AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1124470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124470 MtrunA17_Chr7g0264891 97.228 469 13 0 1 469 1 469 0.0 954
Msa1124470 MtrunA17_Chr1g0180381 74.840 469 105 5 1 457 1 468 0.0 720
Msa1124470 MtrunA17_Chr1g0210321 68.116 414 129 2 1 412 1 413 0.0 609
Msa1124470 MtrunA17_Chr6g0458201 62.274 387 145 1 26 412 17 402 0.0 523
Msa1124470 MtrunA17_Chr1g0169731 61.869 396 150 1 15 410 52 446 0.0 518
Msa1124470 MtrunA17_Chr4g0058051 68.915 341 105 1 35 375 28 367 0.0 513
Msa1124470 MtrunA17_Chr7g0237761 63.298 376 137 1 35 410 66 440 2.12e-177 504
Msa1124470 MtrunA17_Chr3g0116521 68.915 341 105 1 35 375 28 367 9.26e-173 491
Msa1124470 MtrunA17_Chr3g0123321 62.097 372 137 2 35 406 28 395 1.31e-161 462
Msa1124470 MtrunA17_Chr3g0123331 56.836 373 159 2 35 406 27 398 6.16e-146 423
Msa1124470 MtrunA17_Chr4g0060211 52.770 379 171 4 34 406 50 426 1.55e-143 417
Msa1124470 MtrunA17_Chr5g0416041 55.643 381 161 3 34 406 61 441 2.91e-143 417
Msa1124470 MtrunA17_Chr6g0452861 53.247 385 168 3 34 406 61 445 1.32e-142 416
Msa1124470 MtrunA17_Chr5g0416061 56.250 352 147 2 34 378 61 412 2.47e-140 410
Msa1124470 MtrunA17_Chr8g0362561 54.958 353 151 2 62 406 95 447 4.17e-140 410
Msa1124470 MtrunA17_Chr2g0288921 57.061 347 145 4 66 411 63 406 2.49e-134 393
Msa1124470 MtrunA17_Chr7g0216581 50.000 394 176 3 34 406 50 443 6.59e-131 386
Msa1124470 MtrunA17_Chr4g0075231 55.263 342 149 4 66 406 39 377 2.19e-129 380
Msa1124470 MtrunA17_Chr8g0373761 43.840 349 188 6 63 406 39 384 2.64e-90 280
Msa1124470 MtrunA17_Chr8g0373721 41.484 364 202 7 48 406 27 384 5.72e-88 274
Msa1124470 MtrunA17_Chr3g0089181 41.803 366 202 8 46 406 6 365 2.18e-85 266
Msa1124470 MtrunA17_Chr8g0373731 42.033 364 200 7 48 406 27 384 5.35e-81 256
Msa1124470 MtrunA17_Chr8g0373701 39.835 364 208 8 48 406 82 439 3.75e-79 253
Msa1124470 MtrunA17_Chr5g0403391 41.436 362 201 9 50 406 28 383 5.14e-75 240
Msa1124470 MtrunA17_Chr5g0414541 41.160 362 202 8 50 406 28 383 7.23e-75 240
Msa1124470 MtrunA17_Chr4g0031851 43.607 305 166 5 105 406 28 329 1.80e-74 238
Msa1124470 MtrunA17_Chr5g0403481 41.429 350 197 6 66 410 41 387 3.71e-73 236
Msa1124470 MtrunA17_Chr5g0403461 41.429 350 197 6 66 410 41 387 3.71e-73 236
Msa1124470 MtrunA17_Chr5g0403491 41.429 350 197 6 66 410 41 387 3.71e-73 236
Msa1124470 MtrunA17_Chr5g0403411 41.329 346 195 7 66 406 41 383 4.05e-72 233
Msa1124470 MtrunA17_Chr1g0183941 42.164 268 151 3 141 406 1 266 1.17e-64 209
Msa1124470 MtrunA17_Chr3g0113551 66.929 127 42 0 208 334 158 284 1.68e-55 187
Msa1124470 MtrunA17_Chr6g0481851 36.042 283 124 6 99 379 6 233 2.99e-43 153
Msa1124470 MtrunA17_Chr2g0288901 51.678 149 67 3 260 407 5 149 3.82e-43 149
Msa1124470 MtrunA17_Chr1g0212931 37.113 291 157 6 80 369 10 275 4.23e-42 152
Msa1124470 MtrunA17_Chr2g0288911 56.557 122 52 1 141 261 1 122 6.19e-40 140
Msa1124470 MtrunA17_Chr1g0182021 35.714 336 178 8 85 410 64 371 9.02e-37 139
Msa1124470 MtrunA17_Chr1g0183951 38.824 85 46 3 47 129 26 106 1.21e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124470 AT3G53190.1 74.678 466 108 6 1 458 2 465 0.0 686
Msa1124470 AT5G04310.3 62.919 418 143 1 5 410 22 439 0.0 546
Msa1124470 AT5G04310.1 59.867 451 163 2 5 443 22 466 0.0 543
Msa1124470 AT5G04310.2 59.867 451 163 2 5 443 22 466 0.0 543
Msa1124470 AT3G54920.1 64.286 406 122 4 21 412 22 418 0.0 541
Msa1124470 AT4G13710.1 64.894 376 129 1 35 407 88 463 0.0 529
Msa1124470 AT4G13710.2 64.894 376 129 1 35 407 69 444 0.0 528
Msa1124470 AT1G04680.1 64.267 375 131 1 35 406 47 421 1.75e-180 512
Msa1124470 AT5G63180.1 66.276 341 114 1 35 375 52 391 3.78e-177 503
Msa1124470 AT3G07010.1 62.634 372 138 1 35 406 38 408 2.23e-176 501
Msa1124470 AT1G67750.1 63.172 372 134 1 35 406 32 400 5.65e-176 499
Msa1124470 AT3G07010.2 63.944 355 128 0 52 406 21 375 1.20e-174 495
Msa1124470 AT3G24670.1 62.634 372 138 1 35 406 62 432 8.27e-174 495
Msa1124470 AT4G24780.2 59.852 406 150 1 1 406 8 400 5.14e-172 489
Msa1124470 AT4G24780.1 59.852 406 150 1 1 406 8 400 5.14e-172 489
Msa1124470 AT4G13210.2 62.097 372 141 0 35 406 59 430 2.91e-168 481
Msa1124470 AT4G13210.1 62.097 372 141 0 35 406 22 393 4.74e-168 479
Msa1124470 AT5G48900.1 63.172 372 136 1 35 406 39 409 5.48e-167 477
Msa1124470 AT3G24230.1 57.286 398 164 3 18 410 51 447 3.31e-165 474
Msa1124470 AT3G27400.1 54.815 405 173 3 7 410 13 408 4.16e-157 452
Msa1124470 AT3G27400.2 54.815 405 173 3 7 410 17 412 4.93e-157 452
Msa1124470 AT1G14420.1 49.877 407 180 3 25 407 46 452 9.08e-145 422
Msa1124470 AT5G55720.1 55.616 365 154 4 43 406 27 384 2.48e-140 408
Msa1124470 AT5G15110.1 53.314 347 160 2 62 406 118 464 5.91e-137 402
Msa1124470 AT2G02720.1 47.561 410 191 3 22 407 39 448 3.15e-135 397
Msa1124470 AT3G01270.1 53.026 347 161 2 62 406 121 467 1.60e-134 397
Msa1124470 AT1G11920.1 54.971 342 151 3 66 406 37 376 2.41e-132 388
Msa1124470 AT4G22090.1 52.450 347 161 3 66 411 47 390 3.15e-128 377
Msa1124470 AT4G22080.1 52.738 347 160 3 66 411 47 390 5.42e-128 377
Msa1124470 AT1G30350.1 48.094 341 161 3 66 406 36 360 2.35e-110 331
Msa1124470 AT5G09280.1 45.783 249 130 4 99 345 6 251 4.22e-69 222
Msa1124470 AT3G55140.1 34.513 339 190 8 85 416 16 329 1.43e-44 159
Msa1124470 AT3G09540.1 35.640 289 158 7 83 369 61 323 9.21e-38 142
Msa1124470 AT3G55140.2 33.224 304 176 7 120 416 22 305 1.33e-36 137
Msa1124470 AT3G09540.3 34.948 289 156 8 83 369 61 319 2.31e-35 135
Msa1124470 AT3G09540.2 34.959 246 134 5 83 327 61 281 1.79e-31 122

Find 145 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATTTGTATTTCTCTTAAT+TGG 0.128244 7_3:-75630809 Msa1124470:three_prime_UTR
TGACGATTGTTGGGCCATTC+TGG 0.141760 7_3:+75633164 None:intergenic
TATCTTAATGTACCTGGTTT+TGG 0.197993 7_3:+75633038 None:intergenic
CGTTTGTTGTAATAATAATA+AGG 0.214196 7_3:+75634573 None:intergenic
CAGCGATGGGGACGGCGTTT+TGG 0.217515 7_3:-75630993 Msa1124470:CDS
CGTCATTGAATAATTGTTAA+TGG 0.220009 7_3:+75630869 None:intergenic
ACAATCGCATTCAACCATTT+TGG 0.238643 7_3:-75631599 Msa1124470:CDS
CAATTATTCAATGACGATTC+AGG 0.253747 7_3:-75630862 Msa1124470:exon
ATGCTTTAACAAATGTTATA+AGG 0.255648 7_3:+75634631 None:intergenic
GTGACTTGCATTCCCGAGTC+TGG 0.262310 7_3:+75631620 None:intergenic
CACAACGAAGTCATGCTTCT+TGG 0.283178 7_3:-75631662 Msa1124470:CDS
ACCATGAACTCTGGTGTTCT+TGG 0.304418 7_3:-75631236 Msa1124470:CDS
AATAGTTATAAGACTATTGA+TGG 0.310239 7_3:-75632936 Msa1124470:CDS
CATTTCCAACAATCATCAAT+TGG 0.314546 7_3:+75633191 None:intergenic
GAACAAGTTTCTCGCCAAAA+TGG 0.319612 7_3:+75631585 None:intergenic
GACGATTGTTGGGCCATTCT+GGG 0.344735 7_3:+75633165 None:intergenic
ATAAGTGGAAAGGGTGGAAT+TGG 0.352983 7_3:-75631382 Msa1124470:CDS
TTAGCAATATGCATATTGTT+TGG 0.355631 7_3:+75634364 None:intergenic
AGGTTAGCCGATTGTGCAAT+TGG 0.358460 7_3:-75633140 Msa1124470:CDS
ATGCTGAACTTAACTCTTCC+TGG 0.360407 7_3:-75634300 Msa1124470:CDS
AGTGTTACAGTGTCATAGTT+TGG 0.373755 7_3:+75634426 None:intergenic
GTTCTGTAGCCAAAGTGTTC+AGG 0.376398 7_3:+75631830 None:intergenic
AAATGATAGTGCTTTCAAAT+AGG 0.376854 7_3:+75630763 None:intergenic
GCCGATTGTGCAATTGGGTT+TGG 0.377737 7_3:-75633134 Msa1124470:CDS
TCAGGATCAGGGTGTGTTCC+AGG 0.378040 7_3:+75634282 None:intergenic
GGCTAACCTTTGACGATTGT+TGG 0.382399 7_3:+75633154 None:intergenic
ACAAGAAGGGAAATGCTATC+TGG 0.384020 7_3:-75633236 Msa1124470:CDS
CAACCTCGTTGGTTAATCAT+TGG 0.384722 7_3:-75634512 Msa1124470:five_prime_UTR
TATTCGGTTCAAAAGACATA+TGG 0.386358 7_3:-75631781 Msa1124470:CDS
ACCAAGAACACCAGAGTTCA+TGG 0.386785 7_3:+75631235 None:intergenic
TCTTTAGCAAAAGGATTAAT+CGG 0.390880 7_3:+75631434 None:intergenic
GTTTGTTGTAATAATAATAA+GGG 0.390962 7_3:+75634574 None:intergenic
AGCTTAATCATCATGTTACT+AGG 0.399747 7_3:+75632978 None:intergenic
GACATATCATCTGTGTAATC+CGG 0.400194 7_3:+75630962 None:intergenic
TTAGTAACCTCTTTAGCAAA+AGG 0.407154 7_3:+75631425 None:intergenic
ACCAAACCCAATTGCACAAT+CGG 0.408786 7_3:+75633133 None:intergenic
TGGGCAACAGCATCAGGATC+AGG 0.423368 7_3:+75634270 None:intergenic
AATGTTGTTACCAATGTAAT+GGG 0.426895 7_3:-75630839 Msa1124470:three_prime_UTR
GCTAACCTTTGACGATTGTT+GGG 0.428057 7_3:+75633155 None:intergenic
GACGCAGTAATGGGATCAAC+AGG 0.432552 7_3:-75631716 Msa1124470:CDS
ACTTCGTGGGCAACAGCATC+AGG 0.432565 7_3:+75634264 None:intergenic
GAGGGCGATGTTATGGTTAA+TGG 0.439241 7_3:-75631353 Msa1124470:CDS
ATTTCCAACAATCATCAATT+GGG 0.445116 7_3:+75633192 None:intergenic
GAGGTCTGAGGGCGATGTTA+TGG 0.445901 7_3:-75631360 Msa1124470:CDS
AAACCAGGTACATTAAGATA+TGG 0.447126 7_3:-75633035 Msa1124470:CDS
TTACAGTGTCATAGTTTGGC+TGG 0.448972 7_3:+75634430 None:intergenic
CTGTTGCCCACGAAGTTCAT+AGG 0.450905 7_3:-75634257 Msa1124470:intron
GTAAGGTGAGTTAATAAGCT+TGG 0.451472 7_3:+75634481 None:intergenic
CTAAGTTCATTGTCACCACT+TGG 0.456599 7_3:-75634330 Msa1124470:CDS
GTAACCCAATTGATGATTGT+TGG 0.459610 7_3:-75633196 Msa1124470:CDS
GAATGTTGTTACCAATGTAA+TGG 0.462083 7_3:-75630840 Msa1124470:three_prime_UTR
TTGAGTATGAAAAGAAATAG+AGG 0.464159 7_3:+75634532 None:intergenic
GTTCTTCTTACCATGAACTC+TGG 0.465896 7_3:-75631245 Msa1124470:CDS
TCTGGATCTGCATGCATGAC+TGG 0.467981 7_3:-75633218 Msa1124470:CDS
GGAGATGGAATATCCATATT+CGG 0.470162 7_3:-75631797 Msa1124470:CDS
TTCCCTTGACTGTTAATAGT+TGG 0.473228 7_3:+75631470 None:intergenic
GGGCTAATAGACGCAGTAAT+GGG 0.473382 7_3:-75631725 Msa1124470:CDS
CACTTTCACATTGCAAAGAC+GGG 0.477811 7_3:-75631745 Msa1124470:CDS
GGTTAGCCGATTGTGCAATT+GGG 0.492133 7_3:-75633139 Msa1124470:CDS
CGGGCTAATAGACGCAGTAA+TGG 0.493394 7_3:-75631726 Msa1124470:CDS
TGACTTGCATTCCCGAGTCT+GGG 0.496767 7_3:+75631621 None:intergenic
GGGTTTGGTCAGTATGCAAA+AGG 0.497076 7_3:-75633119 Msa1124470:CDS
AGTGGAAAGGGTGGAATTGG+AGG 0.499850 7_3:-75631379 Msa1124470:CDS
AGCAGAGGACCAAGCAGCGA+TGG 0.500343 7_3:-75631007 Msa1124470:CDS
GCAGAGGACCAAGCAGCGAT+GGG 0.502247 7_3:-75631006 Msa1124470:CDS
AATTGGAACTAGAATGAAAA+GGG 0.504205 7_3:-75630792 Msa1124470:three_prime_UTR
GGGTGGAATTGGAGGTCTGA+GGG 0.505531 7_3:-75631371 Msa1124470:CDS
GATTACACAGATGATATGTC+GGG 0.512052 7_3:-75630959 Msa1124470:CDS
CGATGACTACCTCCCAGACT+CGG 0.513550 7_3:-75631633 Msa1124470:CDS
CAGTATGCAAAAGGAGGAAA+AGG 0.518811 7_3:-75633110 Msa1124470:CDS
ACAGATGATATGTCGGGGAG+TGG 0.519200 7_3:-75630953 Msa1124470:CDS
TTGGCGAGAAACTTGTTCAA+AGG 0.520746 7_3:-75631580 Msa1124470:CDS
TGCTAAAGAGGTTACTAAGA+GGG 0.523648 7_3:-75631420 Msa1124470:CDS
GATTAATCGGCGCAAAGTAA+CGG 0.527782 7_3:+75631447 None:intergenic
ATGTATGCCATTGGTGGGAG+TGG 0.531396 7_3:-75631497 Msa1124470:CDS
GTGTTAGACAGTGTAGGGTA+AGG 0.531570 7_3:+75634464 None:intergenic
ATTCGGTTCAAAAGACATAT+GGG 0.534566 7_3:-75631780 Msa1124470:CDS
TAATTGGAACTAGAATGAAA+AGG 0.535739 7_3:-75630793 Msa1124470:three_prime_UTR
ACACTTTCACATTGCAAAGA+CGG 0.537625 7_3:-75631746 Msa1124470:CDS
ATTCACCATTGTCACCCCTC+AGG 0.541826 7_3:-75632831 Msa1124470:intron
CTGAGCAAAATAAGTGGAAA+GGG 0.542173 7_3:-75631391 Msa1124470:CDS
ACATATCATCTGTGTAATCC+GGG 0.549362 7_3:+75630963 None:intergenic
GGAGCTGATGTTCACATTGT+GGG 0.551679 7_3:-75632909 Msa1124470:CDS
TTGCTAAAGAGGTTACTAAG+AGG 0.553900 7_3:-75631421 Msa1124470:CDS
TGAATGCTTCAATGACAAGA+AGG 0.554325 7_3:-75633250 Msa1124470:CDS
ACTGAGCAAAATAAGTGGAA+AGG 0.554524 7_3:-75631392 Msa1124470:CDS
GCTTAATCATCATGTTACTA+GGG 0.556966 7_3:+75632979 None:intergenic
TTGAAACTGAGCAAAATAAG+TGG 0.559398 7_3:-75631397 Msa1124470:CDS
ACACCATATCTTAATGTACC+TGG 0.562826 7_3:+75633032 None:intergenic
GAGAGTACCTATGAACTTCG+TGG 0.563450 7_3:+75634250 None:intergenic
GGATTACACAGATGATATGT+CGG 0.567349 7_3:-75630960 Msa1124470:CDS
CAACAATGATTTCACTGAGT+GGG 0.568957 7_3:-75631522 Msa1124470:CDS
AGAACAATGTCAGACGGAGA+TGG 0.571939 7_3:-75631812 Msa1124470:CDS
AGGATGCCGCGATGCAGAAG+AGG 0.581104 7_3:-75631560 Msa1124470:CDS
TTGAGCCTCAGTCTGCTGAT+CGG 0.583286 7_3:-75631271 Msa1124470:CDS
AGAGTACCTATGAACTTCGT+GGG 0.584167 7_3:+75634251 None:intergenic
GAACCAACTATTAACAGTCA+AGG 0.587576 7_3:-75631473 Msa1124470:CDS
GAGACAATAACGTGGGAATG+TGG 0.588718 7_3:-75631030 Msa1124470:CDS
AACCAACTATTAACAGTCAA+GGG 0.588756 7_3:-75631472 Msa1124470:CDS
AGATCAAGTCCTGAACACTT+TGG 0.591055 7_3:-75631839 Msa1124470:CDS
CAGATGATATGTCGGGGAGT+GGG 0.593279 7_3:-75630952 Msa1124470:CDS
GATGACTACCTCCCAGACTC+GGG 0.595437 7_3:-75631632 Msa1124470:CDS
TGGGAAATGTATGCCATTGG+TGG 0.596160 7_3:-75631503 Msa1124470:CDS
GTTGGAAATGTGACCCAGAA+TGG 0.596705 7_3:-75633178 Msa1124470:CDS
GGGCAACAGCATCAGGATCA+GGG 0.598180 7_3:+75634271 None:intergenic
TATAAGACTATTGATGGACG+TGG 0.600481 7_3:-75632930 Msa1124470:CDS
GGACCAAGCAGCGATGGGGA+CGG 0.600486 7_3:-75631001 Msa1124470:CDS
CTGGTGTTCTTGGTAATGCA+AGG 0.604456 7_3:-75631226 Msa1124470:intron
TACAGAGTGTCCCATTACAT+TGG 0.605677 7_3:+75630829 None:intergenic
TGGTTCACCACTCCCACCAA+TGG 0.607021 7_3:+75631490 None:intergenic
GTGGTGTGACATGAAATTGT+TGG 0.608269 7_3:+75631682 None:intergenic
TTCAGCATTGCTGTTCCAAG+TGG 0.609311 7_3:+75634315 None:intergenic
TCTAGAGGTTAAGTATGAGA+AGG 0.613904 7_3:-75631303 Msa1124470:CDS
AGCAAAATAAGTGGAAAGGG+TGG 0.614597 7_3:-75631388 Msa1124470:CDS
GAATGCTTCAATGACAAGAA+GGG 0.614697 7_3:-75633249 Msa1124470:CDS
TGGAGCTGATGTTCACATTG+TGG 0.619914 7_3:-75632910 Msa1124470:CDS
AACGTGGGAATGTGGAGCAG+AGG 0.622150 7_3:-75631022 Msa1124470:CDS
AATGGCCCAACAATCGTCAA+AGG 0.624366 7_3:-75633160 Msa1124470:CDS
CAGAGGACCAAGCAGCGATG+GGG 0.626235 7_3:-75631005 Msa1124470:CDS
TACATCTGGTGACACTCTAG+AGG 0.626427 7_3:-75631318 Msa1124470:CDS
GGCTACAGAACAATGTCAGA+CGG 0.627647 7_3:-75631818 Msa1124470:CDS
AGGGTGGAATTGGAGGTCTG+AGG 0.632478 7_3:-75631372 Msa1124470:CDS
GATGTTCACATTGTGGGAGG+AGG 0.632754 7_3:-75632903 Msa1124470:CDS
GATGCTGTTACCCCAAAACC+AGG 0.647989 7_3:-75633050 Msa1124470:CDS
CTTGCATTCCCGAGTCTGGG+AGG 0.650874 7_3:+75631624 None:intergenic
GAGTGGGAAATGTATGCCAT+TGG 0.652139 7_3:-75631506 Msa1124470:CDS
TATGCAAAAGGAGGAAAAGG+TGG 0.653291 7_3:-75633107 Msa1124470:CDS
TGAAATCATTGTTGACCACA+TGG 0.656768 7_3:+75631531 None:intergenic
GGGAAATGTATGCCATTGGT+GGG 0.664586 7_3:-75631502 Msa1124470:CDS
TGCAATGTGAAAGTGTGCAA+TGG 0.670900 7_3:+75631753 None:intergenic
GGTAACAGCATCATCATCTG+AGG 0.674055 7_3:+75633061 None:intergenic
TTTGGTCAGTATGCAAAAGG+AGG 0.678553 7_3:-75633116 Msa1124470:CDS
ACAATCCGATCAGCAGACTG+AGG 0.680915 7_3:+75631266 None:intergenic
AAAGTTGTTAATTACCTGAG+GGG 0.681744 7_3:+75632817 None:intergenic
AATTACCTGAGGGGTGACAA+TGG 0.687239 7_3:+75632826 None:intergenic
ATGTATCCTCTTCTGCATCG+CGG 0.697577 7_3:+75631554 None:intergenic
ATAAACAGAGACAATAACGT+GGG 0.697690 7_3:-75631037 Msa1124470:intron
TCAACAATGATTTCACTGAG+TGG 0.700994 7_3:-75631523 Msa1124470:CDS
CTAGGGAACACTATCCACAA+TGG 0.701399 7_3:+75632996 None:intergenic
CAAGAAGCATGACTTCGTTG+TGG 0.705960 7_3:+75631663 None:intergenic
GCTGATGTTCACATTGTGGG+AGG 0.709791 7_3:-75632906 Msa1124470:CDS
ATTACACAGATGATATGTCG+GGG 0.715574 7_3:-75630958 Msa1124470:CDS
AATAAACAGAGACAATAACG+TGG 0.769403 7_3:-75631038 Msa1124470:intron
CAGAAGAGGATACATCCATG+TGG 0.773024 7_3:-75631546 Msa1124470:CDS
AAACCAATGATTAACCAACG+AGG 0.815880 7_3:+75634509 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATAATCATCAATT+TGG - chr7_3:75631458-75631477 Msa1124470:CDS 10.0%
!! ATTAAAAAATATATTATGTG+GGG - chr7_3:75632834-75632853 Msa1124470:CDS 10.0%
!!! GTTTGTTGTAATAATAATAA+GGG + chr7_3:75630828-75630847 None:intergenic 15.0%
!!! GTTTATAAAAATTCTGAAAA+TGG + chr7_3:75631484-75631503 None:intergenic 15.0%
!! CATATTTAACAATTCATTAT+AGG - chr7_3:75631642-75631661 Msa1124470:CDS 15.0%
!! TCCTTCAAAAAAAAAATTAT+AGG - chr7_3:75631673-75631692 Msa1124470:CDS 15.0%
!! TTTCTTCAAAAAAAGAATAT+GGG - chr7_3:75631745-75631764 Msa1124470:CDS 15.0%
!! CATAATATAACAGTTATTAT+GGG + chr7_3:75634230-75634249 None:intergenic 15.0%
!! TCATAATATAACAGTTATTA+TGG + chr7_3:75634231-75634250 None:intergenic 15.0%
!!! CGTTTGTTGTAATAATAATA+AGG + chr7_3:75630829-75630848 None:intergenic 20.0%
!! TTTATCAAAATTACCAAACT+AGG - chr7_3:75631513-75631532 Msa1124470:CDS 20.0%
!! TTATCAAAATTACCAAACTA+GGG - chr7_3:75631514-75631533 Msa1124470:CDS 20.0%
!!! GCCTATAATTTTTTTTTTGA+AGG + chr7_3:75631677-75631696 None:intergenic 20.0%
!! CTTTCTTCAAAAAAAGAATA+TGG - chr7_3:75631744-75631763 Msa1124470:CDS 20.0%
!!! TATTTTGTTTGAATGACAAA+AGG - chr7_3:75631821-75631840 Msa1124470:CDS 20.0%
!!! TTATTAGTTTTTACTAAGAG+TGG - chr7_3:75631850-75631869 Msa1124470:CDS 20.0%
!!! TTTTTTAAATAGTTTGAGAG+TGG + chr7_3:75631903-75631922 None:intergenic 20.0%
!! AATAGTTATAAGACTATTGA+TGG - chr7_3:75632463-75632482 Msa1124470:intron 20.0%
!! AGAATATAATACCAAGTTAA+GGG + chr7_3:75632616-75632635 None:intergenic 20.0%
!!! TGTTCTTTTTTCTTATTGTT+GGG + chr7_3:75633113-75633132 None:intergenic 20.0%
!! ATGGTATATATGAAATAAGA+TGG + chr7_3:75633157-75633176 None:intergenic 20.0%
!!! TAACTGTAAGTTTAGTTTTA+GGG + chr7_3:75633439-75633458 None:intergenic 20.0%
!!! TTAACTGTAAGTTTAGTTTT+AGG + chr7_3:75633440-75633459 None:intergenic 20.0%
!! AAGCATAAATGATGAAAATT+AGG - chr7_3:75633506-75633525 Msa1124470:intron 20.0%
!! GTATTTGTATTTCTCTTAAT+TGG - chr7_3:75634590-75634609 Msa1124470:five_prime_UTR 20.0%
! TTGAGTATGAAAAGAAATAG+AGG + chr7_3:75630870-75630889 None:intergenic 25.0%
! TTAGCAATATGCATATTGTT+TGG + chr7_3:75631038-75631057 None:intergenic 25.0%
! TCTAACTTGAATATAGTCTA+GGG + chr7_3:75631315-75631334 None:intergenic 25.0%
! ATCTAACTTGAATATAGTCT+AGG + chr7_3:75631316-75631335 None:intergenic 25.0%
!! TAAGTACTTGATTTTGAACT+AGG + chr7_3:75631793-75631812 None:intergenic 25.0%
!!! GAACTTTTTCTTTGATTTAG+TGG - chr7_3:75631962-75631981 Msa1124470:intron 25.0%
! ATTTAGTGGTAGATTTAGAA+AGG - chr7_3:75631976-75631995 Msa1124470:intron 25.0%
!!! AATGTTTTGTTTGTTGTTGT+AGG - chr7_3:75632122-75632141 Msa1124470:intron 25.0%
! ATTTCCAACAATCATCAATT+GGG + chr7_3:75632210-75632229 None:intergenic 25.0%
! TGATAAAAAATGAACCATTG+TGG - chr7_3:75632389-75632408 Msa1124470:intron 25.0%
! CAGAATATAATACCAAGTTA+AGG + chr7_3:75632617-75632636 None:intergenic 25.0%
!!! ACATGTTTTGTTTTGAAGAA+TGG - chr7_3:75632673-75632692 Msa1124470:intron 25.0%
!! GAAAAGTTATGTCTATTTTG+TGG - chr7_3:75632695-75632714 Msa1124470:intron 25.0%
!!! CGTAATTTCTAATTTTGGTA+CGG + chr7_3:75632766-75632785 None:intergenic 25.0%
!!! CTGTTCTTTTTTCTTATTGT+TGG + chr7_3:75633114-75633133 None:intergenic 25.0%
!! ATCTTTTATTAGCAATGCAA+TGG + chr7_3:75633176-75633195 None:intergenic 25.0%
! TGCATTGCTAATAAAAGATT+TGG - chr7_3:75633177-75633196 Msa1124470:CDS 25.0%
!!! ACAAGAATTGAAACTGATTT+TGG - chr7_3:75633249-75633268 Msa1124470:CDS 25.0%
!!! AGGCGAAATAAATTTTGATT+AGG + chr7_3:75633290-75633309 None:intergenic 25.0%
! TTGAACAATAAATTTGAAGG+TGG + chr7_3:75633348-75633367 None:intergenic 25.0%
! CAGTTGAACAATAAATTTGA+AGG + chr7_3:75633351-75633370 None:intergenic 25.0%
! TCTTTAGCAAAAGGATTAAT+CGG + chr7_3:75633968-75633987 None:intergenic 25.0%
! CGTCATTGAATAATTGTTAA+TGG + chr7_3:75634533-75634552 None:intergenic 25.0%
! AATGTTGTTACCAATGTAAT+GGG - chr7_3:75634560-75634579 Msa1124470:five_prime_UTR 25.0%
! TAATTGGAACTAGAATGAAA+AGG - chr7_3:75634606-75634625 Msa1124470:five_prime_UTR 25.0%
! AATTGGAACTAGAATGAAAA+GGG - chr7_3:75634607-75634626 Msa1124470:five_prime_UTR 25.0%
!! AAAAAGTGTTAGACAGTGTA+GGG + chr7_3:75630943-75630962 None:intergenic 30.0%
CATTGAGATGAAAGAAACAA+GGG + chr7_3:75631176-75631195 None:intergenic 30.0%
ACATTGAGATGAAAGAAACA+AGG + chr7_3:75631177-75631196 None:intergenic 30.0%
TTAGAGAAAAATAGCAGATC+TGG - chr7_3:75631218-75631237 Msa1124470:intron 30.0%
AACTAGTAAGCTGAAATATG+GGG + chr7_3:75631282-75631301 None:intergenic 30.0%
GAACTAGTAAGCTGAAATAT+GGG + chr7_3:75631283-75631302 None:intergenic 30.0%
AGAACTAGTAAGCTGAAATA+TGG + chr7_3:75631284-75631303 None:intergenic 30.0%
!! ATCAATTTTAGTCCCTAGTT+TGG + chr7_3:75631529-75631548 None:intergenic 30.0%
!!! TTTTGTTTGTTGTTGTAGGA+AGG - chr7_3:75632126-75632145 Msa1124470:intron 30.0%
CATTTCCAACAATCATCAAT+TGG + chr7_3:75632211-75632230 None:intergenic 30.0%
!! ATCTTAATGTACCTGGTTTT+GGG + chr7_3:75632363-75632382 None:intergenic 30.0%
! TATCTTAATGTACCTGGTTT+TGG + chr7_3:75632364-75632383 None:intergenic 30.0%
AAACCAGGTACATTAAGATA+TGG - chr7_3:75632364-75632383 Msa1124470:intron 30.0%
GCTTAATCATCATGTTACTA+GGG + chr7_3:75632423-75632442 None:intergenic 30.0%
AGCTTAATCATCATGTTACT+AGG + chr7_3:75632424-75632443 None:intergenic 30.0%
AAAGTTGTTAATTACCTGAG+GGG + chr7_3:75632585-75632604 None:intergenic 30.0%
CAAAGTTGTTAATTACCTGA+GGG + chr7_3:75632586-75632605 None:intergenic 30.0%
!!! TTTGGTTTTTTCCCTTAACT+TGG - chr7_3:75632602-75632621 Msa1124470:intron 30.0%
GGTATTATATTCTGCTTTGA+CGG - chr7_3:75632623-75632642 Msa1124470:intron 30.0%
! GTCTATTTTGTGGAGATTAT+TGG - chr7_3:75632705-75632724 Msa1124470:intron 30.0%
!! TACAACATTGGTCATTTTGT+GGG - chr7_3:75632794-75632813 Msa1124470:intron 30.0%
! TCAACTTTCTTTTCATGAGA+TGG + chr7_3:75632871-75632890 None:intergenic 30.0%
! CTATTTAGAAGAGACTTTTG+AGG + chr7_3:75632910-75632929 None:intergenic 30.0%
GTCTCTTCTAAATAGAGATA+TGG - chr7_3:75632915-75632934 Msa1124470:CDS 30.0%
TAAAACAAGTTGCAAGAAGA+GGG - chr7_3:75633026-75633045 Msa1124470:CDS 30.0%
! ATTGTTGGGTACTTTTACAA+GGG + chr7_3:75633099-75633118 None:intergenic 30.0%
! TATTGTTGGGTACTTTTACA+AGG + chr7_3:75633100-75633119 None:intergenic 30.0%
! AAGATGGTTGTGTTTTCTTT+GGG + chr7_3:75633141-75633160 None:intergenic 30.0%
! TAAGATGGTTGTGTTTTCTT+TGG + chr7_3:75633142-75633161 None:intergenic 30.0%
! GCATCCTTAGATTCAATTTT+AGG - chr7_3:75633209-75633228 Msa1124470:CDS 30.0%
CTCTCCTAAAATTGAATCTA+AGG + chr7_3:75633216-75633235 None:intergenic 30.0%
!! TATTTCGCCTCTAGAATTTA+TGG - chr7_3:75633300-75633319 Msa1124470:intron 30.0%
ACAACAACCATAAATTCTAG+AGG + chr7_3:75633310-75633329 None:intergenic 30.0%
! TATGTCTTTTGAACCGAATA+TGG + chr7_3:75633618-75633637 None:intergenic 30.0%
TATTCGGTTCAAAAGACATA+TGG - chr7_3:75633618-75633637 Msa1124470:intron 30.0%
ATTCGGTTCAAAAGACATAT+GGG - chr7_3:75633619-75633638 Msa1124470:intron 30.0%
AACCAACTATTAACAGTCAA+GGG - chr7_3:75633927-75633946 Msa1124470:intron 30.0%
! GATTAATCCTTTTGCTAAAG+AGG - chr7_3:75633967-75633986 Msa1124470:intron 30.0%
TTAGTAACCTCTTTAGCAAA+AGG + chr7_3:75633977-75633996 None:intergenic 30.0%
TTGAAACTGAGCAAAATAAG+TGG - chr7_3:75634002-75634021 Msa1124470:intron 30.0%
!! TTCTATGAATTGAGTTGAGT+TGG - chr7_3:75634313-75634332 Msa1124470:CDS 30.0%
AATAAACAGAGACAATAACG+TGG - chr7_3:75634361-75634380 Msa1124470:CDS 30.0%
ATAAACAGAGACAATAACGT+GGG - chr7_3:75634362-75634381 Msa1124470:CDS 30.0%
! GTTGTCATCTTCTTTTACTA+TGG - chr7_3:75634475-75634494 Msa1124470:five_prime_UTR 30.0%
CAATTATTCAATGACGATTC+AGG - chr7_3:75634537-75634556 Msa1124470:five_prime_UTR 30.0%
GAATGTTGTTACCAATGTAA+TGG - chr7_3:75634559-75634578 Msa1124470:five_prime_UTR 30.0%
AAACCAATGATTAACCAACG+AGG + chr7_3:75630893-75630912 None:intergenic 35.0%
GTAAGGTGAGTTAATAAGCT+TGG + chr7_3:75630921-75630940 None:intergenic 35.0%
!! CAAAAAGTGTTAGACAGTGT+AGG + chr7_3:75630944-75630963 None:intergenic 35.0%
AGTGTTACAGTGTCATAGTT+TGG + chr7_3:75630976-75630995 None:intergenic 35.0%
! AACATAGTGGAAAATGACAC+GGG + chr7_3:75631247-75631266 None:intergenic 35.0%
! CAACATAGTGGAAAATGACA+CGG + chr7_3:75631248-75631267 None:intergenic 35.0%
GAAGACAAGAAACAACATAG+TGG + chr7_3:75631260-75631279 None:intergenic 35.0%
AGTTTGAGAGTGGAACTATA+AGG + chr7_3:75631893-75631912 None:intergenic 35.0%
TGAATGCTTCAATGACAAGA+AGG - chr7_3:75632149-75632168 Msa1124470:intron 35.0%
GAATGCTTCAATGACAAGAA+GGG - chr7_3:75632150-75632169 Msa1124470:intron 35.0%
! GTAACCCAATTGATGATTGT+TGG - chr7_3:75632203-75632222 Msa1124470:intron 35.0%
!!! TCTTAATGTACCTGGTTTTG+GGG + chr7_3:75632362-75632381 None:intergenic 35.0%
ACACCATATCTTAATGTACC+TGG + chr7_3:75632370-75632389 None:intergenic 35.0%
! TATAAGACTATTGATGGACG+TGG - chr7_3:75632469-75632488 Msa1124470:intron 35.0%
CCAAAGTTGTTAATTACCTG+AGG + chr7_3:75632587-75632606 None:intergenic 35.0%
CCTCAGGTAATTAACAACTT+TGG - chr7_3:75632584-75632603 Msa1124470:intron 35.0%
! TGCACAATGCAGTTATGTTT+TGG + chr7_3:75632654-75632673 None:intergenic 35.0%
!! GTACAACATTGGTCATTTTG+TGG - chr7_3:75632793-75632812 Msa1124470:intron 35.0%
!! ACAACATTGGTCATTTTGTG+GGG - chr7_3:75632795-75632814 Msa1124470:intron 35.0%
TTCATGAGATGGTACAAAAC+AGG + chr7_3:75632860-75632879 None:intergenic 35.0%
CTAAAACAAGTTGCAAGAAG+AGG - chr7_3:75633025-75633044 Msa1124470:CDS 35.0%
AAAACAAGTTGCAAGAAGAG+GGG - chr7_3:75633027-75633046 Msa1124470:CDS 35.0%
TTAGGAGTCTGATATATTGC+AGG - chr7_3:75633524-75633543 Msa1124470:intron 35.0%
TAGGAGTCTGATATATTGCA+GGG - chr7_3:75633525-75633544 Msa1124470:intron 35.0%
GGAGATGGAATATCCATATT+CGG - chr7_3:75633602-75633621 Msa1124470:intron 35.0%
ACACTTTCACATTGCAAAGA+CGG - chr7_3:75633653-75633672 Msa1124470:intron 35.0%
! ACAATCGCATTCAACCATTT+TGG - chr7_3:75633800-75633819 Msa1124470:intron 35.0%
TGAAATCATTGTTGACCACA+TGG + chr7_3:75633871-75633890 None:intergenic 35.0%
TCAACAATGATTTCACTGAG+TGG - chr7_3:75633876-75633895 Msa1124470:intron 35.0%
CAACAATGATTTCACTGAGT+GGG - chr7_3:75633877-75633896 Msa1124470:intron 35.0%
GAACCAACTATTAACAGTCA+AGG - chr7_3:75633926-75633945 Msa1124470:intron 35.0%
TTCCCTTGACTGTTAATAGT+TGG + chr7_3:75633932-75633951 None:intergenic 35.0%
TTGCTAAAGAGGTTACTAAG+AGG - chr7_3:75633978-75633997 Msa1124470:intron 35.0%
TGCTAAAGAGGTTACTAAGA+GGG - chr7_3:75633979-75633998 Msa1124470:intron 35.0%
ACTGAGCAAAATAAGTGGAA+AGG - chr7_3:75634007-75634026 Msa1124470:intron 35.0%
CTGAGCAAAATAAGTGGAAA+GGG - chr7_3:75634008-75634027 Msa1124470:intron 35.0%
!!! GGTGCATTTTTTGTTACATC+TGG - chr7_3:75634067-75634086 Msa1124470:intron 35.0%
TCTAGAGGTTAAGTATGAGA+AGG - chr7_3:75634096-75634115 Msa1124470:intron 35.0%
ACATATCATCTGTGTAATCC+GGG + chr7_3:75634439-75634458 None:intergenic 35.0%
GACATATCATCTGTGTAATC+CGG + chr7_3:75634440-75634459 None:intergenic 35.0%
GGATTACACAGATGATATGT+CGG - chr7_3:75634439-75634458 Msa1124470:five_prime_UTR 35.0%
GATTACACAGATGATATGTC+GGG - chr7_3:75634440-75634459 Msa1124470:five_prime_UTR 35.0%
ATTACACAGATGATATGTCG+GGG - chr7_3:75634441-75634460 Msa1124470:five_prime_UTR 35.0%
! CTTTTCATACTCAACCTCGT+TGG - chr7_3:75630876-75630895 Msa1124470:CDS 40.0%
! CAACCTCGTTGGTTAATCAT+TGG - chr7_3:75630887-75630906 Msa1124470:CDS 40.0%
TTACAGTGTCATAGTTTGGC+TGG + chr7_3:75630972-75630991 None:intergenic 40.0%
CTAAGTTCATTGTCACCACT+TGG - chr7_3:75631069-75631088 Msa1124470:intron 40.0%
ATGCTGAACTTAACTCTTCC+TGG - chr7_3:75631099-75631118 Msa1124470:intron 40.0%
! AGAGTACCTATGAACTTCGT+GGG + chr7_3:75631151-75631170 None:intergenic 40.0%
AGATCAGATGCACACGATTT+GGG + chr7_3:75632072-75632091 None:intergenic 40.0%
ACAAGAAGGGAAATGCTATC+TGG - chr7_3:75632163-75632182 Msa1124470:intron 40.0%
GCTAACCTTTGACGATTGTT+GGG + chr7_3:75632247-75632266 None:intergenic 40.0%
ACCAAACCCAATTGCACAAT+CGG + chr7_3:75632269-75632288 None:intergenic 40.0%
TTTGGTCAGTATGCAAAAGG+AGG - chr7_3:75632283-75632302 Msa1124470:intron 40.0%
CAGTATGCAAAAGGAGGAAA+AGG - chr7_3:75632289-75632308 Msa1124470:intron 40.0%
TATGCAAAAGGAGGAAAAGG+TGG - chr7_3:75632292-75632311 Msa1124470:intron 40.0%
! CGCGGCGTAATTTCTAATTT+TGG + chr7_3:75632771-75632790 None:intergenic 40.0%
AAATTAGAAATTACGCCGCG+CGG - chr7_3:75632771-75632790 Msa1124470:intron 40.0%
AGATCAAGTCCTGAACACTT+TGG - chr7_3:75633560-75633579 Msa1124470:intron 40.0%
! TGCAATGTGAAAGTGTGCAA+TGG + chr7_3:75633649-75633668 None:intergenic 40.0%
CACTTTCACATTGCAAAGAC+GGG - chr7_3:75633654-75633673 Msa1124470:intron 40.0%
GTGGTGTGACATGAAATTGT+TGG + chr7_3:75633720-75633739 None:intergenic 40.0%
GAACAAGTTTCTCGCCAAAA+TGG + chr7_3:75633817-75633836 None:intergenic 40.0%
! TTGGCGAGAAACTTGTTCAA+AGG - chr7_3:75633819-75633838 Msa1124470:intron 40.0%
GATTAATCGGCGCAAAGTAA+CGG + chr7_3:75633955-75633974 None:intergenic 40.0%
AGCAAAATAAGTGGAAAGGG+TGG - chr7_3:75634011-75634030 Msa1124470:intron 40.0%
ATAAGTGGAAAGGGTGGAAT+TGG - chr7_3:75634017-75634036 Msa1124470:intron 40.0%
GTTCTTCTTACCATGAACTC+TGG - chr7_3:75634154-75634173 Msa1124470:intron 40.0%
! TACAGAGTGTCCCATTACAT+TGG + chr7_3:75634573-75634592 None:intergenic 40.0%
GTGTTAGACAGTGTAGGGTA+AGG + chr7_3:75630938-75630957 None:intergenic 45.0%
! TTCAGCATTGCTGTTCCAAG+TGG + chr7_3:75631087-75631106 None:intergenic 45.0%
!! GAGAGTACCTATGAACTTCG+TGG + chr7_3:75631152-75631171 None:intergenic 45.0%
CAGATCAGATGCACACGATT+TGG + chr7_3:75632073-75632092 None:intergenic 45.0%
GTTGGAAATGTGACCCAGAA+TGG - chr7_3:75632221-75632240 Msa1124470:intron 45.0%
AATGGCCCAACAATCGTCAA+AGG - chr7_3:75632239-75632258 Msa1124470:intron 45.0%
GGCTAACCTTTGACGATTGT+TGG + chr7_3:75632248-75632267 None:intergenic 45.0%
! AGGTTAGCCGATTGTGCAAT+TGG - chr7_3:75632259-75632278 Msa1124470:intron 45.0%
! GGTTAGCCGATTGTGCAATT+GGG - chr7_3:75632260-75632279 Msa1124470:intron 45.0%
! GGGTTTGGTCAGTATGCAAA+AGG - chr7_3:75632280-75632299 Msa1124470:intron 45.0%
GGTAACAGCATCATCATCTG+AGG + chr7_3:75632341-75632360 None:intergenic 45.0%
CTAGGGAACACTATCCACAA+TGG + chr7_3:75632406-75632425 None:intergenic 45.0%
TGGAGCTGATGTTCACATTG+TGG - chr7_3:75632489-75632508 Msa1124470:intron 45.0%
GGAGCTGATGTTCACATTGT+GGG - chr7_3:75632490-75632509 Msa1124470:intron 45.0%
AATTACCTGAGGGGTGACAA+TGG + chr7_3:75632576-75632595 None:intergenic 45.0%
! GTTCTGTAGCCAAAGTGTTC+AGG + chr7_3:75633572-75633591 None:intergenic 45.0%
GGCTACAGAACAATGTCAGA+CGG - chr7_3:75633581-75633600 Msa1124470:intron 45.0%
AGAACAATGTCAGACGGAGA+TGG - chr7_3:75633587-75633606 Msa1124470:intron 45.0%
GGGCTAATAGACGCAGTAAT+GGG - chr7_3:75633674-75633693 Msa1124470:intron 45.0%
! CAAGAAGCATGACTTCGTTG+TGG + chr7_3:75633739-75633758 None:intergenic 45.0%
CACAACGAAGTCATGCTTCT+TGG - chr7_3:75633737-75633756 Msa1124470:intron 45.0%
ATGTATCCTCTTCTGCATCG+CGG + chr7_3:75633848-75633867 None:intergenic 45.0%
CAGAAGAGGATACATCCATG+TGG - chr7_3:75633853-75633872 Msa1124470:intron 45.0%
GAGTGGGAAATGTATGCCAT+TGG - chr7_3:75633893-75633912 Msa1124470:intron 45.0%
TGGGAAATGTATGCCATTGG+TGG - chr7_3:75633896-75633915 Msa1124470:intron 45.0%
GGGAAATGTATGCCATTGGT+GGG - chr7_3:75633897-75633916 Msa1124470:intron 45.0%
GAGGGCGATGTTATGGTTAA+TGG - chr7_3:75634046-75634065 Msa1124470:intron 45.0%
TACATCTGGTGACACTCTAG+AGG - chr7_3:75634081-75634100 Msa1124470:intron 45.0%
ACCATGAACTCTGGTGTTCT+TGG - chr7_3:75634163-75634182 Msa1124470:intron 45.0%
ACCAAGAACACCAGAGTTCA+TGG + chr7_3:75634167-75634186 None:intergenic 45.0%
!! CTGGTGTTCTTGGTAATGCA+AGG - chr7_3:75634173-75634192 Msa1124470:intron 45.0%
GAGACAATAACGTGGGAATG+TGG - chr7_3:75634369-75634388 Msa1124470:CDS 45.0%
!! TTATTAAAAAATATATTATG+TGG - chr7_3:75632832-75632851 Msa1124470:CDS 5.0%
!! TATTAAAAAATATATTATGT+GGG - chr7_3:75632833-75632852 Msa1124470:CDS 5.0%
!! ATATATAATGAATTAAAAAT+TGG + chr7_3:75634201-75634220 None:intergenic 5.0%
CTGTTGCCCACGAAGTTCAT+AGG - chr7_3:75631142-75631161 Msa1124470:intron 50.0%
TCTGGATCTGCATGCATGAC+TGG - chr7_3:75632181-75632200 Msa1124470:intron 50.0%
GACGATTGTTGGGCCATTCT+GGG + chr7_3:75632237-75632256 None:intergenic 50.0%
TGACGATTGTTGGGCCATTC+TGG + chr7_3:75632238-75632257 None:intergenic 50.0%
GCCGATTGTGCAATTGGGTT+TGG - chr7_3:75632265-75632284 Msa1124470:intron 50.0%
GATGCTGTTACCCCAAAACC+AGG - chr7_3:75632349-75632368 Msa1124470:intron 50.0%
GCTGATGTTCACATTGTGGG+AGG - chr7_3:75632493-75632512 Msa1124470:intron 50.0%
GATGTTCACATTGTGGGAGG+AGG - chr7_3:75632496-75632515 Msa1124470:intron 50.0%
ATTCACCATTGTCACCCCTC+AGG - chr7_3:75632568-75632587 Msa1124470:intron 50.0%
ATGACCAATGTTGTACCGCG+CGG + chr7_3:75632789-75632808 None:intergenic 50.0%
CGGGCTAATAGACGCAGTAA+TGG - chr7_3:75633673-75633692 Msa1124470:intron 50.0%
! GACGCAGTAATGGGATCAAC+AGG - chr7_3:75633683-75633702 Msa1124470:intron 50.0%
! TGACTTGCATTCCCGAGTCT+GGG + chr7_3:75633781-75633800 None:intergenic 50.0%
ATGTATGCCATTGGTGGGAG+TGG - chr7_3:75633902-75633921 Msa1124470:intron 50.0%
AGTGGAAAGGGTGGAATTGG+AGG - chr7_3:75634020-75634039 Msa1124470:intron 50.0%
TTGAGCCTCAGTCTGCTGAT+CGG - chr7_3:75634128-75634147 Msa1124470:intron 50.0%
ACAATCCGATCAGCAGACTG+AGG + chr7_3:75634136-75634155 None:intergenic 50.0%
ACAGATGATATGTCGGGGAG+TGG - chr7_3:75634446-75634465 Msa1124470:five_prime_UTR 50.0%
CAGATGATATGTCGGGGAGT+GGG - chr7_3:75634447-75634466 Msa1124470:five_prime_UTR 50.0%
TCAGGATCAGGGTGTGTTCC+AGG + chr7_3:75631120-75631139 None:intergenic 55.0%
GGGCAACAGCATCAGGATCA+GGG + chr7_3:75631131-75631150 None:intergenic 55.0%
TGGGCAACAGCATCAGGATC+AGG + chr7_3:75631132-75631151 None:intergenic 55.0%
ACTTCGTGGGCAACAGCATC+AGG + chr7_3:75631138-75631157 None:intergenic 55.0%
CGATGACTACCTCCCAGACT+CGG - chr7_3:75633766-75633785 Msa1124470:intron 55.0%
GATGACTACCTCCCAGACTC+GGG - chr7_3:75633767-75633786 Msa1124470:intron 55.0%
! GTGACTTGCATTCCCGAGTC+TGG + chr7_3:75633782-75633801 None:intergenic 55.0%
TGGTTCACCACTCCCACCAA+TGG + chr7_3:75633912-75633931 None:intergenic 55.0%
AGGGTGGAATTGGAGGTCTG+AGG - chr7_3:75634027-75634046 Msa1124470:intron 55.0%
GGGTGGAATTGGAGGTCTGA+GGG - chr7_3:75634028-75634047 Msa1124470:intron 55.0%
GAGGTCTGAGGGCGATGTTA+TGG - chr7_3:75634039-75634058 Msa1124470:intron 55.0%
AACGTGGGAATGTGGAGCAG+AGG - chr7_3:75634377-75634396 Msa1124470:exon 55.0%
TACGCCGCGCGGTACAACAT+TGG - chr7_3:75632782-75632801 Msa1124470:intron 60.0%
CTTGCATTCCCGAGTCTGGG+AGG + chr7_3:75633778-75633797 None:intergenic 60.0%
AGGATGCCGCGATGCAGAAG+AGG - chr7_3:75633839-75633858 Msa1124470:intron 60.0%
AGCAGAGGACCAAGCAGCGA+TGG - chr7_3:75634392-75634411 Msa1124470:five_prime_UTR 60.0%
GCAGAGGACCAAGCAGCGAT+GGG - chr7_3:75634393-75634412 Msa1124470:five_prime_UTR 60.0%
CAGAGGACCAAGCAGCGATG+GGG - chr7_3:75634394-75634413 Msa1124470:five_prime_UTR 60.0%
!! GGGGACGGCGTTTTGGATTC+TGG - chr7_3:75634413-75634432 Msa1124470:five_prime_UTR 60.0%
!! CGGCGTTTTGGATTCTGGCC+CGG - chr7_3:75634418-75634437 Msa1124470:five_prime_UTR 60.0%
GGACCAAGCAGCGATGGGGA+CGG - chr7_3:75634398-75634417 Msa1124470:five_prime_UTR 65.0%
! CAGCGATGGGGACGGCGTTT+TGG - chr7_3:75634406-75634425 Msa1124470:five_prime_UTR 65.0%
ACGCCGTCCCCATCGCTGCT+TGG + chr7_3:75634404-75634423 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 75630771 75634650 75630771 ID=Msa1124470;Name=Msa1124470
chr7_3 mRNA 75630771 75634650 75630771 ID=Msa1124470-mRNA-1;Parent=Msa1124470;Name=Msa1124470-mRNA-1;_AED=0.02;_eAED=0.02;_QI=259|1|1|1|1|1|4|100|469
chr7_3 exon 75630771 75631051 75630771 ID=Msa1124470-mRNA-1:exon:20440;Parent=Msa1124470-mRNA-1
chr7_3 exon 75631227 75631875 75631227 ID=Msa1124470-mRNA-1:exon:20439;Parent=Msa1124470-mRNA-1
chr7_3 exon 75632832 75633277 75632832 ID=Msa1124470-mRNA-1:exon:20438;Parent=Msa1124470-mRNA-1
chr7_3 exon 75634258 75634650 75634258 ID=Msa1124470-mRNA-1:exon:20437;Parent=Msa1124470-mRNA-1
chr7_3 five_prime_UTR 75634392 75634650 75634392 ID=Msa1124470-mRNA-1:five_prime_utr;Parent=Msa1124470-mRNA-1
chr7_3 CDS 75634258 75634391 75634258 ID=Msa1124470-mRNA-1:cds;Parent=Msa1124470-mRNA-1
chr7_3 CDS 75632832 75633277 75632832 ID=Msa1124470-mRNA-1:cds;Parent=Msa1124470-mRNA-1
chr7_3 CDS 75631227 75631875 75631227 ID=Msa1124470-mRNA-1:cds;Parent=Msa1124470-mRNA-1
chr7_3 CDS 75630871 75631051 75630871 ID=Msa1124470-mRNA-1:cds;Parent=Msa1124470-mRNA-1
chr7_3 three_prime_UTR 75630771 75630870 75630771 ID=Msa1124470-mRNA-1:three_prime_utr;Parent=Msa1124470-mRNA-1
Gene Sequence

>Msa1124470

ATGTTCCAAACAATATGCATATTGCTAATTATCTCTGTTCTAAGTTCATTGTCACCACTTGGAACAGCAATGCTGAACTTAACTCTTCCTGGAACACACCCTGATCCTGATGCTGTTGCCCACGAAGTTCATAGGAAGGTGAATGCTTCAATGACAAGAAGGGAAATGCTATCTGGATCTGCATGCATGACTGGTAACCCAATTGATGATTGTTGGAAATGTGACCCAGAATGGCCCAACAATCGTCAAAGGTTAGCCGATTGTGCAATTGGGTTTGGTCAGTATGCAAAAGGAGGAAAAGGTGGTGAATTTTACGTTGTAACAGATTCCTCAGATGATGATGCTGTTACCCCAAAACCAGGTACATTAAGATATGGTGTGATAAAAAATGAACCATTGTGGATAGTGTTCCCTAGTAACATGATGATTAAGCTGAAGCAAGAGCTTATATTTAATAGTTATAAGACTATTGATGGACGTGGAGCTGATGTTCACATTGTGGGAGGAGGATGCATTACTTTGCAGTTTATTAGTAATGTTATCATACATAACATTCATATTCACCATTGTCACCCCTCAGGGAACACAAATGTGAGATCAAGTCCTGAACACTTTGGCTACAGAACAATGTCAGACGGAGATGGAATATCCATATTCGGTTCAAAAGACATATGGGTCGACCATTGCACACTTTCACATTGCAAAGACGGGCTAATAGACGCAGTAATGGGATCAACAGGAATAACAATATCCAACAATTTCATGTCACACCACAACGAAGTCATGCTTCTTGGACACAGCGATGACTACCTCCCAGACTCGGGAATGCAAGTCACAATCGCATTCAACCATTTTGGCGAGAAACTTGTTCAAAGGATGCCGCGATGCAGAAGAGGATACATCCATGTGGTCAACAATGATTTCACTGAGTGGGAAATGTATGCCATTGGTGGGAGTGGTGAACCAACTATTAACAGTCAAGGGAACCGTTACTTTGCGCCGATTAATCCTTTTGCTAAAGAGGTTACTAAGAGGGTTGAAACTGAGCAAAATAAGTGGAAAGGGTGGAATTGGAGGTCTGAGGGCGATGTTATGGTTAATGGTGCATTTTTTGTTACATCTGGTGACACTCTAGAGGTTAAGTATGAGAAGGCTTATAGTGTTGAGCCTCAGTCTGCTGATCGGATTGTTCTTCTTACCATGAACTCTGGTGTTCTTGGTAATGCAAGAGACAATAACGTGGGAATGTGGAGCAGAGGACCAAGCAGCGATGGGGACGGCGTTTTGGATTCTGGCCCGGATTACACAGATGATATGTCGGGGAGTGGGCGAGTGTTGTCATCTTCTTTTACTATGGTGATGTGCTTCTTGTTGTTTTATAGAGTGATACCATTAACAATTATTCAATGA

Protein sequence

>Msa1124470

MFQTICILLIISVLSSLSPLGTAMLNLTLPGTHPDPDAVAHEVHRKVNASMTRREMLSGSACMTGNPIDDCWKCDPEWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDDDAVTPKPGTLRYGVIKNEPLWIVFPSNMMIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHIHHCHPSGNTNVRSSPEHFGYRTMSDGDGISIFGSKDIWVDHCTLSHCKDGLIDAVMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYFAPINPFAKEVTKRVETEQNKWKGWNWRSEGDVMVNGAFFVTSGDTLEVKYEKAYSVEPQSADRIVLLTMNSGVLGNARDNNVGMWSRGPSSDGDGVLDSGPDYTDDMSGSGRVLSSSFTMVMCFLLFYRVIPLTIIQ*