AlfalfaGEDB | Msa1132850

M. sativa cultivar zhongmu-4 / Msa1132850

KEGG: K09553
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031072 GO:0034622 GO:0043933 GO:0044085 GO:0051131 GO:0051879 GO:0065003 GO:0070678 GO:0071840
PFAM: PF13414.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132850	XP_003611260.1	97.938	582	11	1	1	582	1	581	0.0	1177

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132850	sp\|Q43468\|HSOP1_SOYBN	75.763	590	117	5	1	582	1	572	0.0	889

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132850	G7KG90	97.938	582	11	1	1	582	1	581	0.0	1177

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013270	Msa1132850	0.809855	1.539144e-50	-8.615850e-47
Msa0036810	Msa1132850	0.801159	1.027047e-48	-8.615850e-47
Msa0051910	Msa1132850	0.829039	6.434764e-55	-8.615850e-47
Msa0101530	Msa1132850	0.812655	3.801696e-51	-8.615850e-47
Msa0120860	Msa1132850	0.808060	3.728274e-50	-8.615850e-47
Msa0121470	Msa1132850	0.808483	3.029537e-50	-8.615850e-47
Msa0121490	Msa1132850	0.803805	2.925296e-49	-8.615850e-47
Msa0125860	Msa1132850	0.817500	3.192965e-52	-8.615850e-47
Msa0132080	Msa1132850	-0.803201	3.903012e-49	-8.615850e-47
Msa0140870	Msa1132850	-0.802078	6.655096e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132850	MtrunA17_Chr5g0398901	97.938	582	11	1	1	582	1	581	0.0	1177
Msa1132850	MtrunA17_Chr5g0398951	81.319	91	16	1	242	332	4	93	4.94e-42	146
Msa1132850	MtrunA17_Chr3g0097231	31.651	218	119	6	2	199	11	218	1.07e-19	92.4
Msa1132850	MtrunA17_Chr3g0097231	32.759	116	78	0	393	508	11	126	4.11e-13	72.0
Msa1132850	MtrunA17_Chr1g0166441	36.441	118	75	0	397	514	15	132	3.99e-19	89.0
Msa1132850	MtrunA17_Chr1g0166441	35.354	99	64	0	6	104	15	113	1.12e-13	72.4
Msa1132850	MtrunA17_Chr7g0274241	39.655	116	70	0	2	117	335	450	6.72e-17	83.6
Msa1132850	MtrunA17_Chr7g0274241	34.211	114	75	0	393	506	335	448	1.24e-16	82.8
Msa1132850	MtrunA17_Chr1g0160051	36.937	111	69	1	1	110	180	290	1.77e-16	82.4
Msa1132850	MtrunA17_Chr1g0160051	31.092	119	81	1	385	502	173	291	2.58e-12	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132850	AT1G62740.1	73.639	588	132	4	1	582	1	571	0.0	882
Msa1132850	AT4G12400.2	72.213	583	136	4	1	582	1	558	0.0	882
Msa1132850	AT1G12270.1	73.424	587	136	6	1	582	1	572	0.0	848
Msa1132850	AT4G12400.1	71.481	547	130	4	1	546	1	522	0.0	819
Msa1132850	AT4G12400.1	32.258	186	125	1	392	576	1	186	5.26e-22	100
Msa1132850	AT1G04190.1	40.816	98	58	0	6	103	19	116	7.95e-18	85.5
Msa1132850	AT1G04190.1	39.623	106	64	0	397	502	19	124	1.35e-17	84.7
Msa1132850	AT4G08320.1	31.361	169	112	3	1	168	174	339	4.74e-17	84.3
Msa1132850	AT4G08320.1	33.094	139	86	3	372	508	158	291	8.14e-14	74.3
Msa1132850	AT4G08320.2	37.069	116	72	1	1	115	174	289	9.89e-17	83.2

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Find 224 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAACCGCACCCTTC+CGG	0.339040	7_3:+85689324	None:intergenic
AAAAGCATCACCAAACGGAT+TGG	0.541023	7_3:+85692393	None:intergenic
AAACTGAACCGCACCCTTCC+GGG	0.362337	7_3:+85689325	None:intergenic
AAAGGCTTTGGAAACATACC+AGG	0.604647	7_3:-85689285	Msa1132850:CDS
AAATACAAATTCAAATTATT+GGG	0.271371	7_3:+85692268	None:intergenic
AAATTAATAGAACCAGTCGT+GGG	0.560810	7_3:-85689101	Msa1132850:CDS
AACAACCAGGAATTGCTTGA+AGG	0.509120	7_3:-85689242	Msa1132850:CDS
AAGAGCCGATAGAGAGAGAG+TGG	0.517520	7_3:+85692924	None:intergenic
AAGCAAACCTGTCTCATAAC+AGG	0.314328	7_3:+85688913	None:intergenic
AATAATGAACCCTTGAAATC+AGG	0.348019	7_3:-85692478	Msa1132850:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAACTAGAGAGTTCTACTA+GGG	+	chr7_3:85687987-85688006	None:intergenic	30.0%
ATAGGAAGAAGAAGAAGAAA+GGG	+	chr7_3:85688116-85688135	None:intergenic	30.0%
GATTTCAAGGGTTCATTATT+AGG	+	chr7_3:85688483-85688502	None:intergenic	30.0%
AATAATGAACCCTTGAAATC+AGG	-	chr7_3:85688483-85688502	Msa1132850:three_prime_UTR	30.0%
GATGATGCAAGATATTCAAA+AGG	-	chr7_3:85688668-85688687	Msa1132850:three_prime_UTR	30.0%
CTTAATGTTAAGATTGGAAG+AGG	-	chr7_3:85688753-85688772	Msa1132850:CDS	30.0%
AATTCAATGGAATTCTCATG+GGG	+	chr7_3:85689450-85689469	None:intergenic	30.0%
CAATTCAATGGAATTCTCAT+GGG	+	chr7_3:85689451-85689470	None:intergenic	30.0%
TCAATTCAATGGAATTCTCA+TGG	+	chr7_3:85689452-85689471	None:intergenic	30.0%
GTATATGAACCAAATTGAGA+AGG	-	chr7_3:85689483-85689502	Msa1132850:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	85687968	85693015	85687968	ID=Msa1132850;Name=Msa1132850
chr7_3	mRNA	85687968	85693015	85687968	ID=Msa1132850-mRNA-1;Parent=Msa1132850;Name=Msa1132850-mRNA-1;_AED=0.04;_eAED=0.04;_QI=212\|1\|1\|1\|1\|1\|7\|752\|582
chr7_3	exon	85687968	85688833	85687968	ID=Msa1132850-mRNA-1:exon:25764;Parent=Msa1132850-mRNA-1
chr7_3	exon	85688921	85688980	85688921	ID=Msa1132850-mRNA-1:exon:25763;Parent=Msa1132850-mRNA-1
chr7_3	exon	85689068	85689134	85689068	ID=Msa1132850-mRNA-1:exon:25762;Parent=Msa1132850-mRNA-1
chr7_3	exon	85689233	85689456	85689233	ID=Msa1132850-mRNA-1:exon:25761;Parent=Msa1132850-mRNA-1
chr7_3	exon	85689540	85689625	85689540	ID=Msa1132850-mRNA-1:exon:25760;Parent=Msa1132850-mRNA-1
chr7_3	exon	85689762	85690050	85689762	ID=Msa1132850-mRNA-1:exon:25759;Parent=Msa1132850-mRNA-1
chr7_3	exon	85691895	85693015	85691895	ID=Msa1132850-mRNA-1:exon:25758;Parent=Msa1132850-mRNA-1
chr7_3	five_prime_UTR	85692804	85693015	85692804	ID=Msa1132850-mRNA-1:five_prime_utr;Parent=Msa1132850-mRNA-1
chr7_3	CDS	85691895	85692803	85691895	ID=Msa1132850-mRNA-1:cds;Parent=Msa1132850-mRNA-1
chr7_3	CDS	85689762	85690050	85689762	ID=Msa1132850-mRNA-1:cds;Parent=Msa1132850-mRNA-1
chr7_3	CDS	85689540	85689625	85689540	ID=Msa1132850-mRNA-1:cds;Parent=Msa1132850-mRNA-1
chr7_3	CDS	85689233	85689456	85689233	ID=Msa1132850-mRNA-1:cds;Parent=Msa1132850-mRNA-1
chr7_3	CDS	85689068	85689134	85689068	ID=Msa1132850-mRNA-1:cds;Parent=Msa1132850-mRNA-1
chr7_3	CDS	85688921	85688980	85688921	ID=Msa1132850-mRNA-1:cds;Parent=Msa1132850-mRNA-1
chr7_3	CDS	85688720	85688833	85688720	ID=Msa1132850-mRNA-1:cds;Parent=Msa1132850-mRNA-1
chr7_3	three_prime_UTR	85687968	85688719	85687968	ID=Msa1132850-mRNA-1:three_prime_utr;Parent=Msa1132850-mRNA-1

Gene Sequence

>Msa1132850

ATGGCCGACGAAGCTAAAGCCAAAGGCAACGCTGCATTCTCCTCCGGCGATTTCGCAACCGCCATCCGTCACTTCTCAGATGCCATCAATCTTTCCCCCACCAACCACGTCCTGTATTCCAACCGATCCGCTGCTCACGCTTCTCTCCAGAATTACACTGACGCTTTAACCGATGCAAAGAAAACCGTCGAACTCAAACCTGATTGGTCAAAGGGTTACAGCCGTCTCGGTGCCGCTCATCTTGGTCTTTCTCAATACGACGAAGCTGTTTCAGCTTACAAGAAAGGGTTAGAAATTGATCCTAATAATGAACCCTTGAAATCAGGTTTAGCCGATGCTCAAAAAGCCGCGGCGGCGAGTTTTTCTAGGCCACGTTCTGCGCCGGGTGCCAATCCGTTTGGTGATGCTTTTTCTGGACCGGAGATGTGGGCGAAACTTACTGCTGATCCTACAACTAGGGTTTATCTTCAACAGCCTGATTTTGTGAAGATGATGCAAGATATTCAAAAGGATCCCAATAATTTGAATTTGTATTTGAAGGATCAGAGAGTTATGCAAGCTTTTGGGGTTTTGCTTAATGTTAAGATTGGAAGAGGTGGTGATGATGTGGATATGCCTGATATGCCGTCCAGTTCGGAGAGGAAGAGAGCTGCTGAACCTGAGGTGGCAAAGCAGGCGGAGGTTGAGCCTGAGCCGGAACCGGAGCCAATGGAGGAGGTGGCTGATGAGGAGAAGGAAGTGAAGCAGAGGAAGGCTGAGGCGCAGAAGGAGAAGGAGGCTGGTAATGCTGCGTATAAGAAGAAGGATTTTGATACTGCGATTCTGCATTATTCGAAAGCTTTGGAATTGGATGATGAGGATGTTTCCTTCCTCACTAACCGTGCTGCTGTATACTTGGAAATGGGAAAGTATGAGGATTGCATAAAAGATTGTGATAAGGCTGTTGAAAGAGGACGAGAGCTAAGAGCAGACTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAACTGCCATGGGTAAAACGGCAAAATGCTCTAAAGATTATGAACCTGTCATTGAGACTTACCAAAAAGCGCTTACAGAGCACCGTAACCCAGACACCCTGAAGAAACTCAATGAAGCTGAGAAGGCCAAGAAAGAACTAGAACAACAAGAATACTTCGATCCAAATTTGGCTGATGAGGAGAGAGAAAAAGGGAATGAATACTTTAAGCAGCAGAAGTATCCTGAAGCTATTAAGCATTACACAGAGTCTATAAAAAGAAACCCGAAAAATCCTAAGGCTTATAGTAACAGAGCTGCATGTTACACAAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGTATTGAGCTTGACCCGACCTTCACCAAGGGTTATACCCGGAAGGGTGCGGTTCAGTTTTTCATGAAAGAATATGAAAAGGCTTTGGAAACATACCAGGAAGGGTTGAAACATGATGCAAACAACCAGGAATTGCTTGAAGGGGTTCGAAGTTGTGTGAAGCAAATTAATAGAACCAGTCGTGGGGATGTAACTCCTGAAGAGTTGAAGGAGAGACAGGCTAAGGCAATGCAAGATCCAGAGATTCAGAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCAAAGGCTGCACAGGAACATACCAAGAACCCGGGTGTGATGGACAAGATCCAAAAGCTGATCAGTGCCGGAATTGTCCAGATGAAGTAA

Protein sequence

>Msa1132850

MADEAKAKGNAAFSSGDFATAIRHFSDAINLSPTNHVLYSNRSAAHASLQNYTDALTDAKKTVELKPDWSKGYSRLGAAHLGLSQYDEAVSAYKKGLEIDPNNEPLKSGLADAQKAAAASFSRPRSAPGANPFGDAFSGPEMWAKLTADPTTRVYLQQPDFVKMMQDIQKDPNNLNLYLKDQRVMQAFGVLLNVKIGRGGDDVDMPDMPSSSERKRAAEPEVAKQAEVEPEPEPEPMEEVADEEKEVKQRKAEAQKEKEAGNAAYKKKDFDTAILHYSKALELDDEDVSFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRADYKMIARALTRKGTAMGKTAKCSKDYEPVIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPNLADEEREKGNEYFKQQKYPEAIKHYTESIKRNPKNPKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQFFMKEYEKALETYQEGLKHDANNQELLEGVRSCVKQINRTSRGDVTPEELKERQAKAMQDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPGVMDKIQKLISAGIVQMK*