AlfalfaGEDB | Msa0521170

M. sativa cultivar zhongmu-4 / Msa0521170

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0521170	XP_003603340.2	96.546	579	15	2	1	578	1	575	0.0	1140

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0521170	G7JAF2	96.546	579	15	2	1	578	1	575	0.0	1140

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0057540	Msa0521170	0.802510	5.422425e-49	-8.615850e-47
Msa0092950	Msa0521170	0.983035	1.172863e-156	-8.615850e-47
Msa0432690	Msa0521170	0.809547	1.793074e-50	-8.615850e-47
Msa0464050	Msa0521170	0.801136	1.038164e-48	-8.615850e-47
Msa0466520	Msa0521170	0.814585	1.429689e-51	-8.615850e-47
Msa0476790	Msa0521170	0.988819	1.537700e-175	-8.615850e-47
Msa0513080	Msa0521170	0.808296	3.320118e-50	-8.615850e-47
Msa0521170	Msa0521320	0.827792	1.286523e-54	-8.615850e-47
Msa0521170	Msa0612520	0.809380	1.947245e-50	-8.615850e-47
Msa0521170	Msa0829080	0.990837	1.435977e-184	-8.615850e-47

Showing 1 to 10 of 19 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0521170	MtrunA17_Chr3g0137351	96.546	579	15	2	1	578	1	575	0.0	1140
Msa0521170	MtrunA17_Chr2g0304631	61.588	466	179	0	58	523	59	524	0.0	587
Msa0521170	MtrunA17_Chr1g0208531	43.460	474	265	3	52	524	62	533	8.97e-140	417
Msa0521170	MtrunA17_Chr4g0065031	44.578	249	137	1	57	305	67	314	1.07e-64	214
Msa0521170	MtrunA17_Chr4g0065021	45.972	211	108	1	314	524	1	205	2.59e-60	199
Msa0521170	MtrunA17_Chr2g0329621	23.579	475	307	12	66	516	44	486	2.95e-40	153
Msa0521170	MtrunA17_Chr5g0401081	23.191	470	302	17	69	510	42	480	3.58e-18	87.8

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0521170	AT2G25270.1	58.442	462	192	0	57	518	66	527	0.0	605
Msa0521170	AT2G12400.1	59.494	474	192	0	50	523	54	527	0.0	570
Msa0521170	AT1G80540.3	46.154	468	248	3	61	524	18	485	2.17e-135	403
Msa0521170	AT1G80540.1	46.154	468	248	3	61	524	64	531	2.22e-135	405
Msa0521170	AT1G71110.1	42.857	476	258	5	61	527	66	536	3.99e-133	400
Msa0521170	AT1G80540.2	45.623	377	203	2	150	524	2	378	1.27e-106	326
Msa0521170	AT5G67550.1	23.593	462	312	16	66	503	35	479	4.79e-25	109

Showing 1 to 7 of 7 entries

Previous1Next

Find 143 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTACTTGTGGAGAATA+AGG	0.324746	3_4:-73814560	None:intergenic
AAAGGGATTATGTTTGAGCT+AGG	0.525254	3_4:-73820403	None:intergenic
AACATAAAGTGGAGAAAGAA+TGG	0.463953	3_4:-73812562	None:intergenic
AACATCGACGTTGCAATATG+TGG	0.549172	3_4:+73813801	Msa0521170:CDS
AACTTCTGAACTAGTTAACT+TGG	0.502064	3_4:+73814914	Msa0521170:CDS
AACTTGGTACCACTGGCAAA+TGG	0.520300	3_4:-73812513	None:intergenic
AAGAGGTTACAGCCCAATAA+TGG	0.427690	3_4:-73813096	None:intergenic
AATATCTGTTTGAACATTAG+CGG	0.550951	3_4:-73813917	None:intergenic
AATTGCAGCTTGGTAATCGC+AGG	0.576626	3_4:+73814495	Msa0521170:intron
ACAGATAGACAATGTGACTC+TGG	0.622158	3_4:+73815056	Msa0521170:CDS

Showing 1 to 10 of 143 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTGTATTCTTAACTCAAACT+TGG	-	chr3_4:73812532-73812551	None:intergenic	30.0%
AACATAAAGTGGAGAAAGAA+TGG	-	chr3_4:73812565-73812584	None:intergenic	30.0%
GAAAACAAAAATGAAGTAGC+TGG	-	chr3_4:73812620-73812639	None:intergenic	30.0%
TAGACAATGCAGGATATTTA+TGG	+	chr3_4:73812806-73812825	Msa0521170:intron	30.0%
CCTGGAAAAATGAAAAGAAA+AGG	-	chr3_4:73812914-73812933	None:intergenic	30.0%
TATTTATTGAAGCCATCAAG+TGG	-	chr3_4:73813049-73813068	None:intergenic	30.0%
GGCTTCAATAAATACATAAG+TGG	+	chr3_4:73813055-73813074	Msa0521170:CDS	30.0%
CAAAAAGGAAAAATAGTGAG+TGG	-	chr3_4:73813458-73813477	None:intergenic	30.0%
ACTGACTGTATTCAACAAAA+AGG	-	chr3_4:73813473-73813492	None:intergenic	30.0%
GAACAATATGAGGAGAATAA+GGG	-	chr3_4:73813636-73813655	None:intergenic	30.0%

Showing 1 to 10 of 486 entries

Previous1 2 3 4 5…49Next

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	73812457	73820433	73812457	ID=Msa0521170;Name=Msa0521170
chr3_4	mRNA	73812457	73820433	73812457	ID=Msa0521170-mRNA-1;Parent=Msa0521170;Name=Msa0521170-mRNA-1;_AED=0.06;_eAED=0.06;_QI=146\|1\|1\|1\|0.88\|0.8\|10\|275\|578
chr3_4	exon	73812457	73812705	73812457	ID=Msa0521170-mRNA-1:exon:20770;Parent=Msa0521170-mRNA-1
chr3_4	exon	73812933	73813108	73812933	ID=Msa0521170-mRNA-1:exon:20771;Parent=Msa0521170-mRNA-1
chr3_4	exon	73813488	73813669	73813488	ID=Msa0521170-mRNA-1:exon:20772;Parent=Msa0521170-mRNA-1
chr3_4	exon	73813750	73814034	73813750	ID=Msa0521170-mRNA-1:exon:20773;Parent=Msa0521170-mRNA-1
chr3_4	exon	73814125	73814183	73814125	ID=Msa0521170-mRNA-1:exon:20774;Parent=Msa0521170-mRNA-1
chr3_4	exon	73814303	73814339	73814303	ID=Msa0521170-mRNA-1:exon:20775;Parent=Msa0521170-mRNA-1
chr3_4	exon	73814503	73814574	73814503	ID=Msa0521170-mRNA-1:exon:20776;Parent=Msa0521170-mRNA-1
chr3_4	exon	73814782	73815106	73814782	ID=Msa0521170-mRNA-1:exon:20777;Parent=Msa0521170-mRNA-1
chr3_4	exon	73815799	73816535	73815799	ID=Msa0521170-mRNA-1:exon:20778;Parent=Msa0521170-mRNA-1
chr3_4	exon	73820398	73820433	73820398	ID=Msa0521170-mRNA-1:exon:20779;Parent=Msa0521170-mRNA-1
chr3_4	five_prime_UTR	73812457	73812602	73812457	ID=Msa0521170-mRNA-1:five_prime_utr;Parent=Msa0521170-mRNA-1
chr3_4	CDS	73812603	73812705	73812603	ID=Msa0521170-mRNA-1:cds;Parent=Msa0521170-mRNA-1
chr3_4	CDS	73812933	73813108	73812933	ID=Msa0521170-mRNA-1:cds;Parent=Msa0521170-mRNA-1
chr3_4	CDS	73813488	73813669	73813488	ID=Msa0521170-mRNA-1:cds;Parent=Msa0521170-mRNA-1
chr3_4	CDS	73813750	73814034	73813750	ID=Msa0521170-mRNA-1:cds;Parent=Msa0521170-mRNA-1
chr3_4	CDS	73814125	73814183	73814125	ID=Msa0521170-mRNA-1:cds;Parent=Msa0521170-mRNA-1
chr3_4	CDS	73814303	73814339	73814303	ID=Msa0521170-mRNA-1:cds;Parent=Msa0521170-mRNA-1
chr3_4	CDS	73814503	73814574	73814503	ID=Msa0521170-mRNA-1:cds;Parent=Msa0521170-mRNA-1
chr3_4	CDS	73814782	73815106	73814782	ID=Msa0521170-mRNA-1:cds;Parent=Msa0521170-mRNA-1
chr3_4	CDS	73815799	73816296	73815799	ID=Msa0521170-mRNA-1:cds;Parent=Msa0521170-mRNA-1
chr3_4	three_prime_UTR	73816297	73816535	73816297	ID=Msa0521170-mRNA-1:three_prime_utr;Parent=Msa0521170-mRNA-1
chr3_4	three_prime_UTR	73820398	73820433	73820398	ID=Msa0521170-mRNA-1:three_prime_utr;Parent=Msa0521170-mRNA-1

Gene Sequence

>Msa0521170

ATGTTTTCTAGTTACCAGCTACTTCATTTTTGTTTTCTACTCACATTTTTCTCCTTACTATGTCACTCTTCCACTTCTTCTTCCTTGTCACAACTCACTTCAGGGAAAGAAAATGAGGGAAATGGTGTAGTATTTTCTAGGTTTGATGTATTTGCTGCGGCACCATATGAGAACTCACCACTTCCCTTAGCTGCAGAGAGAACTAGAAGAAAAGATCCACTTGATGGCTTCAATAAATACATAAGTGGATGGAATATCAGTGACCGCCATTATTGGGCTTCAGTGGCATATACAGCAGTTCCTGTATTCAGCATTGCAGCAGTCTGGTTCTTAGGCTTTGGCTTATGTTTATTACTCCTCATTGTTTGTTACTTCTGTCGTAAAACCGAGCCTTATGGTTATTCTTCAACATACTATGCACTTTCCCTTATTCTCCTCATATTGTTCACATTTATAACACTGATTGGATGTGCAGTGCTATATATTGGACAAGGTAGTTTTCATAGAAGCACAACATCGACGTTGCAATATGTGGTGTATCAAGCTGATTCTGCTGTGGATAAACTAAAGAATGTTTCTGATTACCTTGCTCAAGCTAAGCTGGTTGGAATCGATCGAGTTTTTCTTCCCGCTAATGTTCAAACAGATATTGATGCGGCAGAAACAGATATCAATGCTTCTGCTGGGACAATTTCTGATAAAACAAAAGAGAATTCAGACAACATACAAGATCTCTTAGATTCTGTGAGGCTGGCGCTCATCATAATAGCTGCAGTTATGCTAGTATTGACGTTTCTTGGATTTCTGTTCTCAATTTTCGGAATGCAAGTCCTTGTGTACATCTTGGTAATCGCAGGATGGTTTCTTGTTACTGGCACCCTTATATTATGTGGTTTGTTCCTTATTCTCCACAATGTGACAGCAGATACATGTGTAGCCATGAATGAGTGGATCCAATATCCTACTGCAAATACAGCTCTCGACGATATACTGCCCTGTGTGGACAAAGCCACAGCACAAGAAACATTGTTGAAAAGCAAAGAAGTAACTTCTGAACTAGTTAACTTGGTGAACCAAGTTATTACTAATGTCTCTAACATAAATTTTGCCCCCAATTTTACGCCGCTGTACTACAATCAATCCGGTCCCTTGATGCCACTCCTCTGCGATCCGTTCCGTCCTGACATGACAGATAGACAATGTGACTCTGGTGAAGTGAACCTAAGCAACGCCACACAGGTATATGGGAACTTTGTGTGCCAGGTTTCACCATCAGAGATATGCATGACCCAAGGACGTTTAACCCCTACCTTTTATAACCAAATATCCGCTGGAATAAATGTTGGTAACGCCTTATATAATTATGCCCCATCGCTTGTTGAGCTACAAGACTGCACCTTTGTTCGAGAAACATTCACAGATATATACAATGAACATTGTCCTGGTCTACGGCATTATAGTAAATTGATTTATATTGGATTAATAATGGTCTCTTTTGCTGTGATGTTCTCCTTGATCTTTTGGGGTGTGTATGGAAGAGAGCGGAGGCATCGTTTGTATACACAAGAGTCTAAAGATTCAACACTAGTAACTCCTACACGAGCTCCTGCACCAACAAGACGTGCACCTACACCTGCACCTGCACCAACAAGACGTGCACCTGCACTTGCACCTGCACCAACAAGACTTGCACTTACACCATCAAGTCATGCACTTGAACTTAGCCCATATCCCTGA

Protein sequence

>Msa0521170

MFSSYQLLHFCFLLTFFSLLCHSSTSSSLSQLTSGKENEGNGVVFSRFDVFAAAPYENSPLPLAAERTRRKDPLDGFNKYISGWNISDRHYWASVAYTAVPVFSIAAVWFLGFGLCLLLLIVCYFCRKTEPYGYSSTYYALSLILLILFTFITLIGCAVLYIGQGSFHRSTTSTLQYVVYQADSAVDKLKNVSDYLAQAKLVGIDRVFLPANVQTDIDAAETDINASAGTISDKTKENSDNIQDLLDSVRLALIIIAAVMLVLTFLGFLFSIFGMQVLVYILVIAGWFLVTGTLILCGLFLILHNVTADTCVAMNEWIQYPTANTALDDILPCVDKATAQETLLKSKEVTSELVNLVNQVITNVSNINFAPNFTPLYYNQSGPLMPLLCDPFRPDMTDRQCDSGEVNLSNATQVYGNFVCQVSPSEICMTQGRLTPTFYNQISAGINVGNALYNYAPSLVELQDCTFVRETFTDIYNEHCPGLRHYSKLIYIGLIMVSFAVMFSLIFWGVYGRERRHRLYTQESKDSTLVTPTRAPAPTRRAPTPAPAPTRRAPALAPAPTRLALTPSSHALELSPYP*