AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1293840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1293840 MtrunA17_Chr8g0370001 98.456 583 6 1 1 580 1 583 0.0 1169
Msa1293840 MtrunA17_Chr5g0407521 77.362 561 109 5 28 580 17 567 0.0 878
Msa1293840 MtrunA17_Chr5g0442831 75.000 580 110 6 1 580 1 545 0.0 865
Msa1293840 MtrunA17_Chr5g0409021 77.757 544 99 4 37 580 21 542 0.0 854
Msa1293840 MtrunA17_Chr5g0408991 77.757 544 99 4 37 580 21 542 0.0 854
Msa1293840 MtrunA17_Chr5g0408981 77.757 544 99 4 37 580 21 542 0.0 854
Msa1293840 MtrunA17_Chr5g0409001 77.574 544 100 4 37 580 21 542 0.0 854
Msa1293840 MtrunA17_Chr5g0409011 77.757 544 99 4 37 580 21 542 0.0 854
Msa1293840 MtrunA17_Chr5g0409031 77.737 539 102 2 42 580 30 550 0.0 853
Msa1293840 MtrunA17_Chr5g0440371 70.256 585 149 5 1 580 1 565 0.0 793
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1293840 AT1G76490.1 70.084 595 146 7 1 576 51 632 0.0 820
Msa1293840 AT2G17370.1 71.322 537 132 6 42 575 37 554 0.0 759

Find 198 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTCTATGAAAATTATTT+TGG 0.119826 8_3:+51380113 None:intergenic
GCCTCCGCCGTTTACCTTCT+AGG 0.154239 8_3:-51383469 Msa1293840:CDS
TGTAAAGCTATTCATGTTTC+TGG 0.186633 8_3:-51382929 Msa1293840:CDS
TGGTGGTGGTGGTAAGCTTC+TGG 0.194075 8_3:+51383668 None:intergenic
CAGCCCTTGCTGGTGCTCTT+GGG 0.194967 8_3:-51381415 Msa1293840:CDS
TTTCGATTACGATTCGATAT+TGG 0.207910 8_3:-51383089 Msa1293840:CDS
TCAGCCCTTGCTGGTGCTCT+TGG 0.215407 8_3:-51381416 Msa1293840:CDS
GCAAGCTCACGAGACGATTT+TGG 0.234160 8_3:+51380713 None:intergenic
ATACCGACATCCAAAGTATT+TGG 0.261590 8_3:+51380138 None:intergenic
CAAATTCCGGTTGGTGTTGC+AGG 0.267571 8_3:-51383034 Msa1293840:CDS
TTCGATTACGATTCGATATT+GGG 0.270716 8_3:-51383088 Msa1293840:CDS
TCAGCGGTGCAAACGATAAC+TGG 0.306795 8_3:-51383142 Msa1293840:CDS
TTTGCAATTTCTTCGTCTTC+CGG 0.316517 8_3:+51383247 None:intergenic
GTCTGCTAGTCTGGATTCTA+AGG 0.347797 8_3:+51383192 None:intergenic
TCTTAATTTACTTGGTGTTA+AGG 0.349199 8_3:-51380892 Msa1293840:CDS
AGCATTCAGCCTACAATTGC+TGG 0.351295 8_3:-51381864 Msa1293840:CDS
GATAGGGTTTGTTCAAATTC+CGG 0.351442 8_3:-51383047 Msa1293840:CDS
TGACTAGAGCACCTGTTGTT+AGG 0.353746 8_3:-51382874 Msa1293840:CDS
AATAGCTTTACACCCTCTAT+TGG 0.356892 8_3:+51382940 None:intergenic
CTTAATTTACTTGGTGTTAA+GGG 0.362558 8_3:-51380891 Msa1293840:CDS
GGTGGTGGTGGTAAGCTTCT+GGG 0.366246 8_3:+51383669 None:intergenic
GACGTATTGCCGCCGCTTTA+CGG 0.366700 8_3:+51383167 None:intergenic
AAATTCTTGCCAGCAATTGT+AGG 0.370194 8_3:+51381855 None:intergenic
TTTACGGCAGTCTGCTAGTC+TGG 0.385460 8_3:+51383183 None:intergenic
CTTCTAGGTTTCTTCGGTAT+CGG 0.393361 8_3:-51383454 Msa1293840:CDS
AGAAAGCGGCAGCTGTGAAC+TGG 0.395257 8_3:-51381562 Msa1293840:CDS
AGCCCTTGCTGGTGCTCTTG+GGG 0.401203 8_3:-51381414 Msa1293840:CDS
AACATGCTTAAGAACCTAAC+TGG 0.404216 8_3:-51381440 Msa1293840:CDS
ATTCGATTCCGTTGCAGTAC+TGG 0.409002 8_3:-51381828 Msa1293840:CDS
ACAATTGGAGTTACCGTTGC+CGG 0.414636 8_3:+51383316 None:intergenic
GGAGTTACCGTTGCCGGTGG+TGG 0.417634 8_3:+51383322 None:intergenic
CGGATCACGTACTTCCTTCC+CGG 0.427778 8_3:-51383434 Msa1293840:CDS
CTAACTGGATCAGCCCTTGC+TGG 0.430519 8_3:-51381425 Msa1293840:CDS
ATCTTCACCGGAGCTACAAT+TGG 0.432713 8_3:+51383301 None:intergenic
GCAGCTGTGAACTGGATTGA+AGG 0.437475 8_3:-51381554 Msa1293840:CDS
GCCCTTGCTGGTGCTCTTGG+GGG 0.438596 8_3:-51381413 Msa1293840:CDS
AAGGTCCTTGCCATCATTCA+CGG 0.439029 8_3:+51381286 None:intergenic
GCAGGTCCACTGTTGTTAGA+TGG 0.439060 8_3:-51383016 Msa1293840:CDS
GGCCACCATTGTAGCTGGTT+CGG 0.439947 8_3:-51380829 Msa1293840:CDS
ATAACTGGAAAATCTCTAGA+AGG 0.440221 8_3:-51383127 Msa1293840:CDS
GTCACTAACGCTGTATTCTT+CGG 0.440436 8_3:-51383607 Msa1293840:CDS
ATGGATGTCATTGGAATCTC+AGG 0.445773 8_3:-51381729 Msa1293840:intron
CTATTGGCCACCATTGTAGC+TGG 0.447817 8_3:-51380834 Msa1293840:CDS
TCAGCTTGTCTTAATTTACT+TGG 0.448427 8_3:-51380900 Msa1293840:CDS
GTTTACCTTCTAGGTTTCTT+CGG 0.453882 8_3:-51383460 Msa1293840:CDS
AAAACAAGTGGCTAAACCTT+TGG 0.455508 8_3:-51380410 Msa1293840:three_prime_UTR
CAGCAAGGGCTGATCCAGTT+AGG 0.457590 8_3:+51381426 None:intergenic
CCCTTGCTGGTGCTCTTGGG+GGG 0.461179 8_3:-51381412 Msa1293840:CDS
GGCACTTTGTCCAAATACTT+TGG 0.466447 8_3:-51380148 Msa1293840:three_prime_UTR
GCCGACGAAAACCTAACAAC+AGG 0.468777 8_3:+51382863 None:intergenic
CTCATGTCTGCAATTGCAGC+TGG 0.470089 8_3:-51380786 Msa1293840:CDS
TTAAGATAGATAACTAAAAC+CGG 0.473755 8_3:+51380056 None:intergenic
ATTCCAATGACATCCATGTC+AGG 0.476477 8_3:+51381735 None:intergenic
AAGGACTATTGGTGGTGGCC+AGG 0.478957 8_3:-51380600 Msa1293840:three_prime_UTR
AGTGCTGCTGGACACGGTCC+TGG 0.480294 8_3:+51383364 None:intergenic
AGTGGACCTGCAACACCAAC+CGG 0.480650 8_3:+51383028 None:intergenic
TTTGTCCTTATGAGAGGCAT+TGG 0.482183 8_3:+51380656 None:intergenic
GGGGACCAATGCCTCTCATA+AGG 0.484549 8_3:-51380661 Msa1293840:three_prime_UTR
TCTTCGTCGGAGAGATCGTC+CGG 0.485409 8_3:+51383415 None:intergenic
TCTTCTCGCGCCAACGGTGG+AGG 0.486592 8_3:+51383557 None:intergenic
AGAAGTGTTGAATTAGAAGA+TGG 0.487882 8_3:-51380435 Msa1293840:three_prime_UTR
TCAGGTTGGTACTGTGGGAG+GGG 0.488097 8_3:-51380943 Msa1293840:intron
CACTAATTTATGTACCTCAA+TGG 0.488262 8_3:+51381241 None:intergenic
ATAATTCAGGTTGGTACTGT+GGG 0.489921 8_3:-51380948 Msa1293840:intron
TTCCCTGACATGGATGTCAT+TGG 0.494706 8_3:-51381738 Msa1293840:CDS
TGCACCTGGAGATTCTGTGC+TGG 0.497072 8_3:+51380866 None:intergenic
AGGTGCAAATGCTAGGCTAT+TGG 0.497308 8_3:-51380850 Msa1293840:CDS
CGATACCGAAGAAACCTAGA+AGG 0.505448 8_3:+51383455 None:intergenic
GAAGAAACCTAGAAGGTAAA+CGG 0.508337 8_3:+51383462 None:intergenic
TTCTCACTGTATTACTATGA+TGG 0.509558 8_3:-51381312 Msa1293840:CDS
ATCTCTAGAAGGTTTACCGT+TGG 0.513091 8_3:-51383116 Msa1293840:CDS
TGTCACCATGCCTTCCATTG+AGG 0.519547 8_3:-51381255 Msa1293840:intron
CTAGAAGGTTTACCGTTGGA+AGG 0.521102 8_3:-51383112 Msa1293840:CDS
TCGGTGTCGACAAGTGCTGC+TGG 0.521714 8_3:+51383352 None:intergenic
AATGCCTCCCACATGGACTA+AGG 0.524949 8_3:+51380477 None:intergenic
TCTTCCGGTGTGAGATTCAC+CGG 0.525476 8_3:+51383262 None:intergenic
GGAATACGACGGAATTGAAC+CGG 0.526078 8_3:+51383213 None:intergenic
GAGTTGTTAATAATAGTCTC+TGG 0.526987 8_3:-51380227 Msa1293840:three_prime_UTR
TCGCCGCCGGCGGGAGAACG+TGG 0.527307 8_3:+51383703 None:intergenic
CACAACAATAAACTTGTAGA+GGG 0.527980 8_3:-51380681 Msa1293840:three_prime_UTR
CGTAAAACCACCACCGGCAA+CGG 0.528134 8_3:-51383329 Msa1293840:CDS
GAACTCTCAACATTCTGAGC+AGG 0.528481 8_3:+51381332 None:intergenic
GGTAACTCCAATTGTAGCTC+CGG 0.530278 8_3:-51383308 Msa1293840:CDS
TGCAGTACTGGTGATGCCAT+GGG 0.530758 8_3:-51381816 Msa1293840:CDS
AATCTCCAGGTGCAAATGCT+AGG 0.530949 8_3:-51380857 Msa1293840:CDS
ACCTAGAAGGTAAACGGCGG+AGG 0.531795 8_3:+51383468 None:intergenic
TACGGATCTTCTCGCGCCAA+CGG 0.532788 8_3:+51383551 None:intergenic
GAAGACTAGTGTGGAGGCAC+TGG 0.533947 8_3:-51381471 Msa1293840:CDS
TTTAAGGGATATTCCTGTGC+CGG 0.535342 8_3:-51380075 Msa1293840:three_prime_UTR
TTGGAAAATGAGAGGGAGGG+AGG 0.535656 8_3:+51383881 None:intergenic
TTCGTAGATTCAAATCTCGT+CGG 0.535668 8_3:-51383766 Msa1293840:five_prime_UTR
TTCAAAAGGACTATTGGTGG+TGG 0.540230 8_3:-51380605 Msa1293840:three_prime_UTR
GGCGCCAGCACAGAATCTCC+AGG 0.540230 8_3:-51380870 Msa1293840:CDS
GGTGTGTGAGGCTGTAATTA+AGG 0.541485 8_3:-51381516 Msa1293840:CDS
TGAAATACAACAGATCTAGC+AGG 0.545624 8_3:-51380743 Msa1293840:CDS
TCGACAAGTGCTGCTGGACA+CGG 0.546888 8_3:+51383358 None:intergenic
TTCAGGTTGGTACTGTGGGA+GGG 0.548296 8_3:-51380944 Msa1293840:intron
AGGTCCTTGCCATCATTCAC+GGG 0.549056 8_3:+51381287 None:intergenic
TGTCCAAATACTTTGGATGT+CGG 0.549454 8_3:-51380141 Msa1293840:three_prime_UTR
TGTCTACATAGCCACCGGTC+AGG 0.549674 8_3:-51381357 Msa1293840:CDS
TTGGTTGGAAAATGAGAGGG+AGG 0.550703 8_3:+51383877 None:intergenic
TTGCAGTACTGGTGATGCCA+TGG 0.550722 8_3:-51381817 Msa1293840:CDS
TCAGAGTGACTTCCCTGACA+TGG 0.551867 8_3:-51381748 Msa1293840:CDS
TAGATAACTAAAACCGGCAC+AGG 0.557175 8_3:+51380062 None:intergenic
GGATCTTCTCGCGCCAACGG+TGG 0.558078 8_3:+51383554 None:intergenic
CACCGACGTAAAACCACCAC+CGG 0.559984 8_3:-51383335 Msa1293840:CDS
AGTGTTGTGAAATGCCGATA+GGG 0.561600 8_3:-51383063 Msa1293840:CDS
CAGCTGTGAACTGGATTGAA+GGG 0.562393 8_3:-51381553 Msa1293840:CDS
ACAGAAAAGGTTGCATCTAG+TGG 0.563519 8_3:-51380509 Msa1293840:three_prime_UTR
ATTCAGGTTGGTACTGTGGG+AGG 0.563884 8_3:-51380945 Msa1293840:intron
CTTCCTCCACGTTCTCCCGC+CGG 0.565279 8_3:-51383709 Msa1293840:CDS
AATAATTCAGGTTGGTACTG+TGG 0.566379 8_3:-51380949 Msa1293840:intron
ACACCCTTCAGTGGTAGCCA+TGG 0.566660 8_3:+51382976 None:intergenic
AAAGCTATTCATGTTTCTGG+TGG 0.566843 8_3:-51382926 Msa1293840:CDS
ACACAACAATAAACTTGTAG+AGG 0.567966 8_3:-51380682 Msa1293840:three_prime_UTR
TGACACCATGTTCATCCCCA+TGG 0.567983 8_3:+51381800 None:intergenic
AAGCTTACCACCACCACCAC+CGG 0.569453 8_3:-51383664 Msa1293840:CDS
CAGGTTGGTACTGTGGGAGG+GGG 0.569796 8_3:-51380942 Msa1293840:CDS
ATGATGGAACCCGTGAATGA+TGG 0.569819 8_3:-51381296 Msa1293840:CDS
GAGACTGTGACGACATGAAG+AGG 0.576532 8_3:+51383520 None:intergenic
ACAACTTCATAGATCTTCAC+CGG 0.578120 8_3:+51383289 None:intergenic
GTGCCCATGGCTACCACTGA+AGG 0.579062 8_3:-51382980 Msa1293840:CDS
ATGTACCTCAATGGAAGGCA+TGG 0.580763 8_3:+51381250 None:intergenic
CAGTGTTGTGAAATGCCGAT+AGG 0.585519 8_3:-51383064 Msa1293840:CDS
ATTGCAAAATCAGTTGTCAC+CGG 0.587890 8_3:-51383232 Msa1293840:CDS
GGCTGTAATTAAGGAAGAGG+TGG 0.590912 8_3:-51381507 Msa1293840:CDS
AGCAGACTGCCGTAAAGCGG+CGG 0.591467 8_3:-51383176 Msa1293840:CDS
GTAGCTGGTTCGGTACTCGC+CGG 0.591964 8_3:-51380819 Msa1293840:CDS
TTGAGCTCAACAAGAGCATG+TGG 0.593447 8_3:-51380545 Msa1293840:three_prime_UTR
AAAGAAGACTCTCGAAAACC+AGG 0.593503 8_3:-51383382 Msa1293840:CDS
CACCCTTCAGTGGTAGCCAT+GGG 0.593635 8_3:+51382977 None:intergenic
AATTTATGTACCTCAATGGA+AGG 0.594939 8_3:+51381245 None:intergenic
TGTTAATAATAGTCTCTGGT+TGG 0.595109 8_3:-51380223 Msa1293840:three_prime_UTR
AAGAATCAAACTAATGCCAA+AGG 0.595697 8_3:+51380394 None:intergenic
GAAAGTGTTGAAGACTAGTG+TGG 0.595958 8_3:-51381480 Msa1293840:CDS
TGAGGCTGTAATTAAGGAAG+AGG 0.596038 8_3:-51381510 Msa1293840:CDS
CTTGTTGCAAGTACCAATAG+AGG 0.597773 8_3:-51382953 Msa1293840:CDS
GGGATGAACATGGTGTCAAA+AGG 0.598387 8_3:-51381795 Msa1293840:CDS
GGCGGCAATACGTCGTTCAG+CGG 0.601502 8_3:-51383158 Msa1293840:CDS
TTTAGCGAGAATCTCTTCGT+CGG 0.601897 8_3:+51383402 None:intergenic
GGGTTTGTTCAAATTCCGGT+TGG 0.602041 8_3:-51383043 Msa1293840:CDS
TTGATTGGTTGGAAAATGAG+AGG 0.605148 8_3:+51383873 None:intergenic
GGAATTTGAACAAACCCTAT+CGG 0.606204 8_3:+51383049 None:intergenic
GCAAGTGTATCAAAATTAAG+CGG 0.609171 8_3:+51382803 None:intergenic
GAGGAAGAGATTTAAGTCTC+CGG 0.609171 8_3:+51383725 None:intergenic
AGTCACTCTGAAGAAAATCA+AGG 0.609778 8_3:+51381760 None:intergenic
ATTCTGAGCAGGATCCTGAC+CGG 0.609838 8_3:+51381343 None:intergenic
ACTAGCAGACTGCCGTAAAG+CGG 0.612353 8_3:-51383179 Msa1293840:CDS
TCTGCTGTCTACATAGCCAC+CGG 0.613011 8_3:-51381362 Msa1293840:CDS
AATAGCCTAGCATTTGCACC+TGG 0.614511 8_3:+51380852 None:intergenic
GTCGGAGAGATCGTCCGGGA+AGG 0.614794 8_3:+51383420 None:intergenic
TGATGCCATGGGGATGAACA+TGG 0.618362 8_3:-51381805 Msa1293840:CDS
TTCCAATGACATCCATGTCA+GGG 0.618523 8_3:+51381736 None:intergenic
AAAAGACAATGCCTCCCACA+TGG 0.620407 8_3:+51380470 None:intergenic
ATTGGAGTTACCGTTGCCGG+TGG 0.621066 8_3:+51383319 None:intergenic
TGGTAAATCTGTGGTGTGTG+AGG 0.623698 8_3:-51381528 Msa1293840:CDS
TGCCCATGGCTACCACTGAA+GGG 0.628203 8_3:-51382979 Msa1293840:CDS
GCATGGTGACAGAAATGTGA+AGG 0.628287 8_3:+51381267 None:intergenic
TGATTGGTTGGAAAATGAGA+GGG 0.628469 8_3:+51383874 None:intergenic
ATTCAACACCTTAGTCCATG+TGG 0.628776 8_3:-51380485 Msa1293840:three_prime_UTR
GATCTATGAAGTTGTTGCAC+CGG 0.629263 8_3:-51383281 Msa1293840:CDS
GAGTACCGAACCAGCTACAA+TGG 0.630274 8_3:+51380824 None:intergenic
TTTCTGTTCTGACAAGAAAG+CGG 0.630765 8_3:-51381576 Msa1293840:CDS
GAAATACAACAGATCTAGCA+GGG 0.634441 8_3:-51380742 Msa1293840:CDS
TGGCATCACCAGTACTGCAA+CGG 0.640383 8_3:+51381820 None:intergenic
TAGAAGATGGAGAAAACAAG+TGG 0.643097 8_3:-51380422 Msa1293840:three_prime_UTR
GACTATTGGTGGTGGCCAGG+TGG 0.643231 8_3:-51380597 Msa1293840:three_prime_UTR
TGCAACAAGACACCCTTCAG+TGG 0.643810 8_3:+51382967 None:intergenic
TATAAGAGAAACGATGGCGG+CGG 0.644367 8_3:+51383492 None:intergenic
TTGTTGCAAGTACCAATAGA+GGG 0.651666 8_3:-51382952 Msa1293840:CDS
TTCAACACCTTAGTCCATGT+GGG 0.652759 8_3:-51380484 Msa1293840:three_prime_UTR
CTTCGTCGGAGAGATCGTCC+GGG 0.655523 8_3:+51383416 None:intergenic
CCGCCGGCGGGAGAACGTGG+AGG 0.661160 8_3:+51383706 None:intergenic
TGGTTGGAAAATGAGAGGGA+GGG 0.663143 8_3:+51383878 None:intergenic
GGAGGCTATAAGAGAAACGA+TGG 0.663583 8_3:+51383486 None:intergenic
TACCGAACCAGCTACAATGG+TGG 0.664745 8_3:+51380827 None:intergenic
AGTTGAGTACACTGTGCCCA+TGG 0.665357 8_3:-51382993 Msa1293840:CDS
CATGAAGAGGAGTTTCCGTA+CGG 0.667785 8_3:+51383533 None:intergenic
GTTTATTGTTGTGTTGTGTG+AGG 0.668370 8_3:+51380691 None:intergenic
GTGAACTGGATTGAAGGGCG+TGG 0.669584 8_3:-51381548 Msa1293840:CDS
AGACATGAGTGATAGCTCGC+CGG 0.669906 8_3:+51380800 None:intergenic
GGAACCCGTGAATGATGGCA+AGG 0.672840 8_3:-51381291 Msa1293840:CDS
GGCTATAAGAGAAACGATGG+CGG 0.673455 8_3:+51383489 None:intergenic
CCTCCACGTTCTCCCGCCGG+CGG 0.675005 8_3:-51383706 Msa1293840:CDS
TCAACTCCATCTAACAACAG+TGG 0.686069 8_3:+51383010 None:intergenic
CTGGATTCTAAGGAATACGA+CGG 0.686525 8_3:+51383202 None:intergenic
TTGGCGCGAGAAGATCCGTA+CGG 0.687150 8_3:-51383548 Msa1293840:CDS
ACAACAATAAACTTGTAGAG+GGG 0.687899 8_3:-51380680 Msa1293840:three_prime_UTR
CTGAGCAGGATCCTGACCGG+TGG 0.689157 8_3:+51381346 None:intergenic
TGAAGGGCGTGGTAAATCTG+TGG 0.690759 8_3:-51381537 Msa1293840:CDS
AACACCTTAGTCCATGTGGG+AGG 0.694617 8_3:-51380481 Msa1293840:three_prime_UTR
AGTGCCAACAGCAAAAGACA+AGG 0.696504 8_3:+51380165 None:intergenic
AGTGTTGAAGACTAGTGTGG+AGG 0.700194 8_3:-51381477 Msa1293840:CDS
TCGTAATCGAAACCTTCCAA+CGG 0.712317 8_3:+51383100 None:intergenic
GTGGAGGAGAAAATACGCGA+CGG 0.712614 8_3:+51383573 None:intergenic
GCAGTACTGGTGATGCCATG+GGG 0.721193 8_3:-51381815 Msa1293840:CDS
TGCACCGGTGAATCTCACAC+CGG 0.728332 8_3:-51383266 Msa1293840:CDS
GAAACCTAGAAGGTAAACGG+CGG 0.781690 8_3:+51383465 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAACAAAATTTAGACTT+TGG + chr8_3:51381738-51381757 None:intergenic 15.0%
!!! TCTAAATTTTGTTAAAATCA+CGG - chr8_3:51381741-51381760 Msa1293840:CDS 15.0%
!! TTCATTCATTAACAATTTAA+TGG - chr8_3:51382086-51382105 Msa1293840:intron 15.0%
!! TCATTCATTAACAATTTAAT+GGG - chr8_3:51382087-51382106 Msa1293840:intron 15.0%
!! TATGTTTATTTAATTCCAAA+GGG + chr8_3:51382795-51382814 None:intergenic 15.0%
!! TTATGTTTATTTAATTCCAA+AGG + chr8_3:51382796-51382815 None:intergenic 15.0%
!!! TAGATTTTGTTTAATAATTC+AGG - chr8_3:51383047-51383066 Msa1293840:CDS 15.0%
!!! ACTAAAATAACAAATTTTTG+AGG + chr8_3:51383697-51383716 None:intergenic 15.0%
!!! AATCTCTATGAAAATTATTT+TGG + chr8_3:51383898-51383917 None:intergenic 15.0%
!! GATTGAATTAAAAAAGTTGT+TGG + chr8_3:51380047-51380066 None:intergenic 20.0%
!!! TTTGAAAGTTTTTGTTTGAT+TGG + chr8_3:51380153-51380172 None:intergenic 20.0%
!! TCATAGATATGAAATGATTT+AGG - chr8_3:51381486-51381505 Msa1293840:CDS 20.0%
!! CATAGATATGAAATGATTTA+GGG - chr8_3:51381487-51381506 Msa1293840:CDS 20.0%
!!! ATTTTATCTTGTAGGAAATT+AGG - chr8_3:51381518-51381537 Msa1293840:CDS 20.0%
!!! TAGTTTTTAGATTAACCTAA+AGG - chr8_3:51381894-51381913 Msa1293840:intron 20.0%
!!! TTTCTGTTTTTAAGAATTAC+TGG - chr8_3:51382027-51382046 Msa1293840:intron 20.0%
!!! TTCTGTTTTTAAGAATTACT+GGG - chr8_3:51382028-51382047 Msa1293840:intron 20.0%
!! TTTAAAAAGAAAATCATGCT+CGG + chr8_3:51382926-51382945 None:intergenic 20.0%
!! CATATTTATAAGCAAGTTTA+GGG - chr8_3:51382964-51382983 Msa1293840:CDS 20.0%
!! ATATTTATAAGCAAGTTTAG+GGG - chr8_3:51382965-51382984 Msa1293840:CDS 20.0%
!!! TTTTGTTTAATAATTCAGGT+TGG - chr8_3:51383051-51383070 Msa1293840:CDS 20.0%
!! TAAGAACAAAAAAACAGAAA+AGG - chr8_3:51383486-51383505 Msa1293840:CDS 20.0%
!!! AAAAAAAAAGTGTATAGTGA+TGG + chr8_3:51383811-51383830 None:intergenic 20.0%
!!! ATAATTTTCATAGAGATTCT+TGG - chr8_3:51383900-51383919 Msa1293840:five_prime_UTR 20.0%
!! TTAAGATAGATAACTAAAAC+CGG + chr8_3:51383955-51383974 None:intergenic 20.0%
!!! AAAGTTTTTGTTTGATTGGT+TGG + chr8_3:51380149-51380168 None:intergenic 25.0%
! ATATCTATGAAGCACAAATA+CGG + chr8_3:51381476-51381495 None:intergenic 25.0%
!! ACTTTTGGATTTTATCTTGT+AGG - chr8_3:51381510-51381529 Msa1293840:CDS 25.0%
!!! CATTTTAAAATGTGAACCAA+CGG + chr8_3:51381590-51381609 None:intergenic 25.0%
! TAACCTAAAGGTTTATAGAA+TGG - chr8_3:51381906-51381925 Msa1293840:intron 25.0%
! AAACCATTCTATAAACCTTT+AGG + chr8_3:51381912-51381931 None:intergenic 25.0%
!!! TCTGTTTTTAAGAATTACTG+GGG - chr8_3:51382029-51382048 Msa1293840:intron 25.0%
!! TTTTCTACTACATGTATGTT+TGG + chr8_3:51382871-51382890 None:intergenic 25.0%
! GCATATTTATAAGCAAGTTT+AGG - chr8_3:51382963-51382982 Msa1293840:CDS 25.0%
! TATTAAACAAAATCTAGCTG+AGG + chr8_3:51383043-51383062 None:intergenic 25.0%
!!! TCTTAATTTACTTGGTGTTA+AGG - chr8_3:51383116-51383135 Msa1293840:CDS 25.0%
!!! CTTAATTTACTTGGTGTTAA+GGG - chr8_3:51383117-51383136 Msa1293840:CDS 25.0%
CAAAAAACGAAGGAGAAAAA+TGG + chr8_3:51380212-51380231 None:intergenic 30.0%
AATGCAGAAACAAAAAACGA+AGG + chr8_3:51380222-51380241 None:intergenic 30.0%
AAATCTCGTCGGAAAAAAAA+TGG - chr8_3:51380253-51380272 Msa1293840:three_prime_UTR 30.0%
ATAACTGGAAAATCTCTAGA+AGG - chr8_3:51380881-51380900 Msa1293840:CDS 30.0%
TTTCGATTACGATTCGATAT+TGG - chr8_3:51380919-51380938 Msa1293840:CDS 30.0%
TTCGATTACGATTCGATATT+GGG - chr8_3:51380920-51380939 Msa1293840:CDS 30.0%
TGTAAAGCTATTCATGTTTC+TGG - chr8_3:51381079-51381098 Msa1293840:intron 30.0%
GCAAGTGTATCAAAATTAAG+CGG + chr8_3:51381208-51381227 None:intergenic 30.0%
TTGCGTTATGAGTTATTAGT+AGG - chr8_3:51381300-51381319 Msa1293840:CDS 30.0%
TCTCAAATTATTAGCAGTGT+CGG - chr8_3:51381421-51381440 Msa1293840:CDS 30.0%
! TGAAATGATTTAGGGACTTT+TGG - chr8_3:51381495-51381514 Msa1293840:CDS 30.0%
AATGTTTGTCTTTGATCCAA+TGG - chr8_3:51381606-51381625 Msa1293840:intron 30.0%
AAGAAGAGCGAAAATATGTT+TGG - chr8_3:51381661-51381680 Msa1293840:intron 30.0%
AAAACAACTGTTTGTCAAAG+AGG + chr8_3:51381860-51381879 None:intergenic 30.0%
!!! TATAGAATGGTTTTAGCTGT+TGG - chr8_3:51381919-51381938 Msa1293840:intron 30.0%
AATAGGATCCAATTTATGGA+GGG - chr8_3:51381964-51381983 Msa1293840:intron 30.0%
!! ACAATTTAATGGGTTTGTTC+AGG - chr8_3:51382097-51382116 Msa1293840:intron 30.0%
TTCTCACTGTATTACTATGA+TGG - chr8_3:51382696-51382715 Msa1293840:intron 30.0%
AATTTATGTACCTCAATGGA+AGG + chr8_3:51382766-51382785 None:intergenic 30.0%
CACTAATTTATGTACCTCAA+TGG + chr8_3:51382770-51382789 None:intergenic 30.0%
CATTGAGGTACATAAATTAG+TGG - chr8_3:51382768-51382787 Msa1293840:intron 30.0%
CATGTATGTTTGGCTAAAAA+TGG + chr8_3:51382861-51382880 None:intergenic 30.0%
TTTAGGGGAGCTAAATTAAA+AGG - chr8_3:51382980-51382999 Msa1293840:CDS 30.0%
TTAGGGGAGCTAAATTAAAA+GGG - chr8_3:51382981-51383000 Msa1293840:CDS 30.0%
TAGCTGAGGATACAATAAAA+TGG + chr8_3:51383029-51383048 None:intergenic 30.0%
TCAGCTTGTCTTAATTTACT+TGG - chr8_3:51383108-51383127 Msa1293840:CDS 30.0%
ACACAACAATAAACTTGTAG+AGG - chr8_3:51383326-51383345 Msa1293840:CDS 30.0%
CACAACAATAAACTTGTAGA+GGG - chr8_3:51383327-51383346 Msa1293840:CDS 30.0%
ACAACAATAAACTTGTAGAG+GGG - chr8_3:51383328-51383347 Msa1293840:CDS 30.0%
!! TTGGTTTTCAAAAGGACTAT+TGG - chr8_3:51383397-51383416 Msa1293840:CDS 30.0%
!!! TCATTTTTTTATTCACCACC+TGG + chr8_3:51383429-51383448 None:intergenic 30.0%
!! AGAAGTGTTGAATTAGAAGA+TGG - chr8_3:51383573-51383592 Msa1293840:CDS 30.0%
AAGAATCAAACTAATGCCAA+AGG + chr8_3:51383617-51383636 None:intergenic 30.0%
GAGTTGTTAATAATAGTCTC+TGG - chr8_3:51383781-51383800 Msa1293840:five_prime_UTR 30.0%
TGTTAATAATAGTCTCTGGT+TGG - chr8_3:51383785-51383804 Msa1293840:five_prime_UTR 30.0%
! TGATTGGTTGGAAAATGAGA+GGG + chr8_3:51380137-51380156 None:intergenic 35.0%
! TTGATTGGTTGGAAAATGAG+AGG + chr8_3:51380138-51380157 None:intergenic 35.0%
TTCGTAGATTCAAATCTCGT+CGG - chr8_3:51380242-51380261 Msa1293840:three_prime_UTR 35.0%
GAAGAAACCTAGAAGGTAAA+CGG + chr8_3:51380549-51380568 None:intergenic 35.0%
GTTTACCTTCTAGGTTTCTT+CGG - chr8_3:51380548-51380567 Msa1293840:three_prime_UTR 35.0%
ACAACTTCATAGATCTTCAC+CGG + chr8_3:51380722-51380741 None:intergenic 35.0%
TTTGCAATTTCTTCGTCTTC+CGG + chr8_3:51380764-51380783 None:intergenic 35.0%
ATTGCAAAATCAGTTGTCAC+CGG - chr8_3:51380776-51380795 Msa1293840:CDS 35.0%
GGAATTTGAACAAACCCTAT+CGG + chr8_3:51380962-51380981 None:intergenic 35.0%
! GATAGGGTTTGTTCAAATTC+CGG - chr8_3:51380961-51380980 Msa1293840:intron 35.0%
TTGTTGCAAGTACCAATAGA+GGG - chr8_3:51381056-51381075 Msa1293840:intron 35.0%
! AATAGCTTTACACCCTCTAT+TGG + chr8_3:51381071-51381090 None:intergenic 35.0%
!! AAAGCTATTCATGTTTCTGG+TGG - chr8_3:51381082-51381101 Msa1293840:intron 35.0%
! TCTTCTGTTTTGCTTAGAGA+TGG - chr8_3:51381109-51381128 Msa1293840:intron 35.0%
!! TGCTGAGTTGAAGTTTTTCT+TGG - chr8_3:51381177-51381196 Msa1293840:intron 35.0%
! TCTTGTAGGAAATTAGGTTG+AGG - chr8_3:51381524-51381543 Msa1293840:CDS 35.0%
!! CTTGTAGGAAATTAGGTTGA+GGG - chr8_3:51381525-51381544 Msa1293840:CDS 35.0%
!! TGAGGGATTTGTTGATTGAA+TGG - chr8_3:51381542-51381561 Msa1293840:CDS 35.0%
TGATCCCTTGCAACATTATT+GGG + chr8_3:51381632-51381651 None:intergenic 35.0%
TTGATCCCTTGCAACATTAT+TGG + chr8_3:51381633-51381652 None:intergenic 35.0%
! TTTGGAGCTTCACAAAATCA+TGG + chr8_3:51381720-51381739 None:intergenic 35.0%
GGTCAATAGGATCCAATTTA+TGG - chr8_3:51381960-51381979 Msa1293840:intron 35.0%
CAATAGGATCCAATTTATGG+AGG - chr8_3:51381963-51381982 Msa1293840:intron 35.0%
CTGGGGTTGTTCAATTAAAA+CGG - chr8_3:51382046-51382065 Msa1293840:intron 35.0%
TGGGGTTGTTCAATTAAAAC+GGG - chr8_3:51382047-51382066 Msa1293840:intron 35.0%
AAATTCTTGCCAGCAATTGT+AGG + chr8_3:51382156-51382175 None:intergenic 35.0%
! AGTCACTCTGAAGAAAATCA+AGG + chr8_3:51382251-51382270 None:intergenic 35.0%
!!! AGGAACGGTTTTAGGATTAA+AGG + chr8_3:51382342-51382361 None:intergenic 35.0%
TTTCAATTCCAACCACAACA+AGG + chr8_3:51382362-51382381 None:intergenic 35.0%
AATGTATTCATGCACACTGT+TGG - chr8_3:51382391-51382410 Msa1293840:intron 35.0%
TTTCTGTTCTGACAAGAAAG+CGG - chr8_3:51382432-51382451 Msa1293840:intron 35.0%
AACATGCTTAAGAACCTAAC+TGG - chr8_3:51382568-51382587 Msa1293840:intron 35.0%
ACATAAATTAGTGGTCCCTT+TGG - chr8_3:51382777-51382796 Msa1293840:intron 35.0%
!! AATAATTCAGGTTGGTACTG+TGG - chr8_3:51383059-51383078 Msa1293840:CDS 35.0%
!! ATAATTCAGGTTGGTACTGT+GGG - chr8_3:51383060-51383079 Msa1293840:CDS 35.0%
TGAAATACAACAGATCTAGC+AGG - chr8_3:51383265-51383284 Msa1293840:CDS 35.0%
GAAATACAACAGATCTAGCA+GGG - chr8_3:51383266-51383285 Msa1293840:CDS 35.0%
GTTTATTGTTGTGTTGTGTG+AGG + chr8_3:51383320-51383339 None:intergenic 35.0%
! AACCAACTGTATGCTCTTTT+TGG + chr8_3:51383383-51383402 None:intergenic 35.0%
!!! GCATACAGTTGGTTTTCAAA+AGG - chr8_3:51383389-51383408 Msa1293840:CDS 35.0%
! GTTTTCAAAAGGACTATTGG+TGG - chr8_3:51383400-51383419 Msa1293840:CDS 35.0%
TAGAAGATGGAGAAAACAAG+TGG - chr8_3:51383586-51383605 Msa1293840:CDS 35.0%
AAAACAAGTGGCTAAACCTT+TGG - chr8_3:51383598-51383617 Msa1293840:CDS 35.0%
!!! GTTATTTTAGTGTGTCTGTG+TGG - chr8_3:51383706-51383725 Msa1293840:CDS 35.0%
TGTCCAAATACTTTGGATGT+CGG - chr8_3:51383867-51383886 Msa1293840:five_prime_UTR 35.0%
! ATACCGACATCCAAAGTATT+TGG + chr8_3:51383873-51383892 None:intergenic 35.0%
!!! TCTTGGACAAGAGTGTTTTA+AGG - chr8_3:51383917-51383936 Msa1293840:five_prime_UTR 35.0%
!!! CTTGGACAAGAGTGTTTTAA+GGG - chr8_3:51383918-51383937 Msa1293840:five_prime_UTR 35.0%
GAGGAAGAGATTTAAGTCTC+CGG + chr8_3:51380286-51380305 None:intergenic 40.0%
GTTAGTGACGCAGAGAAAAA+CGG + chr8_3:51380390-51380409 None:intergenic 40.0%
GTCACTAACGCTGTATTCTT+CGG - chr8_3:51380401-51380420 Msa1293840:three_prime_UTR 40.0%
CTTCTAGGTTTCTTCGGTAT+CGG - chr8_3:51380554-51380573 Msa1293840:three_prime_UTR 40.0%
TTTAGCGAGAATCTCTTCGT+CGG + chr8_3:51380609-51380628 None:intergenic 40.0%
AAAGAAGACTCTCGAAAACC+AGG - chr8_3:51380626-51380645 Msa1293840:three_prime_UTR 40.0%
GATCTATGAAGTTGTTGCAC+CGG - chr8_3:51380727-51380746 Msa1293840:CDS 40.0%
! CTGGATTCTAAGGAATACGA+CGG + chr8_3:51380809-51380828 None:intergenic 40.0%
! ATCTCTAGAAGGTTTACCGT+TGG - chr8_3:51380892-51380911 Msa1293840:CDS 40.0%
TCGTAATCGAAACCTTCCAA+CGG + chr8_3:51380911-51380930 None:intergenic 40.0%
AGTGTTGTGAAATGCCGATA+GGG - chr8_3:51380945-51380964 Msa1293840:intron 40.0%
TCAACTCCATCTAACAACAG+TGG + chr8_3:51381001-51381020 None:intergenic 40.0%
CTTGTTGCAAGTACCAATAG+AGG - chr8_3:51381055-51381074 Msa1293840:intron 40.0%
! ACCTGTTGTTAGGTTTTCGT+CGG - chr8_3:51381144-51381163 Msa1293840:intron 40.0%
ATTGAATGGATCCCTTGCAA+GGG - chr8_3:51381556-51381575 Msa1293840:CDS 40.0%
TTGCAACATTATTGGGCCAT+TGG + chr8_3:51381625-51381644 None:intergenic 40.0%
AATGGCCCAATAATGTTGCA+AGG - chr8_3:51381624-51381643 Msa1293840:intron 40.0%
ATGGCCCAATAATGTTGCAA+GGG - chr8_3:51381625-51381644 Msa1293840:intron 40.0%
TTTAGCTGTTGGAGTTGTTG+CGG - chr8_3:51381930-51381949 Msa1293840:intron 40.0%
TTCCAATGACATCCATGTCA+GGG + chr8_3:51382275-51382294 None:intergenic 40.0%
ATTCCAATGACATCCATGTC+AGG + chr8_3:51382276-51382295 None:intergenic 40.0%
ATGGATGTCATTGGAATCTC+AGG - chr8_3:51382279-51382298 Msa1293840:intron 40.0%
ATTCCAACCACAACAAGGAA+CGG + chr8_3:51382357-51382376 None:intergenic 40.0%
TGAGGCTGTAATTAAGGAAG+AGG - chr8_3:51382498-51382517 Msa1293840:intron 40.0%
!! GAAAGTGTTGAAGACTAGTG+TGG - chr8_3:51382528-51382547 Msa1293840:intron 40.0%
AGAAAATCATGCTCGGTAAG+TGG + chr8_3:51382919-51382938 None:intergenic 40.0%
! TTTGTCCTTATGAGAGGCAT+TGG + chr8_3:51383355-51383374 None:intergenic 40.0%
!!! GTCGTTTTTGTCCTTATGAG+AGG + chr8_3:51383361-51383380 None:intergenic 40.0%
! GACCAAAAAGAGCATACAGT+TGG - chr8_3:51383378-51383397 Msa1293840:CDS 40.0%
TTCAAAAGGACTATTGGTGG+TGG - chr8_3:51383403-51383422 Msa1293840:CDS 40.0%
ACAGAAAAGGTTGCATCTAG+TGG - chr8_3:51383499-51383518 Msa1293840:CDS 40.0%
ATTCAACACCTTAGTCCATG+TGG - chr8_3:51383523-51383542 Msa1293840:CDS 40.0%
TTCAACACCTTAGTCCATGT+GGG - chr8_3:51383524-51383543 Msa1293840:CDS 40.0%
!! CAATCCTTGTCTTTTGCTGT+TGG - chr8_3:51383839-51383858 Msa1293840:five_prime_UTR 40.0%
GGCACTTTGTCCAAATACTT+TGG - chr8_3:51383860-51383879 Msa1293840:five_prime_UTR 40.0%
TTTAAGGGATATTCCTGTGC+CGG - chr8_3:51383933-51383952 Msa1293840:five_prime_UTR 40.0%
TAGATAACTAAAACCGGCAC+AGG + chr8_3:51383949-51383968 None:intergenic 40.0%
TGGTTGGAAAATGAGAGGGA+GGG + chr8_3:51380133-51380152 None:intergenic 45.0%
TTGGTTGGAAAATGAGAGGG+AGG + chr8_3:51380134-51380153 None:intergenic 45.0%
GAAGCGAAAAACGAGGGAAA+GGG + chr8_3:51380177-51380196 None:intergenic 45.0%
AGAAGCGAAAAACGAGGGAA+AGG + chr8_3:51380178-51380197 None:intergenic 45.0%
!! TTTCCCTCGTTTTTCGCTTC+TGG - chr8_3:51380177-51380196 Msa1293840:three_prime_UTR 45.0%
!! TTCCCTCGTTTTTCGCTTCT+GGG - chr8_3:51380178-51380197 Msa1293840:three_prime_UTR 45.0%
AACCCAGAAGCGAAAAACGA+GGG + chr8_3:51380183-51380202 None:intergenic 45.0%
AAACCCAGAAGCGAAAAACG+AGG + chr8_3:51380184-51380203 None:intergenic 45.0%
GAAAAAAAATGGACGCTCGC+CGG - chr8_3:51380264-51380283 Msa1293840:three_prime_UTR 45.0%
! TGGTAAGCTTCTGGGTTTTG+AGG + chr8_3:51380334-51380353 None:intergenic 45.0%
! CTGTGAAGTGAGGTTTTCTC+CGG + chr8_3:51380366-51380385 None:intergenic 45.0%
GAAAAACGGTCTGTGAAGTG+AGG + chr8_3:51380376-51380395 None:intergenic 45.0%
CATGAAGAGGAGTTTCCGTA+CGG + chr8_3:51380478-51380497 None:intergenic 45.0%
! TATAAGAGAAACGATGGCGG+CGG + chr8_3:51380519-51380538 None:intergenic 45.0%
GGCTATAAGAGAAACGATGG+CGG + chr8_3:51380522-51380541 None:intergenic 45.0%
GGAGGCTATAAGAGAAACGA+TGG + chr8_3:51380525-51380544 None:intergenic 45.0%
GAAACCTAGAAGGTAAACGG+CGG + chr8_3:51380546-51380565 None:intergenic 45.0%
CGATACCGAAGAAACCTAGA+AGG + chr8_3:51380556-51380575 None:intergenic 45.0%
ACAATTGGAGTTACCGTTGC+CGG + chr8_3:51380695-51380714 None:intergenic 45.0%
GGTAACTCCAATTGTAGCTC+CGG - chr8_3:51380700-51380719 Msa1293840:exon 45.0%
ATCTTCACCGGAGCTACAAT+TGG + chr8_3:51380710-51380729 None:intergenic 45.0%
GGAATACGACGGAATTGAAC+CGG + chr8_3:51380798-51380817 None:intergenic 45.0%
! GTCTGCTAGTCTGGATTCTA+AGG + chr8_3:51380819-51380838 None:intergenic 45.0%
CTAGAAGGTTTACCGTTGGA+AGG - chr8_3:51380896-51380915 Msa1293840:CDS 45.0%
CAGTGTTGTGAAATGCCGAT+AGG - chr8_3:51380944-51380963 Msa1293840:intron 45.0%
! GGGTTTGTTCAAATTCCGGT+TGG - chr8_3:51380965-51380984 Msa1293840:intron 45.0%
! TGACTAGAGCACCTGTTGTT+AGG - chr8_3:51381134-51381153 Msa1293840:intron 45.0%
TGAAGCACAAATACGGACAC+TGG + chr8_3:51381469-51381488 None:intergenic 45.0%
GATTGAATGGATCCCTTGCA+AGG - chr8_3:51381555-51381574 Msa1293840:CDS 45.0%
GTTTGGATTGATCGCGAGTT+TGG - chr8_3:51381678-51381697 Msa1293840:intron 45.0%
TACAGAGGGACAATATGGAG+AGG - chr8_3:51381814-51381833 Msa1293840:CDS 45.0%
ATCCAATTTATGGAGGGACG+AGG - chr8_3:51381970-51381989 Msa1293840:intron 45.0%
AGCATTCAGCCTACAATTGC+TGG - chr8_3:51382144-51382163 Msa1293840:intron 45.0%
ATTCGATTCCGTTGCAGTAC+TGG - chr8_3:51382180-51382199 Msa1293840:intron 45.0%
! GGGATGAACATGGTGTCAAA+AGG - chr8_3:51382213-51382232 Msa1293840:intron 45.0%
TTCCCTGACATGGATGTCAT+TGG - chr8_3:51382270-51382289 Msa1293840:intron 45.0%
! CCACAACAAGGAACGGTTTT+AGG + chr8_3:51382350-51382369 None:intergenic 45.0%
CCTAAAACCGTTCCTTGTTG+TGG - chr8_3:51382347-51382366 Msa1293840:intron 45.0%
! AAACCGTTCCTTGTTGTGGT+TGG - chr8_3:51382351-51382370 Msa1293840:intron 45.0%
!! GCACACTGTTGGTTTGATTG+TGG - chr8_3:51382402-51382421 Msa1293840:intron 45.0%
!! ACTGTTGGTTTGATTGTGGC+AGG - chr8_3:51382406-51382425 Msa1293840:intron 45.0%
CAGCTGTGAACTGGATTGAA+GGG - chr8_3:51382455-51382474 Msa1293840:intron 45.0%
TGGTAAATCTGTGGTGTGTG+AGG - chr8_3:51382480-51382499 Msa1293840:intron 45.0%
GGTGTGTGAGGCTGTAATTA+AGG - chr8_3:51382492-51382511 Msa1293840:intron 45.0%
GGCTGTAATTAAGGAAGAGG+TGG - chr8_3:51382501-51382520 Msa1293840:intron 45.0%
! AGTGTTGAAGACTAGTGTGG+AGG - chr8_3:51382531-51382550 Msa1293840:intron 45.0%
GAACTCTCAACATTCTGAGC+AGG + chr8_3:51382679-51382698 None:intergenic 45.0%
! ATGATGGAACCCGTGAATGA+TGG - chr8_3:51382712-51382731 Msa1293840:intron 45.0%
AAGGTCCTTGCCATCATTCA+CGG + chr8_3:51382725-51382744 None:intergenic 45.0%
GCATGGTGACAGAAATGTGA+AGG + chr8_3:51382744-51382763 None:intergenic 45.0%
ATGTACCTCAATGGAAGGCA+TGG + chr8_3:51382761-51382780 None:intergenic 45.0%
AATCTCCAGGTGCAAATGCT+AGG - chr8_3:51383151-51383170 Msa1293840:CDS 45.0%
AATAGCCTAGCATTTGCACC+TGG + chr8_3:51383159-51383178 None:intergenic 45.0%
AGGTGCAAATGCTAGGCTAT+TGG - chr8_3:51383158-51383177 Msa1293840:CDS 45.0%
! TTGAGCTCAACAAGAGCATG+TGG - chr8_3:51383463-51383482 Msa1293840:CDS 45.0%
AAAAGACAATGCCTCCCACA+TGG + chr8_3:51383541-51383560 None:intergenic 45.0%
AGTGCCAACAGCAAAAGACA+AGG + chr8_3:51383846-51383865 None:intergenic 45.0%
GAGAGGGAGGGAGGAAAAAT+TGG + chr8_3:51380121-51380140 None:intergenic 50.0%
TTGGAAAATGAGAGGGAGGG+AGG + chr8_3:51380130-51380149 None:intergenic 50.0%
! TGAAGTGAGGTTTTCTCCGG+TGG + chr8_3:51380363-51380382 None:intergenic 50.0%
GTGGAGGAGAAAATACGCGA+CGG + chr8_3:51380438-51380457 None:intergenic 50.0%
! CGTATTTTCTCCTCCACCGT+TGG - chr8_3:51380441-51380460 Msa1293840:three_prime_UTR 50.0%
GAGACTGTGACGACATGAAG+AGG + chr8_3:51380491-51380510 None:intergenic 50.0%
TCTTCCGGTGTGAGATTCAC+CGG + chr8_3:51380749-51380768 None:intergenic 50.0%
TTTACGGCAGTCTGCTAGTC+TGG + chr8_3:51380828-51380847 None:intergenic 50.0%
ACTAGCAGACTGCCGTAAAG+CGG - chr8_3:51380829-51380848 Msa1293840:CDS 50.0%
TCAGCGGTGCAAACGATAAC+TGG - chr8_3:51380866-51380885 Msa1293840:CDS 50.0%
!! CAAATTCCGGTTGGTGTTGC+AGG - chr8_3:51380974-51380993 Msa1293840:intron 50.0%
GCAGGTCCACTGTTGTTAGA+TGG - chr8_3:51380992-51381011 Msa1293840:intron 50.0%
AGTTGAGTACACTGTGCCCA+TGG - chr8_3:51381015-51381034 Msa1293840:intron 50.0%
TGCAACAAGACACCCTTCAG+TGG + chr8_3:51381044-51381063 None:intergenic 50.0%
GCCGACGAAAACCTAACAAC+AGG + chr8_3:51381148-51381167 None:intergenic 50.0%
TCGCGAGTTTGGCTAAGTCA+TGG - chr8_3:51381689-51381708 Msa1293840:intron 50.0%
TCTCACTGCCAGTCCAAACA+TGG - chr8_3:51381783-51381802 Msa1293840:CDS 50.0%
TGCCAGTCCAAACATGGAGA+GGG - chr8_3:51381789-51381808 Msa1293840:CDS 50.0%
CTGTATCCCCTCTCCATGTT+TGG + chr8_3:51381799-51381818 None:intergenic 50.0%
AACATGGAGAGGGGATACAG+AGG - chr8_3:51381799-51381818 Msa1293840:CDS 50.0%
ACATGGAGAGGGGATACAGA+GGG - chr8_3:51381800-51381819 Msa1293840:CDS 50.0%
GGGGATACAGAGGGACAATA+TGG - chr8_3:51381809-51381828 Msa1293840:CDS 50.0%
TTGCGGATGGAGAGGTCAAT+AGG - chr8_3:51381947-51381966 Msa1293840:intron 50.0%
GACCTCGTCCCTCCATAAAT+TGG + chr8_3:51381975-51381994 None:intergenic 50.0%
ATGGAGGGACGAGGTCATAT+AGG - chr8_3:51381979-51381998 Msa1293840:intron 50.0%
TGGCATCACCAGTACTGCAA+CGG + chr8_3:51382191-51382210 None:intergenic 50.0%
!! TTGCAGTACTGGTGATGCCA+TGG - chr8_3:51382191-51382210 Msa1293840:intron 50.0%
!! TGCAGTACTGGTGATGCCAT+GGG - chr8_3:51382192-51382211 Msa1293840:intron 50.0%
TGATGCCATGGGGATGAACA+TGG - chr8_3:51382203-51382222 Msa1293840:intron 50.0%
TGACACCATGTTCATCCCCA+TGG + chr8_3:51382211-51382230 None:intergenic 50.0%
TCAGAGTGACTTCCCTGACA+TGG - chr8_3:51382260-51382279 Msa1293840:intron 50.0%
GCAGCTGTGAACTGGATTGA+AGG - chr8_3:51382454-51382473 Msa1293840:intron 50.0%
! TGAAGGGCGTGGTAAATCTG+TGG - chr8_3:51382471-51382490 Msa1293840:intron 50.0%
TCTGCTGTCTACATAGCCAC+CGG - chr8_3:51382646-51382665 Msa1293840:intron 50.0%
ATTCTGAGCAGGATCCTGAC+CGG + chr8_3:51382668-51382687 None:intergenic 50.0%
AGGTCCTTGCCATCATTCAC+GGG + chr8_3:51382724-51382743 None:intergenic 50.0%
TGTCACCATGCCTTCCATTG+AGG - chr8_3:51382753-51382772 Msa1293840:intron 50.0%
!! ATTCAGGTTGGTACTGTGGG+AGG - chr8_3:51383063-51383082 Msa1293840:CDS 50.0%
!! TTCAGGTTGGTACTGTGGGA+GGG - chr8_3:51383064-51383083 Msa1293840:CDS 50.0%
CTATTGGCCACCATTGTAGC+TGG - chr8_3:51383174-51383193 Msa1293840:CDS 50.0%
TACCGAACCAGCTACAATGG+TGG + chr8_3:51383184-51383203 None:intergenic 50.0%
!! GAGTACCGAACCAGCTACAA+TGG + chr8_3:51383187-51383206 None:intergenic 50.0%
AGACATGAGTGATAGCTCGC+CGG + chr8_3:51383211-51383230 None:intergenic 50.0%
CTCATGTCTGCAATTGCAGC+TGG - chr8_3:51383222-51383241 Msa1293840:CDS 50.0%
! GCAAGCTCACGAGACGATTT+TGG + chr8_3:51383298-51383317 None:intergenic 50.0%
AACACCTTAGTCCATGTGGG+AGG - chr8_3:51383527-51383546 Msa1293840:CDS 50.0%
! AATGCCTCCCACATGGACTA+AGG + chr8_3:51383534-51383553 None:intergenic 50.0%
!!! GGTTTTGAGGTTTTCGCCGC+CGG + chr8_3:51380321-51380340 None:intergenic 55.0%
!! GGTGGTGGTGGTAAGCTTCT+GGG + chr8_3:51380342-51380361 None:intergenic 55.0%
!! TGGTGGTGGTGGTAAGCTTC+TGG + chr8_3:51380343-51380362 None:intergenic 55.0%
AAGCTTACCACCACCACCAC+CGG - chr8_3:51380344-51380363 Msa1293840:three_prime_UTR 55.0%
! AGTGAGGTTTTCTCCGGTGG+TGG + chr8_3:51380360-51380379 None:intergenic 55.0%
TACGGATCTTCTCGCGCCAA+CGG + chr8_3:51380460-51380479 None:intergenic 55.0%
TTGGCGCGAGAAGATCCGTA+CGG - chr8_3:51380460-51380479 Msa1293840:three_prime_UTR 55.0%
ACCTAGAAGGTAAACGGCGG+AGG + chr8_3:51380543-51380562 None:intergenic 55.0%
CGGATCACGTACTTCCTTCC+CGG - chr8_3:51380574-51380593 Msa1293840:three_prime_UTR 55.0%
TCTTCGTCGGAGAGATCGTC+CGG + chr8_3:51380596-51380615 None:intergenic 55.0%
! TCGACAAGTGCTGCTGGACA+CGG + chr8_3:51380653-51380672 None:intergenic 55.0%
CACCGACGTAAAACCACCAC+CGG - chr8_3:51380673-51380692 Msa1293840:three_prime_UTR 55.0%
!! TGCCGGTGGTGGTTTTACGT+CGG + chr8_3:51380678-51380697 None:intergenic 55.0%
CGTAAAACCACCACCGGCAA+CGG - chr8_3:51380679-51380698 Msa1293840:three_prime_UTR 55.0%
ATTGGAGTTACCGTTGCCGG+TGG + chr8_3:51380692-51380711 None:intergenic 55.0%
! TGCACCGGTGAATCTCACAC+CGG - chr8_3:51380742-51380761 Msa1293840:CDS 55.0%
! GACGTATTGCCGCCGCTTTA+CGG + chr8_3:51380844-51380863 None:intergenic 55.0%
AGTGGACCTGCAACACCAAC+CGG + chr8_3:51380983-51381002 None:intergenic 55.0%
TGCCCATGGCTACCACTGAA+GGG - chr8_3:51381029-51381048 Msa1293840:intron 55.0%
CACCCTTCAGTGGTAGCCAT+GGG + chr8_3:51381034-51381053 None:intergenic 55.0%
ACACCCTTCAGTGGTAGCCA+TGG + chr8_3:51381035-51381054 None:intergenic 55.0%
CTGCCAGTCCAAACATGGAG+AGG - chr8_3:51381788-51381807 Msa1293840:CDS 55.0%
GCCAGTCCAAACATGGAGAG+GGG - chr8_3:51381790-51381809 Msa1293840:CDS 55.0%
TCCCCTCTCCATGTTTGGAC+TGG + chr8_3:51381794-51381813 None:intergenic 55.0%
GCTGTTGGAGTTGTTGCGGA+TGG - chr8_3:51381934-51381953 Msa1293840:intron 55.0%
TGGAGTTGTTGCGGATGGAG+AGG - chr8_3:51381939-51381958 Msa1293840:intron 55.0%
!! GCAGTACTGGTGATGCCATG+GGG - chr8_3:51382193-51382212 Msa1293840:intron 55.0%
AGAAAGCGGCAGCTGTGAAC+TGG - chr8_3:51382446-51382465 Msa1293840:intron 55.0%
GTGAACTGGATTGAAGGGCG+TGG - chr8_3:51382460-51382479 Msa1293840:intron 55.0%
! GAAGACTAGTGTGGAGGCAC+TGG - chr8_3:51382537-51382556 Msa1293840:intron 55.0%
CAGCAAGGGCTGATCCAGTT+AGG + chr8_3:51382585-51382604 None:intergenic 55.0%
CTAACTGGATCAGCCCTTGC+TGG - chr8_3:51382583-51382602 Msa1293840:intron 55.0%
TGTCTACATAGCCACCGGTC+AGG - chr8_3:51382651-51382670 Msa1293840:intron 55.0%
GGAACCCGTGAATGATGGCA+AGG - chr8_3:51382717-51382736 Msa1293840:intron 55.0%
!! TCAGGTTGGTACTGTGGGAG+GGG - chr8_3:51383065-51383084 Msa1293840:CDS 55.0%
TGCACCTGGAGATTCTGTGC+TGG + chr8_3:51383145-51383164 None:intergenic 55.0%
GGCCACCATTGTAGCTGGTT+CGG - chr8_3:51383179-51383198 Msa1293840:CDS 55.0%
GGGGACCAATGCCTCTCATA+AGG - chr8_3:51383347-51383366 Msa1293840:CDS 55.0%
!! AAGGACTATTGGTGGTGGCC+AGG - chr8_3:51383408-51383427 Msa1293840:CDS 55.0%
!! TTTGAGGTTTTCGCCGCCGG+CGG + chr8_3:51380318-51380337 None:intergenic 60.0%
!!! GTTTTCTCCGGTGGTGGTGG+TGG + chr8_3:51380354-51380373 None:intergenic 60.0%
!! GAGGTTTTCTCCGGTGGTGG+TGG + chr8_3:51380357-51380376 None:intergenic 60.0%
GCCTCCGCCGTTTACCTTCT+AGG - chr8_3:51380539-51380558 Msa1293840:three_prime_UTR 60.0%
CTTCGTCGGAGAGATCGTCC+GGG + chr8_3:51380595-51380614 None:intergenic 60.0%
!! TCGGTGTCGACAAGTGCTGC+TGG + chr8_3:51380659-51380678 None:intergenic 60.0%
AGCAGACTGCCGTAAAGCGG+CGG - chr8_3:51380832-51380851 Msa1293840:CDS 60.0%
GGCGGCAATACGTCGTTCAG+CGG - chr8_3:51380850-51380869 Msa1293840:CDS 60.0%
GTGCCCATGGCTACCACTGA+AGG - chr8_3:51381028-51381047 Msa1293840:intron 60.0%
GGATCCCTTGCAAGGGTTGC+AGG - chr8_3:51381563-51381582 Msa1293840:CDS 60.0%
CGGTCCTGCAACCCTTGCAA+GGG + chr8_3:51381570-51381589 None:intergenic 60.0%
ACGGTCCTGCAACCCTTGCA+AGG + chr8_3:51381571-51381590 None:intergenic 60.0%
TGCAAGGGTTGCAGGACCGT+TGG - chr8_3:51381571-51381590 Msa1293840:CDS 60.0%
TCAGCCCTTGCTGGTGCTCT+TGG - chr8_3:51382592-51382611 Msa1293840:intron 60.0%
CAGCCCTTGCTGGTGCTCTT+GGG - chr8_3:51382593-51382612 Msa1293840:intron 60.0%
AGCCCTTGCTGGTGCTCTTG+GGG - chr8_3:51382594-51382613 Msa1293840:intron 60.0%
!! CAGGTTGGTACTGTGGGAGG+GGG - chr8_3:51383066-51383085 Msa1293840:CDS 60.0%
!! GTAGCTGGTTCGGTACTCGC+CGG - chr8_3:51383189-51383208 Msa1293840:CDS 60.0%
!! GACTATTGGTGGTGGCCAGG+TGG - chr8_3:51383411-51383430 Msa1293840:CDS 60.0%
CTTCCTCCACGTTCTCCCGC+CGG - chr8_3:51380299-51380318 Msa1293840:three_prime_UTR 65.0%
! TTGAGGTTTTCGCCGCCGGC+GGG + chr8_3:51380317-51380336 None:intergenic 65.0%
TCTTCTCGCGCCAACGGTGG+AGG + chr8_3:51380454-51380473 None:intergenic 65.0%
GGATCTTCTCGCGCCAACGG+TGG + chr8_3:51380457-51380476 None:intergenic 65.0%
GTCGGAGAGATCGTCCGGGA+AGG + chr8_3:51380591-51380610 None:intergenic 65.0%
! AGTGCTGCTGGACACGGTCC+TGG + chr8_3:51380647-51380666 None:intergenic 65.0%
GGAGTTACCGTTGCCGGTGG+TGG + chr8_3:51380689-51380708 None:intergenic 65.0%
GCCCTTGCTGGTGCTCTTGG+GGG - chr8_3:51382595-51382614 Msa1293840:intron 65.0%
!! CCCCCCAAGAGCACCAGCAA+GGG + chr8_3:51382599-51382618 None:intergenic 65.0%
CCCTTGCTGGTGCTCTTGGG+GGG - chr8_3:51382596-51382615 Msa1293840:intron 65.0%
!! ACCCCCCAAGAGCACCAGCA+AGG + chr8_3:51382600-51382619 None:intergenic 65.0%
CTGAGCAGGATCCTGACCGG+TGG + chr8_3:51382665-51382684 None:intergenic 65.0%
GGCGCCAGCACAGAATCTCC+AGG - chr8_3:51383138-51383157 Msa1293840:CDS 65.0%
CCTCCACGTTCTCCCGCCGG+CGG - chr8_3:51380302-51380321 Msa1293840:three_prime_UTR 75.0%
! CCGCCGGCGGGAGAACGTGG+AGG + chr8_3:51380305-51380324 None:intergenic 80.0%
! TCGCCGCCGGCGGGAGAACG+TGG + chr8_3:51380308-51380327 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 51380040 51383990 51380040 ID=Msa1293840;Name=Msa1293840
chr8_3 mRNA 51380040 51383990 51380040 ID=Msa1293840-mRNA-1;Parent=Msa1293840;Name=Msa1293840-mRNA-1;_AED=0.04;_eAED=0.04;_QI=232|1|1|1|1|1|4|679|580
chr8_3 exon 51380040 51380961 51380040 ID=Msa1293840-mRNA-1:exon:14333;Parent=Msa1293840-mRNA-1
chr8_3 exon 51381256 51381602 51381256 ID=Msa1293840-mRNA-1:exon:14332;Parent=Msa1293840-mRNA-1
chr8_3 exon 51381730 51381911 51381730 ID=Msa1293840-mRNA-1:exon:14331;Parent=Msa1293840-mRNA-1
chr8_3 exon 51382788 51383990 51382788 ID=Msa1293840-mRNA-1:exon:14330;Parent=Msa1293840-mRNA-1
chr8_3 five_prime_UTR 51383759 51383990 51383759 ID=Msa1293840-mRNA-1:five_prime_utr;Parent=Msa1293840-mRNA-1
chr8_3 CDS 51382788 51383758 51382788 ID=Msa1293840-mRNA-1:cds;Parent=Msa1293840-mRNA-1
chr8_3 CDS 51381730 51381911 51381730 ID=Msa1293840-mRNA-1:cds;Parent=Msa1293840-mRNA-1
chr8_3 CDS 51381256 51381602 51381256 ID=Msa1293840-mRNA-1:cds;Parent=Msa1293840-mRNA-1
chr8_3 CDS 51380719 51380961 51380719 ID=Msa1293840-mRNA-1:cds;Parent=Msa1293840-mRNA-1
chr8_3 three_prime_UTR 51380040 51380718 51380040 ID=Msa1293840-mRNA-1:three_prime_utr;Parent=Msa1293840-mRNA-1
Gene Sequence

>Msa1293840

ATGGACGCTCGCCGGAGACTTAAATCTCTTCCTCCACGTTCTCCCGCCGGCGGCGAAAACCTCAAAACCCAGAAGCTTACCACCACCACCACCGGAGAAAACCTCACTTCACAGACCGTTTTTCTCTGCGTCACTAACGCTGTATTCTTCGGCGTTTTCTTCTCCGTCGCGTATTTTCTCCTCCACCGTTGGCGCGAGAAGATCCGTACGGAAACTCCTCTTCATGTCGTCACAGTCTCTGAAACCGCCGCCATCGTTTCTCTTATAGCCTCCGCCGTTTACCTTCTAGGTTTCTTCGGTATCGGATCACGTACTTCCTTCCCGGACGATCTCTCCGACGAAGAGATTCTCGCTAAAGAAGACTCTCGAAAACCAGGACCGTGTCCAGCAGCACTTGTCGACACCGACGTAAAACCACCACCGGCAACGGTAACTCCAATTGTAGCTCCGGTGAAGATCTATGAAGTTGTTGCACCGGTGAATCTCACACCGGAAGACGAAGAAATTGCAAAATCAGTTGTCACCGGTTCAATTCCGTCGTATTCCTTAGAATCCAGACTAGCAGACTGCCGTAAAGCGGCGGCAATACGTCGTTCAGCGGTGCAAACGATAACTGGAAAATCTCTAGAAGGTTTACCGTTGGAAGGTTTCGATTACGATTCGATATTGGGACAGTGTTGTGAAATGCCGATAGGGTTTGTTCAAATTCCGGTTGGTGTTGCAGGTCCACTGTTGTTAGATGGAGTTGAGTACACTGTGCCCATGGCTACCACTGAAGGGTGTCTTGTTGCAAGTACCAATAGAGGGTGTAAAGCTATTCATGTTTCTGGTGGAGCTTCTTCTGTTTTGCTTAGAGATGGAATGACTAGAGCACCTGTTGTTAGGTTTTCGTCGGCAAAAAGAGCTGCTGAGTTGAAGTTTTTCTTGGAAGATCCGCTTAATTTTGATACACTTGCTGTCACTTTCAACAAGTCAAGCAGATTTGCTAGATTGCAGAGCATTCAGCCTACAATTGCTGGCAAGAATTTGTACATTCGATTCCGTTGCAGTACTGGTGATGCCATGGGGATGAACATGGTGTCAAAAGGTGTTCAAAATGTCCTTGATTTTCTTCAGAGTGACTTCCCTGACATGGATGTCATTGGAATCTCAGGAAATTTCTGTTCTGACAAGAAAGCGGCAGCTGTGAACTGGATTGAAGGGCGTGGTAAATCTGTGGTGTGTGAGGCTGTAATTAAGGAAGAGGTGGTGAAGAAAGTGTTGAAGACTAGTGTGGAGGCACTGGTTGAGCTTAACATGCTTAAGAACCTAACTGGATCAGCCCTTGCTGGTGCTCTTGGGGGGTTCAATGCTCATGCTAGCAATATTGTCTCTGCTGTCTACATAGCCACCGGTCAGGATCCTGCTCAGAATGTTGAGAGTTCTCACTGTATTACTATGATGGAACCCGTGAATGATGGCAAGGACCTTCACATTTCTGTCACCATGCCTTCCATTGAGGTTGGTACTGTGGGAGGGGGAACACAACTTGCATCTCAGTCAGCTTGTCTTAATTTACTTGGTGTTAAGGGCGCCAGCACAGAATCTCCAGGTGCAAATGCTAGGCTATTGGCCACCATTGTAGCTGGTTCGGTACTCGCCGGCGAGCTATCACTCATGTCTGCAATTGCAGCTGGACAACTAGTTAAGAGTCACATGAAATACAACAGATCTAGCAGGGATATGTCCAAAATCGTCTCGTGA
Protein sequence

>Msa1293840

MDARRRLKSLPPRSPAGGENLKTQKLTTTTTGENLTSQTVFLCVTNAVFFGVFFSVAYFLLHRWREKIRTETPLHVVTVSETAAIVSLIASAVYLLGFFGIGSRTSFPDDLSDEEILAKEDSRKPGPCPAALVDTDVKPPPATVTPIVAPVKIYEVVAPVNLTPEDEEIAKSVVTGSIPSYSLESRLADCRKAAAIRRSAVQTITGKSLEGLPLEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGVEYTVPMATTEGCLVASTNRGCKAIHVSGGASSVLLRDGMTRAPVVRFSSAKRAAELKFFLEDPLNFDTLAVTFNKSSRFARLQSIQPTIAGKNLYIRFRCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVEALVELNMLKNLTGSALAGALGGFNAHASNIVSAVYIATGQDPAQNVESSHCITMMEPVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASTESPGANARLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRDMSKIVS*