AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1253520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253520 MtrunA17_Chr8g0370001 98.113 583 9 1 1 581 1 583 0.0 1165
Msa1253520 MtrunA17_Chr5g0407521 76.543 567 107 5 22 581 20 567 0.0 877
Msa1253520 MtrunA17_Chr5g0442831 74.699 581 111 6 1 581 1 545 0.0 862
Msa1253520 MtrunA17_Chr5g0409021 78.108 539 97 3 43 581 25 542 0.0 854
Msa1253520 MtrunA17_Chr5g0408991 78.108 539 97 3 43 581 25 542 0.0 854
Msa1253520 MtrunA17_Chr5g0408981 78.108 539 97 3 43 581 25 542 0.0 854
Msa1253520 MtrunA17_Chr5g0409011 78.108 539 97 3 43 581 25 542 0.0 854
Msa1253520 MtrunA17_Chr5g0409001 77.922 539 98 3 43 581 25 542 0.0 853
Msa1253520 MtrunA17_Chr5g0409031 77.737 539 102 2 43 581 30 550 0.0 853
Msa1253520 MtrunA17_Chr5g0440371 70.408 588 144 5 1 581 1 565 0.0 797
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253520 AT1G76490.1 70.034 594 149 6 1 577 51 632 0.0 820
Msa1253520 AT2G17370.1 71.322 537 132 6 43 576 37 554 0.0 759

Find 197 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTCTATGAAAATTATTT+TGG 0.119826 8_2:+51005514 None:intergenic
GCCTCCGCCGTTTACCTTCT+AGG 0.154239 8_2:-51008956 Msa1253520:CDS
TGGTGGTGGTGGTAAGCTTC+TGG 0.165541 8_2:+51009158 None:intergenic
TGTAAAGCTATTCATGTTTC+TGG 0.186633 8_2:-51008416 Msa1253520:CDS
GCAAGCTCACGAAACGATTT+TGG 0.210048 8_2:+51006116 None:intergenic
ATACCGACATCCAAAGTATT+TGG 0.261590 8_2:+51005539 None:intergenic
CAAATTCCGGTTGGTGTTGC+GGG 0.266196 8_2:-51008521 Msa1253520:CDS
CTGGCAAGAATTTGTACATT+AGG 0.277016 8_2:-51007244 Msa1253520:CDS
TTTGATTACGATTCGATATT+GGG 0.293478 8_2:-51008575 Msa1253520:CDS
TCAGCGGTGCAAACGATAAC+TGG 0.306795 8_2:-51008629 Msa1253520:CDS
CTCAATTTACTTGGTGTTAA+GGG 0.320578 8_2:-51006294 Msa1253520:CDS
GGTGGTGGTGGTAAGCTTCT+GGG 0.324241 8_2:+51009159 None:intergenic
TCAGCCCTTGCTGGTGCTCT+TGG 0.329249 8_2:-51006817 Msa1253520:CDS
TTTGCAATTTCCTCGTCTTC+CGG 0.344235 8_2:+51008734 None:intergenic
AGAAAGCAGCGGCTGTAAAC+TGG 0.347636 8_2:-51006963 Msa1253520:CDS
GTCTGCTAGTCTGGATTCTA+AGG 0.347797 8_2:+51008679 None:intergenic
TCTCAATTTACTTGGTGTTA+AGG 0.349965 8_2:-51006295 Msa1253520:CDS
GATAGGGTTTGTTCAAATTC+CGG 0.351442 8_2:-51008534 Msa1253520:CDS
TGACTAGAGCACCTGTTGTT+AGG 0.353746 8_2:-51008361 Msa1253520:CDS
AATAGCTTTACACCCTCTAT+TGG 0.356892 8_2:+51008427 None:intergenic
GACGTATTGCCGCTGCTTTA+CGG 0.359907 8_2:+51008654 None:intergenic
CTATTGGCCACCATTGTTGC+CGG 0.367634 8_2:-51006237 Msa1253520:CDS
CTTCTAGGTTTCTTCGGTAT+CGG 0.393361 8_2:-51008941 Msa1253520:CDS
CCCTTGCTGGTGCTCTTGGT+GGG 0.400026 8_2:-51006813 Msa1253520:CDS
TTTACGGCAGTCTGCTAGTC+TGG 0.401473 8_2:+51008670 None:intergenic
AGCATTCAACCTACTATTGC+TGG 0.403783 8_2:-51007263 Msa1253520:CDS
AACATGCTTAAGAACCTAAC+TGG 0.404216 8_2:-51006841 Msa1253520:CDS
TTCTCCGGTGGTGGTGGTGG+TGG 0.409726 8_2:+51009147 None:intergenic
TACAGCCGCTGCTTTCTTGT+CGG 0.410250 8_2:+51006969 None:intergenic
ACAATTGGAGTTACCGTTGC+CGG 0.414636 8_2:+51008803 None:intergenic
GCCCTTGCTGGTGCTCTTGG+TGG 0.414829 8_2:-51006814 Msa1253520:CDS
GGAGTTACCGTTGCCGGTGG+TGG 0.417634 8_2:+51008809 None:intergenic
CGGATCACGAACTTCCTTCC+CGG 0.424473 8_2:-51008921 Msa1253520:CDS
CTAACTGGATCAGCCCTTGC+TGG 0.430519 8_2:-51006826 Msa1253520:CDS
ATCTTCACCGGAGCTACAAT+TGG 0.432713 8_2:+51008788 None:intergenic
ATTAAGATATTAACTAAAAC+CGG 0.435442 8_2:+51005457 None:intergenic
ATTAGGTTCCGTTGCAGTAC+AGG 0.438518 8_2:-51007227 Msa1253520:CDS
AAGGTCCTTGCCATCATTCA+CGG 0.439029 8_2:+51006687 None:intergenic
ATAACTGGAAAATCTCTAGA+AGG 0.440221 8_2:-51008614 Msa1253520:CDS
ATGGATGTCATTGGAATCTC+AGG 0.445773 8_2:-51007128 Msa1253520:intron
TCAGCTTGTCTCAATTTACT+TGG 0.451888 8_2:-51006303 Msa1253520:CDS
GTTTACCTTCTAGGTTTCTT+CGG 0.453882 8_2:-51008947 Msa1253520:CDS
AAAACAAGTGGCTAAACCTT+TGG 0.455508 8_2:-51005815 Msa1253520:three_prime_UTR
CAGCAAGGGCTGATCCAGTT+AGG 0.457590 8_2:+51006827 None:intergenic
TCTTCATCGGAGAGATCATC+CGG 0.461700 8_2:+51008902 None:intergenic
GCGGCTGTAAACTGGATTGA+AGG 0.463386 8_2:-51006955 Msa1253520:CDS
GTCACTAACGCTGTATTCTT+CGG 0.463821 8_2:-51009094 Msa1253520:CDS
GGCACTTTGTCCAAATACTT+TGG 0.466447 8_2:-51005549 Msa1253520:three_prime_UTR
CTCATGTCTGCAATTGCAGC+TGG 0.470089 8_2:-51006189 Msa1253520:CDS
CTCGCCCGCGAGTACTGAAC+CGG 0.476229 8_2:+51006218 None:intergenic
ATTCCAATGACATCCATGTC+AGG 0.476477 8_2:+51007134 None:intergenic
AGTGGACCCGCAACACCAAC+CGG 0.478518 8_2:+51008515 None:intergenic
AAGGACTATTGGTGGTGGCC+AGG 0.478957 8_2:-51006003 Msa1253520:three_prime_UTR
AGTGCTGCTGGACACGGTCC+TGG 0.480294 8_2:+51008851 None:intergenic
TCAAATTCCGGTTGGTGTTG+CGG 0.481667 8_2:-51008522 Msa1253520:CDS
TTTGTCCTTATGAGAGGCAT+TGG 0.482183 8_2:+51006059 None:intergenic
GGGGACCAATGCCTCTCATA+AGG 0.484549 8_2:-51006064 Msa1253520:three_prime_UTR
CACTAATTTCTGTACCTCAA+TGG 0.486090 8_2:+51006642 None:intergenic
TCAGGTTGGTACTGTGGGAG+GGG 0.488097 8_2:-51006346 Msa1253520:intron
ATAATTCAGGTTGGTACTGT+GGG 0.489921 8_2:-51006351 Msa1253520:intron
TTCCCTGACATGGATGTCAT+TGG 0.494706 8_2:-51007137 Msa1253520:CDS
AAATTCTTGCCAGCAATAGT+AGG 0.494781 8_2:+51007254 None:intergenic
TGCACCTGGAGATTCTGTGC+TGG 0.497072 8_2:+51006269 None:intergenic
AGGTGCAAATGCTAGGCTAT+TGG 0.497308 8_2:-51006253 Msa1253520:CDS
CGATACCGAAGAAACCTAGA+AGG 0.505448 8_2:+51008942 None:intergenic
GAAGAAACCTAGAAGGTAAA+CGG 0.508337 8_2:+51008949 None:intergenic
GCCGACGAAAACCTAACAAC+AGG 0.509711 8_2:+51008350 None:intergenic
ATCATTCACGGGTTCCATCA+TGG 0.511734 8_2:+51006699 None:intergenic
ATCTCTAGAAGGTTTACCGT+TGG 0.513091 8_2:-51008603 Msa1253520:CDS
AAAGAAGACTCGCGAAAACC+AGG 0.514367 8_2:-51008869 Msa1253520:CDS
TCTTCTCACGCCAACGGTGG+AGG 0.517024 8_2:+51009044 None:intergenic
TGTCACTATGCCTTCCATTG+AGG 0.518080 8_2:-51006656 Msa1253520:intron
GGTGTGTGAGGCTGTTATTA+AGG 0.520587 8_2:-51006917 Msa1253520:CDS
CTAGAAGGTTTACCGTTGGA+AGG 0.521102 8_2:-51008599 Msa1253520:CDS
TCGGTGTCGACAAGTGCTGC+TGG 0.521714 8_2:+51008839 None:intergenic
AATGCCTCCCACATGGACTA+AGG 0.524949 8_2:+51005882 None:intergenic
GGAATACGACGGAATTGAAC+CGG 0.526078 8_2:+51008700 None:intergenic
TGTTGCGGGTCCACTGTTGT+TGG 0.526588 8_2:-51008507 Msa1253520:CDS
GAGTTGTTAATAATAGTCTC+TGG 0.526987 8_2:-51005630 Msa1253520:three_prime_UTR
CACAACAATAAACTTGTAGA+GGG 0.527980 8_2:-51006084 Msa1253520:three_prime_UTR
CGTAAAACCACCACCGGCAA+CGG 0.528134 8_2:-51008816 Msa1253520:CDS
GAACTCTCAACATTCTGAGC+AGG 0.528481 8_2:+51006733 None:intergenic
GGTAACTCCAATTGTAGCTC+CGG 0.530278 8_2:-51008795 Msa1253520:CDS
AATCTCCAGGTGCAAATGCT+AGG 0.530949 8_2:-51006260 Msa1253520:CDS
TCTTCCGGTGTTAGATTCAC+CGG 0.530999 8_2:+51008749 None:intergenic
ACCTAGAAGGTAAACGGCGG+AGG 0.531795 8_2:+51008955 None:intergenic
TGTCTACATAGCCACTGGTC+AGG 0.531826 8_2:-51006758 Msa1253520:CDS
TTTAAGGGATATTCCTGTGC+CGG 0.535342 8_2:-51005476 Msa1253520:three_prime_UTR
TTGGAAAATGAGAGGGAGGG+AGG 0.535656 8_2:+51009376 None:intergenic
TTCAAAAGGACTATTGGTGG+TGG 0.540230 8_2:-51006008 Msa1253520:three_prime_UTR
GGCGCCAGCACAGAATCTCC+AGG 0.540230 8_2:-51006273 Msa1253520:CDS
TGCAGTACAGGTGATGCCAT+GGG 0.544320 8_2:-51007215 Msa1253520:CDS
TGAAATACAACAGATCTAGC+AGG 0.545624 8_2:-51006146 Msa1253520:CDS
TCGACAAGTGCTGCTGGACA+CGG 0.546888 8_2:+51008845 None:intergenic
GCGGGTCCACTGTTGTTGGA+TGG 0.547013 8_2:-51008503 Msa1253520:CDS
TTCAGGTTGGTACTGTGGGA+GGG 0.548296 8_2:-51006347 Msa1253520:intron
ATAAGTGTTGAATCAGAAGA+TGG 0.548670 8_2:-51005840 Msa1253520:three_prime_UTR
AGGTCCTTGCCATCATTCAC+GGG 0.549056 8_2:+51006688 None:intergenic
TGTCCAAATACTTTGGATGT+CGG 0.549454 8_2:-51005542 Msa1253520:three_prime_UTR
TTGGTTGGAAAATGAGAGGG+AGG 0.550703 8_2:+51009372 None:intergenic
TTTAGCGAGAATCTCTTCAT+CGG 0.551368 8_2:+51008889 None:intergenic
TCAGAGTGACTTCCCTGACA+TGG 0.551867 8_2:-51007147 Msa1253520:CDS
TTCGTAGATTCAAAACTCGT+CGG 0.554703 8_2:-51009261 Msa1253520:five_prime_UTR
TCTGCTGTCTACATAGCCAC+TGG 0.555493 8_2:-51006763 Msa1253520:CDS
CGGCTGTAAACTGGATTGAA+GGG 0.559547 8_2:-51006954 Msa1253520:CDS
TTCTCACTGTATCACCATGA+TGG 0.559728 8_2:-51006713 Msa1253520:CDS
CACCGACGTAAAACCACCAC+CGG 0.559984 8_2:-51008822 Msa1253520:CDS
AGTGTTGTGAAATGCCGATA+GGG 0.561600 8_2:-51008550 Msa1253520:CDS
CTTCCTCCACGTTCTCCCAC+CGG 0.562240 8_2:-51009199 Msa1253520:CDS
TCGCCGCCGGTGGGAGAACG+TGG 0.562513 8_2:+51009193 None:intergenic
ACAGAAAAGGTTGCATCTAG+TGG 0.563519 8_2:-51005911 Msa1253520:three_prime_UTR
ATTCAGGTTGGTACTGTGGG+AGG 0.563884 8_2:-51006348 Msa1253520:intron
ATGATGGAACCCGTGAATGA+TGG 0.565081 8_2:-51006697 Msa1253520:CDS
AATAATTCAGGTTGGTACTG+TGG 0.566379 8_2:-51006352 Msa1253520:intron
ACACCCTTCAGTGGTAGCCA+TGG 0.566660 8_2:+51008463 None:intergenic
AAAGCTATTCATGTTTCTGG+TGG 0.566843 8_2:-51008413 Msa1253520:CDS
ACACAACAATAAACTTGTAG+AGG 0.567966 8_2:-51006085 Msa1253520:three_prime_UTR
TGACACCATGTTCATCCCCA+TGG 0.567983 8_2:+51007199 None:intergenic
CAGGTTGGTACTGTGGGAGG+GGG 0.569796 8_2:-51006345 Msa1253520:CDS
CCCACCAAGAGCACCAGCAA+GGG 0.572086 8_2:+51006813 None:intergenic
TTGCAGTACAGGTGATGCCA+TGG 0.575598 8_2:-51007216 Msa1253520:CDS
GAGACTGTGACGACATGAAG+AGG 0.576532 8_2:+51009007 None:intergenic
ACAACTTCATAGATCTTCAC+CGG 0.578120 8_2:+51008776 None:intergenic
GTGCCCATGGCTACCACTGA+AGG 0.579062 8_2:-51008467 Msa1253520:CDS
AATTTCTGTACCTCAATGGA+AGG 0.582480 8_2:+51006646 None:intergenic
ATTGCAAAATCAGTTGTCAC+CGG 0.584238 8_2:-51008719 Msa1253520:CDS
CAGTGTTGTGAAATGCCGAT+AGG 0.585519 8_2:-51008551 Msa1253520:CDS
ATATTAACTAAAACCGGCAC+AGG 0.587124 8_2:+51005463 None:intergenic
TACGGATCTTCTCACGCCAA+CGG 0.588503 8_2:+51009038 None:intergenic
GAATCTAACACCGGAAGACG+AGG 0.588627 8_2:-51008744 Msa1253520:CDS
GGCTGTTATTAAGGAAGAGG+TGG 0.590912 8_2:-51006908 Msa1253520:CDS
CACCCTTCAGTGGTAGCCAT+GGG 0.593635 8_2:+51008464 None:intergenic
TGTTAATAATAGTCTCTGGT+TGG 0.595109 8_2:-51005626 Msa1253520:three_prime_UTR
AAGAATCAAACTAATGCCAA+AGG 0.595697 8_2:+51005799 None:intergenic
GAAAGTGTTGAAGACTAGTG+TGG 0.595958 8_2:-51006881 Msa1253520:CDS
TGAGGCTGTTATTAAGGAAG+AGG 0.596038 8_2:-51006911 Msa1253520:CDS
AGCGGCAATACGTCGTTCAG+CGG 0.596258 8_2:-51008645 Msa1253520:CDS
TGTTGCCGGTTCAGTACTCG+CGG 0.597162 8_2:-51006223 Msa1253520:CDS
CTTGTTGCAAGTACCAATAG+AGG 0.597773 8_2:-51008440 Msa1253520:CDS
GGGATGAACATGGTGTCAAA+AGG 0.598387 8_2:-51007194 Msa1253520:CDS
GGGTTTGTTCAAATTCCGGT+TGG 0.602041 8_2:-51008530 Msa1253520:CDS
GAGTACTGAACCGGCAACAA+TGG 0.603695 8_2:+51006227 None:intergenic
TTGATTGGTTGGAAAATGAG+AGG 0.605148 8_2:+51009368 None:intergenic
GGAATTTGAACAAACCCTAT+CGG 0.606204 8_2:+51008536 None:intergenic
TGGCATCACCTGTACTGCAA+CGG 0.607862 8_2:+51007219 None:intergenic
TACTGAACCGGCAACAATGG+TGG 0.608927 8_2:+51006230 None:intergenic
GCAAGTGTATCAAAATTAAG+CGG 0.609171 8_2:+51008290 None:intergenic
GAGGAAGAGATTTAAGTCTC+CGG 0.609171 8_2:+51009215 None:intergenic
AGTCACTCTGAAGAAAATCA+AGG 0.609778 8_2:+51007159 None:intergenic
AGCAGACTGCCGTAAAGCAG+CGG 0.609800 8_2:-51008663 Msa1253520:CDS
GTAAACTGGATTGAAGGGCG+TGG 0.612589 8_2:-51006949 Msa1253520:CDS
AATAGCCTAGCATTTGCACC+TGG 0.614511 8_2:+51006255 None:intergenic
TTCCAATGACATCCATGTCA+GGG 0.618523 8_2:+51007135 None:intergenic
AAAAGACAATGCCTCCCACA+TGG 0.620407 8_2:+51005875 None:intergenic
ATTGGAGTTACCGTTGCCGG+TGG 0.621066 8_2:+51008806 None:intergenic
TGCCCATGGCTACCACTGAA+GGG 0.628203 8_2:-51008466 Msa1253520:CDS
TGATTGGTTGGAAAATGAGA+GGG 0.628469 8_2:+51009369 None:intergenic
GGTAAACACCTTAGTCCATG+TGG 0.628776 8_2:-51005890 Msa1253520:three_prime_UTR
GATCTATGAAGTTGTTGCAC+CGG 0.629263 8_2:-51008768 Msa1253520:CDS
GCATAGTGACAGAAATGTGA+AGG 0.633024 8_2:+51006668 None:intergenic
GAAATACAACAGATCTAGCA+GGG 0.634441 8_2:-51006145 Msa1253520:CDS
CAGAAGATGGAGAAAACAAG+TGG 0.636195 8_2:-51005827 Msa1253520:three_prime_UTR
ATCGGAGAGATCATCCGGGA+AGG 0.638459 8_2:+51008907 None:intergenic
GTTGCCGGTTCAGTACTCGC+GGG 0.640246 8_2:-51006222 Msa1253520:CDS
ACCCACCAAGAGCACCAGCA+AGG 0.640374 8_2:+51006812 None:intergenic
GACTATTGGTGGTGGCCAGG+TGG 0.643231 8_2:-51006000 Msa1253520:three_prime_UTR
CTGTTCCGACAAGAAAGCAG+CGG 0.643635 8_2:-51006974 Msa1253520:CDS
TGCAACAAGACACCCTTCAG+TGG 0.643810 8_2:+51008454 None:intergenic
TATAAGAGAAACGATGGCGG+CGG 0.644367 8_2:+51008979 None:intergenic
TGGTAAGTCTGTGGTGTGTG+AGG 0.646294 8_2:-51006929 Msa1253520:CDS
GGATCTTCTCACGCCAACGG+TGG 0.648620 8_2:+51009041 None:intergenic
TTGTTGCAAGTACCAATAGA+GGG 0.651666 8_2:-51008439 Msa1253520:CDS
TGATGCCATGGGGATGAACA+TGG 0.657109 8_2:-51007204 Msa1253520:CDS
TGGTTGGAAAATGAGAGGGA+GGG 0.663143 8_2:+51009373 None:intergenic
GGAGGCTATAAGAGAAACGA+TGG 0.663583 8_2:+51008973 None:intergenic
AGTTGAGTACACTGTGCCCA+TGG 0.665357 8_2:-51008480 Msa1253520:CDS
CATGAAGAGGAGTTTCCGTA+CGG 0.667785 8_2:+51009020 None:intergenic
GTTTATTGTTGTGTTGTGTG+AGG 0.668370 8_2:+51006094 None:intergenic
TCGTAATCAAAACCTTCCAA+CGG 0.671722 8_2:+51008587 None:intergenic
GGAACCCGTGAATGATGGCA+AGG 0.672840 8_2:-51006692 Msa1253520:CDS
GGCTATAAGAGAAACGATGG+CGG 0.673455 8_2:+51008976 None:intergenic
CTTCATCGGAGAGATCATCC+GGG 0.673784 8_2:+51008903 None:intergenic
TGAAGGGCGTGGTAAGTCTG+TGG 0.674377 8_2:-51006938 Msa1253520:CDS
CCGCCGGTGGGAGAACGTGG+AGG 0.675831 8_2:+51009196 None:intergenic
CTGGATTCTAAGGAATACGA+CGG 0.686525 8_2:+51008689 None:intergenic
TTGGCGTGAGAAGATCCGTA+CGG 0.687150 8_2:-51009035 Msa1253520:CDS
ACAACAATAAACTTGTAGAG+GGG 0.687899 8_2:-51006083 Msa1253520:three_prime_UTR
TCAACTCCATCCAACAACAG+TGG 0.690537 8_2:+51008497 None:intergenic
CTGAGCAGGATCCTGACCAG+TGG 0.691176 8_2:+51006747 None:intergenic
AGTGTTGAAGACTAGTGTGG+AGG 0.700194 8_2:-51006878 Msa1253520:CDS
TGCACCGGTGAATCTAACAC+CGG 0.704033 8_2:-51008753 Msa1253520:CDS
AACACCTTAGTCCATGTGGG+AGG 0.704427 8_2:-51005886 Msa1253520:three_prime_UTR
GTGGAGGAGAAAATACGCGA+CGG 0.712614 8_2:+51009060 None:intergenic
GTAAACACCTTAGTCCATGT+GGG 0.713630 8_2:-51005889 Msa1253520:three_prime_UTR
CCTCCACGTTCTCCCACCGG+CGG 0.718861 8_2:-51009196 Msa1253520:CDS
GCAGTACAGGTGATGCCATG+GGG 0.741771 8_2:-51007214 Msa1253520:CDS
GAAACCTAGAAGGTAAACGG+CGG 0.781690 8_2:+51008952 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATTCATTAACAATTTAA+TGG - chr8_2:51007586-51007605 Msa1253520:intron 15.0%
!! TCATTCATTAACAATTTAAT+GGG - chr8_2:51007587-51007606 Msa1253520:intron 15.0%
!! TATGTTTATTTAATTCCAAA+GGG + chr8_2:51008293-51008312 None:intergenic 15.0%
!! TTATGTTTATTTAATTCCAA+AGG + chr8_2:51008294-51008313 None:intergenic 15.0%
!!! TAGATTTTGTTTAATAATTC+AGG - chr8_2:51008543-51008562 Msa1253520:CDS 15.0%
!!! ACTAAAATAACAAATTTTTG+AGG + chr8_2:51009191-51009210 None:intergenic 15.0%
!!! AATCTCTATGAAAATTATTT+TGG + chr8_2:51009396-51009415 None:intergenic 15.0%
!! ATTAAGATATTAACTAAAAC+CGG + chr8_2:51009453-51009472 None:intergenic 15.0%
!! GATTGAATTAAAAAAGTTGT+TGG + chr8_2:51005451-51005470 None:intergenic 20.0%
!!! TTTGAAAGTTTTTGTTTGAT+TGG + chr8_2:51005557-51005576 None:intergenic 20.0%
!! TCATAGATATGAAATGATTT+AGG - chr8_2:51006982-51007001 Msa1253520:CDS 20.0%
!! CATAGATATGAAATGATTTA+GGG - chr8_2:51006983-51007002 Msa1253520:CDS 20.0%
!!! ATTTTATCTTGTAGGAAATT+AGG - chr8_2:51007014-51007033 Msa1253520:intron 20.0%
!!! TTTTAACAAAAGTTTGACTT+TGG + chr8_2:51007234-51007253 None:intergenic 20.0%
!!! TCAAACTTTTGTTAAAATCA+AGG - chr8_2:51007237-51007256 Msa1253520:CDS 20.0%
!! CATATTTATAAGCAAGTTTA+GGG - chr8_2:51008460-51008479 Msa1253520:CDS 20.0%
!! ATATTTATAAGCAAGTTTAG+GGG - chr8_2:51008461-51008480 Msa1253520:CDS 20.0%
!! TATTAAACAAAATCTAGCTA+AGG + chr8_2:51008539-51008558 None:intergenic 20.0%
!!! TTTTGTTTAATAATTCAGGT+TGG - chr8_2:51008547-51008566 Msa1253520:CDS 20.0%
!! TAAGAACAAAAAAACAGAAA+AGG - chr8_2:51008983-51009002 Msa1253520:CDS 20.0%
!!! AAAAAAAAAGTGTATAGTGA+TGG + chr8_2:51009307-51009326 None:intergenic 20.0%
!!! ATAATTTTCATAGAGATTCT+TGG - chr8_2:51009398-51009417 Msa1253520:five_prime_UTR 20.0%
!!! AAAGTTTTTGTTTGATTGGT+TGG + chr8_2:51005553-51005572 None:intergenic 25.0%
!!! TTTTGATTACGATTCGATAT+TGG - chr8_2:51006331-51006350 Msa1253520:CDS 25.0%
! TTTGATTACGATTCGATATT+GGG - chr8_2:51006332-51006351 Msa1253520:CDS 25.0%
! ATATCTATGAAGCACAAATA+CGG + chr8_2:51006972-51006991 None:intergenic 25.0%
!! ACTTTTGGATTTTATCTTGT+AGG - chr8_2:51007006-51007025 Msa1253520:intron 25.0%
! AATAGGATCCAATTTATAGA+GGG - chr8_2:51007464-51007483 Msa1253520:intron 25.0%
!! TTTTCAATTCAACCATAACA+AGG + chr8_2:51007861-51007880 None:intergenic 25.0%
!! TTTTCTACTACATGTATGTT+TGG + chr8_2:51008365-51008384 None:intergenic 25.0%
! GCATATTTATAAGCAAGTTT+AGG - chr8_2:51008459-51008478 Msa1253520:CDS 25.0%
! TAGCTAAGGATACAATAAAA+TGG + chr8_2:51008525-51008544 None:intergenic 25.0%
CAAAAAACGAAGGAGAAAAA+TGG + chr8_2:51005616-51005635 None:intergenic 30.0%
AATGCAGAAACAAAAAACGA+AGG + chr8_2:51005626-51005645 None:intergenic 30.0%
TCGTCGGAAGAAAAAAAAAA+TGG - chr8_2:51005662-51005681 Msa1253520:three_prime_UTR 30.0%
ATAACTGGAAAATCTCTAGA+AGG - chr8_2:51006293-51006312 Msa1253520:CDS 30.0%
TGTAAAGCTATTCATGTTTC+TGG - chr8_2:51006491-51006510 Msa1253520:intron 30.0%
GCAAGTGTATCAAAATTAAG+CGG + chr8_2:51006620-51006639 None:intergenic 30.0%
TTGCGTTATGAGTTATTAGT+AGG - chr8_2:51006712-51006731 Msa1253520:CDS 30.0%
ATGAAACTATGAATGAAGCA+TGG - chr8_2:51006769-51006788 Msa1253520:CDS 30.0%
TCTCAAATTATTAGCAGTGT+CGG - chr8_2:51006917-51006936 Msa1253520:CDS 30.0%
! TGAAATGATTTAGGGACTTT+TGG - chr8_2:51006991-51007010 Msa1253520:intron 30.0%
AATGTTTGTCTTTGATCCAA+TGG - chr8_2:51007102-51007121 Msa1253520:intron 30.0%
AAGAAGAGCGAAAATATGTT+TGG - chr8_2:51007157-51007176 Msa1253520:CDS 30.0%
TATGGAGAGGATCTATAATT+AGG - chr8_2:51007326-51007345 Msa1253520:intron 30.0%
! TTAGTTCTTAGATTAACCTG+AGG - chr8_2:51007392-51007411 Msa1253520:intron 30.0%
!! AAAAGCATTCTATAAACCTC+AGG + chr8_2:51007411-51007430 None:intergenic 30.0%
! TGAGGTTTATAGAATGCTTT+TGG - chr8_2:51007410-51007429 Msa1253520:intron 30.0%
CAATAGGATCCAATTTATAG+AGG - chr8_2:51007463-51007482 Msa1253520:intron 30.0%
!!! TCTGTTTTTAAGAATTACCG+AGG - chr8_2:51007529-51007548 Msa1253520:intron 30.0%
!!! CCATTTTAATTGAACAACCT+CGG + chr8_2:51007549-51007568 None:intergenic 30.0%
CGAGGTTGTTCAATTAAAAT+GGG - chr8_2:51007547-51007566 Msa1253520:intron 30.0%
TTGAAAAAGAAAACCATGCT+CGG + chr8_2:51008420-51008439 None:intergenic 30.0%
TTTAGGGGAGCTAAATTAAA+AGG - chr8_2:51008476-51008495 Msa1253520:CDS 30.0%
TTAGGGGAGCTAAATTAAAA+GGG - chr8_2:51008477-51008496 Msa1253520:CDS 30.0%
!! TCTCAATTTACTTGGTGTTA+AGG - chr8_2:51008612-51008631 Msa1253520:CDS 30.0%
!! CTCAATTTACTTGGTGTTAA+GGG - chr8_2:51008613-51008632 Msa1253520:CDS 30.0%
ACACAACAATAAACTTGTAG+AGG - chr8_2:51008822-51008841 Msa1253520:CDS 30.0%
CACAACAATAAACTTGTAGA+GGG - chr8_2:51008823-51008842 Msa1253520:CDS 30.0%
ACAACAATAAACTTGTAGAG+GGG - chr8_2:51008824-51008843 Msa1253520:CDS 30.0%
!! TTGGTTTTCAAAAGGACTAT+TGG - chr8_2:51008893-51008912 Msa1253520:CDS 30.0%
!!! CATTTTTTTTATTCACCACC+TGG + chr8_2:51008925-51008944 None:intergenic 30.0%
!! ATAAGTGTTGAATCAGAAGA+TGG - chr8_2:51009067-51009086 Msa1253520:CDS 30.0%
AAGAATCAAACTAATGCCAA+AGG + chr8_2:51009111-51009130 None:intergenic 30.0%
GAGTTGTTAATAATAGTCTC+TGG - chr8_2:51009277-51009296 Msa1253520:five_prime_UTR 30.0%
TGTTAATAATAGTCTCTGGT+TGG - chr8_2:51009281-51009300 Msa1253520:five_prime_UTR 30.0%
! TGATTGGTTGGAAAATGAGA+GGG + chr8_2:51005541-51005560 None:intergenic 35.0%
! TTGATTGGTTGGAAAATGAG+AGG + chr8_2:51005542-51005561 None:intergenic 35.0%
TTCGTAGATTCAAAACTCGT+CGG - chr8_2:51005646-51005665 Msa1253520:three_prime_UTR 35.0%
GTTAGTGACACAGAGAAAAA+CGG + chr8_2:51005802-51005821 None:intergenic 35.0%
GAAGAAACCTAGAAGGTAAA+CGG + chr8_2:51005961-51005980 None:intergenic 35.0%
GTTTACCTTCTAGGTTTCTT+CGG - chr8_2:51005960-51005979 Msa1253520:three_prime_UTR 35.0%
TTTAGCGAGAATCTCTTCAT+CGG + chr8_2:51006021-51006040 None:intergenic 35.0%
ACAACTTCATAGATCTTCAC+CGG + chr8_2:51006134-51006153 None:intergenic 35.0%
ATTGCAAAATCAGTTGTCAC+CGG - chr8_2:51006188-51006207 Msa1253520:CDS 35.0%
TCGTAATCAAAACCTTCCAA+CGG + chr8_2:51006323-51006342 None:intergenic 35.0%
GGAATTTGAACAAACCCTAT+CGG + chr8_2:51006374-51006393 None:intergenic 35.0%
! GATAGGGTTTGTTCAAATTC+CGG - chr8_2:51006373-51006392 Msa1253520:intron 35.0%
TTGTTGCAAGTACCAATAGA+GGG - chr8_2:51006468-51006487 Msa1253520:intron 35.0%
! AATAGCTTTACACCCTCTAT+TGG + chr8_2:51006483-51006502 None:intergenic 35.0%
!! AAAGCTATTCATGTTTCTGG+TGG - chr8_2:51006494-51006513 Msa1253520:intron 35.0%
! TCTTCTGTTTTGCTTAGAGA+TGG - chr8_2:51006521-51006540 Msa1253520:intron 35.0%
!! TGCTGAGTTGAAGTTTTTCT+TGG - chr8_2:51006589-51006608 Msa1253520:intron 35.0%
! TCTTGTAGGAAATTAGGTTG+AGG - chr8_2:51007020-51007039 Msa1253520:intron 35.0%
!! CTTGTAGGAAATTAGGTTGA+GGG - chr8_2:51007021-51007040 Msa1253520:intron 35.0%
!! TGAGGGATTTGTTGATTGAA+TGG - chr8_2:51007038-51007057 Msa1253520:intron 35.0%
TGATCCCTTGCAACATTATT+GGG + chr8_2:51007128-51007147 None:intergenic 35.0%
TTGATCCCTTGCAACATTAT+TGG + chr8_2:51007129-51007148 None:intergenic 35.0%
! TTTGGAGCTTCACAAAATCA+TGG + chr8_2:51007216-51007235 None:intergenic 35.0%
AAAACAACTGTTTGTCGAAG+AGG + chr8_2:51007359-51007378 None:intergenic 35.0%
! GGTTTATAGAATGCTTTTGG+CGG - chr8_2:51007413-51007432 Msa1253520:intron 35.0%
ATCCAATTTATAGAGGGATG+AGG - chr8_2:51007470-51007489 Msa1253520:intron 35.0%
CCGAGGTTGTTCAATTAAAA+TGG - chr8_2:51007546-51007565 Msa1253520:intron 35.0%
!! ACAATTTAATGGGTTTGTGC+AGG - chr8_2:51007597-51007616 Msa1253520:intron 35.0%
AAATTCTTGCCAGCAATAGT+AGG + chr8_2:51007656-51007675 None:intergenic 35.0%
CTGGCAAGAATTTGTACATT+AGG - chr8_2:51007663-51007682 Msa1253520:intron 35.0%
! AGTCACTCTGAAGAAAATCA+AGG + chr8_2:51007751-51007770 None:intergenic 35.0%
TCCTAAAACTGTCCTTGTTA+TGG - chr8_2:51007846-51007865 Msa1253520:intron 35.0%
! ACCATAACAAGGACAGTTTT+AGG + chr8_2:51007850-51007869 None:intergenic 35.0%
! AATGTTTTCATGCACACTGT+TGG - chr8_2:51007889-51007908 Msa1253520:intron 35.0%
AACATGCTTAAGAACCTAAC+TGG - chr8_2:51008066-51008085 Msa1253520:intron 35.0%
AATTTCTGTACCTCAATGGA+AGG + chr8_2:51008264-51008283 None:intergenic 35.0%
CACTAATTTCTGTACCTCAA+TGG + chr8_2:51008268-51008287 None:intergenic 35.0%
CATTGAGGTACAGAAATTAG+TGG - chr8_2:51008266-51008285 Msa1253520:intron 35.0%
!! AATAATTCAGGTTGGTACTG+TGG - chr8_2:51008555-51008574 Msa1253520:CDS 35.0%
!! ATAATTCAGGTTGGTACTGT+GGG - chr8_2:51008556-51008575 Msa1253520:CDS 35.0%
TCAGCTTGTCTCAATTTACT+TGG - chr8_2:51008604-51008623 Msa1253520:CDS 35.0%
TGAAATACAACAGATCTAGC+AGG - chr8_2:51008761-51008780 Msa1253520:CDS 35.0%
GAAATACAACAGATCTAGCA+GGG - chr8_2:51008762-51008781 Msa1253520:CDS 35.0%
GTTTATTGTTGTGTTGTGTG+AGG + chr8_2:51008816-51008835 None:intergenic 35.0%
! GTTTTCAAAAGGACTATTGG+TGG - chr8_2:51008896-51008915 Msa1253520:CDS 35.0%
AAAACAAGTGGCTAAACCTT+TGG - chr8_2:51009092-51009111 Msa1253520:CDS 35.0%
!!! TATTTTAGTGTGTCTGTGTG+TGG - chr8_2:51009202-51009221 Msa1253520:CDS 35.0%
!! CAATTCTTGTCTTTTGCTGT+TGG - chr8_2:51009337-51009356 Msa1253520:five_prime_UTR 35.0%
TGTCCAAATACTTTGGATGT+CGG - chr8_2:51009365-51009384 Msa1253520:five_prime_UTR 35.0%
! ATACCGACATCCAAAGTATT+TGG + chr8_2:51009371-51009390 None:intergenic 35.0%
!!! TCTTGGACAAGAGTGTTTTA+AGG - chr8_2:51009415-51009434 Msa1253520:five_prime_UTR 35.0%
!!! CTTGGACAAGAGTGTTTTAA+GGG - chr8_2:51009416-51009435 Msa1253520:five_prime_UTR 35.0%
ATATTAACTAAAACCGGCAC+AGG + chr8_2:51009447-51009466 None:intergenic 35.0%
AAAAAAAAATGGACGCTCGC+CGG - chr8_2:51005673-51005692 Msa1253520:three_prime_UTR 40.0%
GAGGAAGAGATTTAAGTCTC+CGG + chr8_2:51005695-51005714 None:intergenic 40.0%
GTCACTAACGCTGTATTCTT+CGG - chr8_2:51005813-51005832 Msa1253520:three_prime_UTR 40.0%
CTTCTAGGTTTCTTCGGTAT+CGG - chr8_2:51005966-51005985 Msa1253520:three_prime_UTR 40.0%
GATCTATGAAGTTGTTGCAC+CGG - chr8_2:51006139-51006158 Msa1253520:CDS 40.0%
TTTGCAATTTCCTCGTCTTC+CGG + chr8_2:51006176-51006195 None:intergenic 40.0%
! CTGGATTCTAAGGAATACGA+CGG + chr8_2:51006221-51006240 None:intergenic 40.0%
! ATCTCTAGAAGGTTTACCGT+TGG - chr8_2:51006304-51006323 Msa1253520:CDS 40.0%
AGTGTTGTGAAATGCCGATA+GGG - chr8_2:51006357-51006376 Msa1253520:intron 40.0%
CTTGTTGCAAGTACCAATAG+AGG - chr8_2:51006467-51006486 Msa1253520:intron 40.0%
! ACCTGTTGTTAGGTTTTCGT+CGG - chr8_2:51006556-51006575 Msa1253520:intron 40.0%
ATCATGTGTCAGTGTCATGT+CGG + chr8_2:51006848-51006867 None:intergenic 40.0%
ATTGAATGGATCCCTTGCAA+GGG - chr8_2:51007052-51007071 Msa1253520:intron 40.0%
TTGCAACATTATTGGGCCAT+TGG + chr8_2:51007121-51007140 None:intergenic 40.0%
AATGGCCCAATAATGTTGCA+AGG - chr8_2:51007120-51007139 Msa1253520:intron 40.0%
ATGGCCCAATAATGTTGCAA+GGG - chr8_2:51007121-51007140 Msa1253520:intron 40.0%
TAAAGAGGGACAATATGGAG+AGG - chr8_2:51007313-51007332 Msa1253520:intron 40.0%
GACCTCATCCCTCTATAAAT+TGG + chr8_2:51007475-51007494 None:intergenic 40.0%
ATAGAGGGATGAGGTCATAT+AGG - chr8_2:51007479-51007498 Msa1253520:intron 40.0%
AGCATTCAACCTACTATTGC+TGG - chr8_2:51007644-51007663 Msa1253520:intron 40.0%
TTCCAATGACATCCATGTCA+GGG + chr8_2:51007775-51007794 None:intergenic 40.0%
ATTCCAATGACATCCATGTC+AGG + chr8_2:51007776-51007795 None:intergenic 40.0%
ATGGATGTCATTGGAATCTC+AGG - chr8_2:51007779-51007798 Msa1253520:intron 40.0%
! TTTCATGCACACTGTTGGTT+TGG - chr8_2:51007894-51007913 Msa1253520:intron 40.0%
TGAGGCTGTTATTAAGGAAG+AGG - chr8_2:51007996-51008015 Msa1253520:intron 40.0%
!! GAAAGTGTTGAAGACTAGTG+TGG - chr8_2:51008026-51008045 Msa1253520:intron 40.0%
TTCTCACTGTATCACCATGA+TGG - chr8_2:51008194-51008213 Msa1253520:intron 40.0%
GCATAGTGACAGAAATGTGA+AGG + chr8_2:51008242-51008261 None:intergenic 40.0%
ACAGAAATTAGTGGTCCCTT+TGG - chr8_2:51008275-51008294 Msa1253520:CDS 40.0%
! TTTGTCCTTATGAGAGGCAT+TGG + chr8_2:51008851-51008870 None:intergenic 40.0%
!!! GTCGTTTTTGTCCTTATGAG+AGG + chr8_2:51008857-51008876 None:intergenic 40.0%
! AACCAACTGTACGCTCTTTT+TGG + chr8_2:51008879-51008898 None:intergenic 40.0%
!!! GCGTACAGTTGGTTTTCAAA+AGG - chr8_2:51008885-51008904 Msa1253520:CDS 40.0%
TTCAAAAGGACTATTGGTGG+TGG - chr8_2:51008899-51008918 Msa1253520:CDS 40.0%
ACAGAAAAGGTTGCATCTAG+TGG - chr8_2:51008996-51009015 Msa1253520:CDS 40.0%
GTAAACACCTTAGTCCATGT+GGG - chr8_2:51009018-51009037 Msa1253520:CDS 40.0%
CAGAAGATGGAGAAAACAAG+TGG - chr8_2:51009080-51009099 Msa1253520:CDS 40.0%
GGCACTTTGTCCAAATACTT+TGG - chr8_2:51009358-51009377 Msa1253520:five_prime_UTR 40.0%
TTTAAGGGATATTCCTGTGC+CGG - chr8_2:51009431-51009450 Msa1253520:five_prime_UTR 40.0%
TGGTTGGAAAATGAGAGGGA+GGG + chr8_2:51005537-51005556 None:intergenic 45.0%
TTGGTTGGAAAATGAGAGGG+AGG + chr8_2:51005538-51005557 None:intergenic 45.0%
GAAGCGAAAAACGAGGGAAA+GGG + chr8_2:51005581-51005600 None:intergenic 45.0%
AGAAGCGAAAAACGAGGGAA+AGG + chr8_2:51005582-51005601 None:intergenic 45.0%
!! TTTCCCTCGTTTTTCGCTTC+TGG - chr8_2:51005581-51005600 Msa1253520:three_prime_UTR 45.0%
!! TTCCCTCGTTTTTCGCTTCT+GGG - chr8_2:51005582-51005601 Msa1253520:three_prime_UTR 45.0%
AACCCAGAAGCGAAAAACGA+GGG + chr8_2:51005587-51005606 None:intergenic 45.0%
AAACCCAGAAGCGAAAAACG+AGG + chr8_2:51005588-51005607 None:intergenic 45.0%
! TGGTAAGCTTCTGGGTTTTG+AGG + chr8_2:51005743-51005762 None:intergenic 45.0%
GTGACACAGAGAAAAACGGT+CGG + chr8_2:51005798-51005817 None:intergenic 45.0%
CATGAAGAGGAGTTTCCGTA+CGG + chr8_2:51005890-51005909 None:intergenic 45.0%
! TATAAGAGAAACGATGGCGG+CGG + chr8_2:51005931-51005950 None:intergenic 45.0%
GGCTATAAGAGAAACGATGG+CGG + chr8_2:51005934-51005953 None:intergenic 45.0%
GGAGGCTATAAGAGAAACGA+TGG + chr8_2:51005937-51005956 None:intergenic 45.0%
GAAACCTAGAAGGTAAACGG+CGG + chr8_2:51005958-51005977 None:intergenic 45.0%
CGATACCGAAGAAACCTAGA+AGG + chr8_2:51005968-51005987 None:intergenic 45.0%
TCTTCATCGGAGAGATCATC+CGG + chr8_2:51006008-51006027 None:intergenic 45.0%
AAAGAAGACTCGCGAAAACC+AGG - chr8_2:51006038-51006057 Msa1253520:three_prime_UTR 45.0%
ACAATTGGAGTTACCGTTGC+CGG + chr8_2:51006107-51006126 None:intergenic 45.0%
GGTAACTCCAATTGTAGCTC+CGG - chr8_2:51006112-51006131 Msa1253520:exon 45.0%
ATCTTCACCGGAGCTACAAT+TGG + chr8_2:51006122-51006141 None:intergenic 45.0%
! TCTTCCGGTGTTAGATTCAC+CGG + chr8_2:51006161-51006180 None:intergenic 45.0%
GGAATACGACGGAATTGAAC+CGG + chr8_2:51006210-51006229 None:intergenic 45.0%
! GTCTGCTAGTCTGGATTCTA+AGG + chr8_2:51006231-51006250 None:intergenic 45.0%
CTAGAAGGTTTACCGTTGGA+AGG - chr8_2:51006308-51006327 Msa1253520:CDS 45.0%
CAGTGTTGTGAAATGCCGAT+AGG - chr8_2:51006356-51006375 Msa1253520:intron 45.0%
! GGGTTTGTTCAAATTCCGGT+TGG - chr8_2:51006377-51006396 Msa1253520:intron 45.0%
!! TCAAATTCCGGTTGGTGTTG+CGG - chr8_2:51006385-51006404 Msa1253520:intron 45.0%
TCAACTCCATCCAACAACAG+TGG + chr8_2:51006413-51006432 None:intergenic 45.0%
! TGACTAGAGCACCTGTTGTT+AGG - chr8_2:51006546-51006565 Msa1253520:intron 45.0%
ATGAAGCATGGACACTCCTT+AGG - chr8_2:51006781-51006800 Msa1253520:CDS 45.0%
TCCTTAGGTTAGGCGTGTTA+TGG - chr8_2:51006796-51006815 Msa1253520:CDS 45.0%
ACCATAACACGCCTAACCTA+AGG + chr8_2:51006800-51006819 None:intergenic 45.0%
TACGGACACTGGACACAATA+TGG + chr8_2:51006954-51006973 None:intergenic 45.0%
TGAAGCACAAATACGGACAC+TGG + chr8_2:51006965-51006984 None:intergenic 45.0%
GATTGAATGGATCCCTTGCA+AGG - chr8_2:51007051-51007070 Msa1253520:intron 45.0%
GTTTGGATTGATCGCGAGTT+TGG - chr8_2:51007174-51007193 Msa1253520:CDS 45.0%
TCTCACTGCCATTCCAAACA+TGG - chr8_2:51007282-51007301 Msa1253520:CDS 45.0%
TGCCATTCCAAACATGGAGA+GGG - chr8_2:51007288-51007307 Msa1253520:CDS 45.0%
CTTTATCCCCTCTCCATGTT+TGG + chr8_2:51007298-51007317 None:intergenic 45.0%
AACATGGAGAGGGGATAAAG+AGG - chr8_2:51007298-51007317 Msa1253520:intron 45.0%
ACATGGAGAGGGGATAAAGA+GGG - chr8_2:51007299-51007318 Msa1253520:intron 45.0%
GGGGATAAAGAGGGACAATA+TGG - chr8_2:51007308-51007327 Msa1253520:intron 45.0%
! TAGAATGCTTTTGGCGGTTG+TGG - chr8_2:51007419-51007438 Msa1253520:intron 45.0%
TTGCGGATGAAGAGGTCAAT+AGG - chr8_2:51007447-51007466 Msa1253520:intron 45.0%
ATTAGGTTCCGTTGCAGTAC+AGG - chr8_2:51007680-51007699 Msa1253520:intron 45.0%
! GGGATGAACATGGTGTCAAA+AGG - chr8_2:51007713-51007732 Msa1253520:intron 45.0%
TTCCCTGACATGGATGTCAT+TGG - chr8_2:51007770-51007789 Msa1253520:intron 45.0%
!! GCACACTGTTGGTTTGGTTA+TGG - chr8_2:51007900-51007919 Msa1253520:intron 45.0%
!! ACTGTTGGTTTGGTTATGGC+AGG - chr8_2:51007904-51007923 Msa1253520:intron 45.0%
CGGCTGTAAACTGGATTGAA+GGG - chr8_2:51007953-51007972 Msa1253520:intron 45.0%
GGTGTGTGAGGCTGTTATTA+AGG - chr8_2:51007990-51008009 Msa1253520:intron 45.0%
GGCTGTTATTAAGGAAGAGG+TGG - chr8_2:51007999-51008018 Msa1253520:intron 45.0%
! AGTGTTGAAGACTAGTGTGG+AGG - chr8_2:51008029-51008048 Msa1253520:intron 45.0%
GAACTCTCAACATTCTGAGC+AGG + chr8_2:51008177-51008196 None:intergenic 45.0%
ATCATTCACGGGTTCCATCA+TGG + chr8_2:51008211-51008230 None:intergenic 45.0%
! ATGATGGAACCCGTGAATGA+TGG - chr8_2:51008210-51008229 Msa1253520:intron 45.0%
AAGGTCCTTGCCATCATTCA+CGG + chr8_2:51008223-51008242 None:intergenic 45.0%
TGTCACTATGCCTTCCATTG+AGG - chr8_2:51008251-51008270 Msa1253520:intron 45.0%
AGAAAACCATGCTCGGTAGT+TGG + chr8_2:51008413-51008432 None:intergenic 45.0%
AATCTCCAGGTGCAAATGCT+AGG - chr8_2:51008647-51008666 Msa1253520:CDS 45.0%
AATAGCCTAGCATTTGCACC+TGG + chr8_2:51008655-51008674 None:intergenic 45.0%
AGGTGCAAATGCTAGGCTAT+TGG - chr8_2:51008654-51008673 Msa1253520:CDS 45.0%
! GCAAGCTCACGAAACGATTT+TGG + chr8_2:51008794-51008813 None:intergenic 45.0%
! GACCAAAAAGAGCGTACAGT+TGG - chr8_2:51008874-51008893 Msa1253520:CDS 45.0%
GGTAAACACCTTAGTCCATG+TGG - chr8_2:51009017-51009036 Msa1253520:CDS 45.0%
AAAAGACAATGCCTCCCACA+TGG + chr8_2:51009035-51009054 None:intergenic 45.0%
GAGAGGGAGGGAGGAAAAAT+TGG + chr8_2:51005525-51005544 None:intergenic 50.0%
TTGGAAAATGAGAGGGAGGG+AGG + chr8_2:51005534-51005553 None:intergenic 50.0%
! TGAAGTGAGGTTTTCTCCGG+TGG + chr8_2:51005775-51005794 None:intergenic 50.0%
! CGGTGAAGTGAGGTTTTCTC+CGG + chr8_2:51005778-51005797 None:intergenic 50.0%
GAAAAACGGTCGGTGAAGTG+AGG + chr8_2:51005788-51005807 None:intergenic 50.0%
GTGGAGGAGAAAATACGCGA+CGG + chr8_2:51005850-51005869 None:intergenic 50.0%
! CGTATTTTCTCCTCCACCGT+TGG - chr8_2:51005853-51005872 Msa1253520:three_prime_UTR 50.0%
TACGGATCTTCTCACGCCAA+CGG + chr8_2:51005872-51005891 None:intergenic 50.0%
TTGGCGTGAGAAGATCCGTA+CGG - chr8_2:51005872-51005891 Msa1253520:three_prime_UTR 50.0%
GAGACTGTGACGACATGAAG+AGG + chr8_2:51005903-51005922 None:intergenic 50.0%
CTTCATCGGAGAGATCATCC+GGG + chr8_2:51006007-51006026 None:intergenic 50.0%
! TGCACCGGTGAATCTAACAC+CGG - chr8_2:51006154-51006173 Msa1253520:CDS 50.0%
GAATCTAACACCGGAAGACG+AGG - chr8_2:51006163-51006182 Msa1253520:CDS 50.0%
TTTACGGCAGTCTGCTAGTC+TGG + chr8_2:51006240-51006259 None:intergenic 50.0%
! GACGTATTGCCGCTGCTTTA+CGG + chr8_2:51006256-51006275 None:intergenic 50.0%
TCAGCGGTGCAAACGATAAC+TGG - chr8_2:51006278-51006297 Msa1253520:CDS 50.0%
!! CAAATTCCGGTTGGTGTTGC+GGG - chr8_2:51006386-51006405 Msa1253520:intron 50.0%
AGTTGAGTACACTGTGCCCA+TGG - chr8_2:51006427-51006446 Msa1253520:intron 50.0%
TGCAACAAGACACCCTTCAG+TGG + chr8_2:51006456-51006475 None:intergenic 50.0%
GCCGACGAAAACCTAACAAC+AGG + chr8_2:51006560-51006579 None:intergenic 50.0%
GCATGGACACTCCTTAGGTT+AGG - chr8_2:51006786-51006805 Msa1253520:CDS 50.0%
TCGCGAGTTTGGCTAAGTCA+TGG - chr8_2:51007185-51007204 Msa1253520:CDS 50.0%
CTGCCATTCCAAACATGGAG+AGG - chr8_2:51007287-51007306 Msa1253520:CDS 50.0%
GCCATTCCAAACATGGAGAG+GGG - chr8_2:51007289-51007308 Msa1253520:CDS 50.0%
TCCCCTCTCCATGTTTGGAA+TGG + chr8_2:51007293-51007312 None:intergenic 50.0%
TGGAGTAGTTGCGGATGAAG+AGG - chr8_2:51007439-51007458 Msa1253520:intron 50.0%
TGGCATCACCTGTACTGCAA+CGG + chr8_2:51007691-51007710 None:intergenic 50.0%
TTGCAGTACAGGTGATGCCA+TGG - chr8_2:51007691-51007710 Msa1253520:intron 50.0%
TGCAGTACAGGTGATGCCAT+GGG - chr8_2:51007692-51007711 Msa1253520:intron 50.0%
TGATGCCATGGGGATGAACA+TGG - chr8_2:51007703-51007722 Msa1253520:intron 50.0%
TGACACCATGTTCATCCCCA+TGG + chr8_2:51007711-51007730 None:intergenic 50.0%
TCAGAGTGACTTCCCTGACA+TGG - chr8_2:51007760-51007779 Msa1253520:intron 50.0%
CTGTTCCGACAAGAAAGCAG+CGG - chr8_2:51007933-51007952 Msa1253520:intron 50.0%
! TACAGCCGCTGCTTTCTTGT+CGG + chr8_2:51007941-51007960 None:intergenic 50.0%
AGAAAGCAGCGGCTGTAAAC+TGG - chr8_2:51007944-51007963 Msa1253520:intron 50.0%
GCGGCTGTAAACTGGATTGA+AGG - chr8_2:51007952-51007971 Msa1253520:intron 50.0%
GTAAACTGGATTGAAGGGCG+TGG - chr8_2:51007958-51007977 Msa1253520:intron 50.0%
TGGTAAGTCTGTGGTGTGTG+AGG - chr8_2:51007978-51007997 Msa1253520:intron 50.0%
TCTGCTGTCTACATAGCCAC+TGG - chr8_2:51008144-51008163 Msa1253520:intron 50.0%
TGTCTACATAGCCACTGGTC+AGG - chr8_2:51008149-51008168 Msa1253520:intron 50.0%
AGGTCCTTGCCATCATTCAC+GGG + chr8_2:51008222-51008241 None:intergenic 50.0%
CTACAACCAACTACCGAGCA+TGG - chr8_2:51008404-51008423 Msa1253520:CDS 50.0%
!! ATTCAGGTTGGTACTGTGGG+AGG - chr8_2:51008559-51008578 Msa1253520:CDS 50.0%
!! TTCAGGTTGGTACTGTGGGA+GGG - chr8_2:51008560-51008579 Msa1253520:CDS 50.0%
CTATTGGCCACCATTGTTGC+CGG - chr8_2:51008670-51008689 Msa1253520:CDS 50.0%
TACTGAACCGGCAACAATGG+TGG + chr8_2:51008680-51008699 None:intergenic 50.0%
!! GAGTACTGAACCGGCAACAA+TGG + chr8_2:51008683-51008702 None:intergenic 50.0%
CTCATGTCTGCAATTGCAGC+TGG - chr8_2:51008718-51008737 Msa1253520:CDS 50.0%
AACACCTTAGTCCATGTGGG+AGG - chr8_2:51009021-51009040 Msa1253520:CDS 50.0%
! AATGCCTCCCACATGGACTA+AGG + chr8_2:51009028-51009047 None:intergenic 50.0%
!!! GGTTTTGAGGTTTTCGCCGC+CGG + chr8_2:51005730-51005749 None:intergenic 55.0%
!! GGTGGTGGTGGTAAGCTTCT+GGG + chr8_2:51005751-51005770 None:intergenic 55.0%
!! TGGTGGTGGTGGTAAGCTTC+TGG + chr8_2:51005752-51005771 None:intergenic 55.0%
! AGTGAGGTTTTCTCCGGTGG+TGG + chr8_2:51005772-51005791 None:intergenic 55.0%
ACCTAGAAGGTAAACGGCGG+AGG + chr8_2:51005955-51005974 None:intergenic 55.0%
CGGATCACGAACTTCCTTCC+CGG - chr8_2:51005986-51006005 Msa1253520:three_prime_UTR 55.0%
ATCGGAGAGATCATCCGGGA+AGG + chr8_2:51006003-51006022 None:intergenic 55.0%
! TCGACAAGTGCTGCTGGACA+CGG + chr8_2:51006065-51006084 None:intergenic 55.0%
CACCGACGTAAAACCACCAC+CGG - chr8_2:51006085-51006104 Msa1253520:three_prime_UTR 55.0%
!! TGCCGGTGGTGGTTTTACGT+CGG + chr8_2:51006090-51006109 None:intergenic 55.0%
CGTAAAACCACCACCGGCAA+CGG - chr8_2:51006091-51006110 Msa1253520:three_prime_UTR 55.0%
ATTGGAGTTACCGTTGCCGG+TGG + chr8_2:51006104-51006123 None:intergenic 55.0%
AGCAGACTGCCGTAAAGCAG+CGG - chr8_2:51006244-51006263 Msa1253520:CDS 55.0%
AGCGGCAATACGTCGTTCAG+CGG - chr8_2:51006262-51006281 Msa1253520:CDS 55.0%
TGTTGCGGGTCCACTGTTGT+TGG - chr8_2:51006400-51006419 Msa1253520:intron 55.0%
TGCCCATGGCTACCACTGAA+GGG - chr8_2:51006441-51006460 Msa1253520:intron 55.0%
CACCCTTCAGTGGTAGCCAT+GGG + chr8_2:51006446-51006465 None:intergenic 55.0%
ACACCCTTCAGTGGTAGCCA+TGG + chr8_2:51006447-51006466 None:intergenic 55.0%
CAGTCCTGCAACCCTTGCAA+GGG + chr8_2:51007066-51007085 None:intergenic 55.0%
ACAGTCCTGCAACCCTTGCA+AGG + chr8_2:51007067-51007086 None:intergenic 55.0%
TGCAAGGGTTGCAGGACTGT+TGG - chr8_2:51007067-51007086 Msa1253520:intron 55.0%
TGGCGGTTGTGGAGTAGTTG+CGG - chr8_2:51007430-51007449 Msa1253520:intron 55.0%
GCAGTACAGGTGATGCCATG+GGG - chr8_2:51007693-51007712 Msa1253520:intron 55.0%
! TGAAGGGCGTGGTAAGTCTG+TGG - chr8_2:51007969-51007988 Msa1253520:intron 55.0%
CAGCAAGGGCTGATCCAGTT+AGG + chr8_2:51008083-51008102 None:intergenic 55.0%
CTAACTGGATCAGCCCTTGC+TGG - chr8_2:51008081-51008100 Msa1253520:intron 55.0%
GGAACCCGTGAATGATGGCA+AGG - chr8_2:51008215-51008234 Msa1253520:intron 55.0%
!! TCAGGTTGGTACTGTGGGAG+GGG - chr8_2:51008561-51008580 Msa1253520:CDS 55.0%
TGCACCTGGAGATTCTGTGC+TGG + chr8_2:51008641-51008660 None:intergenic 55.0%
!! TGTTGCCGGTTCAGTACTCG+CGG - chr8_2:51008684-51008703 Msa1253520:CDS 55.0%
GGGGACCAATGCCTCTCATA+AGG - chr8_2:51008843-51008862 Msa1253520:CDS 55.0%
!! AAGGACTATTGGTGGTGGCC+AGG - chr8_2:51008904-51008923 Msa1253520:CDS 55.0%
CTTCCTCCACGTTCTCCCAC+CGG - chr8_2:51005708-51005727 Msa1253520:three_prime_UTR 60.0%
! TTGAGGTTTTCGCCGCCGGT+GGG + chr8_2:51005726-51005745 None:intergenic 60.0%
!! TTTGAGGTTTTCGCCGCCGG+TGG + chr8_2:51005727-51005746 None:intergenic 60.0%
CTTACCACCACCACCACCAC+CGG - chr8_2:51005756-51005775 Msa1253520:three_prime_UTR 60.0%
!!! GTTTTCTCCGGTGGTGGTGG+TGG + chr8_2:51005766-51005785 None:intergenic 60.0%
!! GAGGTTTTCTCCGGTGGTGG+TGG + chr8_2:51005769-51005788 None:intergenic 60.0%
TCTTCTCACGCCAACGGTGG+AGG + chr8_2:51005866-51005885 None:intergenic 60.0%
GGATCTTCTCACGCCAACGG+TGG + chr8_2:51005869-51005888 None:intergenic 60.0%
GCCTCCGCCGTTTACCTTCT+AGG - chr8_2:51005951-51005970 Msa1253520:three_prime_UTR 60.0%
!! TCGGTGTCGACAAGTGCTGC+TGG + chr8_2:51006071-51006090 None:intergenic 60.0%
AGTGGACCCGCAACACCAAC+CGG + chr8_2:51006395-51006414 None:intergenic 60.0%
GCGGGTCCACTGTTGTTGGA+TGG - chr8_2:51006404-51006423 Msa1253520:intron 60.0%
GTGCCCATGGCTACCACTGA+AGG - chr8_2:51006440-51006459 Msa1253520:intron 60.0%
GGATCCCTTGCAAGGGTTGC+AGG - chr8_2:51007059-51007078 Msa1253520:intron 60.0%
TCAGCCCTTGCTGGTGCTCT+TGG - chr8_2:51008090-51008109 Msa1253520:intron 60.0%
!! CCCACCAAGAGCACCAGCAA+GGG + chr8_2:51008097-51008116 None:intergenic 60.0%
CCCTTGCTGGTGCTCTTGGT+GGG - chr8_2:51008094-51008113 Msa1253520:intron 60.0%
!! ACCCACCAAGAGCACCAGCA+AGG + chr8_2:51008098-51008117 None:intergenic 60.0%
CTGAGCAGGATCCTGACCAG+TGG + chr8_2:51008163-51008182 None:intergenic 60.0%
!! CAGGTTGGTACTGTGGGAGG+GGG - chr8_2:51008562-51008581 Msa1253520:CDS 60.0%
!! GTTGCCGGTTCAGTACTCGC+GGG - chr8_2:51008685-51008704 Msa1253520:CDS 60.0%
!! GACTATTGGTGGTGGCCAGG+TGG - chr8_2:51008907-51008926 Msa1253520:CDS 60.0%
!! TTCTCCGGTGGTGGTGGTGG+TGG + chr8_2:51005763-51005782 None:intergenic 65.0%
! AGTGCTGCTGGACACGGTCC+TGG + chr8_2:51006059-51006078 None:intergenic 65.0%
GGAGTTACCGTTGCCGGTGG+TGG + chr8_2:51006101-51006120 None:intergenic 65.0%
GCCCTTGCTGGTGCTCTTGG+TGG - chr8_2:51008093-51008112 Msa1253520:intron 65.0%
GGCGCCAGCACAGAATCTCC+AGG - chr8_2:51008634-51008653 Msa1253520:CDS 65.0%
!! CTCGCCCGCGAGTACTGAAC+CGG + chr8_2:51008692-51008711 None:intergenic 65.0%
CCTCCACGTTCTCCCACCGG+CGG - chr8_2:51005711-51005730 Msa1253520:three_prime_UTR 70.0%
CCGCCGGTGGGAGAACGTGG+AGG + chr8_2:51005714-51005733 None:intergenic 75.0%
TCGCCGCCGGTGGGAGAACG+TGG + chr8_2:51005717-51005736 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 51005444 51009485 51005444 ID=Msa1253520;Name=Msa1253520
chr8_2 mRNA 51005444 51009485 51005444 ID=Msa1253520-mRNA-1;Parent=Msa1253520;Name=Msa1253520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=237|1|1|1|1|1|4|678|581
chr8_2 exon 51005444 51006364 51005444 ID=Msa1253520-mRNA-1:exon:15617;Parent=Msa1253520-mRNA-1
chr8_2 exon 51006657 51007003 51006657 ID=Msa1253520-mRNA-1:exon:15616;Parent=Msa1253520-mRNA-1
chr8_2 exon 51007129 51007310 51007129 ID=Msa1253520-mRNA-1:exon:15615;Parent=Msa1253520-mRNA-1
chr8_2 exon 51008275 51009485 51008275 ID=Msa1253520-mRNA-1:exon:15614;Parent=Msa1253520-mRNA-1
chr8_2 five_prime_UTR 51009249 51009485 51009249 ID=Msa1253520-mRNA-1:five_prime_utr;Parent=Msa1253520-mRNA-1
chr8_2 CDS 51008275 51009248 51008275 ID=Msa1253520-mRNA-1:cds;Parent=Msa1253520-mRNA-1
chr8_2 CDS 51007129 51007310 51007129 ID=Msa1253520-mRNA-1:cds;Parent=Msa1253520-mRNA-1
chr8_2 CDS 51006657 51007003 51006657 ID=Msa1253520-mRNA-1:cds;Parent=Msa1253520-mRNA-1
chr8_2 CDS 51006122 51006364 51006122 ID=Msa1253520-mRNA-1:cds;Parent=Msa1253520-mRNA-1
chr8_2 three_prime_UTR 51005444 51006121 51005444 ID=Msa1253520-mRNA-1:three_prime_utr;Parent=Msa1253520-mRNA-1
Gene Sequence

>Msa1253520

ATGGACGCTCGCCGGAGACTTAAATCTCTTCCTCCACGTTCTCCCACCGGCGGCGAAAACCTCAAAACCCAGAAGCTTACCACCACCACCACCACCGGAGAAAACCTCACTTCACCGACCGTTTTTCTCTGTGTCACTAACGCTGTATTCTTCGGTGTTTTCTTCTCCGTCGCGTATTTTCTCCTCCACCGTTGGCGTGAGAAGATCCGTACGGAAACTCCTCTTCATGTCGTCACAGTCTCTGAAACCGCCGCCATCGTTTCTCTTATAGCCTCCGCCGTTTACCTTCTAGGTTTCTTCGGTATCGGATCACGAACTTCCTTCCCGGATGATCTCTCCGATGAAGAGATTCTCGCTAAAGAAGACTCGCGAAAACCAGGACCGTGTCCAGCAGCACTTGTCGACACCGACGTAAAACCACCACCGGCAACGGTAACTCCAATTGTAGCTCCGGTGAAGATCTATGAAGTTGTTGCACCGGTGAATCTAACACCGGAAGACGAGGAAATTGCAAAATCAGTTGTCACCGGTTCAATTCCGTCGTATTCCTTAGAATCCAGACTAGCAGACTGCCGTAAAGCAGCGGCAATACGTCGTTCAGCGGTGCAAACGATAACTGGAAAATCTCTAGAAGGTTTACCGTTGGAAGGTTTTGATTACGATTCGATATTGGGACAGTGTTGTGAAATGCCGATAGGGTTTGTTCAAATTCCGGTTGGTGTTGCGGGTCCACTGTTGTTGGATGGAGTTGAGTACACTGTGCCCATGGCTACCACTGAAGGGTGTCTTGTTGCAAGTACCAATAGAGGGTGTAAAGCTATTCATGTTTCTGGTGGAGCTTCTTCTGTTTTGCTTAGAGATGGAATGACTAGAGCACCTGTTGTTAGGTTTTCGTCGGCGAAAAGAGCTGCTGAGTTGAAGTTTTTCTTGGAAGATCCGCTTAATTTTGATACACTTGCTGTCACTTTCAACAAGTCAAGCAGATTTGCTAGATTGCAGAGCATTCAACCTACTATTGCTGGCAAGAATTTGTACATTAGGTTCCGTTGCAGTACAGGTGATGCCATGGGGATGAACATGGTGTCAAAAGGTGTTCAAAATGTCCTTGATTTTCTTCAGAGTGACTTCCCTGACATGGATGTCATTGGAATCTCAGGAAATTTCTGTTCCGACAAGAAAGCAGCGGCTGTAAACTGGATTGAAGGGCGTGGTAAGTCTGTGGTGTGTGAGGCTGTTATTAAGGAAGAGGTGGTGAAGAAAGTGTTGAAGACTAGTGTGGAGGCACTAGTTGAGCTTAACATGCTTAAGAACCTAACTGGATCAGCCCTTGCTGGTGCTCTTGGTGGGTTCAATGCTCATGCTAGCAATATTGTCTCTGCTGTCTACATAGCCACTGGTCAGGATCCTGCTCAGAATGTTGAGAGTTCTCACTGTATCACCATGATGGAACCCGTGAATGATGGCAAGGACCTTCACATTTCTGTCACTATGCCTTCCATTGAGGTTGGTACTGTGGGAGGGGGAACACAACTTGCATCTCAGTCAGCTTGTCTCAATTTACTTGGTGTTAAGGGCGCCAGCACAGAATCTCCAGGTGCAAATGCTAGGCTATTGGCCACCATTGTTGCCGGTTCAGTACTCGCGGGCGAGCTATCACTCATGTCTGCAATTGCAGCTGGACAACTAGTTAAGAGTCACATGAAATACAACAGATCTAGCAGGGATATGTCCAAAATCGTTTCGTGA
Protein sequence

>Msa1253520

MDARRRLKSLPPRSPTGGENLKTQKLTTTTTTGENLTSPTVFLCVTNAVFFGVFFSVAYFLLHRWREKIRTETPLHVVTVSETAAIVSLIASAVYLLGFFGIGSRTSFPDDLSDEEILAKEDSRKPGPCPAALVDTDVKPPPATVTPIVAPVKIYEVVAPVNLTPEDEEIAKSVVTGSIPSYSLESRLADCRKAAAIRRSAVQTITGKSLEGLPLEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGVEYTVPMATTEGCLVASTNRGCKAIHVSGGASSVLLRDGMTRAPVVRFSSAKRAAELKFFLEDPLNFDTLAVTFNKSSRFARLQSIQPTIAGKNLYIRFRCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVEALVELNMLKNLTGSALAGALGGFNAHASNIVSAVYIATGQDPAQNVESSHCITMMEPVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASTESPGANARLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRDMSKIVS*