Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1200500 | sp|P48020|HMDH1_SOLTU | 73.000 | 600 | 135 | 9 | 1 | 577 | 1 | 596 | 0.0 | 858 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1200500 | A9YVC5 | 98.285 | 583 | 7 | 1 | 1 | 580 | 1 | 583 | 0.0 | 1167 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000370 | Msa1200500 | 0.800448 | 1.434162e-48 | -8.615850e-47 |
Msa0013270 | Msa1200500 | 0.806615 | 7.549064e-50 | -8.615850e-47 |
Msa0038530 | Msa1200500 | 0.814068 | 1.859973e-51 | -8.615850e-47 |
Msa0044170 | Msa1200500 | 0.885348 | 8.787635e-72 | -8.615850e-47 |
Msa0044780 | Msa1200500 | -0.825371 | 4.861150e-54 | -8.615850e-47 |
Msa0045810 | Msa1200500 | 0.805802 | 1.119646e-49 | -8.615850e-47 |
Msa0046200 | Msa1200500 | 0.820195 | 7.799185e-53 | -8.615850e-47 |
Msa0077950 | Msa1200500 | 0.804653 | 1.948069e-49 | -8.615850e-47 |
Msa0081030 | Msa1200500 | 0.822866 | 1.883717e-53 | -8.615850e-47 |
Msa0084990 | Msa1200500 | 0.808328 | 3.268530e-50 | -8.615850e-47 |
Msa0090850 | Msa1200500 | 0.885682 | 6.589353e-72 | -8.615850e-47 |
Msa0106540 | Msa1200500 | 0.830108 | 3.534923e-55 | -8.615850e-47 |
Msa0604190 | Msa1200500 | 0.806728 | 7.144446e-50 | -8.615850e-47 |
Msa0605480 | Msa1200500 | 0.830552 | 2.753594e-55 | -8.615850e-47 |
Msa0645370 | Msa1200500 | 0.815385 | 9.500810e-52 | -8.615850e-47 |
Msa0645390 | Msa1200500 | 0.806649 | 7.423099e-50 | -8.615850e-47 |
Msa0646010 | Msa1200500 | 0.833684 | 4.629950e-56 | -8.615850e-47 |
Msa0646430 | Msa1200500 | 0.827212 | 1.772131e-54 | -8.615850e-47 |
Msa0646440 | Msa1200500 | 0.835994 | 1.213003e-56 | -8.615850e-47 |
Msa0660090 | Msa1200500 | 0.815849 | 7.487158e-52 | -8.615850e-47 |
Msa0663290 | Msa1200500 | 0.809617 | 1.732253e-50 | -8.615850e-47 |
Msa0664070 | Msa1200500 | 0.804128 | 2.506026e-49 | -8.615850e-47 |
Msa0685020 | Msa1200500 | 0.806781 | 6.962105e-50 | -8.615850e-47 |
Msa0686040 | Msa1200500 | 0.812224 | 4.720053e-51 | -8.615850e-47 |
Msa0708020 | Msa1200500 | 0.822083 | 2.863445e-53 | -8.615850e-47 |
Msa0719270 | Msa1200500 | 0.824505 | 7.782969e-54 | -8.615850e-47 |
Msa0742090 | Msa1200500 | -0.829290 | 5.592975e-55 | -8.615850e-47 |
Msa0745140 | Msa1200500 | 0.804688 | 1.915470e-49 | -8.615850e-47 |
Msa0753920 | Msa1200500 | 0.818731 | 1.681669e-52 | -8.615850e-47 |
Msa0773960 | Msa1200500 | 0.801110 | 1.050753e-48 | -8.615850e-47 |
Msa0776640 | Msa1200500 | 0.803590 | 3.242720e-49 | -8.615850e-47 |
Msa0807010 | Msa1200500 | 0.858975 | 5.694738e-63 | -8.615850e-47 |
Msa0823310 | Msa1200500 | -0.810707 | 1.008441e-50 | -8.615850e-47 |
Msa0825920 | Msa1200500 | 0.805705 | 1.173233e-49 | -8.615850e-47 |
Msa0832940 | Msa1200500 | 0.853200 | 2.795854e-61 | -8.615850e-47 |
Msa0840520 | Msa1200500 | 0.810739 | 9.920893e-51 | -8.615850e-47 |
Msa0132700 | Msa1200500 | 0.804025 | 2.633463e-49 | -8.615850e-47 |
Msa0137010 | Msa1200500 | -0.830121 | 3.510597e-55 | -8.615850e-47 |
Msa0139500 | Msa1200500 | 0.800193 | 1.616250e-48 | -8.615850e-47 |
Msa0160380 | Msa1200500 | 0.802991 | 4.314228e-49 | -8.615850e-47 |
Msa0189720 | Msa1200500 | 0.848873 | 4.644532e-60 | -8.615850e-47 |
Msa0205210 | Msa1200500 | 0.825035 | 5.837668e-54 | -8.615850e-47 |
Msa0206370 | Msa1200500 | 0.861373 | 1.073917e-63 | -8.615850e-47 |
Msa0232100 | Msa1200500 | 0.856816 | 2.490305e-62 | -8.615850e-47 |
Msa0371510 | Msa1200500 | 0.840268 | 9.631249e-58 | -8.615850e-47 |
Msa0386540 | Msa1200500 | 0.841279 | 5.230816e-58 | -8.615850e-47 |
Msa0386560 | Msa1200500 | 0.803449 | 3.467802e-49 | -8.615850e-47 |
Msa0386910 | Msa1200500 | 0.812980 | 3.226862e-51 | -8.615850e-47 |
Msa0419730 | Msa1200500 | 0.836670 | 8.168083e-57 | -8.615850e-47 |
Msa0419860 | Msa1200500 | 0.831641 | 1.487863e-55 | -8.615850e-47 |
Msa0434090 | Msa1200500 | 0.813642 | 2.308413e-51 | -8.615850e-47 |
Msa0437480 | Msa1200500 | 0.859930 | 2.941275e-63 | -8.615850e-47 |
Msa0437540 | Msa1200500 | 0.856601 | 2.881786e-62 | -8.615850e-47 |
Msa0440350 | Msa1200500 | 0.824869 | 6.389081e-54 | -8.615850e-47 |
Msa0450030 | Msa1200500 | 0.838559 | 2.676145e-57 | -8.615850e-47 |
Msa0467170 | Msa1200500 | 0.805348 | 1.394445e-49 | -8.615850e-47 |
Msa0467330 | Msa1200500 | 0.804669 | 1.933246e-49 | -8.615850e-47 |
Msa0477900 | Msa1200500 | 0.814718 | 1.336080e-51 | -8.615850e-47 |
Msa0481670 | Msa1200500 | 0.844155 | 9.006149e-59 | -8.615850e-47 |
Msa1029820 | Msa1200500 | 0.814672 | 1.367576e-51 | -8.615850e-47 |
Msa1029840 | Msa1200500 | 0.810482 | 1.127439e-50 | -8.615850e-47 |
Msa1036020 | Msa1200500 | 0.810813 | 9.563208e-51 | -8.615850e-47 |
Msa1042300 | Msa1200500 | 0.833215 | 6.060551e-56 | -8.615850e-47 |
Msa1068710 | Msa1200500 | 0.809047 | 2.294666e-50 | -8.615850e-47 |
Msa1068730 | Msa1200500 | 0.802357 | 5.830751e-49 | -8.615850e-47 |
Msa1068940 | Msa1200500 | 0.822775 | 1.977283e-53 | -8.615850e-47 |
Msa1076280 | Msa1200500 | 0.844761 | 6.188675e-59 | -8.615850e-47 |
Msa1078300 | Msa1200500 | 0.813662 | 2.284958e-51 | -8.615850e-47 |
Msa0260980 | Msa1200500 | 0.818728 | 1.684773e-52 | -8.615850e-47 |
Msa0278940 | Msa1200500 | 0.811753 | 5.979536e-51 | -8.615850e-47 |
Msa0279810 | Msa1200500 | 0.804814 | 1.803561e-49 | -8.615850e-47 |
Msa0310130 | Msa1200500 | 0.802393 | 5.730120e-49 | -8.615850e-47 |
Msa0319220 | Msa1200500 | 0.801345 | 9.409780e-49 | -8.615850e-47 |
Msa0321240 | Msa1200500 | 0.808548 | 2.933626e-50 | -8.615850e-47 |
Msa0326290 | Msa1200500 | 0.800352 | 1.500416e-48 | -8.615850e-47 |
Msa0336430 | Msa1200500 | 0.842845 | 2.016499e-58 | -8.615850e-47 |
Msa0336460 | Msa1200500 | 0.841431 | 4.772536e-58 | -8.615850e-47 |
Msa0336520 | Msa1200500 | 0.830984 | 2.158591e-55 | -8.615850e-47 |
Msa0349930 | Msa1200500 | 0.800171 | 1.632995e-48 | -8.615850e-47 |
Msa0354840 | Msa1200500 | 0.854635 | 1.079268e-61 | -8.615850e-47 |
Msa1133440 | Msa1200500 | -0.823593 | 1.274233e-53 | -8.615850e-47 |
Msa1149910 | Msa1200500 | 0.840288 | 9.517643e-58 | -8.615850e-47 |
Msa1156710 | Msa1200500 | 0.817299 | 3.543282e-52 | -8.615850e-47 |
Msa1156730 | Msa1200500 | 0.813329 | 2.704082e-51 | -8.615850e-47 |
Msa1179140 | Msa1200500 | 0.801630 | 8.221937e-49 | -8.615850e-47 |
Msa1179190 | Msa1200500 | 0.840721 | 7.332866e-58 | -8.615850e-47 |
Msa1192360 | Msa1200500 | 0.834750 | 2.501437e-56 | -8.615850e-47 |
Msa1200500 | Msa1206040 | 0.812622 | 3.864519e-51 | -8.615850e-47 |
Msa1200500 | Msa1206920 | 0.820488 | 6.678596e-53 | -8.615850e-47 |
Msa1200500 | Msa1217890 | 0.817112 | 3.903771e-52 | -8.615850e-47 |
Msa1200500 | Msa1233620 | 0.816478 | 5.417132e-52 | -8.615850e-47 |
Msa1200500 | Msa1246830 | 0.816119 | 6.516233e-52 | -8.615850e-47 |
Msa1200500 | Msa1253520 | 0.927342 | 1.343437e-91 | -8.615850e-47 |
Msa1200500 | Msa1255710 | 0.870091 | 1.895930e-66 | -8.615850e-47 |
Msa1200500 | Msa1257200 | 0.827377 | 1.618063e-54 | -8.615850e-47 |
Msa1200500 | Msa1265570 | 0.806107 | 9.658324e-50 | -8.615850e-47 |
Msa1200500 | Msa1275930 | 0.812440 | 4.234874e-51 | -8.615850e-47 |
Msa1200500 | Msa1286860 | -0.800151 | 1.648507e-48 | -8.615850e-47 |
Msa1200500 | Msa1288070 | 0.846211 | 2.503723e-59 | -8.615850e-47 |
Msa1200500 | Msa1293840 | 0.934845 | 2.147684e-96 | -8.615850e-47 |
Msa1200500 | Msa1296860 | 0.849266 | 3.610232e-60 | -8.615850e-47 |
Msa1200500 | Msa1297070 | 0.810804 | 9.607742e-51 | -8.615850e-47 |
Msa1200500 | Msa1314020 | 0.813807 | 2.123423e-51 | -8.615850e-47 |
Msa1200500 | Msa1328870 | 0.804955 | 1.685246e-49 | -8.615850e-47 |
Msa1200500 | Msa1334670 | 0.803458 | 3.452701e-49 | -8.615850e-47 |
Msa1200500 | Msa1362590 | 0.824521 | 7.715862e-54 | -8.615850e-47 |
Msa1200500 | Msa1363690 | 0.804403 | 2.197218e-49 | -8.615850e-47 |
Msa1200500 | Msa1365230 | 0.807416 | 5.109905e-50 | -8.615850e-47 |
Msa1200500 | Msa1368420 | 0.816325 | 5.862341e-52 | -8.615850e-47 |
Msa1200500 | Msa1368990 | 0.824094 | 9.722119e-54 | -8.615850e-47 |
Msa1200500 | Msa1381030 | 0.816580 | 5.139669e-52 | -8.615850e-47 |
Msa1200500 | Msa1383220 | 0.815318 | 9.830115e-52 | -8.615850e-47 |
Msa1200500 | Msa1385260 | 0.807452 | 5.020885e-50 | -8.615850e-47 |
Msa1200500 | Msa1389310 | 0.809846 | 1.546328e-50 | -8.615850e-47 |
Msa1200500 | Msa1405830 | 0.828418 | 9.091783e-55 | -8.615850e-47 |
Msa1200500 | Msa1407810 | 0.802925 | 4.450797e-49 | -8.615850e-47 |
Msa1200500 | Msa1417220 | 0.804362 | 2.240124e-49 | -8.615850e-47 |
Msa1200500 | Msa1421540 | 0.818210 | 2.207597e-52 | -8.615850e-47 |
Msa1200500 | Msa1433570 | 0.804635 | 1.964874e-49 | -8.615850e-47 |
Msa1200500 | Msa1436620 | 0.812772 | 3.582396e-51 | -8.615850e-47 |
Msa1200500 | Msa1437780 | 0.803607 | 3.216409e-49 | -8.615850e-47 |
Msa1200500 | Msa1438510 | 0.814591 | 1.425424e-51 | -8.615850e-47 |
Msa1200500 | Msa1440430 | 0.817737 | 2.824204e-52 | -8.615850e-47 |
Msa1200500 | Msa1450630 | -0.801702 | 7.947802e-49 | -8.615850e-47 |
Msa0484200 | Msa1200500 | 0.827557 | 1.464869e-54 | -8.615850e-47 |
Msa0487100 | Msa1200500 | 0.852997 | 3.197556e-61 | -8.615850e-47 |
Msa0487110 | Msa1200500 | 0.813192 | 2.898680e-51 | -8.615850e-47 |
Msa0511780 | Msa1200500 | 0.805498 | 1.296585e-49 | -8.615850e-47 |
Msa0523720 | Msa1200500 | 0.810597 | 1.064912e-50 | -8.615850e-47 |
Msa0549170 | Msa1200500 | 0.817059 | 4.011959e-52 | -8.615850e-47 |
Msa0549960 | Msa1200500 | 0.829301 | 5.557388e-55 | -8.615850e-47 |
Msa0549970 | Msa1200500 | 0.839704 | 1.351583e-57 | -8.615850e-47 |
Msa0567570 | Msa1200500 | 0.804498 | 2.098554e-49 | -8.615850e-47 |
Msa0587180 | Msa1200500 | 0.804709 | 1.896563e-49 | -8.615850e-47 |
Msa0880910 | Msa1200500 | 0.813284 | 2.767586e-51 | -8.615850e-47 |
Msa0881310 | Msa1200500 | 0.819283 | 1.259653e-52 | -8.615850e-47 |
Msa0967780 | Msa1200500 | 0.819771 | 9.749989e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1200500 | MtrunA17_Chr8g0370001 | 98.285 | 583 | 7 | 1 | 1 | 580 | 1 | 583 | 0.0 | 1167 |
Msa1200500 | MtrunA17_Chr5g0407521 | 77.184 | 561 | 110 | 5 | 28 | 580 | 17 | 567 | 0.0 | 874 |
Msa1200500 | MtrunA17_Chr5g0442831 | 74.655 | 580 | 112 | 6 | 1 | 580 | 1 | 545 | 0.0 | 864 |
Msa1200500 | MtrunA17_Chr5g0409021 | 77.390 | 544 | 101 | 3 | 37 | 580 | 21 | 542 | 0.0 | 856 |
Msa1200500 | MtrunA17_Chr5g0408991 | 77.390 | 544 | 101 | 3 | 37 | 580 | 21 | 542 | 0.0 | 856 |
Msa1200500 | MtrunA17_Chr5g0408981 | 77.390 | 544 | 101 | 3 | 37 | 580 | 21 | 542 | 0.0 | 856 |
Msa1200500 | MtrunA17_Chr5g0409001 | 77.206 | 544 | 102 | 3 | 37 | 580 | 21 | 542 | 0.0 | 856 |
Msa1200500 | MtrunA17_Chr5g0409011 | 77.390 | 544 | 101 | 3 | 37 | 580 | 21 | 542 | 0.0 | 856 |
Msa1200500 | MtrunA17_Chr5g0409031 | 77.737 | 539 | 102 | 2 | 42 | 580 | 30 | 550 | 0.0 | 853 |
Msa1200500 | MtrunA17_Chr5g0440371 | 69.257 | 592 | 143 | 6 | 1 | 580 | 1 | 565 | 0.0 | 794 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1200500 | AT1G76490.1 | 69.748 | 595 | 148 | 6 | 1 | 576 | 51 | 632 | 0.0 | 820 |
Msa1200500 | AT2G17370.1 | 71.322 | 537 | 132 | 6 | 42 | 575 | 37 | 554 | 0.0 | 761 |
Find 200 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATCTCTATGAAAATTATTT+TGG | 0.119826 | 8_1:-53136161 | None:intergenic |
GCCTCCGCCGTTTACCTTCT+AGG | 0.154239 | 8_1:+53132747 | Msa1200500:CDS |
TGTAAAGCTATTCATGTTTC+TGG | 0.186633 | 8_1:+53133287 | Msa1200500:CDS |
TGGTGGTGGTGGTAAGCTTC+TGG | 0.194075 | 8_1:-53132548 | None:intergenic |
TTTCGATTACGATTCGATAT+TGG | 0.207910 | 8_1:+53133127 | Msa1200500:CDS |
GCAAGCTCACGAAACGATTT+TGG | 0.210048 | 8_1:-53135554 | None:intergenic |
ATACCGACATCCAAAGTATT+TGG | 0.261590 | 8_1:-53136136 | None:intergenic |
CAAATTCCGGTTGGTGTTGC+GGG | 0.266196 | 8_1:+53133182 | Msa1200500:CDS |
TTCGATTACGATTCGATATT+GGG | 0.270716 | 8_1:+53133128 | Msa1200500:CDS |
TCAGCGGTGCAAACGATAAC+TGG | 0.306795 | 8_1:+53133074 | Msa1200500:CDS |
TCAGCCCTTGCTGGTGCTCT+TGG | 0.329249 | 8_1:+53134856 | Msa1200500:CDS |
TTTGCAATTTCCTCGTCTTC+CGG | 0.344235 | 8_1:-53132969 | None:intergenic |
AGAAAGCGGCAGCTGTAAAC+TGG | 0.347224 | 8_1:+53134710 | Msa1200500:CDS |
TCTTAATTTACTTGGTGTTA+AGG | 0.349199 | 8_1:+53135375 | Msa1200500:CDS |
AGCATTCAGCCTACAATTGC+TGG | 0.351295 | 8_1:+53134409 | Msa1200500:CDS |
GATAGGGTTTGTTCAAATTC+CGG | 0.351442 | 8_1:+53133169 | Msa1200500:CDS |
GTCTGCTAGTCTAGATTCTA+AGG | 0.353093 | 8_1:-53133024 | None:intergenic |
TGACTAGAGCACCTGTTGTT+AGG | 0.353746 | 8_1:+53133342 | Msa1200500:CDS |
AATAGCTTTACACCCTCTAT+TGG | 0.356892 | 8_1:-53133276 | None:intergenic |
CTTAATTTACTTGGTGTTAA+GGG | 0.362558 | 8_1:+53135376 | Msa1200500:CDS |
GGTGGTGGTGGTAAGCTTCT+GGG | 0.366246 | 8_1:-53132547 | None:intergenic |
GACGTATTGCCGCCGCTTTA+CGG | 0.366700 | 8_1:-53133049 | None:intergenic |
AAATTCTTGCCAGCAATTGT+AGG | 0.370194 | 8_1:-53134418 | None:intergenic |
CTTCTAGGTTTCTTCGGTAT+CGG | 0.393361 | 8_1:+53132762 | Msa1200500:CDS |
CCCTTGCTGGTGCTCTTGGT+GGG | 0.400026 | 8_1:+53134860 | Msa1200500:CDS |
AACATGCTTAAGAACCTAAC+TGG | 0.404216 | 8_1:+53134832 | Msa1200500:CDS |
ACAATTGGAGTTACCGTTGC+CGG | 0.405265 | 8_1:-53132900 | None:intergenic |
ATTCGATTCCGTTGCAGTAC+TGG | 0.409002 | 8_1:+53134445 | Msa1200500:CDS |
TACAGCTGCCGCTTTCTTGT+CGG | 0.410250 | 8_1:-53134704 | None:intergenic |
GCCCTTGCTGGTGCTCTTGG+TGG | 0.414829 | 8_1:+53134859 | Msa1200500:CDS |
CGGATCACGAACTTCCTTCC+CGG | 0.424473 | 8_1:+53132782 | Msa1200500:CDS |
CTAACTGGATCAGCCCTTGC+TGG | 0.430519 | 8_1:+53134847 | Msa1200500:CDS |
GTCACTAACGCTGTATTCTT+CGG | 0.431080 | 8_1:+53132609 | Msa1200500:CDS |
ATCTTCACCGGAGCTACAAT+TGG | 0.432713 | 8_1:-53132915 | None:intergenic |
CACCGACGTAAAACCACAAC+CGG | 0.432895 | 8_1:+53132881 | Msa1200500:CDS |
GGAGTTACCGTTGCCGGTTG+TGG | 0.433902 | 8_1:-53132894 | None:intergenic |
AAGGTCTTTGCCATCATTCA+CGG | 0.434392 | 8_1:-53134986 | None:intergenic |
ATAACTGGAAAATCTCTAGA+AGG | 0.440221 | 8_1:+53133089 | Msa1200500:CDS |
ATGGATGTCATTGGAATCTC+AGG | 0.445773 | 8_1:+53134544 | Msa1200500:CDS |
TCAGCTTGTCTTAATTTACT+TGG | 0.448427 | 8_1:+53135367 | Msa1200500:CDS |
GTTTACCTTCTAGGTTTCTT+CGG | 0.453882 | 8_1:+53132756 | Msa1200500:CDS |
AAAACAAGTGGCTAAACCTT+TGG | 0.455508 | 8_1:+53135858 | Msa1200500:three_prime_UTR |
GCAGCTGTAAACTGGATTGA+AGG | 0.457544 | 8_1:+53134718 | Msa1200500:CDS |
CAGCAAGGGCTGATCCAGTT+AGG | 0.457590 | 8_1:-53134846 | None:intergenic |
GGCACTTTGTCCAAATACTT+TGG | 0.466447 | 8_1:+53136126 | Msa1200500:three_prime_UTR |
CTCATGTCTGCAATTGCAGC+TGG | 0.470089 | 8_1:+53135481 | Msa1200500:CDS |
TCTTCTGTGTTGCTTAGAGA+TGG | 0.473694 | 8_1:+53133317 | Msa1200500:CDS |
TTAAGATAGATAACTAAAAC+CGG | 0.473755 | 8_1:-53136218 | None:intergenic |
TCTTCGTCGGAGAGATCATC+CGG | 0.475439 | 8_1:-53132801 | None:intergenic |
ATTCCAATGACATCCATGTC+AGG | 0.476477 | 8_1:-53134538 | None:intergenic |
AGTGGACCCGCAACACCAAC+CGG | 0.478518 | 8_1:-53133188 | None:intergenic |
AAGGACTATTGGTGGTGGCC+AGG | 0.478957 | 8_1:+53135667 | Msa1200500:three_prime_UTR |
AGTGCTGCTGGACACGGTCC+TGG | 0.480294 | 8_1:-53132852 | None:intergenic |
TCAAATTCCGGTTGGTGTTG+CGG | 0.481667 | 8_1:+53133181 | Msa1200500:CDS |
TTTGTCCTTATGAGAGGCAT+TGG | 0.482183 | 8_1:-53135611 | None:intergenic |
GGGGACCAATGCCTCTCATA+AGG | 0.484549 | 8_1:+53135606 | Msa1200500:three_prime_UTR |
CACTAATTTCTGTACCTCAA+TGG | 0.486090 | 8_1:-53135031 | None:intergenic |
TCTTCTCGCGCCAACGGTGG+AGG | 0.486592 | 8_1:-53132659 | None:intergenic |
AGAAGTGTTGAATTAGAAGA+TGG | 0.487882 | 8_1:+53135833 | Msa1200500:three_prime_UTR |
TCAGGTTGGTACTGTGGGAG+GGG | 0.488097 | 8_1:+53135324 | Msa1200500:intron |
ATCTCTAGAAGGTTTACCAT+TGG | 0.489315 | 8_1:+53133100 | Msa1200500:CDS |
ATAATTCAGGTTGGTACTGT+GGG | 0.489921 | 8_1:+53135319 | Msa1200500:intron |
TTCCCTGACATGGATGTCAT+TGG | 0.494706 | 8_1:+53134535 | Msa1200500:CDS |
TGCACCTGGAGATTCTGTGC+TGG | 0.497072 | 8_1:-53135401 | None:intergenic |
AGGTGCAAATGCTAGGCTAT+TGG | 0.497308 | 8_1:+53135417 | Msa1200500:CDS |
CGATACCGAAGAAACCTAGA+AGG | 0.505448 | 8_1:-53132761 | None:intergenic |
TTCGTAGATTCAAATATCGT+CGG | 0.507031 | 8_1:+53132450 | Msa1200500:five_prime_UTR |
GAAGAAACCTAGAAGGTAAA+CGG | 0.508337 | 8_1:-53132754 | None:intergenic |
GCCGACGAAAACCTAACAAC+AGG | 0.509711 | 8_1:-53133353 | None:intergenic |
ATCATTCACGGGTTCCATCA+TGG | 0.517111 | 8_1:-53134974 | None:intergenic |
TGTCACCATGCCTTCCATTG+AGG | 0.519547 | 8_1:+53135017 | Msa1200500:CDS |
GGTGTGTGAGGCTGTTATTA+AGG | 0.520587 | 8_1:+53134756 | Msa1200500:CDS |
CTAGAAGGTTTACCATTGGA+AGG | 0.521102 | 8_1:+53133104 | Msa1200500:CDS |
TCGGTGTCGACAAGTGCTGC+TGG | 0.521714 | 8_1:-53132864 | None:intergenic |
AATGCCTCCCACATGGACTA+AGG | 0.524949 | 8_1:-53135791 | None:intergenic |
GGAATACGACGGAATTGAAC+CGG | 0.526078 | 8_1:-53133003 | None:intergenic |
TGTTGCGGGTCCACTGTTGT+TGG | 0.526588 | 8_1:+53133196 | Msa1200500:CDS |
GAGTTGTTAATAATAGTCTC+TGG | 0.526987 | 8_1:+53136043 | Msa1200500:three_prime_UTR |
CACAACAATAAACTTGTAGA+GGG | 0.527980 | 8_1:+53135586 | Msa1200500:three_prime_UTR |
GAACTCTCAACATTCTGAGC+AGG | 0.528481 | 8_1:-53134940 | None:intergenic |
GGTAACTCCAATTGTAGCTC+CGG | 0.530278 | 8_1:+53132908 | Msa1200500:CDS |
TGCAGTACTGGTGATGCCAT+GGG | 0.530758 | 8_1:+53134457 | Msa1200500:CDS |
AATCTCCAGGTGCAAATGCT+AGG | 0.530949 | 8_1:+53135410 | Msa1200500:CDS |
ACCTAGAAGGTAAACGGCGG+AGG | 0.531795 | 8_1:-53132748 | None:intergenic |
TGTCTACATAGCCACTGGTC+AGG | 0.531826 | 8_1:+53134915 | Msa1200500:CDS |
TACGGATCTTCTCGCGCCAA+CGG | 0.532788 | 8_1:-53132665 | None:intergenic |
GAAGACTAGTGTGGAGGCAC+TGG | 0.533947 | 8_1:+53134801 | Msa1200500:CDS |
TTTAAGGGATATTCCTGTGC+CGG | 0.535342 | 8_1:+53136199 | Msa1200500:three_prime_UTR |
TTGGAAAATGAGAGGGAGGG+AGG | 0.535656 | 8_1:-53132335 | None:intergenic |
AGGTCTTTGCCATCATTCAC+GGG | 0.539685 | 8_1:-53134985 | None:intergenic |
GGCGCCAGCACAGAATCTCC+AGG | 0.540230 | 8_1:+53135397 | Msa1200500:CDS |
TTCAAAAGGACTATTGGTGG+TGG | 0.540230 | 8_1:+53135662 | Msa1200500:three_prime_UTR |
TCACCGCCGGCGGGAGAACG+TGG | 0.541209 | 8_1:-53132513 | None:intergenic |
TCTTCCGGTGTGAGATTCAC+CGG | 0.542834 | 8_1:-53132954 | None:intergenic |
CTCGCCCGCGAGTACTGAAC+CGG | 0.544649 | 8_1:-53135452 | None:intergenic |
TGAAATACAACAGATCTAGC+AGG | 0.545624 | 8_1:+53135524 | Msa1200500:CDS |
TCGACAAGTGCTGCTGGACA+CGG | 0.546888 | 8_1:-53132858 | None:intergenic |
GCGGGTCCACTGTTGTTGGA+TGG | 0.547013 | 8_1:+53133200 | Msa1200500:CDS |
TTCAGGTTGGTACTGTGGGA+GGG | 0.548296 | 8_1:+53135323 | Msa1200500:intron |
TGTCCAAATACTTTGGATGT+CGG | 0.549454 | 8_1:+53136133 | Msa1200500:three_prime_UTR |
TTGGTTGGAAAATGAGAGGG+AGG | 0.550703 | 8_1:-53132339 | None:intergenic |
TTGCAGTACTGGTGATGCCA+TGG | 0.550722 | 8_1:+53134456 | Msa1200500:CDS |
TCAGAGTGACTTCCCTGACA+TGG | 0.551867 | 8_1:+53134525 | Msa1200500:CDS |
AGTGCCAACAGCAAAAGAAA+AGG | 0.551964 | 8_1:-53136109 | None:intergenic |
CAGTGTTGTGAGATGCCGAT+AGG | 0.552150 | 8_1:+53133152 | Msa1200500:CDS |
TTCTCACTGTATTACCATGA+TGG | 0.554608 | 8_1:+53134960 | Msa1200500:CDS |
TCTGCTGTCTACATAGCCAC+TGG | 0.555493 | 8_1:+53134910 | Msa1200500:CDS |
TAGATAACTAAAACCGGCAC+AGG | 0.557175 | 8_1:-53136212 | None:intergenic |
GGATCTTCTCGCGCCAACGG+TGG | 0.558078 | 8_1:-53132662 | None:intergenic |
GAGACAGTGACGACATGAAG+AGG | 0.559712 | 8_1:-53132696 | None:intergenic |
GTACCCATGGCTACCACTGA+AGG | 0.561001 | 8_1:+53133236 | Msa1200500:CDS |
CTATTGGCCACCATTGTAGC+CGG | 0.563412 | 8_1:+53135433 | Msa1200500:CDS |
CGTAAAACCACAACCGGCAA+CGG | 0.563493 | 8_1:+53132887 | Msa1200500:CDS |
ACAGAAAAGGTTGCATCTAG+TGG | 0.563519 | 8_1:+53135759 | Msa1200500:three_prime_UTR |
ATTCAGGTTGGTACTGTGGG+AGG | 0.563884 | 8_1:+53135322 | Msa1200500:intron |
CTTCCTCCACGTTCTCCCGC+CGG | 0.565279 | 8_1:+53132507 | Msa1200500:CDS |
AATAATTCAGGTTGGTACTG+TGG | 0.566379 | 8_1:+53135318 | Msa1200500:intron |
ACACCCTTCAGTGGTAGCCA+TGG | 0.566660 | 8_1:-53133240 | None:intergenic |
AAAGCTATTCATGTTTCTGG+TGG | 0.566843 | 8_1:+53133290 | Msa1200500:CDS |
ACACAACAATAAACTTGTAG+AGG | 0.567966 | 8_1:+53135585 | Msa1200500:three_prime_UTR |
TGACACCATGTTCATCCCCA+TGG | 0.567983 | 8_1:-53134473 | None:intergenic |
AAGCTTACCACCACCACCAC+CGG | 0.569453 | 8_1:+53132552 | Msa1200500:CDS |
CAGGTTGGTACTGTGGGAGG+GGG | 0.569796 | 8_1:+53135325 | Msa1200500:intron |
ATGATGGAACCCGTGAATGA+TGG | 0.569819 | 8_1:+53134976 | Msa1200500:CDS |
AGTGTTGTGAGATGCCGATA+GGG | 0.570212 | 8_1:+53133153 | Msa1200500:CDS |
CCCACCAAGAGCACCAGCAA+GGG | 0.572086 | 8_1:-53134860 | None:intergenic |
CAGCTGTAAACTGGATTGAA+GGG | 0.573658 | 8_1:+53134719 | Msa1200500:CDS |
CTGTACCTCAATGGAAGGCA+TGG | 0.573863 | 8_1:-53135022 | None:intergenic |
ACAACTTCATAGATCTTCAC+CGG | 0.578120 | 8_1:-53132927 | None:intergenic |
AATTTCTGTACCTCAATGGA+AGG | 0.582480 | 8_1:-53135027 | None:intergenic |
ATTGCAAAATCAGTTGTCAC+CGG | 0.584238 | 8_1:+53132984 | Msa1200500:CDS |
GAGTACTGAACCGGCTACAA+TGG | 0.589672 | 8_1:-53135443 | None:intergenic |
GAATCTCACACCGGAAGACG+AGG | 0.590710 | 8_1:+53132959 | Msa1200500:CDS |
GGCTGTTATTAAGGAAGAGG+TGG | 0.590912 | 8_1:+53134765 | Msa1200500:CDS |
AGCAGACTGCCGTAAAGCGG+CGG | 0.591467 | 8_1:+53133040 | Msa1200500:CDS |
TTGAGCTCAACAAGAGCATG+TGG | 0.593447 | 8_1:+53135723 | Msa1200500:three_prime_UTR |
AAAGAAGACTCTCGAAAACC+AGG | 0.593503 | 8_1:+53132834 | Msa1200500:CDS |
TGTTAATAATAGTCTCTGGT+TGG | 0.595109 | 8_1:+53136047 | Msa1200500:three_prime_UTR |
AAGAATCAAACTAATGCCAA+AGG | 0.595697 | 8_1:-53135874 | None:intergenic |
GAAAGTGTTGAAGACTAGTG+TGG | 0.595958 | 8_1:+53134792 | Msa1200500:CDS |
TGAGGCTGTTATTAAGGAAG+AGG | 0.596038 | 8_1:+53134762 | Msa1200500:CDS |
CTTGTTGCAAGTACCAATAG+AGG | 0.597773 | 8_1:+53133263 | Msa1200500:CDS |
GGGATGAACATGGTGTCAAA+AGG | 0.598387 | 8_1:+53134478 | Msa1200500:CDS |
CACCCTTCAGTGGTAGCCAT+GGG | 0.598933 | 8_1:-53133239 | None:intergenic |
GGCGGCAATACGTCGTTCAG+CGG | 0.601502 | 8_1:+53133058 | Msa1200500:CDS |
TTTAGCGAGAATCTCTTCGT+CGG | 0.601897 | 8_1:-53132814 | None:intergenic |
GGGTTTGTTCAAATTCCGGT+TGG | 0.602041 | 8_1:+53133173 | Msa1200500:CDS |
TTGATTGGTTGGAAAATGAG+AGG | 0.605148 | 8_1:-53132343 | None:intergenic |
GGAATTTGAACAAACCCTAT+CGG | 0.606204 | 8_1:-53133167 | None:intergenic |
TGTAGCCGGTTCAGTACTCG+CGG | 0.607917 | 8_1:+53135447 | Msa1200500:CDS |
GAGGAAGAGATTTAAGTCTC+CGG | 0.609171 | 8_1:-53132491 | None:intergenic |
GCAAGTGTATCAAAATTAAG+CGG | 0.609171 | 8_1:-53133413 | None:intergenic |
AGTCACTCTGAAGAAAATCA+AGG | 0.609778 | 8_1:-53134513 | None:intergenic |
AATAGCCTAGCATTTGCACC+TGG | 0.614511 | 8_1:-53135415 | None:intergenic |
TACCCATGGCTACCACTGAA+GGG | 0.614982 | 8_1:+53133237 | Msa1200500:CDS |
TACTGAACCGGCTACAATGG+TGG | 0.616136 | 8_1:-53135440 | None:intergenic |
GTAAACTGGATTGAAGGGCG+TGG | 0.616240 | 8_1:+53134724 | Msa1200500:CDS |
TGATGCCATGGGGATGAACA+TGG | 0.618362 | 8_1:+53134468 | Msa1200500:CDS |
TTCCAATGACATCCATGTCA+GGG | 0.618523 | 8_1:-53134537 | None:intergenic |
TTTCTGTTCCGACAAGAAAG+CGG | 0.619756 | 8_1:+53134696 | Msa1200500:CDS |
AAAAGACAATGCCTCCCACA+TGG | 0.620407 | 8_1:-53135798 | None:intergenic |
CCTCCACGTTCTCCCGCCGG+CGG | 0.627464 | 8_1:+53132510 | Msa1200500:CDS |
GCATGGTGACAGAAATGTGA+AGG | 0.628287 | 8_1:-53135005 | None:intergenic |
TGATTGGTTGGAAAATGAGA+GGG | 0.628469 | 8_1:-53132342 | None:intergenic |
ATTCAACACCTTAGTCCATG+TGG | 0.628776 | 8_1:+53135783 | Msa1200500:three_prime_UTR |
GATCTATGAAGTTGTTGCAC+CGG | 0.629263 | 8_1:+53132935 | Msa1200500:CDS |
GAAATACAACAGATCTAGCA+GGG | 0.634441 | 8_1:+53135525 | Msa1200500:CDS |
ACCCACCAAGAGCACCAGCA+AGG | 0.640374 | 8_1:-53134861 | None:intergenic |
TGGCATCACCAGTACTGCAA+CGG | 0.640383 | 8_1:-53134453 | None:intergenic |
TCGTAATCGAAACCTTCCAA+TGG | 0.642272 | 8_1:-53133116 | None:intergenic |
TAGAAGATGGAGAAAACAAG+TGG | 0.643097 | 8_1:+53135846 | Msa1200500:three_prime_UTR |
GACTATTGGTGGTGGCCAGG+TGG | 0.643231 | 8_1:+53135670 | Msa1200500:three_prime_UTR |
TGCAACAAGACACCCTTCAG+TGG | 0.643810 | 8_1:-53133249 | None:intergenic |
TATAAGAGAAACGATGGCGG+CGG | 0.644367 | 8_1:-53132724 | None:intergenic |
GTCGGAGAGATCATCCGGGA+AGG | 0.645591 | 8_1:-53132796 | None:intergenic |
TGGTAAGTCTGTGGTGTGTG+AGG | 0.646294 | 8_1:+53134744 | Msa1200500:CDS |
TTGTTGCAAGTACCAATAGA+GGG | 0.651666 | 8_1:+53133264 | Msa1200500:CDS |
TTCAACACCTTAGTCCATGT+GGG | 0.652759 | 8_1:+53135784 | Msa1200500:three_prime_UTR |
AGTTGAGTACACTGTACCCA+TGG | 0.653086 | 8_1:+53133223 | Msa1200500:CDS |
TGGTTGGAAAATGAGAGGGA+GGG | 0.663143 | 8_1:-53132338 | None:intergenic |
GGAGGCTATAAGAGAAACGA+TGG | 0.663583 | 8_1:-53132730 | None:intergenic |
CATGAAGAGGAGTTTCCGTA+CGG | 0.667785 | 8_1:-53132683 | None:intergenic |
GTTTATTGTTGTGTTGTGTG+AGG | 0.668370 | 8_1:-53135576 | None:intergenic |
CCGCCGGCGGGAGAACGTGG+AGG | 0.669997 | 8_1:-53132510 | None:intergenic |
GGCTATAAGAGAAACGATGG+CGG | 0.673455 | 8_1:-53132727 | None:intergenic |
TGAAGGGCGTGGTAAGTCTG+TGG | 0.674377 | 8_1:+53134735 | Msa1200500:CDS |
CTTCGTCGGAGAGATCATCC+GGG | 0.678047 | 8_1:-53132800 | None:intergenic |
GTAGCCGGTTCAGTACTCGC+GGG | 0.680240 | 8_1:+53135448 | Msa1200500:CDS |
CTAGATTCTAAGGAATACGA+CGG | 0.686525 | 8_1:-53133014 | None:intergenic |
TTGGCGCGAGAAGATCCGTA+CGG | 0.687150 | 8_1:+53132668 | Msa1200500:CDS |
ACAACAATAAACTTGTAGAG+GGG | 0.687899 | 8_1:+53135587 | Msa1200500:three_prime_UTR |
TCAACTCCATCCAACAACAG+TGG | 0.690537 | 8_1:-53133206 | None:intergenic |
CTGAGCAGGATCCTGACCAG+TGG | 0.691176 | 8_1:-53134926 | None:intergenic |
ACTAGCAGACTGCCGTAAAG+CGG | 0.691614 | 8_1:+53133037 | Msa1200500:CDS |
AACACCTTAGTCCATGTGGG+AGG | 0.694617 | 8_1:+53135787 | Msa1200500:three_prime_UTR |
AGTGTTGAAGACTAGTGTGG+AGG | 0.700194 | 8_1:+53134795 | Msa1200500:CDS |
GTGGAGGAGAAAATACGCGA+CGG | 0.712614 | 8_1:-53132643 | None:intergenic |
GCAGTACTGGTGATGCCATG+GGG | 0.721193 | 8_1:+53134458 | Msa1200500:CDS |
TGCACCGGTGAATCTCACAC+CGG | 0.728332 | 8_1:+53132950 | Msa1200500:CDS |
GAAACCTAGAAGGTAAACGG+CGG | 0.781690 | 8_1:-53132751 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTAACAAAATTTAGATTT+TGG | - | chr8_1:53134001-53134020 | None:intergenic | 10.0% |
!!! | TTTTTAGTAGTATTTTTCTT+TGG | + | chr8_1:53133488-53133507 | Msa1200500:intron | 15.0% |
!!! | TTTTAGTAGTATTTTTCTTT+GGG | + | chr8_1:53133489-53133508 | Msa1200500:intron | 15.0% |
!!! | ATTTTATCTTGTAGAAAATT+AGG | + | chr8_1:53133781-53133800 | Msa1200500:intron | 15.0% |
!!! | AATTTTAAAATTTGAACCAA+CGG | - | chr8_1:53133853-53133872 | None:intergenic | 15.0% |
!!! | ATCTAAATTTTGTTAAATCA+TGG | + | chr8_1:53134003-53134022 | Msa1200500:intron | 15.0% |
!!! | TTTCTGTTTTTAATAATTAC+TGG | + | chr8_1:53134292-53134311 | Msa1200500:intron | 15.0% |
!!! | TTCTGTTTTTAATAATTACT+GGG | + | chr8_1:53134293-53134312 | Msa1200500:intron | 15.0% |
!! | TTCATTCATTAACAATTTAA+TGG | + | chr8_1:53134351-53134370 | Msa1200500:intron | 15.0% |
!! | TCATTCATTAACAATTTAAT+GGG | + | chr8_1:53134352-53134371 | Msa1200500:intron | 15.0% |
!! | TATGTTTATTTAATTCCAAA+GGG | - | chr8_1:53135059-53135078 | None:intergenic | 15.0% |
!! | TTATGTTTATTTAATTCCAA+AGG | - | chr8_1:53135060-53135079 | None:intergenic | 15.0% |
!!! | TAGATTTTGTTTAATAATTC+AGG | + | chr8_1:53135306-53135325 | Msa1200500:intron | 15.0% |
!!! | ACTAAAATAACAAATTTTTG+AGG | - | chr8_1:53135957-53135976 | None:intergenic | 15.0% |
!!! | AATCTCTATGAAAATTATTT+TGG | - | chr8_1:53136164-53136183 | None:intergenic | 15.0% |
!! | GATTGAATTAAAAAAGTTGT+TGG | - | chr8_1:53132255-53132274 | None:intergenic | 20.0% |
!!! | TTTGAAAGTTTTTGTTTGAT+TGG | - | chr8_1:53132361-53132380 | None:intergenic | 20.0% |
!! | TCATAGATATGAAATGATTT+AGG | + | chr8_1:53133749-53133768 | Msa1200500:intron | 20.0% |
!! | CATAGATATGAAATGATTTA+GGG | + | chr8_1:53133750-53133769 | Msa1200500:intron | 20.0% |
!! | AAGAAGAGATAAAATATGTT+TGG | + | chr8_1:53133924-53133943 | Msa1200500:intron | 20.0% |
!!! | TCTGTTTTTAATAATTACTG+GGG | + | chr8_1:53134294-53134313 | Msa1200500:intron | 20.0% |
!! | CATATTTATAAGCAAGTTTA+GGG | + | chr8_1:53135223-53135242 | Msa1200500:intron | 20.0% |
!! | ATATTTATAAGCAAGTTTAG+GGG | + | chr8_1:53135224-53135243 | Msa1200500:intron | 20.0% |
!! | TATTAAACAAAATCTAGCTA+AGG | - | chr8_1:53135302-53135321 | None:intergenic | 20.0% |
!!! | TTTTGTTTAATAATTCAGGT+TGG | + | chr8_1:53135310-53135329 | Msa1200500:intron | 20.0% |
!! | TAAGAACAAAAAAACAGAAA+AGG | + | chr8_1:53135746-53135765 | Msa1200500:three_prime_UTR | 20.0% |
!!! | AAAAAAAAAGTGTATAGTGA+TGG | - | chr8_1:53136073-53136092 | None:intergenic | 20.0% |
!!! | ATAATTTTCATAGAGATTCT+TGG | + | chr8_1:53136166-53136185 | Msa1200500:three_prime_UTR | 20.0% |
!! | TTAAGATAGATAACTAAAAC+CGG | - | chr8_1:53136221-53136240 | None:intergenic | 20.0% |
!!! | AAAGTTTTTGTTTGATTGGT+TGG | - | chr8_1:53132357-53132376 | None:intergenic | 25.0% |
! | AAATATCGTCGGAAAAAAAA+TGG | + | chr8_1:53132461-53132480 | Msa1200500:exon | 25.0% |
! | AATTTATGTCTTTGATCCAA+CGG | + | chr8_1:53133869-53133888 | Msa1200500:intron | 25.0% |
! | TTGTTCTTAGATTAACCTAA+AGG | + | chr8_1:53134159-53134178 | Msa1200500:intron | 25.0% |
! | TAACCTAAAGGTTTATAGAA+TGG | + | chr8_1:53134171-53134190 | Msa1200500:intron | 25.0% |
! | AAACCATTCTATAAACCTTT+AGG | - | chr8_1:53134177-53134196 | None:intergenic | 25.0% |
! | AATAGGATCCAATTTATGAA+GGG | + | chr8_1:53134229-53134248 | Msa1200500:intron | 25.0% |
!! | TTTTCTACTACATGTATGTT+TGG | - | chr8_1:53135131-53135150 | None:intergenic | 25.0% |
! | GCATATTTATAAGCAAGTTT+AGG | + | chr8_1:53135222-53135241 | Msa1200500:intron | 25.0% |
! | TAGCTAAGGATACAATAAAA+TGG | - | chr8_1:53135288-53135307 | None:intergenic | 25.0% |
!!! | TCTTAATTTACTTGGTGTTA+AGG | + | chr8_1:53135375-53135394 | Msa1200500:CDS | 25.0% |
!!! | CTTAATTTACTTGGTGTTAA+GGG | + | chr8_1:53135376-53135395 | Msa1200500:CDS | 25.0% |
CAAAAAACGAAGGAGAAAAA+TGG | - | chr8_1:53132420-53132439 | None:intergenic | 30.0% | |
AATGCAGAAACAAAAAACGA+AGG | - | chr8_1:53132430-53132449 | None:intergenic | 30.0% | |
TTCGTAGATTCAAATATCGT+CGG | + | chr8_1:53132450-53132469 | Msa1200500:five_prime_UTR | 30.0% | |
ATAACTGGAAAATCTCTAGA+AGG | + | chr8_1:53133089-53133108 | Msa1200500:CDS | 30.0% | |
TTTCGATTACGATTCGATAT+TGG | + | chr8_1:53133127-53133146 | Msa1200500:CDS | 30.0% | |
TTCGATTACGATTCGATATT+GGG | + | chr8_1:53133128-53133147 | Msa1200500:CDS | 30.0% | |
TGTAAAGCTATTCATGTTTC+TGG | + | chr8_1:53133287-53133306 | Msa1200500:CDS | 30.0% | |
GCAAGTGTATCAAAATTAAG+CGG | - | chr8_1:53133416-53133435 | None:intergenic | 30.0% | |
TTGGGTCATGAGTTATTATT+AGG | + | chr8_1:53133507-53133526 | Msa1200500:intron | 30.0% | |
TGATATGAAACTATGAAGCA+TGG | + | chr8_1:53133559-53133578 | Msa1200500:intron | 30.0% | |
TCTCAAATTATTAGCAGTGT+CGG | + | chr8_1:53133678-53133697 | Msa1200500:intron | 30.0% | |
ATATCTATGAAGCACAGATA+CGG | - | chr8_1:53133739-53133758 | None:intergenic | 30.0% | |
! | TCTTGTAGAAAATTAGGTTG+AGG | + | chr8_1:53133787-53133806 | Msa1200500:intron | 30.0% |
!! | CTTGTAGAAAATTAGGTTGA+GGG | + | chr8_1:53133788-53133807 | Msa1200500:intron | 30.0% |
TTGGAGTTTCACAAAATCAT+GGG | - | chr8_1:53133982-53134001 | None:intergenic | 30.0% | |
! | TTTGGAGTTTCACAAAATCA+TGG | - | chr8_1:53133983-53134002 | None:intergenic | 30.0% |
CAATAGGATCCAATTTATGA+AGG | + | chr8_1:53134228-53134247 | Msa1200500:intron | 30.0% | |
! | TGGGGTTGTTCATTTAAAAT+GGG | + | chr8_1:53134312-53134331 | Msa1200500:intron | 30.0% |
AATTCAACCATAACAAGGAA+CGG | - | chr8_1:53134622-53134641 | None:intergenic | 30.0% | |
CTTTCAATTCAACCATAACA+AGG | - | chr8_1:53134627-53134646 | None:intergenic | 30.0% | |
! | AATGTTTTCATGCACACTAT+TGG | + | chr8_1:53134655-53134674 | Msa1200500:intron | 30.0% |
TTGAAAAAGAAAACCATGCT+CGG | - | chr8_1:53135186-53135205 | None:intergenic | 30.0% | |
TCAGCTTGTCTTAATTTACT+TGG | + | chr8_1:53135367-53135386 | Msa1200500:CDS | 30.0% | |
ACACAACAATAAACTTGTAG+AGG | + | chr8_1:53135585-53135604 | Msa1200500:three_prime_UTR | 30.0% | |
CACAACAATAAACTTGTAGA+GGG | + | chr8_1:53135586-53135605 | Msa1200500:three_prime_UTR | 30.0% | |
ACAACAATAAACTTGTAGAG+GGG | + | chr8_1:53135587-53135606 | Msa1200500:three_prime_UTR | 30.0% | |
!! | TTGGTTTTCAAAAGGACTAT+TGG | + | chr8_1:53135656-53135675 | Msa1200500:three_prime_UTR | 30.0% |
!!! | CATTTTTTTTATTCACCACC+TGG | - | chr8_1:53135688-53135707 | None:intergenic | 30.0% |
!! | AGAAGTGTTGAATTAGAAGA+TGG | + | chr8_1:53135833-53135852 | Msa1200500:three_prime_UTR | 30.0% |
AAGAATCAAACTAATGCCAA+AGG | - | chr8_1:53135877-53135896 | None:intergenic | 30.0% | |
GAGTTGTTAATAATAGTCTC+TGG | + | chr8_1:53136043-53136062 | Msa1200500:three_prime_UTR | 30.0% | |
TGTTAATAATAGTCTCTGGT+TGG | + | chr8_1:53136047-53136066 | Msa1200500:three_prime_UTR | 30.0% | |
! | TGATTGGTTGGAAAATGAGA+GGG | - | chr8_1:53132345-53132364 | None:intergenic | 35.0% |
! | TTGATTGGTTGGAAAATGAG+AGG | - | chr8_1:53132346-53132365 | None:intergenic | 35.0% |
GAAGAAACCTAGAAGGTAAA+CGG | - | chr8_1:53132757-53132776 | None:intergenic | 35.0% | |
GTTTACCTTCTAGGTTTCTT+CGG | + | chr8_1:53132756-53132775 | Msa1200500:CDS | 35.0% | |
ACAACTTCATAGATCTTCAC+CGG | - | chr8_1:53132930-53132949 | None:intergenic | 35.0% | |
ATTGCAAAATCAGTTGTCAC+CGG | + | chr8_1:53132984-53133003 | Msa1200500:CDS | 35.0% | |
! | CTAGATTCTAAGGAATACGA+CGG | - | chr8_1:53133017-53133036 | None:intergenic | 35.0% |
! | ATCTCTAGAAGGTTTACCAT+TGG | + | chr8_1:53133100-53133119 | Msa1200500:CDS | 35.0% |
GGAATTTGAACAAACCCTAT+CGG | - | chr8_1:53133170-53133189 | None:intergenic | 35.0% | |
! | GATAGGGTTTGTTCAAATTC+CGG | + | chr8_1:53133169-53133188 | Msa1200500:CDS | 35.0% |
TTGTTGCAAGTACCAATAGA+GGG | + | chr8_1:53133264-53133283 | Msa1200500:CDS | 35.0% | |
! | AATAGCTTTACACCCTCTAT+TGG | - | chr8_1:53133279-53133298 | None:intergenic | 35.0% |
!! | AAAGCTATTCATGTTTCTGG+TGG | + | chr8_1:53133290-53133309 | Msa1200500:CDS | 35.0% |
!! | TGCTGAGTTGAAGTTTTTCT+TGG | + | chr8_1:53133385-53133404 | Msa1200500:CDS | 35.0% |
ATCATGTGTCAGTATCATGT+CGG | - | chr8_1:53133638-53133657 | None:intergenic | 35.0% | |
!! | AATTAGGTTGAGGGATTTGT+TGG | + | chr8_1:53133797-53133816 | Msa1200500:intron | 35.0% |
!! | TGAGGGATTTGTTGGTTAAA+TGG | + | chr8_1:53133805-53133824 | Msa1200500:intron | 35.0% |
TGGAGTTTCACAAAATCATG+GGG | - | chr8_1:53133981-53134000 | None:intergenic | 35.0% | |
ACTAACAATATCACGATGAG+TGG | - | chr8_1:53134029-53134048 | None:intergenic | 35.0% | |
AAAACAACTGTTTGTCGAAG+AGG | - | chr8_1:53134125-53134144 | None:intergenic | 35.0% | |
!!! | TATAGAATGGTTTTAGCCGT+TGG | + | chr8_1:53134184-53134203 | Msa1200500:intron | 35.0% |
CTGGGGTTGTTCATTTAAAA+TGG | + | chr8_1:53134311-53134330 | Msa1200500:intron | 35.0% | |
!! | ACAATTTAATGGGTTTGTGC+AGG | + | chr8_1:53134362-53134381 | Msa1200500:intron | 35.0% |
AAATTCTTGCCAGCAATTGT+AGG | - | chr8_1:53134421-53134440 | None:intergenic | 35.0% | |
! | AGTCACTCTGAAGAAAATCA+AGG | - | chr8_1:53134516-53134535 | None:intergenic | 35.0% |
! | TTTCATGCACACTATTGGTT+TGG | + | chr8_1:53134660-53134679 | Msa1200500:intron | 35.0% |
AACATGCTTAAGAACCTAAC+TGG | + | chr8_1:53134832-53134851 | Msa1200500:CDS | 35.0% | |
TTCTCACTGTATTACCATGA+TGG | + | chr8_1:53134960-53134979 | Msa1200500:CDS | 35.0% | |
AATTTCTGTACCTCAATGGA+AGG | - | chr8_1:53135030-53135049 | None:intergenic | 35.0% | |
CACTAATTTCTGTACCTCAA+TGG | - | chr8_1:53135034-53135053 | None:intergenic | 35.0% | |
CATTGAGGTACAGAAATTAG+TGG | + | chr8_1:53135032-53135051 | Msa1200500:intron | 35.0% | |
TTTAGGGGAGCTAAATTGAA+AGG | + | chr8_1:53135239-53135258 | Msa1200500:intron | 35.0% | |
TTAGGGGAGCTAAATTGAAA+GGG | + | chr8_1:53135240-53135259 | Msa1200500:intron | 35.0% | |
!! | AATAATTCAGGTTGGTACTG+TGG | + | chr8_1:53135318-53135337 | Msa1200500:intron | 35.0% |
!! | ATAATTCAGGTTGGTACTGT+GGG | + | chr8_1:53135319-53135338 | Msa1200500:intron | 35.0% |
TGAAATACAACAGATCTAGC+AGG | + | chr8_1:53135524-53135543 | Msa1200500:CDS | 35.0% | |
GAAATACAACAGATCTAGCA+GGG | + | chr8_1:53135525-53135544 | Msa1200500:CDS | 35.0% | |
GTTTATTGTTGTGTTGTGTG+AGG | - | chr8_1:53135579-53135598 | None:intergenic | 35.0% | |
! | GTTTTCAAAAGGACTATTGG+TGG | + | chr8_1:53135659-53135678 | Msa1200500:three_prime_UTR | 35.0% |
TAGAAGATGGAGAAAACAAG+TGG | + | chr8_1:53135846-53135865 | Msa1200500:three_prime_UTR | 35.0% | |
AAAACAAGTGGCTAAACCTT+TGG | + | chr8_1:53135858-53135877 | Msa1200500:three_prime_UTR | 35.0% | |
!!! | TATTTTAGTGTGTCTGTGTG+TGG | + | chr8_1:53135968-53135987 | Msa1200500:three_prime_UTR | 35.0% |
!! | CAATCCTTTTCTTTTGCTGT+TGG | + | chr8_1:53136105-53136124 | Msa1200500:three_prime_UTR | 35.0% |
TGTCCAAATACTTTGGATGT+CGG | + | chr8_1:53136133-53136152 | Msa1200500:three_prime_UTR | 35.0% | |
! | ATACCGACATCCAAAGTATT+TGG | - | chr8_1:53136139-53136158 | None:intergenic | 35.0% |
!!! | TCTTGGACAAGAGTGTTTTA+AGG | + | chr8_1:53136183-53136202 | Msa1200500:three_prime_UTR | 35.0% |
!!! | CTTGGACAAGAGTGTTTTAA+GGG | + | chr8_1:53136184-53136203 | Msa1200500:three_prime_UTR | 35.0% |
GAGGAAGAGATTTAAGTCTC+CGG | - | chr8_1:53132494-53132513 | None:intergenic | 40.0% | |
GTTAGTGACGCAGAGAAAAA+CGG | - | chr8_1:53132598-53132617 | None:intergenic | 40.0% | |
GTCACTAACGCTGTATTCTT+CGG | + | chr8_1:53132609-53132628 | Msa1200500:CDS | 40.0% | |
CTTCTAGGTTTCTTCGGTAT+CGG | + | chr8_1:53132762-53132781 | Msa1200500:CDS | 40.0% | |
TTTAGCGAGAATCTCTTCGT+CGG | - | chr8_1:53132817-53132836 | None:intergenic | 40.0% | |
AAAGAAGACTCTCGAAAACC+AGG | + | chr8_1:53132834-53132853 | Msa1200500:CDS | 40.0% | |
GATCTATGAAGTTGTTGCAC+CGG | + | chr8_1:53132935-53132954 | Msa1200500:CDS | 40.0% | |
TTTGCAATTTCCTCGTCTTC+CGG | - | chr8_1:53132972-53132991 | None:intergenic | 40.0% | |
! | GTCTGCTAGTCTAGATTCTA+AGG | - | chr8_1:53133027-53133046 | None:intergenic | 40.0% |
CTAGAAGGTTTACCATTGGA+AGG | + | chr8_1:53133104-53133123 | Msa1200500:CDS | 40.0% | |
TCGTAATCGAAACCTTCCAA+TGG | - | chr8_1:53133119-53133138 | None:intergenic | 40.0% | |
CTTGTTGCAAGTACCAATAG+AGG | + | chr8_1:53133263-53133282 | Msa1200500:CDS | 40.0% | |
!! | TCTTCTGTGTTGCTTAGAGA+TGG | + | chr8_1:53133317-53133336 | Msa1200500:CDS | 40.0% |
! | ACCTGTTGTTAGGTTTTCGT+CGG | + | chr8_1:53133352-53133371 | Msa1200500:CDS | 40.0% |
TAAAGAGGGACAATATGGAG+AGG | + | chr8_1:53134079-53134098 | Msa1200500:intron | 40.0% | |
AGAGGATCTACAATTAGTCG+TGG | + | chr8_1:53134097-53134116 | Msa1200500:intron | 40.0% | |
ATCCAATTTATGAAGGGACG+AGG | + | chr8_1:53134235-53134254 | Msa1200500:intron | 40.0% | |
TTCCAATGACATCCATGTCA+GGG | - | chr8_1:53134540-53134559 | None:intergenic | 40.0% | |
ATTCCAATGACATCCATGTC+AGG | - | chr8_1:53134541-53134560 | None:intergenic | 40.0% | |
ATGGATGTCATTGGAATCTC+AGG | + | chr8_1:53134544-53134563 | Msa1200500:CDS | 40.0% | |
!! | AGGAACGGTTCTAGGATTAA+TGG | - | chr8_1:53134607-53134626 | None:intergenic | 40.0% |
!! | GCACACTATTGGTTTGGTTA+TGG | + | chr8_1:53134666-53134685 | Msa1200500:intron | 40.0% |
!! | ACTATTGGTTTGGTTATGGC+AGG | + | chr8_1:53134670-53134689 | Msa1200500:intron | 40.0% |
TTTCTGTTCCGACAAGAAAG+CGG | + | chr8_1:53134696-53134715 | Msa1200500:CDS | 40.0% | |
CAGCTGTAAACTGGATTGAA+GGG | + | chr8_1:53134719-53134738 | Msa1200500:CDS | 40.0% | |
TGAGGCTGTTATTAAGGAAG+AGG | + | chr8_1:53134762-53134781 | Msa1200500:CDS | 40.0% | |
!! | GAAAGTGTTGAAGACTAGTG+TGG | + | chr8_1:53134792-53134811 | Msa1200500:CDS | 40.0% |
AAGGTCTTTGCCATCATTCA+CGG | - | chr8_1:53134989-53135008 | None:intergenic | 40.0% | |
ACAGAAATTAGTGGTCCCTT+TGG | + | chr8_1:53135041-53135060 | Msa1200500:intron | 40.0% | |
! | TTTGTCCTTATGAGAGGCAT+TGG | - | chr8_1:53135614-53135633 | None:intergenic | 40.0% |
!!! | GTCGTTTTTGTCCTTATGAG+AGG | - | chr8_1:53135620-53135639 | None:intergenic | 40.0% |
! | AACCAACTGTACGCTCTTTT+TGG | - | chr8_1:53135642-53135661 | None:intergenic | 40.0% |
!!! | GCGTACAGTTGGTTTTCAAA+AGG | + | chr8_1:53135648-53135667 | Msa1200500:three_prime_UTR | 40.0% |
TTCAAAAGGACTATTGGTGG+TGG | + | chr8_1:53135662-53135681 | Msa1200500:three_prime_UTR | 40.0% | |
ACAGAAAAGGTTGCATCTAG+TGG | + | chr8_1:53135759-53135778 | Msa1200500:three_prime_UTR | 40.0% | |
ATTCAACACCTTAGTCCATG+TGG | + | chr8_1:53135783-53135802 | Msa1200500:three_prime_UTR | 40.0% | |
TTCAACACCTTAGTCCATGT+GGG | + | chr8_1:53135784-53135803 | Msa1200500:three_prime_UTR | 40.0% | |
AGTGCCAACAGCAAAAGAAA+AGG | - | chr8_1:53136112-53136131 | None:intergenic | 40.0% | |
GGCACTTTGTCCAAATACTT+TGG | + | chr8_1:53136126-53136145 | Msa1200500:three_prime_UTR | 40.0% | |
TTTAAGGGATATTCCTGTGC+CGG | + | chr8_1:53136199-53136218 | Msa1200500:three_prime_UTR | 40.0% | |
TAGATAACTAAAACCGGCAC+AGG | - | chr8_1:53136215-53136234 | None:intergenic | 40.0% | |
TGGTTGGAAAATGAGAGGGA+GGG | - | chr8_1:53132341-53132360 | None:intergenic | 45.0% | |
TTGGTTGGAAAATGAGAGGG+AGG | - | chr8_1:53132342-53132361 | None:intergenic | 45.0% | |
GAAGCGAAAAACGAGGGAAA+GGG | - | chr8_1:53132385-53132404 | None:intergenic | 45.0% | |
AGAAGCGAAAAACGAGGGAA+AGG | - | chr8_1:53132386-53132405 | None:intergenic | 45.0% | |
!! | TTTCCCTCGTTTTTCGCTTC+TGG | + | chr8_1:53132385-53132404 | Msa1200500:five_prime_UTR | 45.0% |
!! | TTCCCTCGTTTTTCGCTTCT+GGG | + | chr8_1:53132386-53132405 | Msa1200500:five_prime_UTR | 45.0% |
AACCCAGAAGCGAAAAACGA+GGG | - | chr8_1:53132391-53132410 | None:intergenic | 45.0% | |
AAACCCAGAAGCGAAAAACG+AGG | - | chr8_1:53132392-53132411 | None:intergenic | 45.0% | |
GAAAAAAAATGGACGCTCGC+CGG | + | chr8_1:53132472-53132491 | Msa1200500:exon | 45.0% | |
! | TGGTAAGCTTCTGGGTTTTG+AGG | - | chr8_1:53132542-53132561 | None:intergenic | 45.0% |
! | CTGTGAAGTGAGGTTTTCTC+CGG | - | chr8_1:53132574-53132593 | None:intergenic | 45.0% |
GAAAAACGGTCTGTGAAGTG+AGG | - | chr8_1:53132584-53132603 | None:intergenic | 45.0% | |
CATGAAGAGGAGTTTCCGTA+CGG | - | chr8_1:53132686-53132705 | None:intergenic | 45.0% | |
! | TATAAGAGAAACGATGGCGG+CGG | - | chr8_1:53132727-53132746 | None:intergenic | 45.0% |
GGCTATAAGAGAAACGATGG+CGG | - | chr8_1:53132730-53132749 | None:intergenic | 45.0% | |
GGAGGCTATAAGAGAAACGA+TGG | - | chr8_1:53132733-53132752 | None:intergenic | 45.0% | |
GAAACCTAGAAGGTAAACGG+CGG | - | chr8_1:53132754-53132773 | None:intergenic | 45.0% | |
CGATACCGAAGAAACCTAGA+AGG | - | chr8_1:53132764-53132783 | None:intergenic | 45.0% | |
ACAATTGGAGTTACCGTTGC+CGG | - | chr8_1:53132903-53132922 | None:intergenic | 45.0% | |
GGTAACTCCAATTGTAGCTC+CGG | + | chr8_1:53132908-53132927 | Msa1200500:CDS | 45.0% | |
ATCTTCACCGGAGCTACAAT+TGG | - | chr8_1:53132918-53132937 | None:intergenic | 45.0% | |
GGAATACGACGGAATTGAAC+CGG | - | chr8_1:53133006-53133025 | None:intergenic | 45.0% | |
AGTGTTGTGAGATGCCGATA+GGG | + | chr8_1:53133153-53133172 | Msa1200500:CDS | 45.0% | |
! | GGGTTTGTTCAAATTCCGGT+TGG | + | chr8_1:53133173-53133192 | Msa1200500:CDS | 45.0% |
!! | TCAAATTCCGGTTGGTGTTG+CGG | + | chr8_1:53133181-53133200 | Msa1200500:CDS | 45.0% |
TCAACTCCATCCAACAACAG+TGG | - | chr8_1:53133209-53133228 | None:intergenic | 45.0% | |
AGTTGAGTACACTGTACCCA+TGG | + | chr8_1:53133223-53133242 | Msa1200500:CDS | 45.0% | |
! | TGACTAGAGCACCTGTTGTT+AGG | + | chr8_1:53133342-53133361 | Msa1200500:CDS | 45.0% |
TATGAAGCATGGACACTCCT+TGG | + | chr8_1:53133570-53133589 | Msa1200500:intron | 45.0% | |
! | TCCTTGGATTAGGCGTGTTA+TGG | + | chr8_1:53133586-53133605 | Msa1200500:intron | 45.0% |
ACCATAACACGCCTAATCCA+AGG | - | chr8_1:53133590-53133609 | None:intergenic | 45.0% | |
ATGAAGCACAGATACGGAGA+CGG | - | chr8_1:53133733-53133752 | None:intergenic | 45.0% | |
GTTAAATGGATCCCCTGCAA+GGG | + | chr8_1:53133819-53133838 | Msa1200500:intron | 45.0% | |
TGATCCCTTGCAACGTTACT+GGG | - | chr8_1:53133895-53133914 | None:intergenic | 45.0% | |
TTGATCCCTTGCAACGTTAC+TGG | - | chr8_1:53133896-53133915 | None:intergenic | 45.0% | |
GTTTGGATTGATCGCGAGTT+TGG | + | chr8_1:53133941-53133960 | Msa1200500:intron | 45.0% | |
CTTTATCCCCTCTCCATGTT+TGG | - | chr8_1:53134064-53134083 | None:intergenic | 45.0% | |
AACATGGAGAGGGGATAAAG+AGG | + | chr8_1:53134064-53134083 | Msa1200500:intron | 45.0% | |
ACATGGAGAGGGGATAAAGA+GGG | + | chr8_1:53134065-53134084 | Msa1200500:intron | 45.0% | |
GGGGATAAAGAGGGACAATA+TGG | + | chr8_1:53134074-53134093 | Msa1200500:intron | 45.0% | |
TCCATCTGCAACAACTCCAA+CGG | - | chr8_1:53134203-53134222 | None:intergenic | 45.0% | |
TTGCAGATGGAGAGGTCAAT+AGG | + | chr8_1:53134212-53134231 | Msa1200500:intron | 45.0% | |
GACCTCGTCCCTTCATAAAT+TGG | - | chr8_1:53134240-53134259 | None:intergenic | 45.0% | |
ATGAAGGGACGAGGTCATAT+AGG | + | chr8_1:53134244-53134263 | Msa1200500:intron | 45.0% | |
AGCATTCAGCCTACAATTGC+TGG | + | chr8_1:53134409-53134428 | Msa1200500:CDS | 45.0% | |
ATTCGATTCCGTTGCAGTAC+TGG | + | chr8_1:53134445-53134464 | Msa1200500:CDS | 45.0% | |
! | GGGATGAACATGGTGTCAAA+AGG | + | chr8_1:53134478-53134497 | Msa1200500:CDS | 45.0% |
TTCCCTGACATGGATGTCAT+TGG | + | chr8_1:53134535-53134554 | Msa1200500:CDS | 45.0% | |
CCATAACAAGGAACGGTTCT+AGG | - | chr8_1:53134615-53134634 | None:intergenic | 45.0% | |
CCTAGAACCGTTCCTTGTTA+TGG | + | chr8_1:53134612-53134631 | Msa1200500:intron | 45.0% | |
GCAGCTGTAAACTGGATTGA+AGG | + | chr8_1:53134718-53134737 | Msa1200500:CDS | 45.0% | |
GGTGTGTGAGGCTGTTATTA+AGG | + | chr8_1:53134756-53134775 | Msa1200500:CDS | 45.0% | |
GGCTGTTATTAAGGAAGAGG+TGG | + | chr8_1:53134765-53134784 | Msa1200500:CDS | 45.0% | |
! | AGTGTTGAAGACTAGTGTGG+AGG | + | chr8_1:53134795-53134814 | Msa1200500:CDS | 45.0% |
GAACTCTCAACATTCTGAGC+AGG | - | chr8_1:53134943-53134962 | None:intergenic | 45.0% | |
ATCATTCACGGGTTCCATCA+TGG | - | chr8_1:53134977-53134996 | None:intergenic | 45.0% | |
! | ATGATGGAACCCGTGAATGA+TGG | + | chr8_1:53134976-53134995 | Msa1200500:CDS | 45.0% |
AGGTCTTTGCCATCATTCAC+GGG | - | chr8_1:53134988-53135007 | None:intergenic | 45.0% | |
GCATGGTGACAGAAATGTGA+AGG | - | chr8_1:53135008-53135027 | None:intergenic | 45.0% | |
AGAAAACCATGCTCGGTAGT+TGG | - | chr8_1:53135179-53135198 | None:intergenic | 45.0% | |
AATCTCCAGGTGCAAATGCT+AGG | + | chr8_1:53135410-53135429 | Msa1200500:CDS | 45.0% | |
AATAGCCTAGCATTTGCACC+TGG | - | chr8_1:53135418-53135437 | None:intergenic | 45.0% | |
AGGTGCAAATGCTAGGCTAT+TGG | + | chr8_1:53135417-53135436 | Msa1200500:CDS | 45.0% | |
! | GCAAGCTCACGAAACGATTT+TGG | - | chr8_1:53135557-53135576 | None:intergenic | 45.0% |
! | GACCAAAAAGAGCGTACAGT+TGG | + | chr8_1:53135637-53135656 | Msa1200500:three_prime_UTR | 45.0% |
! | TTGAGCTCAACAAGAGCATG+TGG | + | chr8_1:53135723-53135742 | Msa1200500:three_prime_UTR | 45.0% |
AAAAGACAATGCCTCCCACA+TGG | - | chr8_1:53135801-53135820 | None:intergenic | 45.0% | |
GAGAGGGAGGGAGGAAAAAT+TGG | - | chr8_1:53132329-53132348 | None:intergenic | 50.0% | |
TTGGAAAATGAGAGGGAGGG+AGG | - | chr8_1:53132338-53132357 | None:intergenic | 50.0% | |
!!! | GGTTTTGAGGTTTTCACCGC+CGG | - | chr8_1:53132529-53132548 | None:intergenic | 50.0% |
! | TGAAGTGAGGTTTTCTCCGG+TGG | - | chr8_1:53132571-53132590 | None:intergenic | 50.0% |
GTGGAGGAGAAAATACGCGA+CGG | - | chr8_1:53132646-53132665 | None:intergenic | 50.0% | |
! | CGTATTTTCTCCTCCACCGT+TGG | + | chr8_1:53132649-53132668 | Msa1200500:CDS | 50.0% |
GAGACAGTGACGACATGAAG+AGG | - | chr8_1:53132699-53132718 | None:intergenic | 50.0% | |
TCTTCGTCGGAGAGATCATC+CGG | - | chr8_1:53132804-53132823 | None:intergenic | 50.0% | |
CACCGACGTAAAACCACAAC+CGG | + | chr8_1:53132881-53132900 | Msa1200500:CDS | 50.0% | |
!! | TGCCGGTTGTGGTTTTACGT+CGG | - | chr8_1:53132886-53132905 | None:intergenic | 50.0% |
CGTAAAACCACAACCGGCAA+CGG | + | chr8_1:53132887-53132906 | Msa1200500:CDS | 50.0% | |
TCTTCCGGTGTGAGATTCAC+CGG | - | chr8_1:53132957-53132976 | None:intergenic | 50.0% | |
ACTAGCAGACTGCCGTAAAG+CGG | + | chr8_1:53133037-53133056 | Msa1200500:CDS | 50.0% | |
TCAGCGGTGCAAACGATAAC+TGG | + | chr8_1:53133074-53133093 | Msa1200500:CDS | 50.0% | |
CAGTGTTGTGAGATGCCGAT+AGG | + | chr8_1:53133152-53133171 | Msa1200500:CDS | 50.0% | |
!! | CAAATTCCGGTTGGTGTTGC+GGG | + | chr8_1:53133182-53133201 | Msa1200500:CDS | 50.0% |
TACCCATGGCTACCACTGAA+GGG | + | chr8_1:53133237-53133256 | Msa1200500:CDS | 50.0% | |
TGCAACAAGACACCCTTCAG+TGG | - | chr8_1:53133252-53133271 | None:intergenic | 50.0% | |
GCCGACGAAAACCTAACAAC+AGG | - | chr8_1:53133356-53133375 | None:intergenic | 50.0% | |
GCATGGACACTCCTTGGATT+AGG | + | chr8_1:53133576-53133595 | Msa1200500:intron | 50.0% | |
ACAGATACGGAGACGGACAT+TGG | - | chr8_1:53133726-53133745 | None:intergenic | 50.0% | |
GGTTAAATGGATCCCCTGCA+AGG | + | chr8_1:53133818-53133837 | Msa1200500:intron | 50.0% | |
TCGCGAGTTTGGCAAAGTCA+CGG | + | chr8_1:53133952-53133971 | Msa1200500:intron | 50.0% | |
TGGAGTTGTTGCAGATGGAG+AGG | + | chr8_1:53134204-53134223 | Msa1200500:intron | 50.0% | |
TGGCATCACCAGTACTGCAA+CGG | - | chr8_1:53134456-53134475 | None:intergenic | 50.0% | |
!! | TTGCAGTACTGGTGATGCCA+TGG | + | chr8_1:53134456-53134475 | Msa1200500:CDS | 50.0% |
!! | TGCAGTACTGGTGATGCCAT+GGG | + | chr8_1:53134457-53134476 | Msa1200500:CDS | 50.0% |
TGATGCCATGGGGATGAACA+TGG | + | chr8_1:53134468-53134487 | Msa1200500:CDS | 50.0% | |
TGACACCATGTTCATCCCCA+TGG | - | chr8_1:53134476-53134495 | None:intergenic | 50.0% | |
TCAGAGTGACTTCCCTGACA+TGG | + | chr8_1:53134525-53134544 | Msa1200500:CDS | 50.0% | |
!! | TACAGCTGCCGCTTTCTTGT+CGG | - | chr8_1:53134707-53134726 | None:intergenic | 50.0% |
AGAAAGCGGCAGCTGTAAAC+TGG | + | chr8_1:53134710-53134729 | Msa1200500:CDS | 50.0% | |
GTAAACTGGATTGAAGGGCG+TGG | + | chr8_1:53134724-53134743 | Msa1200500:CDS | 50.0% | |
TGGTAAGTCTGTGGTGTGTG+AGG | + | chr8_1:53134744-53134763 | Msa1200500:CDS | 50.0% | |
TCTGCTGTCTACATAGCCAC+TGG | + | chr8_1:53134910-53134929 | Msa1200500:CDS | 50.0% | |
TGTCTACATAGCCACTGGTC+AGG | + | chr8_1:53134915-53134934 | Msa1200500:CDS | 50.0% | |
TGTCACCATGCCTTCCATTG+AGG | + | chr8_1:53135017-53135036 | Msa1200500:CDS | 50.0% | |
CTGTACCTCAATGGAAGGCA+TGG | - | chr8_1:53135025-53135044 | None:intergenic | 50.0% | |
CTACAACCAACTACCGAGCA+TGG | + | chr8_1:53135170-53135189 | Msa1200500:intron | 50.0% | |
!! | ATTCAGGTTGGTACTGTGGG+AGG | + | chr8_1:53135322-53135341 | Msa1200500:intron | 50.0% |
!! | TTCAGGTTGGTACTGTGGGA+GGG | + | chr8_1:53135323-53135342 | Msa1200500:intron | 50.0% |
CTATTGGCCACCATTGTAGC+CGG | + | chr8_1:53135433-53135452 | Msa1200500:CDS | 50.0% | |
TACTGAACCGGCTACAATGG+TGG | - | chr8_1:53135443-53135462 | None:intergenic | 50.0% | |
!! | GAGTACTGAACCGGCTACAA+TGG | - | chr8_1:53135446-53135465 | None:intergenic | 50.0% |
CTCATGTCTGCAATTGCAGC+TGG | + | chr8_1:53135481-53135500 | Msa1200500:CDS | 50.0% | |
AACACCTTAGTCCATGTGGG+AGG | + | chr8_1:53135787-53135806 | Msa1200500:three_prime_UTR | 50.0% | |
! | AATGCCTCCCACATGGACTA+AGG | - | chr8_1:53135794-53135813 | None:intergenic | 50.0% |
!! | TTTGAGGTTTTCACCGCCGG+CGG | - | chr8_1:53132526-53132545 | None:intergenic | 55.0% |
!! | GGTGGTGGTGGTAAGCTTCT+GGG | - | chr8_1:53132550-53132569 | None:intergenic | 55.0% |
!! | TGGTGGTGGTGGTAAGCTTC+TGG | - | chr8_1:53132551-53132570 | None:intergenic | 55.0% |
AAGCTTACCACCACCACCAC+CGG | + | chr8_1:53132552-53132571 | Msa1200500:CDS | 55.0% | |
! | AGTGAGGTTTTCTCCGGTGG+TGG | - | chr8_1:53132568-53132587 | None:intergenic | 55.0% |
TACGGATCTTCTCGCGCCAA+CGG | - | chr8_1:53132668-53132687 | None:intergenic | 55.0% | |
TTGGCGCGAGAAGATCCGTA+CGG | + | chr8_1:53132668-53132687 | Msa1200500:CDS | 55.0% | |
ACCTAGAAGGTAAACGGCGG+AGG | - | chr8_1:53132751-53132770 | None:intergenic | 55.0% | |
CGGATCACGAACTTCCTTCC+CGG | + | chr8_1:53132782-53132801 | Msa1200500:CDS | 55.0% | |
CTTCGTCGGAGAGATCATCC+GGG | - | chr8_1:53132803-53132822 | None:intergenic | 55.0% | |
! | TCGACAAGTGCTGCTGGACA+CGG | - | chr8_1:53132861-53132880 | None:intergenic | 55.0% |
! | TGCACCGGTGAATCTCACAC+CGG | + | chr8_1:53132950-53132969 | Msa1200500:CDS | 55.0% |
GAATCTCACACCGGAAGACG+AGG | + | chr8_1:53132959-53132978 | Msa1200500:CDS | 55.0% | |
! | GACGTATTGCCGCCGCTTTA+CGG | - | chr8_1:53133052-53133071 | None:intergenic | 55.0% |
TGTTGCGGGTCCACTGTTGT+TGG | + | chr8_1:53133196-53133215 | Msa1200500:CDS | 55.0% | |
GTACCCATGGCTACCACTGA+AGG | + | chr8_1:53133236-53133255 | Msa1200500:CDS | 55.0% | |
CACCCTTCAGTGGTAGCCAT+GGG | - | chr8_1:53133242-53133261 | None:intergenic | 55.0% | |
ACACCCTTCAGTGGTAGCCA+TGG | - | chr8_1:53133243-53133262 | None:intergenic | 55.0% | |
TTGCAACGTTACTGGGCCGT+TGG | - | chr8_1:53133888-53133907 | None:intergenic | 55.0% | |
AACGGCCCAGTAACGTTGCA+AGG | + | chr8_1:53133887-53133906 | Msa1200500:intron | 55.0% | |
ACGGCCCAGTAACGTTGCAA+GGG | + | chr8_1:53133888-53133907 | Msa1200500:intron | 55.0% | |
TCTCACCGCCAGTCCAAACA+TGG | + | chr8_1:53134048-53134067 | Msa1200500:intron | 55.0% | |
! | CCTCTCCATGTTTGGACTGG+CGG | - | chr8_1:53134056-53134075 | None:intergenic | 55.0% |
CGCCAGTCCAAACATGGAGA+GGG | + | chr8_1:53134054-53134073 | Msa1200500:intron | 55.0% | |
GCCAGTCCAAACATGGAGAG+GGG | + | chr8_1:53134055-53134074 | Msa1200500:intron | 55.0% | |
TCCCCTCTCCATGTTTGGAC+TGG | - | chr8_1:53134059-53134078 | None:intergenic | 55.0% | |
GCCGTTGGAGTTGTTGCAGA+TGG | + | chr8_1:53134199-53134218 | Msa1200500:intron | 55.0% | |
!! | GCAGTACTGGTGATGCCATG+GGG | + | chr8_1:53134458-53134477 | Msa1200500:CDS | 55.0% |
! | TGAAGGGCGTGGTAAGTCTG+TGG | + | chr8_1:53134735-53134754 | Msa1200500:CDS | 55.0% |
! | GAAGACTAGTGTGGAGGCAC+TGG | + | chr8_1:53134801-53134820 | Msa1200500:CDS | 55.0% |
CAGCAAGGGCTGATCCAGTT+AGG | - | chr8_1:53134849-53134868 | None:intergenic | 55.0% | |
CTAACTGGATCAGCCCTTGC+TGG | + | chr8_1:53134847-53134866 | Msa1200500:CDS | 55.0% | |
!! | TCAGGTTGGTACTGTGGGAG+GGG | + | chr8_1:53135324-53135343 | Msa1200500:intron | 55.0% |
TGCACCTGGAGATTCTGTGC+TGG | - | chr8_1:53135404-53135423 | None:intergenic | 55.0% | |
! | TGTAGCCGGTTCAGTACTCG+CGG | + | chr8_1:53135447-53135466 | Msa1200500:CDS | 55.0% |
GGGGACCAATGCCTCTCATA+AGG | + | chr8_1:53135606-53135625 | Msa1200500:three_prime_UTR | 55.0% | |
!! | AAGGACTATTGGTGGTGGCC+AGG | + | chr8_1:53135667-53135686 | Msa1200500:three_prime_UTR | 55.0% |
! | TTGAGGTTTTCACCGCCGGC+GGG | - | chr8_1:53132525-53132544 | None:intergenic | 60.0% |
!!! | GTTTTCTCCGGTGGTGGTGG+TGG | - | chr8_1:53132562-53132581 | None:intergenic | 60.0% |
!! | GAGGTTTTCTCCGGTGGTGG+TGG | - | chr8_1:53132565-53132584 | None:intergenic | 60.0% |
GCCTCCGCCGTTTACCTTCT+AGG | + | chr8_1:53132747-53132766 | Msa1200500:CDS | 60.0% | |
GTCGGAGAGATCATCCGGGA+AGG | - | chr8_1:53132799-53132818 | None:intergenic | 60.0% | |
!! | TCGGTGTCGACAAGTGCTGC+TGG | - | chr8_1:53132867-53132886 | None:intergenic | 60.0% |
! | GGAGTTACCGTTGCCGGTTG+TGG | - | chr8_1:53132897-53132916 | None:intergenic | 60.0% |
AGCAGACTGCCGTAAAGCGG+CGG | + | chr8_1:53133040-53133059 | Msa1200500:CDS | 60.0% | |
GGCGGCAATACGTCGTTCAG+CGG | + | chr8_1:53133058-53133077 | Msa1200500:CDS | 60.0% | |
AGTGGACCCGCAACACCAAC+CGG | - | chr8_1:53133191-53133210 | None:intergenic | 60.0% | |
GCGGGTCCACTGTTGTTGGA+TGG | + | chr8_1:53133200-53133219 | Msa1200500:CDS | 60.0% | |
GATCCCCTGCAAGGGTTGCA+GGG | + | chr8_1:53133827-53133846 | Msa1200500:intron | 60.0% | |
CCGCCAGTCCAAACATGGAG+AGG | + | chr8_1:53134053-53134072 | Msa1200500:intron | 60.0% | |
TCAGCCCTTGCTGGTGCTCT+TGG | + | chr8_1:53134856-53134875 | Msa1200500:CDS | 60.0% | |
!! | CCCACCAAGAGCACCAGCAA+GGG | - | chr8_1:53134863-53134882 | None:intergenic | 60.0% |
CCCTTGCTGGTGCTCTTGGT+GGG | + | chr8_1:53134860-53134879 | Msa1200500:CDS | 60.0% | |
!! | ACCCACCAAGAGCACCAGCA+AGG | - | chr8_1:53134864-53134883 | None:intergenic | 60.0% |
CTGAGCAGGATCCTGACCAG+TGG | - | chr8_1:53134929-53134948 | None:intergenic | 60.0% | |
!! | CAGGTTGGTACTGTGGGAGG+GGG | + | chr8_1:53135325-53135344 | Msa1200500:intron | 60.0% |
! | GTAGCCGGTTCAGTACTCGC+GGG | + | chr8_1:53135448-53135467 | Msa1200500:CDS | 60.0% |
!! | GACTATTGGTGGTGGCCAGG+TGG | + | chr8_1:53135670-53135689 | Msa1200500:three_prime_UTR | 60.0% |
CTTCCTCCACGTTCTCCCGC+CGG | + | chr8_1:53132507-53132526 | Msa1200500:CDS | 65.0% | |
TCTTCTCGCGCCAACGGTGG+AGG | - | chr8_1:53132662-53132681 | None:intergenic | 65.0% | |
GGATCTTCTCGCGCCAACGG+TGG | - | chr8_1:53132665-53132684 | None:intergenic | 65.0% | |
! | AGTGCTGCTGGACACGGTCC+TGG | - | chr8_1:53132855-53132874 | None:intergenic | 65.0% |
GGATCCCCTGCAAGGGTTGC+AGG | + | chr8_1:53133826-53133845 | Msa1200500:intron | 65.0% | |
ACGGCCCTGCAACCCTTGCA+GGG | - | chr8_1:53133834-53133853 | None:intergenic | 65.0% | |
AACGGCCCTGCAACCCTTGC+AGG | - | chr8_1:53133835-53133854 | None:intergenic | 65.0% | |
TGCAAGGGTTGCAGGGCCGT+TGG | + | chr8_1:53133834-53133853 | Msa1200500:intron | 65.0% | |
GCCCTTGCTGGTGCTCTTGG+TGG | + | chr8_1:53134859-53134878 | Msa1200500:CDS | 65.0% | |
GGCGCCAGCACAGAATCTCC+AGG | + | chr8_1:53135397-53135416 | Msa1200500:CDS | 65.0% | |
!! | CTCGCCCGCGAGTACTGAAC+CGG | - | chr8_1:53135455-53135474 | None:intergenic | 65.0% |
CGGCCCTGCAACCCTTGCAG+GGG | - | chr8_1:53133833-53133852 | None:intergenic | 70.0% | |
CCTCCACGTTCTCCCGCCGG+CGG | + | chr8_1:53132510-53132529 | Msa1200500:CDS | 75.0% | |
TCACCGCCGGCGGGAGAACG+TGG | - | chr8_1:53132516-53132535 | None:intergenic | 75.0% | |
! | CCGCCGGCGGGAGAACGTGG+AGG | - | chr8_1:53132513-53132532 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 53132248 | 53136256 | 53132248 | ID=Msa1200500;Name=Msa1200500 |
chr8_1 | mRNA | 53132248 | 53136256 | 53132248 | ID=Msa1200500-mRNA-1;Parent=Msa1200500;Name=Msa1200500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=232|1|1|1|1|1|4|686|580 |
chr8_1 | exon | 53132248 | 53133450 | 53132248 | ID=Msa1200500-mRNA-1:exon:16991;Parent=Msa1200500-mRNA-1 |
chr8_1 | exon | 53134384 | 53134565 | 53134384 | ID=Msa1200500-mRNA-1:exon:16992;Parent=Msa1200500-mRNA-1 |
chr8_1 | exon | 53134692 | 53135038 | 53134692 | ID=Msa1200500-mRNA-1:exon:16993;Parent=Msa1200500-mRNA-1 |
chr8_1 | exon | 53135328 | 53136256 | 53135328 | ID=Msa1200500-mRNA-1:exon:16994;Parent=Msa1200500-mRNA-1 |
chr8_1 | five_prime_UTR | 53132248 | 53132479 | 53132248 | ID=Msa1200500-mRNA-1:five_prime_utr;Parent=Msa1200500-mRNA-1 |
chr8_1 | CDS | 53132480 | 53133450 | 53132480 | ID=Msa1200500-mRNA-1:cds;Parent=Msa1200500-mRNA-1 |
chr8_1 | CDS | 53134384 | 53134565 | 53134384 | ID=Msa1200500-mRNA-1:cds;Parent=Msa1200500-mRNA-1 |
chr8_1 | CDS | 53134692 | 53135038 | 53134692 | ID=Msa1200500-mRNA-1:cds;Parent=Msa1200500-mRNA-1 |
chr8_1 | CDS | 53135328 | 53135570 | 53135328 | ID=Msa1200500-mRNA-1:cds;Parent=Msa1200500-mRNA-1 |
chr8_1 | three_prime_UTR | 53135571 | 53136256 | 53135571 | ID=Msa1200500-mRNA-1:three_prime_utr;Parent=Msa1200500-mRNA-1 |
Gene Sequence |
Protein sequence |