.0%
! GAACATTTTAGACTTTCACA+TGG - chr3_3:80702853-80702872 None:intergenic 30.0%
! TTTCTGTTCTGCATCATTTT+TGG + chr3_3:80702874-80702893 Msa0476790:intron 30.0%
!! TTCTGTTCTGCATCATTTTT+GGG + chr3_3:80702875-80702894 Msa0476790:intron 30.0%
! CTATCAAGAATCAAGGTTTT+TGG + chr3_3:80702900-80702919 Msa0476790:intron 30.0%
TTATATTAGAATGGGTGGTT+AGG - chr3_3:80703073-80703092 None:intergenic 30.0%
TCCACATGAATTTCAGATAA+GGG - chr3_3:80703172-80703191 None:intergenic 30.0%
ATCCACATGAATTTCAGATA+AGG - chr3_3:80703173-80703192 None:intergenic 30.0%
GCAAAATTAATTCTACTCCA+TGG - chr3_3:80703197-80703216 None:intergenic 30.0%
TTGGTTGAACAAAAGATTTG+AGG - chr3_3:80703284-80703303 None:intergenic 30.0%
! TTATGTATTAGCGTGTGTTT+TGG - chr3_3:80703387-80703406 None:intergenic 30.0%
AGCGGATATTTGGTTATAAA+AGG - chr3_3:80703556-80703575 None:intergenic 30.0%
! TTTTATAACCAAATATCCGC+TGG + chr3_3:80703555-80703574 Msa0476790:CDS 30.0%
ATATACAATGAACATTGTCC+TGG + chr3_3:80703666-80703685 Msa0476790:CDS 30.0%
GTGTATTCTTAACTCAAACT+TGG - chr3_3:80700213-80700232 None:intergenic 30.0%
AACATAAAGTGGAGAAAGAA+TGG - chr3_3:80700246-80700265 None:intergenic 30.0%
GAAAACAAAAATGAAGTAGC+TGG - chr3_3:80700301-80700320 None:intergenic 30.0%
! TATGCAAACCAAGCTTTTAA+AGG + chr3_3:80700440-80700459 Msa0476790:intron 30.0%
! ATGCAAACCAAGCTTTTAAA+GGG + chr3_3:80700441-80700460 Msa0476790:intron 30.0%
!! TTTTTCTCCCTTTAAAAGCT+TGG - chr3_3:80700451-80700470 None:intergenic 30.0%
TAGACAATGCAGGATATTTA+TGG + chr3_3:80700490-80700509 Msa0476790:intron 30.0%
CCTGGAAAAATGAAAAGAAA+AGG - chr3_3:80700598-80700617 None:intergenic 30.0%
!! CCTTTTCTTTTCATTTTTCC+AGG + chr3_3:80700595-80700614 Msa0476790:intron 30.0%
! GAAATGGTGTAGTATTTTCT+AGG + chr3_3:80700632-80700651 Msa0476790:CDS 30.0%
TATTTATTGAAGCCATCAAG+TGG - chr3_3:80700733-80700752 None:intergenic 30.0%
GGCTTCAATAAATACATAAG+TGG + chr3_3:80700739-80700758 Msa0476790:CDS 30.0%
!!! AGTTTTGAGCTTAGTTTATG+TGG + chr3_3:80700865-80700884 Msa0476790:intron 30.0%
!! GTTTTGAGCTTAGTTTATGT+GGG + chr3_3:80700866-80700885 Msa0476790:intron 30.0%
! TTTTGAGCTTAGTTTATGTG+GGG + chr3_3:80700867-80700886 Msa0476790:intron 30.0%
! CGTGATTAACCATAATTTTC+AGG + chr3_3:80701051-80701070 Msa0476790:intron 30.0%
! GTTTAAATGAGCCTTTTAGT+TGG + chr3_3:80701088-80701107 Msa0476790:intron 30.0%
!! TAGTGAGTGGACTTAATTTT+TGG - chr3_3:80701129-80701148 None:intergenic 30.0%
CAAAAAGGAAAAATAGTGAG+TGG - chr3_3:80701142-80701161 None:intergenic 30.0%
ACTGACTGTATTCAACAAAA+AGG - chr3_3:80701157-80701176 None:intergenic 30.0%
! TTTTTGTTGAATACAGTCAG+TGG + chr3_3:80701156-80701175 Msa0476790:intron 30.0%
GAACAATATGAGGAGAATAA+GGG - chr3_3:80701320-80701339 None:intergenic 30.0%
TGAACAATATGAGGAGAATA+AGG - chr3_3:80701321-80701340 None:intergenic 30.0%
ACATGAAACCAGAAAAACAA+AGG - chr3_3:80701378-80701397 None:intergenic 30.0%
ATTACAAATTGCGTGTTAAC+AGG + chr3_3:80701412-80701431 Msa0476790:intron 30.0%
ATATCTGTTTGAACATTAGC+GGG - chr3_3:80701603-80701622 None:intergenic 30.0%
TGTTCAAACAGATATTGATG+CGG + chr3_3:80701608-80701627 Msa0476790:CDS 30.0%
ATTTCACTTACATGTACACA+AGG - chr3_3:80702015-80702034 None:intergenic 30.0%
TTGTGTACATGTAAGTGAAA+TGG + chr3_3:80702014-80702033 Msa0476790:intron 30.0%
GTAAAATGGTGCGTATAAAA+AGG - chr3_3:80702075-80702094 None:intergenic 30.0%
TGAGAAAATGTGATGATAAG+AGG - chr3_3:80702142-80702161 None:intergenic 30.0%
! TTTTGACATAAATTGCAGCT+TGG + chr3_3:80702169-80702188 Msa0476790:intron 30.0%
GGAACAAACCACATAATATA+AGG - chr3_3:80702226-80702245 None:intergenic 30.0%
AAACTTACTTGTGGAGAATA+AGG - chr3_3:80702247-80702266 None:intergenic 30.0%
AACTTCTGAACTAGTTAACT+TGG + chr3_3:80702598-80702617 Msa0476790:CDS 30.0%
TGAAAACACTATAATGCACT+TGG + chr3_3:80702817-80702836 Msa0476790:intron 30.0%
! GAACATTTTAGACTTTCACA+TGG - chr3_3:80702853-80702872 None:intergenic 30.0%
! TTTCTGTTCTGCATCATTTT+TGG + chr3_3:80702874-80702893 Msa0476790:intron 30.0%
!! TTCTGTTCTGCATCATTTTT+GGG + chr3_3:80702875-80702894 Msa0476790:intron 30.0%
! CTATCAAGAATCAAGGTTTT+TGG + chr3_3:80702900-80702919 Msa0476790:intron 30.0%
TTATATTAGAATGGGTGGTT+AGG - chr3_3:80703073-80703092 None:intergenic 30.0%
TCCACATGAATTTCAGATAA+GGG - chr3_3:80703172-80703191 None:intergenic 30.0%
ATCCACATGAATTTCAGATA+AGG - chr3_3:80703173-80703192 None:intergenic 30.0%
GCAAAATTAATTCTACTCCA+TGG - chr3_3:80703197-80703216 None:intergenic 30.0%
TTGGTTGAACAAAAGATTTG+AGG - chr3_3:80703284-80703303 None:intergenic 30.0%
! TTATGTATTAGCGTGTGTTT+TGG - chr3_3:80703387-80703406 None:intergenic 30.0%
AGCGGATATTTGGTTATAAA+AGG - chr3_3:80703556-80703575 None:intergenic 30.0%
! TTTTATAACCAAATATCCGC+TGG + chr3_3:80703555-80703574 Msa0476790:CDS 30.0%
ATATACAATGAACATTGTCC+TGG + chr3_3:80703666-80703685 Msa0476790:CDS 30.0%
!!! GAGAAAGAATGGTTTTGTTG+TGG - chr3_3:80700235-80700254 None:intergenic 35.0%
AAAGTAAATGCAAGAGAGAG+AGG - chr3_3:80700402-80700421 None:intergenic 35.0%
! TTTTCCAGGGAAAGAAAATG+AGG + chr3_3:80700609-80700628 Msa0476790:intron 35.0%
TTTCCAGGGAAAGAAAATGA+GGG + chr3_3:80700610-80700629 Msa0476790:intron 35.0%
! TAGGTTTGATGTATTTGCTG+CGG + chr3_3:80700651-80700670 Msa0476790:CDS 35.0%
AGAAGAAAAGATCCACTTGA+TGG + chr3_3:80700718-80700737 Msa0476790:CDS 35.0%
ATATCAGTGACCGTCATTAT+TGG + chr3_3:80700767-80700786 Msa0476790:CDS 35.0%
TATCAGTGACCGTCATTATT+GGG + chr3_3:80700768-80700787 Msa0476790:CDS 35.0%
GGTTAATAAGTGTAGACAAC+TGG - chr3_3:80701020-80701039 None:intergenic 35.0%
GTTAATCACGTCCAAAATCA+TGG - chr3_3:80701041-80701060 None:intergenic 35.0%
GACAGAAGTAACAAACAATG+AGG - chr3_3:80701252-80701271 None:intergenic 35.0%
TGAAGAATAACCATAAGGCT+CGG - chr3_3:80701281-80701300 None:intergenic 35.0%
AAATTGCGTGTTAACAGGAT+TGG + chr3_3:80701417-80701436 Msa0476790:intron 35.0%
!! ATGCTAGTATTGACGTTTCT+TGG + chr3_3:80701840-80701859 Msa0476790:CDS 35.0%
TAGAGAACAATGTAGTAGCA+AGG + chr3_3:80702330-80702349 Msa0476790:intron 35.0%
ATATTGGATCCACTCATTCA+TGG - chr3_3:80702492-80702511 None:intergenic 35.0%
CTGTATTTGCAGTAGGATAT+TGG - chr3_3:80702508-80702527 None:intergenic 35.0%
CATTCAATTATGTACCTGTG+TGG - chr3_3:80702786-80702805 None:intergenic 35.0%
!! TCTGTTCTGCATCATTTTTG+GGG + chr3_3:80702876-80702895 Msa0476790:intron 35.0%
TAGCACTCTTCAAAAGATTG+AGG - chr3_3:80703126-80703145 None:intergenic 35.0%
ACATGAATTTCAGATAAGGG+TGG - chr3_3:80703169-80703188 None:intergenic 35.0%
! ACCCTTATCTGAAATTCATG+TGG + chr3_3:80703168-80703187 Msa0476790:intron 35.0%
TTGAGGCTAAAAATCAACCA+AGG - chr3_3:80703267-80703286 None:intergenic 35.0%
CATTTATTCCAGCGGATATT+TGG - chr3_3:80703566-80703585 None:intergenic 35.0%
ATATCCGCTGGAATAAATGT+TGG + chr3_3:80703567-80703586 Msa0476790:CDS 35.0%
GTTACCAACATTTATTCCAG+CGG - chr3_3:80703574-80703593 None:intergenic 35.0%
CGATGGGGCATAATTATATA+AGG - chr3_3:80703598-80703617 None:intergenic 35.0%
TGTGAATGTTTCTCGAACAA+AGG - chr3_3:80703643-80703662 None:intergenic 35.0%
! TGATGTTCTCCTTGATCTTT+TGG + chr3_3:80703745-80703764 Msa0476790:CDS 35.0%
! GATGTTCTCCTTGATCTTTT+GGG + chr3_3:80703746-80703765 Msa0476790:CDS 35.0%
! ATGTTCTCCTTGATCTTTTG+GGG + chr3_3:80703747-80703766 Msa0476790:CDS 35.0%
TATATCCTTGTCACCTTTCA+GGG - chr3_3:80703978-80703997 None:intergenic 35.0%
ATATATCCTTGTCACCTTTC+AGG - chr3_3:80703979-80703998 None:intergenic 35.0%
! GCTTCATGTTTGTTCTTTTC+CGG + chr3_3:80704201-80704220 Msa0476790:three_prime_UTR 35.0%
AAAGGGATTATGTTTGAGCT+AGG - chr3_3:80704228-80704247 None:intergenic 35.0%
!!! GAGAAAGAATGGTTTTGTTG+TGG - chr3_3:80700235-80700254 None:intergenic 35.0%
AAAGTAAATGCAAGAGAGAG+AGG - chr3_3:80700402-80700421 None:intergenic 35.0%
! TTTTCCAGGGAAAGAAAATG+AGG + chr3_3:80700609-80700628 Msa0476790:intron 35.0%
TTTCCAGGGAAAGAAAATGA+GGG + chr3_3:80700610-80700629 Msa0476790:intron 35.0%
! TAGGTTTGATGTATTTGCTG+CGG + chr3_3:80700651-80700670 Msa0476790:CDS 35.0%
AGAAGAAAAGATCCACTTGA+TGG + chr3_3:80700718-80700737 Msa0476790:CDS 35.0%
ATATCAGTGACCGTCATTAT+TGG + chr3_3:80700767-80700786 Msa0476790:CDS 35.0%
TATCAGTGACCGTCATTATT+GGG + chr3_3:80700768-80700787 Msa0476790:CDS 35.0%
GGTTAATAAGTGTAGACAAC+TGG - chr3_3:80701020-80701039 None:intergenic 35.0%
GTTAATCACGTCCAAAATCA+TGG - chr3_3:80701041-80701060 None:intergenic 35.0%
GACAGAAGTAACAAACAATG+AGG - chr3_3:80701252-80701271 None:intergenic 35.0%
TGAAGAATAACCATAAGGCT+CGG - chr3_3:80701281-80701300 None:intergenic 35.0%
AAATTGCGTGTTAACAGGAT+TGG + chr3_3:80701417-80701436 Msa0476790:intron 35.0%
!! ATGCTAGTATTGACGTTTCT+TGG + chr3_3:80701840-80701859 Msa0476790:CDS 35.0%
TAGAGAACAATGTAGTAGCA+AGG + chr3_3:80702330-80702349 Msa0476790:intron 35.0%
ATATTGGATCCACTCATTCA+TGG - chr3_3:80702492-80702511 None:intergenic 35.0%
CTGTATTTGCAGTAGGATAT+TGG - chr3_3:80702508-80702527 None:intergenic 35.0%
CATTCAATTATGTACCTGTG+TGG - chr3_3:80702786-80702805 None:intergenic 35.0%
!! TCTGTTCTGCATCATTTTTG+GGG + chr3_3:80702876-80702895 Msa0476790:intron 35.0%
TAGCACTCTTCAAAAGATTG+AGG - chr3_3:80703126-80703145 None:intergenic 35.0%
ACATGAATTTCAGATAAGGG+TGG - chr3_3:80703169-80703188 None:intergenic 35.0%
! ACCCTTATCTGAAATTCATG+TGG + chr3_3:80703168-80703187 Msa0476790:intron 35.0%
TTGAGGCTAAAAATCAACCA+AGG - chr3_3:80703267-80703286 None:intergenic 35.0%
CATTTATTCCAGCGGATATT+TGG - chr3_3:80703566-80703585 None:intergenic 35.0%
ATATCCGCTGGAATAAATGT+TGG + chr3_3:80703567-80703586 Msa0476790:CDS 35.0%
GTTACCAACATTTATTCCAG+CGG - chr3_3:80703574-80703593 None:intergenic 35.0%
CGATGGGGCATAATTATATA+AGG - chr3_3:80703598-80703617 None:intergenic 35.0%
TGTGAATGTTTCTCGAACAA+AGG - chr3_3:80703643-80703662 None:intergenic 35.0%
! TGATGTTCTCCTTGATCTTT+TGG + chr3_3:80703745-80703764 Msa0476790:CDS 35.0%
! GATGTTCTCCTTGATCTTTT+GGG + chr3_3:80703746-80703765 Msa0476790:CDS 35.0%
! ATGTTCTCCTTGATCTTTTG+GGG + chr3_3:80703747-80703766 Msa0476790:CDS 35.0%
TATATCCTTGTCACCTTTCA+GGG - chr3_3:80703978-80703997 None:intergenic 35.0%
ATATATCCTTGTCACCTTTC+AGG - chr3_3:80703979-80703998 None:intergenic 35.0%
! GCTTCATGTTTGTTCTTTTC+CGG + chr3_3:80704201-80704220 Msa0476790:three_prime_UTR 35.0%
AAAGGGATTATGTTTGAGCT+AGG - chr3_3:80704228-80704247 None:intergenic 35.0%
TAACTCAAACTTGGTACCAC+TGG - chr3_3:80700204-80700223 None:intergenic 40.0%
AGTGGAAGAGTGACATAGTA+AGG - chr3_3:80700339-80700358 None:intergenic 40.0%
TGACAAGGAAGAAGAAGAAG+TGG - chr3_3:80700357-80700376 None:intergenic 40.0%
! TTTCCCTCATTTTCTTTCCC+TGG - chr3_3:80700616-80700635 None:intergenic 40.0%
GGGAAAGAAAATGAGGGAAA+TGG + chr3_3:80700616-80700635 Msa0476790:intron 40.0%
AGGTTACAGCCCAATAATGA+CGG - chr3_3:80700780-80700799 None:intergenic 40.0%
TATTGAGCAAGGGTTGAAAG+AGG - chr3_3:80700800-80700819 None:intergenic 40.0%
CTTTCGCAACGAATTGTTAC+CGG + chr3_3:80700939-80700958 Msa0476790:intron 40.0%
GGATGTGCAGTGCTATATAT+TGG + chr3_3:80701438-80701457 Msa0476790:CDS 40.0%
GCAGTGCTATATATTGGACA+AGG + chr3_3:80701444-80701463 Msa0476790:CDS 40.0%
AACATCGACGTTGCAATATG+TGG + chr3_3:80701485-80701504 Msa0476790:CDS 40.0%
ACAGATATCAATGCTTCTGC+TGG + chr3_3:80701636-80701655 Msa0476790:CDS 40.0%
CAGATATCAATGCTTCTGCT+GGG + chr3_3:80701637-80701656 Msa0476790:CDS 40.0%
GAATATTGTGAGCCTGATAC+AGG + chr3_3:80701787-80701806 Msa0476790:intron 40.0%
!! CTGACTTGTTGCTGTTATTG+AGG + chr3_3:80701931-80701950 Msa0476790:intron 40.0%
TACGATCGCTGAGTGTAAAA+TGG - chr3_3:80702089-80702108 None:intergenic 40.0%
ACTGGCACCCTTATATTATG+TGG + chr3_3:80702215-80702234 Msa0476790:CDS 40.0%
AGCTAAGGGAAACTTACTTG+TGG - chr3_3:80702256-80702275 None:intergenic 40.0%
TGCTGTCACACTATCAAAAG+TGG - chr3_3:80702456-80702475 None:intergenic 40.0%
CAACAATGTTTCTTGTGCTG+TGG - chr3_3:80702564-80702583 None:intergenic 40.0%
TAGTACAGCGGCGTAAAATT+GGG - chr3_3:80702665-80702684 None:intergenic 40.0%
CATTGTCTATCTGTCATGTC+AGG - chr3_3:80702734-80702753 None:intergenic 40.0%
ACAGATAGACAATGTGACTC+TGG + chr3_3:80702740-80702759 Msa0476790:CDS 40.0%
TTGGGGTCTATCAAGAATCA+AGG + chr3_3:80702893-80702912 Msa0476790:intron 40.0%
TGAAATTCATGTGGATCCCA+TGG + chr3_3:80703177-80703196 Msa0476790:intron 40.0%
! ATATCTCTGATGGTGAAACC+TGG - chr3_3:80703506-80703525 None:intergenic 40.0%
ATGAACATTGTCCTGGTCTA+CGG + chr3_3:80703673-80703692 Msa0476790:CDS 40.0%
TTACTATAATGCCGTAGACC+AGG - chr3_3:80703687-80703706 None:intergenic 40.0%
ATACACACCCCAAAAGATCA+AGG - chr3_3:80703757-80703776 None:intergenic 40.0%
!!! TTGATCTTTTGGGGTGTGTA+TGG + chr3_3:80703756-80703775 Msa0476790:CDS 40.0%
AGTTCAAGTGCATGACTTGA+TGG - chr3_3:80703945-80703964 None:intergenic 40.0%
TTGTCACCTTTCAGGGATAT+GGG - chr3_3:80703971-80703990 None:intergenic 40.0%
TGAACTGGAAAAGGAGAATC+CGG + chr3_3:80704139-80704158 Msa0476790:three_prime_UTR 40.0%
CTCGTGTCTGATTCTTTATC+CGG - chr3_3:80704161-80704180 None:intergenic 40.0%
GATTATGTTTGAGCTAGGAC+CGG - chr3_3:80704223-80704242 None:intergenic 40.0%
TAACTCAAACTTGGTACCAC+TGG - chr3_3:80700204-80700223 None:intergenic 40.0%
AGTGGAAGAGTGACATAGTA+AGG - chr3_3:80700339-80700358 None:intergenic 40.0%
TGACAAGGAAGAAGAAGAAG+TGG - chr3_3:80700357-80700376 None:intergenic 40.0%
! TTTCCCTCATTTTCTTTCCC+TGG - chr3_3:80700616-80700635 None:intergenic 40.0%
GGGAAAGAAAATGAGGGAAA+TGG + chr3_3:80700616-80700635 Msa0476790:intron 40.0%
AGGTTACAGCCCAATAATGA+CGG - chr3_3:80700780-80700799 None:intergenic 40.0%
TATTGAGCAAGGGTTGAAAG+AGG - chr3_3:80700800-80700819 None:intergenic 40.0%
CTTTCGCAACGAATTGTTAC+CGG + chr3_3:80700939-80700958 Msa0476790:intron 40.0%
GGATGTGCAGTGCTATATAT+TGG + chr3_3:80701438-80701457 Msa0476790:CDS 40.0%
GCAGTGCTATATATTGGACA+AGG + chr3_3:80701444-80701463 Msa0476790:CDS 40.0%
AACATCGACGTTGCAATATG+TGG + chr3_3:80701485-80701504 Msa0476790:CDS 40.0%
ACAGATATCAATGCTTCTGC+TGG + chr3_3:80701636-80701655 Msa0476790:CDS 40.0%
CAGATATCAATGCTTCTGCT+GGG + chr3_3:80701637-80701656 Msa0476790:CDS 40.0%
GAATATTGTGAGCCTGATAC+AGG + chr3_3:80701787-80701806 Msa0476790:intron 40.0%
!! CTGACTTGTTGCTGTTATTG+AGG + chr3_3:80701931-80701950 Msa0476790:intron 40.0%
TACGATCGCTGAGTGTAAAA+TGG - chr3_3:80702089-80702108 None:intergenic 40.0%
ACTGGCACCCTTATATTATG+TGG + chr3_3:80702215-80702234 Msa0476790:CDS 40.0%
AGCTAAGGGAAACTTACTTG+TGG - chr3_3:80702256-80702275 None:intergenic 40.0%
TGCTGTCACACTATCAAAAG+TGG - chr3_3:80702456-80702475 None:intergenic 40.0%
CAACAATGTTTCTTGTGCTG+TGG - chr3_3:80702564-80702583 None:intergenic 40.0%
TAGTACAGCGGCGTAAAATT+GGG - chr3_3:80702665-80702684 None:intergenic 40.0%
CATTGTCTATCTGTCATGTC+AGG - chr3_3:80702734-80702753 None:intergenic 40.0%
ACAGATAGACAATGTGACTC+TGG + chr3_3:80702740-80702759 Msa0476790:CDS 40.0%
TTGGGGTCTATCAAGAATCA+AGG + chr3_3:80702893-80702912 Msa0476790:intron 40.0%
TGAAATTCATGTGGATCCCA+TGG + chr3_3:80703177-80703196 Msa0476790:intron 40.0%
! ATATCTCTGATGGTGAAACC+TGG - chr3_3:80703506-80703525 None:intergenic 40.0%
ATGAACATTGTCCTGGTCTA+CGG + chr3_3:80703673-80703692 Msa0476790:CDS 40.0%
TTACTATAATGCCGTAGACC+AGG - chr3_3:80703687-80703706 None:intergenic 40.0%
ATACACACCCCAAAAGATCA+AGG - chr3_3:80703757-80703776 None:intergenic 40.0%
!!! TTGATCTTTTGGGGTGTGTA+TGG + chr3_3:80703756-80703775 Msa0476790:CDS 40.0%
AGTTCAAGTGCATGACTTGA+TGG - chr3_3:80703945-80703964 None:intergenic 40.0%
TTGTCACCTTTCAGGGATAT+GGG - chr3_3:80703971-80703990 None:intergenic 40.0%
TGAACTGGAAAAGGAGAATC+CGG + chr3_3:80704139-80704158 Msa0476790:three_prime_UTR 40.0%
CTCGTGTCTGATTCTTTATC+CGG - chr3_3:80704161-80704180 None:intergenic 40.0%
GATTATGTTTGAGCTAGGAC+CGG - chr3_3:80704223-80704242 None:intergenic 40.0%
CAAACAGTGAGTGTGTGTGT+GGG - chr3_3:80700174-80700193 None:intergenic 45.0%
AACTTGGTACCACTGGCAAA+TGG - chr3_3:80700197-80700216 None:intergenic 45.0%
TCCTTGTCACAACTCACTTC+AGG + chr3_3:80700368-80700387 Msa0476790:CDS 45.0%
ACCTGAAGTGAGTTGTGACA+AGG - chr3_3:80700372-80700391 None:intergenic 45.0%
GGAAGTGGTGAGTTCTCATA+TGG - chr3_3:80700679-80700698 None:intergenic 45.0%
! CTAGTTCTCTCTGCAGCTAA+GGG - chr3_3:80700700-80700719 None:intergenic 45.0%
!! TCTAGTTCTCTCTGCAGCTA+AGG - chr3_3:80700701-80700720 None:intergenic 45.0%
ACTGCTGCAATGCTGAATAC+AGG - chr3_3:80701196-80701215 None:intergenic 45.0%
TATTCAGCATTGCAGCAGTC+TGG + chr3_3:80701197-80701216 Msa0476790:CDS 45.0%
!! ATTGCAGCAGTCTGGTTCTT+AGG + chr3_3:80701205-80701224 Msa0476790:CDS 45.0%
TGTCGTAAAACCGAGCCTTA+TGG + chr3_3:80701268-80701287 Msa0476790:CDS 45.0%
! GTATCAAGCTGATTCTGCTG+TGG + chr3_3:80701509-80701528 Msa0476790:CDS 45.0%
TTACCTTGCTCAAGCTAAGC+TGG + chr3_3:80701554-80701573 Msa0476790:CDS 45.0%
TATTGTGAGCCTGATACAGG+AGG + chr3_3:80701790-80701809 Msa0476790:intron 45.0%
! AATTGCAGCTTGGTAATCGC+AGG + chr3_3:80702179-80702198 Msa0476790:intron 45.0%
GCAGGATGGTTTCTTGTTAC+TGG + chr3_3:80702197-80702216 Msa0476790:CDS 45.0%
CATGTGTAGCCATGAATGAG+TGG + chr3_3:80702480-80702499 Msa0476790:CDS 45.0%
TCGAGAGCTGTATTTGCAGT+AGG - chr3_3:80702515-80702534 None:intergenic 45.0%
AGTACAGCGGCGTAAAATTG+GGG - chr3_3:80702664-80702683 None:intergenic 45.0%
GTAGTACAGCGGCGTAAAAT+TGG - chr3_3:80702666-80702685 None:intergenic 45.0%
CCGGATTGATTGTAGTACAG+CGG - chr3_3:80702677-80702696 None:intergenic 45.0%
CCGCTGTACTACAATCAATC+CGG + chr3_3:80702674-80702693 Msa0476790:CDS 45.0%
GTCTATCTGTCATGTCAGGA+CGG - chr3_3:80702730-80702749 None:intergenic 45.0%
AATCAGTTTCCGTGTGATGC+AGG + chr3_3:80703461-80703480 Msa0476790:intron 45.0%
TTCCGTGTGATGCAGGTATA+TGG + chr3_3:80703468-80703487 Msa0476790:intron 45.0%
TCCGTGTGATGCAGGTATAT+GGG + chr3_3:80703469-80703488 Msa0476790:intron 45.0%
TCCCATATACCTGCATCACA+CGG - chr3_3:80703473-80703492 None:intergenic 45.0%
ATATGGGAACTTTGTGTGCC+AGG + chr3_3:80703485-80703504 Msa0476790:CDS 45.0%
TGGGTCATGCATATCTCTGA+TGG - chr3_3:80703516-80703535 None:intergenic 45.0%
TCAGAGATATGCATGACCCA+AGG + chr3_3:80703516-80703535 Msa0476790:CDS 45.0%
TTGTAGCTCAACAAGCGATG+GGG - chr3_3:80703613-80703632 None:intergenic 45.0%
CTTGTAGCTCAACAAGCGAT+GGG - chr3_3:80703614-80703633 None:intergenic 45.0%
TCTTGTAGCTCAACAAGCGA+TGG - chr3_3:80703615-80703634 None:intergenic 45.0%
! GGTGTAAGTGCAAGTCTTGT+TGG - chr3_3:80703924-80703943 None:intergenic 45.0%
ACTTAGCCCATATCCCTGAA+AGG + chr3_3:80703962-80703981 Msa0476790:exon 45.0%
CTTGTCACCTTTCAGGGATA+TGG - chr3_3:80703972-80703991 None:intergenic 45.0%
CATATCCCTGAAAGGTGACA+AGG + chr3_3:80703970-80703989 Msa0476790:exon 45.0%
CAAACAGTGAGTGTGTGTGT+GGG - chr3_3:80700174-80700193 None:intergenic 45.0%
AACTTGGTACCACTGGCAAA+TGG - chr3_3:80700197-80700216 None:intergenic 45.0%
TCCTTGTCACAACTCACTTC+AGG + chr3_3:80700368-80700387 Msa0476790:CDS 45.0%
ACCTGAAGTGAGTTGTGACA+AGG - chr3_3:80700372-80700391 None:intergenic 45.0%
GGAAGTGGTGAGTTCTCATA+TGG - chr3_3:80700679-80700698 None:intergenic 45.0%
! CTAGTTCTCTCTGCAGCTAA+GGG - chr3_3:80700700-80700719 None:intergenic 45.0%
!! TCTAGTTCTCTCTGCAGCTA+AGG - chr3_3:80700701-80700720 None:intergenic 45.0%
ACTGCTGCAATGCTGAATAC+AGG - chr3_3:80701196-80701215 None:intergenic 45.0%
TATTCAGCATTGCAGCAGTC+TGG + chr3_3:80701197-80701216 Msa0476790:CDS 45.0%
!! ATTGCAGCAGTCTGGTTCTT+AGG + chr3_3:80701205-80701224 Msa0476790:CDS 45.0%
TGTCGTAAAACCGAGCCTTA+TGG + chr3_3:80701268-80701287 Msa0476790:CDS 45.0%
! GTATCAAGCTGATTCTGCTG+TGG + chr3_3:80701509-80701528 Msa0476790:CDS 45.0%
TTACCTTGCTCAAGCTAAGC+TGG + chr3_3:80701554-80701573 Msa0476790:CDS 45.0%
TATTGTGAGCCTGATACAGG+AGG + chr3_3:80701790-80701809 Msa0476790:intron 45.0%
! AATTGCAGCTTGGTAATCGC+AGG + chr3_3:80702179-80702198 Msa0476790:intron 45.0%
GCAGGATGGTTTCTTGTTAC+TGG + chr3_3:80702197-80702216 Msa0476790:CDS 45.0%
CATGTGTAGCCATGAATGAG+TGG + chr3_3:80702480-80702499 Msa0476790:CDS 45.0%
TCGAGAGCTGTATTTGCAGT+AGG - chr3_3:80702515-80702534 None:intergenic 45.0%
AGTACAGCGGCGTAAAATTG+GGG - chr3_3:80702664-80702683 None:intergenic 45.0%
GTAGTACAGCGGCGTAAAAT+TGG - chr3_3:80702666-80702685 None:intergenic 45.0%
CCGGATTGATTGTAGTACAG+CGG - chr3_3:80702677-80702696 None:intergenic 45.0%
CCGCTGTACTACAATCAATC+CGG + chr3_3:80702674-80702693 Msa0476790:CDS 45.0%
GTCTATCTGTCATGTCAGGA+CGG - chr3_3:80702730-80702749 None:intergenic 45.0%
AATCAGTTTCCGTGTGATGC+AGG + chr3_3:80703461-80703480 Msa0476790:intron 45.0%
TTCCGTGTGATGCAGGTATA+TGG + chr3_3:80703468-80703487 Msa0476790:intron 45.0%
TCCGTGTGATGCAGGTATAT+GGG + chr3_3:80703469-80703488 Msa0476790:intron 45.0%
TCCCATATACCTGCATCACA+CGG - chr3_3:80703473-80703492 None:intergenic 45.0%
ATATGGGAACTTTGTGTGCC+AGG + chr3_3:80703485-80703504 Msa0476790:CDS 45.0%
TGGGTCATGCATATCTCTGA+TGG - chr3_3:80703516-80703535 None:intergenic 45.0%
TCAGAGATATGCATGACCCA+AGG + chr3_3:80703516-80703535 Msa0476790:CDS 45.0%
TTGTAGCTCAACAAGCGATG+GGG - chr3_3:80703613-80703632 None:intergenic 45.0%
CTTGTAGCTCAACAAGCGAT+GGG - chr3_3:80703614-80703633 None:intergenic 45.0%
TCTTGTAGCTCAACAAGCGA+TGG - chr3_3:80703615-80703634 None:intergenic 45.0%
! GGTGTAAGTGCAAGTCTTGT+TGG - chr3_3:80703924-80703943 None:intergenic 45.0%
ACTTAGCCCATATCCCTGAA+AGG + chr3_3:80703962-80703981 Msa0476790:exon 45.0%
CTTGTCACCTTTCAGGGATA+TGG - chr3_3:80703972-80703991 None:intergenic 45.0%
CATATCCCTGAAAGGTGACA+AGG + chr3_3:80703970-80703989 Msa0476790:exon 45.0%
!!! TTTATTTTATAAATGAATTT+TGG + chr3_3:80700898-80700917 Msa0476790:intron 5.0%
!!! TATTTTAATTATATTAGAAT+GGG - chr3_3:80703081-80703100 None:intergenic 5.0%
!!! ATATTTTAATTATATTAGAA+TGG - chr3_3:80703082-80703101 None:intergenic 5.0%
!!! TTTATTTTATAAATGAATTT+TGG + chr3_3:80700898-80700917 Msa0476790:intron 5.0%
!!! TATTTTAATTATATTAGAAT+GGG - chr3_3:80703081-80703100 None:intergenic 5.0%
!!! ATATTTTAATTATATTAGAA+TGG - chr3_3:80703082-80703101 None:intergenic 5.0%
TGTGTGTGTGGGAGAGAAAG+AGG - chr3_3:80700163-80700182 None:intergenic 50.0%
GCAAACAGTGAGTGTGTGTG+TGG - chr3_3:80700175-80700194 None:intergenic 50.0%
! CACTGTTTGCCATTTGCCAG+TGG + chr3_3:80700185-80700204 Msa0476790:five_prime_UTR 50.0%
!! GCAGTCTGGTTCTTAGGCTT+TGG + chr3_3:80701211-80701230 Msa0476790:CDS 50.0%
! CAACCAGCTTAGCTTGAGCA+AGG - chr3_3:80701560-80701579 None:intergenic 50.0%
CTTGCTCAAGCTAAGCTGGT+TGG + chr3_3:80701558-80701577 Msa0476790:CDS 50.0%
GTACAGCGGCGTAAAATTGG+GGG - chr3_3:80702663-80702682 None:intergenic 50.0%
TCTGTCATGTCAGGACGGAA+CGG - chr3_3:80702725-80702744 None:intergenic 50.0%
! TTAGGTCCGACTCGATCAAG+GGG - chr3_3:80703055-80703074 None:intergenic 50.0%
! GTTAGGTCCGACTCGATCAA+GGG - chr3_3:80703056-80703075 None:intergenic 50.0%
! TGGAGAGAGACAAGGAGTGT+TGG - chr3_3:80703149-80703168 None:intergenic 50.0%
GATAAGGGTGGAGAGAGACA+AGG - chr3_3:80703157-80703176 None:intergenic 50.0%
GGTAGGGGTTAAACGTCCTT+GGG - chr3_3:80703535-80703554 None:intergenic 50.0%
AGGTAGGGGTTAAACGTCCT+TGG - chr3_3:80703536-80703555 None:intergenic 50.0%
!! AGTGCAAGTCTTGTTGGTGC+AGG - chr3_3:80703918-80703937 None:intergenic 50.0%
TGTGTGTGTGGGAGAGAAAG+AGG - chr3_3:80700163-80700182 None:intergenic 50.0%
GCAAACAGTGAGTGTGTGTG+TGG - chr3_3:80700175-80700194 None:intergenic 50.0%
! CACTGTTTGCCATTTGCCAG+TGG + chr3_3:80700185-80700204 Msa0476790:five_prime_UTR 50.0%
!! GCAGTCTGGTTCTTAGGCTT+TGG + chr3_3:80701211-80701230 Msa0476790:CDS 50.0%
! CAACCAGCTTAGCTTGAGCA+AGG - chr3_3:80701560-80701579 None:intergenic 50.0%
CTTGCTCAAGCTAAGCTGGT+TGG + chr3_3:80701558-80701577 Msa0476790:CDS 50.0%
GTACAGCGGCGTAAAATTGG+GGG - chr3_3:80702663-80702682 None:intergenic 50.0%
TCTGTCATGTCAGGACGGAA+CGG - chr3_3:80702725-80702744 None:intergenic 50.0%
! TTAGGTCCGACTCGATCAAG+GGG - chr3_3:80703055-80703074 None:intergenic 50.0%
! GTTAGGTCCGACTCGATCAA+GGG - chr3_3:80703056-80703075 None:intergenic 50.0%
! TGGAGAGAGACAAGGAGTGT+TGG - chr3_3:80703149-80703168 None:intergenic 50.0%
GATAAGGGTGGAGAGAGACA+AGG - chr3_3:80703157-80703176 None:intergenic 50.0%
GGTAGGGGTTAAACGTCCTT+GGG - chr3_3:80703535-80703554 None:intergenic 50.0%
AGGTAGGGGTTAAACGTCCT+TGG - chr3_3:80703536-80703555 None:intergenic 50.0%
!! AGTGCAAGTCTTGTTGGTGC+AGG - chr3_3:80703918-80703937 None:intergenic 50.0%
CTCTCTGCAGCTAAGGGAAG+TGG - chr3_3:80700694-80700713 None:intergenic 55.0%
! GCAGCTTGGTAATCGCAGGA+TGG + chr3_3:80702183-80702202 Msa0476790:intron 55.0%
CGACGATATACTGCCCTGTG+TGG + chr3_3:80702532-80702551 Msa0476790:CDS 55.0%
!! GCTGTGGCTTTGTCCACACA+GGG - chr3_3:80702548-80702567 None:intergenic 55.0%
!! TGCTGTGGCTTTGTCCACAC+AGG - chr3_3:80702549-80702568 None:intergenic 55.0%
TCGCAGAGGAGTGGCATCAA+GGG - chr3_3:80702701-80702720 None:intergenic 55.0%
ATCGCAGAGGAGTGGCATCA+AGG - chr3_3:80702702-80702721 None:intergenic 55.0%
GAACCTAAGCAACGCCACAC+AGG + chr3_3:80702769-80702788 Msa0476790:CDS 55.0%
GTACCTGTGTGGCGTTGCTT+AGG - chr3_3:80702775-80702794 None:intergenic 55.0%
TGGTCCAGCTCACGATGACT+CGG - chr3_3:80703006-80703025 None:intergenic 55.0%
! ACCACTCAACCTGCGGATTG+AGG + chr3_3:80703022-80703041 Msa0476790:intron 55.0%
! ACCTCAATCCGCAGGTTGAG+TGG - chr3_3:80703026-80703045 None:intergenic 55.0%
! ACTCAACCTGCGGATTGAGG+TGG + chr3_3:80703025-80703044 Msa0476790:intron 55.0%
! CTCAACCTGCGGATTGAGGT+GGG + chr3_3:80703026-80703045 Msa0476790:intron 55.0%
GGGTTACCCCTTGATCGAGT+CGG + chr3_3:80703046-80703065 Msa0476790:intron 55.0%
! GGTTAGGTCCGACTCGATCA+AGG - chr3_3:80703057-80703076 None:intergenic 55.0%
GGGGTGTGTATGGAAGAGAG+CGG + chr3_3:80703766-80703785 Msa0476790:CDS 55.0%
GTGTGTATGGAAGAGAGCGG+AGG + chr3_3:80703769-80703788 Msa0476790:CDS 55.0%
GGTGTAGGTGCACGTCTTGT+TGG - chr3_3:80703858-80703877 None:intergenic 55.0%
AGTGCAGGTGCACGTCTTGT+TGG - chr3_3:80703891-80703910 None:intergenic 55.0%
CTCTCTGCAGCTAAGGGAAG+TGG - chr3_3:80700694-80700713 None:intergenic 55.0%
! GCAGCTTGGTAATCGCAGGA+TGG + chr3_3:80702183-80702202 Msa0476790:intron 55.0%
CGACGATATACTGCCCTGTG+TGG + chr3_3:80702532-80702551 Msa0476790:CDS 55.0%
!! GCTGTGGCTTTGTCCACACA+GGG - chr3_3:80702548-80702567 None:intergenic 55.0%
!! TGCTGTGGCTTTGTCCACAC+AGG - chr3_3:80702549-80702568 None:intergenic 55.0%
TCGCAGAGGAGTGGCATCAA+GGG - chr3_3:80702701-80702720 None:intergenic 55.0%
ATCGCAGAGGAGTGGCATCA+AGG - chr3_3:80702702-80702721 None:intergenic 55.0%
GAACCTAAGCAACGCCACAC+AGG + chr3_3:80702769-80702788 Msa0476790:CDS 55.0%
GTACCTGTGTGGCGTTGCTT+AGG - chr3_3:80702775-80702794 None:intergenic 55.0%
TGGTCCAGCTCACGATGACT+CGG - chr3_3:80703006-80703025 None:intergenic 55.0%
! ACCACTCAACCTGCGGATTG+AGG + chr3_3:80703022-80703041 Msa0476790:intron 55.0%
! ACCTCAATCCGCAGGTTGAG+TGG - chr3_3:80703026-80703045 None:intergenic 55.0%
! ACTCAACCTGCGGATTGAGG+TGG + chr3_3:80703025-80703044 Msa0476790:intron 55.0%
! CTCAACCTGCGGATTGAGGT+GGG + chr3_3:80703026-80703045 Msa0476790:intron 55.0%
GGGTTACCCCTTGATCGAGT+CGG + chr3_3:80703046-80703065 Msa0476790:intron 55.0%
! GGTTAGGTCCGACTCGATCA+AGG - chr3_3:80703057-80703076 None:intergenic 55.0%
GGGGTGTGTATGGAAGAGAG+CGG + chr3_3:80703766-80703785 Msa0476790:CDS 55.0%
GTGTGTATGGAAGAGAGCGG+AGG + chr3_3:80703769-80703788 Msa0476790:CDS 55.0%
GGTGTAGGTGCACGTCTTGT+TGG - chr3_3:80703858-80703877 None:intergenic 55.0%
AGTGCAGGTGCACGTCTTGT+TGG - chr3_3:80703891-80703910 None:intergenic 55.0%
GTGAGCCTGATACAGGAGGC+TGG + chr3_3:80701794-80701813 Msa0476790:intron 60.0%
GAGGAGTGGCATCAAGGGAC+CGG - chr3_3:80702696-80702715 None:intergenic 60.0%
GTCCAGCTCACGATGACTCG+GGG - chr3_3:80703004-80703023 None:intergenic 60.0%
GGTCCAGCTCACGATGACTC+GGG - chr3_3:80703005-80703024 None:intergenic 60.0%
GAGCTGGACCACTCAACCTG+CGG + chr3_3:80703015-80703034 Msa0476790:intron 60.0%
GGTAACCCACCTCAATCCGC+AGG - chr3_3:80703034-80703053 None:intergenic 60.0%
GTTGGTGCAGGAGCTCGTGT+AGG - chr3_3:80703840-80703859 None:intergenic 60.0%
! GGTGCACGTCTTGTTGGTGC+AGG - chr3_3:80703852-80703871 None:intergenic 60.0%
GTTGGTGCAGGTGCAGGTGT+AGG - chr3_3:80703873-80703892 None:intergenic 60.0%
! CGTCTTGTTGGTGCAGGTGC+AGG - chr3_3:80703879-80703898 None:intergenic 60.0%
! GGTGCACGTCTTGTTGGTGC+AGG - chr3_3:80703852-80703871 None:intergenic 60.0%
GTTGGTGCAGGTGCAAGTGC+AGG - chr3_3:80703906-80703925 None:intergenic 60.0%
GTGAGCCTGATACAGGAGGC+TGG + chr3_3:80701794-80701813 Msa0476790:intron 60.0%
GAGGAGTGGCATCAAGGGAC+CGG - chr3_3:80702696-80702715 None:intergenic 60.0%
GTCCAGCTCACGATGACTCG+GGG - chr3_3:80703004-80703023 None:intergenic 60.0%
GGTCCAGCTCACGATGACTC+GGG - chr3_3:80703005-80703024 None:intergenic 60.0%
GAGCTGGACCACTCAACCTG+CGG + chr3_3:80703015-80703034 Msa0476790:intron 60.0%
GGTAACCCACCTCAATCCGC+AGG - chr3_3:80703034-80703053 None:intergenic 60.0%
GTTGGTGCAGGAGCTCGTGT+AGG - chr3_3:80703840-80703859 None:intergenic 60.0%
! GGTGCACGTCTTGTTGGTGC+AGG - chr3_3:80703852-80703871 None:intergenic 60.0%
GTTGGTGCAGGTGCAGGTGT+AGG - chr3_3:80703873-80703892 None:intergenic 60.0%
! CGTCTTGTTGGTGCAGGTGC+AGG - chr3_3:80703879-80703898 None:intergenic 60.0%
! GGTGCACGTCTTGTTGGTGC+AGG - chr3_3:80703852-80703871 None:intergenic 60.0%
GTTGGTGCAGGTGCAAGTGC+AGG - chr3_3:80703906-80703925 None:intergenic 60.0%
GAGCGCCAGCCTCCTGTATC+AGG - chr3_3:80701802-80701821 None:intergenic 65.0%
CGGAACGGATCGCAGAGGAG+TGG - chr3_3:80702710-80702729 None:intergenic 65.0%
CAGGACGGAACGGATCGCAG+AGG - chr3_3:80702715-80702734 None:intergenic 65.0%
GACCCCGAGTCATCGTGAGC+TGG + chr3_3:80702999-80703018 Msa0476790:intron 65.0%
GAGCGCCAGCCTCCTGTATC+AGG - chr3_3:80701802-80701821 None:intergenic 65.0%
CGGAACGGATCGCAGAGGAG+TGG - chr3_3:80702710-80702729 None:intergenic 65.0%
CAGGACGGAACGGATCGCAG+AGG - chr3_3:80702715-80702734 None:intergenic 65.0%
GACCCCGAGTCATCGTGAGC+TGG + chr3_3:80702999-80703018 Msa0476790:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 80700138 80704255 80700138 ID=Msa0476790;Name=Msa0476790
chr3_3 mRNA 80700138 80704255 80700138 ID=Msa0476790-mRNA-1;Parent=Msa0476790;Name=Msa0476790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=146|1|1|1|1|1|9|275|579
chr3_3 exon 80700138 80700389 80700138 ID=Msa0476790-mRNA-1:exon:22136;Parent=Msa0476790-mRNA-1
chr3_3 exon 80700617 80700792 80700617 ID=Msa0476790-mRNA-1:exon:22137;Parent=Msa0476790-mRNA-1
chr3_3 exon 80701172 80701353 80701172 ID=Msa0476790-mRNA-1:exon:22138;Parent=Msa0476790-mRNA-1
chr3_3 exon 80701434 80701718 80701434 ID=Msa0476790-mRNA-1:exon:22139;Parent=Msa0476790-mRNA-1
chr3_3 exon 80701809 80701867 80701809 ID=Msa0476790-mRNA-1:exon:22140;Parent=Msa0476790-mRNA-1
chr3_3 exon 80701987 80702023 80701987 ID=Msa0476790-mRNA-1:exon:22141;Parent=Msa0476790-mRNA-1
chr3_3 exon 80702187 80702258 80702187 ID=Msa0476790-mRNA-1:exon:22142;Parent=Msa0476790-mRNA-1
chr3_3 exon 80702466 80702790 80702466 ID=Msa0476790-mRNA-1:exon:22143;Parent=Msa0476790-mRNA-1
chr3_3 exon 80703483 80704255 80703483 ID=Msa0476790-mRNA-1:exon:22144;Parent=Msa0476790-mRNA-1
chr3_3 five_prime_UTR 80700138 80700283 80700138 ID=Msa0476790-mRNA-1:five_prime_utr;Parent=Msa0476790-mRNA-1
chr3_3 CDS 80700284 80700389 80700284 ID=Msa0476790-mRNA-1:cds;Parent=Msa0476790-mRNA-1
chr3_3 CDS 80700617 80700792 80700617 ID=Msa0476790-mRNA-1:cds;Parent=Msa0476790-mRNA-1
chr3_3 CDS 80701172 80701353 80701172 ID=Msa0476790-mRNA-1:cds;Parent=Msa0476790-mRNA-1
chr3_3 CDS 80701434 80701718 80701434 ID=Msa0476790-mRNA-1:cds;Parent=Msa0476790-mRNA-1
chr3_3 CDS 80701809 80701867 80701809 ID=Msa0476790-mRNA-1:cds;Parent=Msa0476790-mRNA-1
chr3_3 CDS 80701987 80702023 80701987 ID=Msa0476790-mRNA-1:cds;Parent=Msa0476790-mRNA-1
chr3_3 CDS 80702187 80702258 80702187 ID=Msa0476790-mRNA-1:cds;Parent=Msa0476790-mRNA-1
chr3_3 CDS 80702466 80702790 80702466 ID=Msa0476790-mRNA-1:cds;Parent=Msa0476790-mRNA-1
chr3_3 CDS 80703483 80703980 80703483 ID=Msa0476790-mRNA-1:cds;Parent=Msa0476790-mRNA-1
chr3_3 three_prime_UTR 80703981 80704255 80703981 ID=Msa0476790-mRNA-1:three_prime_utr;Parent=Msa0476790-mRNA-1
Gene Sequence

>Msa0476790

ATGTTTTCTAGTTACCAGCTACTTCATTTTTGTTTTCTACTCACATTTTTCTCCTTACTATGTCACTCTTCCACTTCTTCTTCTTCCTTGTCACAACTCACTTCAGGGAAAGAAAATGAGGGAAATGGTGTAGTATTTTCTAGGTTTGATGTATTTGCTGCGGCACCATATGAGAACTCACCACTTCCCTTAGCTGCAGAGAGAACTAGAAGAAAAGATCCACTTGATGGCTTCAATAAATACATAAGTGGATGGAATATCAGTGACCGTCATTATTGGGCTTCAGTGGCATATACAGCAGTTCCTGTATTCAGCATTGCAGCAGTCTGGTTCTTAGGCTTTGGCTTATGTTTATTACTCCTCATTGTTTGTTACTTCTGTCGTAAAACCGAGCCTTATGGTTATTCTTCAACATACTATGCACTTTCCCTTATTCTCCTCATATTGTTCACATTTATAACACTGATTGGATGTGCAGTGCTATATATTGGACAAGGTAGTTTTCATAGAAGCACAACATCGACGTTGCAATATGTGGTGTATCAAGCTGATTCTGCTGTGGATAAACTAAAGAATGTTTCTGATTACCTTGCTCAAGCTAAGCTGGTTGGAATCGATCGAGTTTTTCTTCCCGCTAATGTTCAAACAGATATTGATGCGGCAGAAACAGATATCAATGCTTCTGCTGGGACAATTTCTGATAAAACAAAAGAGAATTCAGACAACATACAAGATCTCTTAGATTCTGTGAGGCTGGCGCTCATCATAATAGCTGCAGTTATGCTAGTATTGACGTTTCTTGGATTTCTGTTCTCAATTTTCGGAATGCAAGTCCTTGTGTACATCTTGGTAATCGCAGGATGGTTTCTTGTTACTGGCACCCTTATATTATGTGGTTTGTTCCTTATTCTCCACAATGTGACAGCAGATACATGTGTAGCCATGAATGAGTGGATCCAATATCCTACTGCAAATACAGCTCTCGACGATATACTGCCCTGTGTGGACAAAGCCACAGCACAAGAAACATTGTTGAAAAGCAAAGAAGTAACTTCTGAACTAGTTAACTTGGTGAACCAAGTTATTACTAATGTCTCTAACATAAATTTTGCCCCCAATTTTACGCCGCTGTACTACAATCAATCCGGTCCCTTGATGCCACTCCTCTGCGATCCGTTCCGTCCTGACATGACAGATAGACAATGTGACTCTGGTGAAGTGAACCTAAGCAACGCCACACAGGTATATGGGAACTTTGTGTGCCAGGTTTCACCATCAGAGATATGCATGACCCAAGGACGTTTAACCCCTACCTTTTATAACCAAATATCCGCTGGAATAAATGTTGGTAACGCCTTATATAATTATGCCCCATCGCTTGTTGAGCTACAAGACTGCACCTTTGTTCGAGAAACATTCACAGATATATACAATGAACATTGTCCTGGTCTACGGCATTATAGTAAATTGATTTATATTGGATTAATAATGGTCTCTTTTGCTGTGATGTTCTCCTTGATCTTTTGGGGTGTGTATGGAAGAGAGCGGAGGCATCGTTTGTATACACAAGAGTCTAAAGATTCAACACTAGTAACTCCTACACGAGCTCCTGCACCAACAAGACGTGCACCTACACCTGCACCTGCACCAACAAGACGTGCACCTGCACTTGCACCTGCACCAACAAGACTTGCACTTACACCATCAAGTCATGCACTTGAACTTAGCCCATATCCCTGA

Protein sequence

>Msa0476790

MFSSYQLLHFCFLLTFFSLLCHSSTSSSSLSQLTSGKENEGNGVVFSRFDVFAAAPYENSPLPLAAERTRRKDPLDGFNKYISGWNISDRHYWASVAYTAVPVFSIAAVWFLGFGLCLLLLIVCYFCRKTEPYGYSSTYYALSLILLILFTFITLIGCAVLYIGQGSFHRSTTSTLQYVVYQADSAVDKLKNVSDYLAQAKLVGIDRVFLPANVQTDIDAAETDINASAGTISDKTKENSDNIQDLLDSVRLALIIIAAVMLVLTFLGFLFSIFGMQVLVYILVIAGWFLVTGTLILCGLFLILHNVTADTCVAMNEWIQYPTANTALDDILPCVDKATAQETLLKSKEVTSELVNLVNQVITNVSNINFAPNFTPLYYNQSGPLMPLLCDPFRPDMTDRQCDSGEVNLSNATQVYGNFVCQVSPSEICMTQGRLTPTFYNQISAGINVGNALYNYAPSLVELQDCTFVRETFTDIYNEHCPGLRHYSKLIYIGLIMVSFAVMFSLIFWGVYGRERRHRLYTQESKDSTLVTPTRAPAPTRRAPTPAPAPTRRAPALAPAPTRLALTPSSHALELSPYP*