AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1156730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156730 MtrunA17_Chr7g0250371 93.684 285 18 0 1 285 503 787 0.0 548
Msa1156730 MtrunA17_Chr7g0250391 91.579 285 24 0 1 285 501 785 4.53e-179 513
Msa1156730 MtrunA17_Chr7g0250441 84.912 285 43 0 1 285 1 285 2.01e-172 479
Msa1156730 MtrunA17_Chr7g0250411 83.860 285 46 0 1 285 502 786 2.13e-172 496
Msa1156730 MtrunA17_Chr7g0250331 84.266 286 44 1 1 285 524 809 9.63e-171 492
Msa1156730 MtrunA17_Chr7g0250481 81.404 285 53 0 1 285 516 800 1.79e-166 481
Msa1156730 MtrunA17_Chr5g0439271 65.018 283 95 4 1 282 322 601 1.40e-122 362
Msa1156730 MtrunA17_Chr7g0261701 57.509 273 108 7 11 282 24 289 5.20e-98 289
Msa1156730 MtrunA17_Chr4g0057461 55.556 279 118 6 1 276 346 621 4.11e-97 298
Msa1156730 MtrunA17_Chr3g0120521 53.650 274 122 5 11 283 501 770 4.48e-96 299
Msa1156730 MtrunA17_Chr5g0447171 48.438 320 107 6 12 285 203 510 4.35e-94 286
Msa1156730 MtrunA17_Chr4g0076611 57.143 273 109 7 11 282 428 693 1.72e-93 290
Msa1156730 MtrunA17_Chr4g0057491 51.049 286 134 6 1 283 340 622 9.67e-92 284
Msa1156730 MtrunA17_Chr4g0057471 53.287 289 121 8 1 282 427 708 3.09e-91 285
Msa1156730 MtrunA17_Chr4g0057481 52.098 286 131 6 1 283 408 690 1.44e-90 283
Msa1156730 MtrunA17_Chr4g0057531 51.399 286 133 6 1 283 495 777 4.37e-90 283
Msa1156730 MtrunA17_Chr5g0423261 51.049 286 134 6 1 283 340 622 1.06e-89 278
Msa1156730 MtrunA17_Chr4g0057511 51.049 286 134 6 1 283 334 616 1.30e-89 278
Msa1156730 MtrunA17_Chr5g0401511 47.735 287 140 6 6 285 480 763 3.78e-80 257
Msa1156730 MtrunA17_Chr4g0020651 47.735 287 140 6 6 285 476 759 1.31e-78 253
Msa1156730 MtrunA17_Chr4g0053781 47.183 284 140 6 6 282 474 754 2.60e-78 252
Msa1156730 MtrunA17_Chr3g0134621 46.875 288 137 6 6 280 449 733 2.26e-76 246
Msa1156730 MtrunA17_Chr8g0345971 45.517 290 147 6 1 282 472 758 2.80e-76 246
Msa1156730 MtrunA17_Chr2g0303881 46.367 289 144 6 1 282 441 725 3.27e-75 243
Msa1156730 MtrunA17_Chr5g0407701 48.252 286 132 8 1 283 478 750 6.77e-75 243
Msa1156730 MtrunA17_Chr1g0189251 44.027 293 146 7 1 282 468 753 2.92e-74 241
Msa1156730 MtrunA17_Chr4g0037221 45.296 287 146 5 6 282 482 767 4.15e-74 241
Msa1156730 MtrunA17_Chr1g0204321 46.290 283 143 6 6 282 497 776 6.85e-74 241
Msa1156730 MtrunA17_Chr4g0070391 47.018 285 135 8 6 280 471 749 6.73e-73 238
Msa1156730 MtrunA17_Chr2g0300751 43.860 285 154 5 1 280 487 770 1.94e-72 237
Msa1156730 MtrunA17_Chr8g0369891 45.230 283 139 4 3 283 485 753 1.33e-71 234
Msa1156730 MtrunA17_Chr7g0246461 47.387 287 136 10 6 282 458 739 1.70e-70 231
Msa1156730 MtrunA17_Chr8g0345981 43.729 295 145 8 1 282 471 757 4.76e-70 230
Msa1156730 MtrunA17_Chr4g0026641 47.331 281 137 9 6 282 480 753 6.64e-68 224
Msa1156730 MtrunA17_Chr8g0344331 45.105 286 141 7 9 283 495 775 1.80e-67 223
Msa1156730 MtrunA17_Chr1g0152771 43.000 300 146 8 3 280 464 760 3.52e-67 223
Msa1156730 MtrunA17_Chr8g0345991 43.253 289 145 8 6 282 472 753 4.39e-67 222
Msa1156730 MtrunA17_Chr7g0276151 45.361 291 147 7 1 282 468 755 4.85e-67 222
Msa1156730 MtrunA17_Chr8g0346361 41.115 287 151 8 5 284 223 498 1.01e-66 216
Msa1156730 MtrunA17_Chr1g0146251 45.878 279 130 8 13 283 470 735 4.35e-66 219
Msa1156730 MtrunA17_Chr2g0285121 45.993 287 139 7 4 282 504 782 5.01e-66 219
Msa1156730 MtrunA17_Chr2g0285111 45.296 287 141 7 4 282 507 785 1.39e-64 216
Msa1156730 MtrunA17_Chr4g0057061 46.127 284 135 10 6 282 502 774 1.49e-64 216
Msa1156730 MtrunA17_Chr1g0146271 44.444 279 134 8 13 283 468 733 1.33e-63 212
Msa1156730 MtrunA17_Chr7g0262161 44.138 290 145 9 6 282 475 760 1.44e-63 213
Msa1156730 MtrunA17_Chr8g0377961 42.857 287 149 7 1 283 500 775 1.68e-63 213
Msa1156730 MtrunA17_Chr8g0334521 41.786 280 143 9 13 284 468 735 2.62e-63 211
Msa1156730 MtrunA17_Chr1g0170081 43.165 278 139 9 13 283 466 731 2.29e-62 209
Msa1156730 MtrunA17_Chr7g0248871 43.103 290 146 9 5 282 481 763 5.95e-62 208
Msa1156730 MtrunA17_Chr5g0398351 44.755 286 141 9 6 285 1233 1507 9.74e-62 211
Msa1156730 MtrunA17_Chr5g0398351 44.406 286 142 9 6 285 462 736 9.93e-62 211
Msa1156730 MtrunA17_Chr8g0344971 43.116 276 143 8 19 282 486 759 1.13e-61 207
Msa1156730 MtrunA17_Chr5g0398241 45.230 283 138 9 6 282 482 753 1.26e-61 207
Msa1156730 MtrunA17_Chr7g0227991 42.349 281 142 9 13 285 468 736 1.59e-61 207
Msa1156730 MtrunA17_Chr5g0398401 44.755 286 141 9 6 285 482 756 1.97e-61 207
Msa1156730 MtrunA17_Chr8g0351011 45.357 280 131 10 12 282 485 751 1.99e-61 207
Msa1156730 MtrunA17_Chr7g0266051 42.254 284 143 8 10 284 436 707 2.63e-61 206
Msa1156730 MtrunA17_Chr3g0136151 42.756 283 149 9 6 279 480 758 5.44e-61 206
Msa1156730 MtrunA17_Chr4g0026661 44.922 256 130 9 32 283 12 260 5.84e-61 194
Msa1156730 MtrunA17_Chr3g0105451 41.696 283 140 9 6 279 9 275 6.28e-61 194
Msa1156730 MtrunA17_Chr3g0143251 41.958 286 152 9 6 282 484 764 7.99e-61 205
Msa1156730 MtrunA17_Chr8g0354741 42.086 278 150 8 11 283 363 634 1.05e-60 203
Msa1156730 MtrunA17_Chr2g0301031 43.846 260 125 9 32 283 1 247 2.43e-60 192
Msa1156730 MtrunA17_Chr5g0398331 43.110 283 144 9 6 282 479 750 2.49e-60 204
Msa1156730 MtrunA17_Chr6g0470851 40.767 287 149 9 7 284 457 731 1.80e-59 201
Msa1156730 MtrunA17_Chr7g0246451 42.500 280 142 9 13 284 479 747 3.44e-59 201
Msa1156730 MtrunA17_Chr6g0470881 42.160 287 145 9 7 284 457 731 7.78e-59 199
Msa1156730 MtrunA17_Chr2g0312861 42.912 261 128 9 32 284 1 248 1.35e-58 189
Msa1156730 MtrunA17_Chr8g0354771 41.727 278 154 6 11 283 490 764 1.64e-58 199
Msa1156730 MtrunA17_Chr8g0345961 41.379 290 158 6 1 282 471 756 1.97e-58 199
Msa1156730 MtrunA17_Chr1g0189561 41.319 288 157 8 5 282 475 760 3.81e-57 195
Msa1156730 MtrunA17_Chr8g0334491 41.489 282 131 10 13 283 470 728 4.76e-57 194
Msa1156730 MtrunA17_Chr5g0398311 41.319 288 142 10 6 282 475 746 3.00e-56 192
Msa1156730 MtrunA17_Chr6g0480721 41.727 278 139 9 13 282 337 599 1.07e-55 189
Msa1156730 MtrunA17_Chr3g0079971 38.983 295 151 12 1 283 455 732 1.27e-51 180
Msa1156730 MtrunA17_Chr4g0071871 40.484 289 147 10 10 283 536 814 5.80e-48 170
Msa1156730 MtrunA17_Chr2g0301921 41.743 218 107 8 74 283 1 206 6.28e-46 153
Msa1156730 MtrunA17_Chr2g0298601 40.210 286 144 12 11 280 537 811 1.24e-43 158
Msa1156730 MtrunA17_Chr2g0301011 47.273 165 78 3 7 171 326 481 5.76e-43 153
Msa1156730 MtrunA17_Chr8g0380961 38.832 291 148 11 13 285 570 848 6.58e-42 153
Msa1156730 MtrunA17_Chr3g0103081 50.000 146 69 4 141 284 1 144 5.84e-41 139
Msa1156730 MtrunA17_Chr2g0302951 38.095 294 147 13 13 285 562 841 1.28e-37 141
Msa1156730 MtrunA17_Chr7g0248861 48.571 140 71 1 5 143 483 622 3.50e-36 137
Msa1156730 MtrunA17_Chr4g0071191 39.320 206 107 7 13 212 57 250 2.98e-35 127
Msa1156730 MtrunA17_Chr5g0418921 48.889 135 67 2 1 134 1 134 4.06e-34 122
Msa1156730 MtrunA17_Chr4g0075331 33.099 284 165 11 13 282 465 737 7.21e-33 127
Msa1156730 MtrunA17_Chr8g0376841 55.208 96 42 1 12 107 489 583 1.48e-29 117
Msa1156730 MtrunA17_Chr4g0035881 50.467 107 50 1 2 105 211 317 1.64e-28 111
Msa1156730 MtrunA17_Chr3g0097061 47.222 108 49 2 65 172 331 430 2.53e-26 107
Msa1156730 MtrunA17_Chr8g0376851 40.491 163 87 6 128 282 11 171 8.00e-25 97.8
Msa1156730 MtrunA17_Chr5g0436031 35.882 170 96 7 121 282 16 180 9.57e-24 96.3
Msa1156730 MtrunA17_Chr3g0143231 53.191 94 36 2 15 105 1 89 3.04e-22 88.6
Msa1156730 MtrunA17_Chr7g0248851 38.255 149 82 7 141 282 1 146 1.18e-19 83.6
Msa1156730 MtrunA17_Chr3g0142971 50.000 90 37 2 15 101 1 85 6.18e-19 79.7
Msa1156730 MtrunA17_Chr5g0398341 50.000 90 44 1 74 163 1 89 4.27e-18 77.8
Msa1156730 MtrunA17_Chr3g0103071 62.295 61 23 0 1 61 213 273 2.30e-16 77.4
Msa1156730 MtrunA17_Chr3g0142961 37.037 135 75 6 115 240 4 137 4.68e-16 73.6
Msa1156730 MtrunA17_Chr3g0077671 48.649 74 37 1 63 135 235 308 3.93e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156730 AT2G04160.1 55.789 285 121 5 1 283 490 771 1.71e-97 303
Msa1156730 AT5G59810.1 55.273 275 116 6 11 283 506 775 4.03e-95 297
Msa1156730 AT5G67360.1 49.123 285 141 3 1 282 471 754 9.78e-86 272
Msa1156730 AT2G05920.1 48.387 279 139 4 6 280 470 747 5.23e-80 257
Msa1156730 AT5G45650.2 47.059 289 133 8 4 282 510 788 3.18e-74 242
Msa1156730 AT5G45650.1 47.059 289 133 8 4 282 510 788 3.18e-74 242
Msa1156730 AT5G51750.1 45.775 284 144 6 6 282 494 774 1.52e-70 232
Msa1156730 AT4G26330.2 45.645 287 145 7 4 282 438 721 5.06e-69 227
Msa1156730 AT4G26330.1 45.645 287 145 7 4 282 452 735 6.19e-69 227
Msa1156730 AT3G14240.1 44.637 289 146 8 6 282 483 769 2.36e-68 226
Msa1156730 AT4G34980.1 44.983 289 145 9 6 282 472 758 1.12e-67 224
Msa1156730 AT1G20160.2 44.876 283 142 8 12 285 448 725 1.15e-66 221
Msa1156730 AT1G20160.1 44.876 283 142 8 12 285 487 764 1.83e-66 221
Msa1156730 AT1G32970.1 46.479 284 139 6 5 285 452 725 2.85e-66 220
Msa1156730 AT3G14067.1 42.807 285 148 8 12 283 486 768 1.21e-65 219
Msa1156730 AT4G10520.1 44.444 288 147 5 1 285 470 747 2.11e-65 218
Msa1156730 AT5G11940.1 45.172 290 144 8 1 285 476 755 2.59e-65 218
Msa1156730 AT4G00230.1 45.161 279 134 8 12 282 476 743 6.99e-65 216
Msa1156730 AT4G21640.1 45.804 286 143 5 1 283 452 728 2.85e-63 212
Msa1156730 AT4G21630.1 45.455 286 144 5 1 283 478 754 1.66e-62 210
Msa1156730 AT5G58840.1 45.161 279 136 8 11 282 438 706 1.69e-62 209
Msa1156730 AT1G01900.1 47.586 290 134 11 6 282 487 771 1.73e-62 210
Msa1156730 AT4G10550.4 43.706 286 145 7 4 285 440 713 7.02e-62 208
Msa1156730 AT4G10550.2 43.706 286 145 7 4 285 440 713 7.02e-62 208
Msa1156730 AT5G59120.1 42.349 281 141 7 11 282 459 727 8.97e-62 207
Msa1156730 AT4G10550.1 43.706 286 145 7 4 285 496 769 1.24e-61 208
Msa1156730 AT1G04110.1 42.466 292 152 9 6 285 486 773 1.66e-61 207
Msa1156730 AT4G10550.3 43.706 286 145 7 4 285 512 785 2.01e-61 207
Msa1156730 AT4G10510.2 43.158 285 149 6 4 285 423 697 2.63e-61 206
Msa1156730 AT4G10510.4 43.158 285 149 6 4 285 438 712 2.65e-61 206
Msa1156730 AT5G03620.1 42.905 296 142 10 5 284 476 760 3.80e-61 206
Msa1156730 AT4G10510.1 43.158 285 149 6 4 285 482 756 4.90e-61 206
Msa1156730 AT4G10510.3 43.158 285 149 6 4 285 494 768 5.56e-61 206
Msa1156730 AT5G59100.1 45.520 279 133 9 13 282 469 737 9.26e-61 205
Msa1156730 AT4G21650.1 43.357 286 150 5 1 283 485 761 1.27e-60 205
Msa1156730 AT1G66220.1 43.599 289 141 8 1 285 477 747 1.41e-60 205
Msa1156730 AT1G32950.2 42.308 286 150 6 4 285 439 713 2.13e-60 204
Msa1156730 AT4G10540.1 42.807 285 150 6 4 285 492 766 2.25e-60 204
Msa1156730 AT5G58820.1 45.324 278 135 9 11 282 434 700 2.28e-60 203
Msa1156730 AT1G32950.1 42.308 286 150 6 4 285 490 764 3.52e-60 204
Msa1156730 AT5G59090.1 40.830 289 149 8 3 282 453 728 4.74e-60 203
Msa1156730 AT5G59090.3 40.830 289 149 8 3 282 451 726 5.02e-60 203
Msa1156730 AT5G59190.1 44.203 276 137 7 11 280 422 686 5.24e-60 202
Msa1156730 AT5G58830.1 42.857 280 137 9 13 282 439 705 9.64e-60 202
Msa1156730 AT5G59130.3 45.126 277 132 9 13 282 423 686 1.97e-59 201
Msa1156730 AT5G59130.2 44.803 279 134 9 11 282 450 715 2.98e-59 201
Msa1156730 AT5G59130.1 44.803 279 134 9 11 282 456 721 3.34e-59 201
Msa1156730 AT5G59130.4 44.803 279 134 9 11 282 460 725 4.30e-59 201
Msa1156730 AT1G32940.4 42.807 285 150 5 4 285 440 714 4.42e-59 200
Msa1156730 AT1G32940.2 42.807 285 150 5 4 285 440 714 4.42e-59 200
Msa1156730 AT5G59090.2 41.034 290 142 9 3 282 453 723 6.29e-59 200
Msa1156730 AT1G32940.1 42.807 285 150 5 4 285 491 765 9.66e-59 200
Msa1156730 AT1G66210.1 44.483 290 140 10 1 285 480 753 9.90e-59 200
Msa1156730 AT1G32960.1 40.625 288 158 5 1 285 491 768 3.93e-58 198
Msa1156730 AT3G46850.1 43.554 287 142 9 3 282 461 734 5.28e-58 197
Msa1156730 AT5G45640.1 40.878 296 125 8 6 282 487 751 5.75e-57 195
Msa1156730 AT3G46840.1 43.403 288 141 11 3 282 461 734 6.39e-56 192
Msa1156730 AT4G21326.1 42.456 285 153 5 1 283 413 688 4.91e-55 189
Msa1156730 AT4G10530.1 40.972 288 144 7 1 285 474 738 4.50e-54 187
Msa1156730 AT1G20150.1 40.000 290 157 8 9 285 488 773 1.28e-52 183
Msa1156730 AT4G21323.1 41.034 290 155 8 1 285 518 796 2.30e-52 183
Msa1156730 AT4G15040.2 42.806 278 139 8 13 282 420 685 4.33e-51 178
Msa1156730 AT4G15040.1 42.806 278 139 8 13 282 420 685 4.33e-51 178
Msa1156730 AT2G39850.1 38.983 295 136 13 14 282 489 765 3.34e-46 166
Msa1156730 AT1G32980.1 48.128 187 93 4 70 253 3 188 2.17e-45 152
Msa1156730 AT2G19170.1 38.356 292 144 13 10 280 532 808 2.60e-44 160
Msa1156730 AT2G19170.2 38.356 292 144 13 10 280 532 808 2.60e-44 160
Msa1156730 AT4G30020.3 38.328 287 151 12 10 280 533 809 1.09e-43 159
Msa1156730 AT4G30020.1 38.328 287 151 12 10 280 533 809 1.09e-43 159
Msa1156730 AT4G30020.4 38.328 287 151 12 10 280 533 809 1.09e-43 159
Msa1156730 AT4G30020.2 38.328 287 151 12 10 280 533 809 1.09e-43 159
Msa1156730 AT5G67090.1 37.993 279 136 11 5 271 462 715 2.95e-43 157
Msa1156730 AT4G20430.2 36.860 293 151 13 13 285 549 827 6.00e-36 136
Msa1156730 AT4G20430.3 36.860 293 151 13 13 285 573 851 7.20e-36 136
Msa1156730 AT4G20430.1 36.860 293 151 13 13 285 573 851 7.20e-36 136
Msa1156730 AT1G62340.1 32.746 284 168 9 13 283 557 830 6.78e-35 133
Msa1156730 AT1G30600.1 33.010 309 171 13 2 285 532 829 4.23e-33 128
Msa1156730 AT5G44530.1 35.374 294 154 13 13 285 558 836 6.59e-33 128
Msa1156730 AT5G03620.2 57.843 102 42 1 5 106 476 576 5.77e-31 121
Msa1156730 AT5G58840.3 60.417 96 37 1 11 106 438 532 3.02e-29 116
Msa1156730 AT5G44530.2 32.602 319 154 14 13 285 558 861 3.85e-28 114
Msa1156730 AT4G00230.2 53.608 97 44 1 12 108 476 571 9.55e-28 112
Msa1156730 AT5G59110.1 40.123 162 86 8 130 282 7 166 5.11e-24 95.9
Msa1156730 AT1G32940.3 51.923 104 42 1 4 107 491 586 7.59e-21 92.8

Find 187 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCTCATTATGATTTAT+TGG 0.141553 7_4:-45185655 Msa1156730:five_prime_UTR
AAAATGCAGTACAAAGTTTA+TGG 0.162792 7_4:+45179598 None:intergenic
AGGATTTAATGTGTTATTAT+TGG 0.177450 7_4:-45179768 Msa1156730:three_prime_UTR
TCAAAACACTTCATCCTAAT+TGG 0.179111 7_4:-45180806 Msa1156730:CDS
TGAACTCTATCTCTTGAATT+AGG 0.241513 7_4:-45186165 Msa1156730:five_prime_UTR
GTACCAGGTGCAAGCATATT+TGG 0.243200 7_4:-45182523 Msa1156730:five_prime_UTR
GTGTCGTAATAATTGATATA+TGG 0.252733 7_4:-45179652 Msa1156730:three_prime_UTR
TTTGAAGGATCAAGTGTTCT+TGG 0.260632 7_4:+45181790 None:intergenic
TCCATCGCAGTTCTCCAAAT+TGG 0.263907 7_4:+45179842 None:intergenic
CCAGCAGATCCATTTGCTTA+TGG 0.280964 7_4:-45180258 Msa1156730:CDS
CTCAAGACTAATTTATTCTT+AGG 0.281895 7_4:+45186080 None:intergenic
TGTTTATGATCTAAGCATTA+AGG 0.283802 7_4:-45180193 Msa1156730:CDS
CAAAGAAAGTTCCATGTAAC+AGG 0.287724 7_4:-45183308 Msa1156730:intron
GGAAATCAACCAAAAGTTAA+TGG 0.289464 7_4:-45181667 Msa1156730:five_prime_UTR
ACACGTTCATGGGAATTTCT+TGG 0.289833 7_4:-45185280 Msa1156730:five_prime_UTR
TCTTCTCATTATGATTTATT+GGG 0.293779 7_4:-45185654 Msa1156730:five_prime_UTR
ATAGCTGCTGGACTCCAATT+AGG 0.295517 7_4:+45180792 None:intergenic
CATTTGCGCCGAACAGTAAC+AGG 0.295750 7_4:+45179793 None:intergenic
CCTCATGTTGCTGGCACTGC+TGG 0.296064 7_4:-45180834 Msa1156730:CDS
AATATATGACTACGTATAAA+TGG 0.296531 7_4:+45181441 None:intergenic
ATTGGCAATGGTACCATAAA+AGG 0.300546 7_4:-45182499 Msa1156730:five_prime_UTR
TCCTTGAATTTCAAGAAAAT+AGG 0.302304 7_4:-45179925 Msa1156730:CDS
GATCCATTTGCTTATGGTTC+AGG 0.307657 7_4:-45180252 Msa1156730:CDS
TCAATCACATTACCAAATCT+TGG 0.318748 7_4:-45180054 Msa1156730:CDS
ATGTCTTGCCCTCATGTTGC+TGG 0.319115 7_4:-45180843 Msa1156730:CDS
ACAGATGTCGCTAGTTGTTT+TGG 0.328182 7_4:-45182427 Msa1156730:five_prime_UTR
ATACATATCAGGAAGCTAAT+TGG 0.329867 7_4:-45182667 Msa1156730:intron
GTTTGTTTGGATTAGGTGTT+TGG 0.335121 7_4:-45183425 Msa1156730:intron
ATTCACTCAATAACAGAAAC+TGG 0.336460 7_4:-45179522 Msa1156730:three_prime_UTR
CCAAATTGGTATTTCCTCCT+TGG 0.339017 7_4:+45179856 None:intergenic
AACATGACATTTACTTGTTC+AGG 0.339929 7_4:-45180108 Msa1156730:CDS
TAGAGACCAACACACTTTGT+AGG 0.341452 7_4:+45182450 None:intergenic
TTTACTGATGAGGTTTCAAT+AGG 0.355204 7_4:-45182304 Msa1156730:five_prime_UTR
AGGTGCAAAGGGAGTGATAT+TGG 0.356470 7_4:-45181689 Msa1156730:five_prime_UTR
AAGATGATGAGGACACAAAA+TGG 0.356526 7_4:+45185930 None:intergenic
AATAATACCTTGAGTATATA+AGG 0.359023 7_4:+45181282 None:intergenic
AAGCCGATACGCGATGCTTT+CGG 0.359804 7_4:-45180288 Msa1156730:CDS
ATAGCATTCAACCCAAGATT+TGG 0.361663 7_4:+45180042 None:intergenic
TGTTGTTAATGTTGCTCCTT+GGG 0.363780 7_4:-45182209 Msa1156730:five_prime_UTR
GTTTAGAATTTGTACTAGAT+TGG 0.364133 7_4:+45182332 None:intergenic
AGAAACTGGAATACTACATA+TGG 0.368466 7_4:-45179508 Msa1156730:three_prime_UTR
TCATGTTCATGCCAGCAAAA+AGG 0.372835 7_4:-45185869 Msa1156730:intron
ATATAAGGTTGAACTTGATT+AGG 0.376059 7_4:+45181297 None:intergenic
AGTGTTCTCCCATTAACTTT+TGG 0.389948 7_4:+45181658 None:intergenic
GATGCTTATGAGCGATATAA+TGG 0.393967 7_4:-45182628 Msa1156730:five_prime_UTR
GCAACATTAACAACACTTCC+AGG 0.398380 7_4:+45182217 None:intergenic
TGTATCAATGTTAGCTATGA+TGG 0.401090 7_4:+45185201 None:intergenic
TATATAATGAATGACACATA+TGG 0.403309 7_4:+45186045 None:intergenic
TGATTTATTGGGCTCAGTCT+TGG 0.403680 7_4:-45185643 Msa1156730:five_prime_UTR
CCAAGGAGGAAATACCAATT+TGG 0.404190 7_4:-45179856 Msa1156730:CDS
GATGAGAATGAAGCCATAAC+TGG 0.405810 7_4:+45181327 None:intergenic
GATATAATTTCTGTTTCTGC+TGG 0.405924 7_4:-45182358 Msa1156730:five_prime_UTR
TTAAACTTCTTATGTGCCTC+TGG 0.407958 7_4:-45180165 Msa1156730:CDS
CAATCACATTACCAAATCTT+GGG 0.408831 7_4:-45180053 Msa1156730:CDS
TAGGACAAATTCCAGCAAAA+TGG 0.412456 7_4:-45183371 Msa1156730:five_prime_UTR
ACAGTGTTACATTGTATACT+TGG 0.416051 7_4:-45185730 Msa1156730:intron
GCTTGGCAAAAGGGAAGGTT+TGG 0.418165 7_4:-45185232 Msa1156730:five_prime_UTR
AACTGCACACAACACGTTCA+TGG 0.423791 7_4:-45185291 Msa1156730:five_prime_UTR
CCATAAGCAAATGGATCTGC+TGG 0.426262 7_4:+45180258 None:intergenic
AAAATCAGTTGCAGAGGGTC+AGG 0.427586 7_4:-45181725 Msa1156730:five_prime_UTR
GATTTATTGGGCTCAGTCTT+GGG 0.428465 7_4:-45185642 Msa1156730:five_prime_UTR
CTTTGCAGCTATACTTGAAA+AGG 0.430907 7_4:-45185489 Msa1156730:five_prime_UTR
GGTGCAAAGGGAGTGATATT+GGG 0.431223 7_4:-45181688 Msa1156730:five_prime_UTR
TAGGTTGCAACTCTAGCTCT+TGG 0.432129 7_4:+45182469 None:intergenic
TATCTAGTTTAAGTGATGAA+TGG 0.435486 7_4:-45179559 Msa1156730:three_prime_UTR
GAAATCAACCAAAAGTTAAT+GGG 0.436950 7_4:-45181666 Msa1156730:five_prime_UTR
TTTGCTAAAGCTCAATTGCC+TGG 0.440503 7_4:-45179973 Msa1156730:CDS
CCAGGATCCATTGCACTGTT+GGG 0.442368 7_4:+45180219 None:intergenic
GGTGCAAGCATATTTGGTAT+TGG 0.445201 7_4:-45182517 Msa1156730:five_prime_UTR
ATATTATTAGTTGCATCTGC+TGG 0.445882 7_4:-45182256 Msa1156730:five_prime_UTR
TTCTTGAAATTCAAGGAACT+TGG 0.447012 7_4:+45179931 None:intergenic
CGTACAGCACGTGACTTTGT+AGG 0.450585 7_4:-45182586 Msa1156730:five_prime_UTR
CCCAACAGTGCAATGGATCC+TGG 0.452923 7_4:-45180219 Msa1156730:CDS
CAAATGGAAAACACATTGTA+AGG 0.453162 7_4:-45179819 Msa1156730:CDS
TCCAGGATCCATTGCACTGT+TGG 0.456255 7_4:+45180218 None:intergenic
CAGCCTGATGTAACTGCGCC+TGG 0.463185 7_4:-45180966 Msa1156730:CDS
GTGTTGTTAATGTTGCTCCT+TGG 0.466589 7_4:-45182210 Msa1156730:five_prime_UTR
GAGAAGATGTAGCAGTTTCA+AGG 0.469008 7_4:+45185670 None:intergenic
TGTCGTAATAATTGATATAT+GGG 0.469284 7_4:-45179651 Msa1156730:three_prime_UTR
GCTTTAGCAAAATATGTACT+TGG 0.472138 7_4:+45179985 None:intergenic
AATCAACTCAGCTTGGCAAA+AGG 0.474287 7_4:-45185242 Msa1156730:five_prime_UTR
GAAAATAAAATCAGTTGCAG+AGG 0.475707 7_4:-45181731 Msa1156730:five_prime_UTR
ATCATAGCTAACATTGATAC+AGG 0.482003 7_4:-45185199 Msa1156730:intron
GAAACTGGAATACTACATAT+GGG 0.485402 7_4:-45179507 Msa1156730:three_prime_UTR
GGAGAACTGCGATGGACAAA+TGG 0.485717 7_4:-45179835 Msa1156730:CDS
GAGTCCAGCAGCTATTAAAT+CGG 0.488824 7_4:-45180784 Msa1156730:CDS
GTTTCAAGGTCAACAGAAGA+AGG 0.490160 7_4:+45185684 None:intergenic
TAAGGAGTCCTGTTACTGTT+CGG 0.491957 7_4:-45179801 Msa1156730:CDS
TGTCCTGAACCATAAGCAAA+TGG 0.492197 7_4:+45180249 None:intergenic
ATCAACTCAGCTTGGCAAAA+GGG 0.492293 7_4:-45185241 Msa1156730:five_prime_UTR
AGATTTGGTAATGTGATTGA+AGG 0.494743 7_4:+45180057 None:intergenic
GCAACAAAGTGACAATAAGA+AGG 0.495504 7_4:+45185896 None:intergenic
AAGAAAGCCTGCTCCAGTTA+TGG 0.496123 7_4:-45181340 Msa1156730:CDS
AAGAACACAGATACAACCTT+CGG 0.496456 7_4:+45185328 None:intergenic
CTCGTACAGTTACCAATGTT+GGG 0.496861 7_4:-45180011 Msa1156730:CDS
AAAAGTGAAGGGTAAAATAG+TGG 0.497193 7_4:-45181770 Msa1156730:five_prime_UTR
GTTGCATCTGCTGGAAATGA+TGG 0.500160 7_4:-45182247 Msa1156730:five_prime_UTR
AGAACACAGATACAACCTTC+GGG 0.501126 7_4:+45185329 None:intergenic
GCTTTATCTGCAGGTGCAAA+GGG 0.502305 7_4:-45181700 Msa1156730:five_prime_UTR
AGCTTTATCTGCAGGTGCAA+AGG 0.502569 7_4:-45181701 Msa1156730:five_prime_UTR
TCAAGAGATAGAGTTCAAAC+TGG 0.503606 7_4:+45186171 None:intergenic
TAACCAGTCTTTCACTCTAG+TGG 0.508663 7_4:-45181979 Msa1156730:five_prime_UTR
ACACCAGGCGCAGTTACATC+AGG 0.513205 7_4:+45180963 None:intergenic
CTTAGATCATAAACAAGTCC+AGG 0.516996 7_4:+45180201 None:intergenic
TTTCCGAAAGCATCGCGTAT+CGG 0.518862 7_4:+45180285 None:intergenic
ATAATTTCTGTTTCTGCTGG+AGG 0.519069 7_4:-45182355 Msa1156730:five_prime_UTR
TACTGTTCGGCGCAAATGAA+AGG 0.519226 7_4:-45179788 Msa1156730:exon
TCATATAATAAACAGATCAA+TGG 0.520451 7_4:-45185512 Msa1156730:five_prime_UTR
CAGTGTTACATTGTATACTT+GGG 0.520645 7_4:-45185729 Msa1156730:five_prime_UTR
AATGAAGCCATAACTGGAGC+AGG 0.522084 7_4:+45181333 None:intergenic
TTGAAAGAGAACCTGTTACA+TGG 0.522826 7_4:+45183297 None:intergenic
ATATAATGAATGACACATAT+GGG 0.524332 7_4:+45186046 None:intergenic
GTCGCTAAAACTCCTTGACT+CGG 0.524568 7_4:+45183401 None:intergenic
ACTCGTACAGTTACCAATGT+TGG 0.525420 7_4:-45180012 Msa1156730:CDS
CGCATCTCGATTTGTCACAT+TGG 0.526272 7_4:+45181935 None:intergenic
AGCATCGCGTATCGGCTTGT+TGG 0.529974 7_4:+45180293 None:intergenic
TAGGTGTTTGGCCCGAGTCA+AGG 0.530904 7_4:-45183413 Msa1156730:five_prime_UTR
AGCATATTTGGTATTGGCAA+TGG 0.531485 7_4:-45182511 Msa1156730:five_prime_UTR
ATAGCCGATTTAATAGCTGC+TGG 0.534311 7_4:+45180780 None:intergenic
ACTGCACACAACACGTTCAT+GGG 0.536323 7_4:-45185290 Msa1156730:five_prime_UTR
GGTCAGGAAGCTTTATCTGC+AGG 0.537188 7_4:-45181709 Msa1156730:five_prime_UTR
ACTAGAGTGAAAGACTGGTT+AGG 0.537957 7_4:+45181981 None:intergenic
TCACGTGCTGTACGCTGCGA+TGG 0.539485 7_4:+45182595 None:intergenic
TTAGCAAAATATGTACTTGG+TGG 0.539645 7_4:+45179988 None:intergenic
ACTTGATCCTTCAAAAGTGA+AGG 0.543314 7_4:-45181782 Msa1156730:five_prime_UTR
GGAAATGATGGACCTACCCC+TGG 0.546475 7_4:-45182235 Msa1156730:five_prime_UTR
TATATGCCTTTCATTACAGA+AGG 0.552201 7_4:-45186014 Msa1156730:five_prime_UTR
GCCGGTGGAAACTTCGTACC+AGG 0.558442 7_4:-45182538 Msa1156730:five_prime_UTR
TATTGGGCTCAGTCTTGGGA+AGG 0.560583 7_4:-45185638 Msa1156730:intron
AATCCACTAGAGTGAAAGAC+TGG 0.563936 7_4:+45181976 None:intergenic
TTTCAAGGTCAACAGAAGAA+GGG 0.564750 7_4:+45185685 None:intergenic
ACTCAGCTTGGCAAAAGGGA+AGG 0.568546 7_4:-45185237 Msa1156730:five_prime_UTR
GAAATGAAATCAACTCAGCT+TGG 0.569182 7_4:-45185249 Msa1156730:five_prime_UTR
CAACAAAGTGACAATAAGAA+GGG 0.569852 7_4:+45185897 None:intergenic
TGGGAATTTCTTGGATTGCG+TGG 0.569913 7_4:-45185271 Msa1156730:five_prime_UTR
AAATTCCAGCAAAATGGCGT+GGG 0.570402 7_4:-45183365 Msa1156730:five_prime_UTR
TTTCGGTTCAATGTAATGCA+AGG 0.571225 7_4:-45180873 Msa1156730:CDS
ATGGCTTCATTCTCATCTAG+AGG 0.572550 7_4:-45181321 Msa1156730:CDS
TAGTGGCATGTGCTCGAGAA+GGG 0.575325 7_4:-45181753 Msa1156730:five_prime_UTR
ACCAATTTGGAGAACTGCGA+TGG 0.575446 7_4:-45179843 Msa1156730:CDS
TGTACTTGGTGGCCCAACAT+TGG 0.575865 7_4:+45179999 None:intergenic
TTCAGCAGTACCATAACCAT+TGG 0.576138 7_4:-45182151 Msa1156730:five_prime_UTR
TTCAAGGTCAACAGAAGAAG+GGG 0.577537 7_4:+45185686 None:intergenic
GATTTGGTAATGTGATTGAA+GGG 0.580904 7_4:+45180058 None:intergenic
CAACATTAACAACACTTCCA+GGG 0.583133 7_4:+45182218 None:intergenic
TGTCAAATTAACAAACTCAA+AGG 0.583636 7_4:-45183333 Msa1156730:five_prime_UTR
ATGCCTTTCATTACAGAAGG+AGG 0.585123 7_4:-45186011 Msa1156730:five_prime_UTR
ATAGTGGCATGTGCTCGAGA+AGG 0.586294 7_4:-45181754 Msa1156730:five_prime_UTR
AAATCGGCTATCATGACCAC+TGG 0.587876 7_4:-45180768 Msa1156730:intron
CAAATTCCAGCAAAATGGCG+TGG 0.591908 7_4:-45183366 Msa1156730:five_prime_UTR
ACCTGGTACGAAGTTTCCAC+CGG 0.593094 7_4:+45182537 None:intergenic
GAAAGACTGGTTAGGTGGCA+AGG 0.597620 7_4:+45181989 None:intergenic
TATTCAACCCAACAGTGCAA+TGG 0.598990 7_4:-45180226 Msa1156730:CDS
CCAGCAGTGCCAGCAACATG+AGG 0.600961 7_4:+45180834 None:intergenic
AACATGAGGGCAAGACATAG+AGG 0.602418 7_4:+45180848 None:intergenic
ATTGATCAAGCAATTGATGA+TGG 0.605578 7_4:-45182385 Msa1156730:five_prime_UTR
GCTCCTCCTTCTGTAATGAA+AGG 0.605883 7_4:+45186008 None:intergenic
CTTGATCCTTCAAAAGTGAA+GGG 0.607343 7_4:-45181781 Msa1156730:five_prime_UTR
AGTTCAACCTTATATACTCA+AGG 0.611852 7_4:-45181289 Msa1156730:intron
CAGCAGTGCCAGCAACATGA+GGG 0.612431 7_4:+45180835 None:intergenic
TCGCTAAAACTCCTTGACTC+GGG 0.613412 7_4:+45183402 None:intergenic
ATACCAAATATGCTTGCACC+TGG 0.619034 7_4:+45182520 None:intergenic
AGGTCAACAGAAGAAGGGGT+TGG 0.621326 7_4:+45185690 None:intergenic
AAAATAAAATCAGTTGCAGA+GGG 0.623854 7_4:-45181730 Msa1156730:five_prime_UTR
GGCAATGGTACCATAAAAGG+AGG 0.630195 7_4:-45182496 Msa1156730:five_prime_UTR
TTGCAACCTACAAAGTGTGT+TGG 0.630247 7_4:-45182456 Msa1156730:five_prime_UTR
ACTCATACACTATCAACAGC+CGG 0.631987 7_4:-45182556 Msa1156730:five_prime_UTR
AAACCTCGACGATTGTCTGT+TGG 0.635715 7_4:+45180894 None:intergenic
AATTCCAGCAAAATGGCGTG+GGG 0.638625 7_4:-45183364 Msa1156730:five_prime_UTR
AGAGTGAAAGACTGGTTAGG+TGG 0.647696 7_4:+45181984 None:intergenic
GCACGTGACTTTGTAGGCCA+CGG 0.649823 7_4:-45182580 Msa1156730:five_prime_UTR
GAGTTGCTTGTTGTATCCAG+AGG 0.651965 7_4:+45180149 None:intergenic
TTAACAACACTTCCAGGGGT+AGG 0.652342 7_4:+45182223 None:intergenic
AACATTAACAACACTTCCAG+GGG 0.657824 7_4:+45182219 None:intergenic
GCTGCAAGTATGTTCACACC+AGG 0.672280 7_4:+45180948 None:intergenic
AAACTGGAATACTACATATG+GGG 0.673518 7_4:-45179506 Msa1156730:three_prime_UTR
AAGCAACAAGTGTGACACCA+AGG 0.681649 7_4:-45179873 Msa1156730:CDS
GCAGCAACAGTAAATACCCA+AGG 0.683341 7_4:+45182193 None:intergenic
ATATAATGCAGAAAACCCGA+AGG 0.683946 7_4:-45185344 Msa1156730:intron
CATTGGTAACAAAACAACCA+CGG 0.687698 7_4:-45182134 Msa1156730:intron
TACTTGGGAACACATTCACA+TGG 0.694255 7_4:-45185714 Msa1156730:five_prime_UTR
ATTCCAGCAAAATGGCGTGG+GGG 0.707194 7_4:-45183363 Msa1156730:five_prime_UTR
CATACACTATCAACAGCCGG+TGG 0.725157 7_4:-45182553 Msa1156730:five_prime_UTR
TTACCAACAGACAATCGTCG+AGG 0.726503 7_4:-45180897 Msa1156730:CDS
TTGATAGTGTATGAGTACCG+TGG 0.728001 7_4:+45182563 None:intergenic
CAACAAGTGTGACACCAAGG+AGG 0.736484 7_4:-45179870 Msa1156730:CDS
CCAACAGTAGACAAAACATG+AGG 0.736506 7_4:+45181625 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAATAAATAAATAAAT+AGG + chr7_4:45179919-45179938 None:intergenic 0.0%
!!! TAATTTTTTAAACTTGATTT+TGG + chr7_4:45180893-45180912 None:intergenic 10.0%
!!! TTTGTTTAATTTTTTTTTGA+AGG + chr7_4:45181504-45181523 None:intergenic 10.0%
!!! GAAAAATTATATAATTTTGA+TGG + chr7_4:45181633-45181652 None:intergenic 10.0%
!! TTATATAATTAATTATTACG+TGG + chr7_4:45184119-45184138 None:intergenic 10.0%
!!! TTTCTTTAAAAGAAATTGAT+TGG - chr7_4:45180070-45180089 Msa1156730:CDS 15.0%
!!! AATTATTTTGATTGAGTTAT+AGG + chr7_4:45180525-45180544 None:intergenic 15.0%
!!! TAGAGTTGATTTTTTTTTTT+AGG - chr7_4:45180689-45180708 Msa1156730:intron 15.0%
!!! TTGCTCAAATAATAAATTTT+TGG - chr7_4:45181000-45181019 Msa1156730:intron 15.0%
!!! TTTTTTGTTGAATTTTTACT+TGG - chr7_4:45181056-45181075 Msa1156730:intron 15.0%
!! GAATTTCTTACAAAAATAAA+AGG - chr7_4:45181152-45181171 Msa1156730:intron 15.0%
!!! TTTTTGTTTATATTTGAAAC+CGG - chr7_4:45181576-45181595 Msa1156730:intron 15.0%
!!! AAATGTTAAATAGTGTTTTA+GGG - chr7_4:45181860-45181879 Msa1156730:intron 15.0%
!! GAAAATCATAAAAAAGAAAA+GGG + chr7_4:45182404-45182423 None:intergenic 15.0%
!! AGAAAATCATAAAAAAGAAA+AGG + chr7_4:45182405-45182424 None:intergenic 15.0%
!! TGTTATACACAAAATTTAAA+TGG - chr7_4:45182444-45182463 Msa1156730:five_prime_UTR 15.0%
!!! TTAAAAGAAGATTTTAATGA+TGG - chr7_4:45182866-45182885 Msa1156730:intron 15.0%
!! ATAAATGAGAATCTTAATTA+AGG + chr7_4:45183566-45183585 None:intergenic 15.0%
!! ATATTAAAAGATTGTTACAA+GGG + chr7_4:45184169-45184188 None:intergenic 15.0%
!! AATATTAAAAGATTGTTACA+AGG + chr7_4:45184170-45184189 None:intergenic 15.0%
!!! AACCAAAACTTTTTTTTTTA+GGG + chr7_4:45184264-45184283 None:intergenic 15.0%
!!! AAACCAAAACTTTTTTTTTT+AGG + chr7_4:45184265-45184284 None:intergenic 15.0%
!!! TCTATATATGTTCAAATTTT+CGG + chr7_4:45184625-45184644 None:intergenic 15.0%
!! ATCAAGATTATATATGATTA+AGG - chr7_4:45185068-45185087 Msa1156730:intron 15.0%
!! TCAAGATTATATATGATTAA+GGG - chr7_4:45185069-45185088 Msa1156730:intron 15.0%
!!! CTAATTTATTCTTAGGTTTT+TGG + chr7_4:45179584-45179603 None:intergenic 20.0%
!! ATATAATGAATGACACATAT+GGG + chr7_4:45179625-45179644 None:intergenic 20.0%
!! TATATAATGAATGACACATA+TGG + chr7_4:45179626-45179645 None:intergenic 20.0%
!!! CATTAATTTTCATAAGCTAT+TGG - chr7_4:45179879-45179898 Msa1156730:CDS 20.0%
!! ATCTTCTCATTATGATTTAT+TGG - chr7_4:45180013-45180032 Msa1156730:CDS 20.0%
!! TCTTCTCATTATGATTTATT+GGG - chr7_4:45180014-45180033 Msa1156730:CDS 20.0%
!! TCATATAATAAACAGATCAA+TGG - chr7_4:45180156-45180175 Msa1156730:CDS 20.0%
!!! TTTTATCTGAAGCTAAAAAT+TGG - chr7_4:45180752-45180771 Msa1156730:intron 20.0%
!!! TGGATTTATGTTGATAAAAA+TGG + chr7_4:45180929-45180948 None:intergenic 20.0%
!! TCGTAAAAATATAATTTCTC+CGG + chr7_4:45181290-45181309 None:intergenic 20.0%
!! TTAGATTTAATCAACCTAAT+TGG - chr7_4:45181697-45181716 Msa1156730:five_prime_UTR 20.0%
!! ATTAAGTCTTTATTCCAATT+AGG + chr7_4:45181714-45181733 None:intergenic 20.0%
!!! GAAATGTTAAATAGTGTTTT+AGG - chr7_4:45181859-45181878 Msa1156730:intron 20.0%
!!! ATATCTTTTGTCAAAAGAAT+AGG + chr7_4:45182210-45182229 None:intergenic 20.0%
!! ATATTATCCTATTGTTTGTT+TGG - chr7_4:45182230-45182249 Msa1156730:five_prime_UTR 20.0%
!! TACTTTGACAATATTAATAG+AGG - chr7_4:45182928-45182947 Msa1156730:intron 20.0%
!!! TAAACAAATTTTTACTGATG+AGG - chr7_4:45183354-45183373 Msa1156730:five_prime_UTR 20.0%
!! AATATATGACTACGTATAAA+TGG + chr7_4:45184230-45184249 None:intergenic 20.0%
!! AATAATACCTTGAGTATATA+AGG + chr7_4:45184389-45184408 None:intergenic 20.0%
!!! TATATATGTTCAAATTTTCG+GGG + chr7_4:45184623-45184642 None:intergenic 20.0%
!!! CTATATATGTTCAAATTTTC+GGG + chr7_4:45184624-45184643 None:intergenic 20.0%
!!! TTTATGTTGATTGTTCAATA+TGG - chr7_4:45184657-45184676 Msa1156730:intron 20.0%
!! TACAATCGTAATTATAATAG+TGG - chr7_4:45184985-45185004 Msa1156730:intron 20.0%
!! CATAGATCATATATATTCAT+TGG + chr7_4:45185128-45185147 None:intergenic 20.0%
!! CAATGAATATATATGATCTA+TGG - chr7_4:45185126-45185145 Msa1156730:intron 20.0%
!!! AGGATTTAATGTGTTATTAT+TGG - chr7_4:45185900-45185919 Msa1156730:five_prime_UTR 20.0%
!! TGTCGTAATAATTGATATAT+GGG - chr7_4:45186017-45186036 Msa1156730:five_prime_UTR 20.0%
! CTCAAGACTAATTTATTCTT+AGG + chr7_4:45179591-45179610 None:intergenic 25.0%
!! AACTCATTCTTTTCTGTTTT+TGG + chr7_4:45179715-45179734 None:intergenic 25.0%
! GATGAAAAAATAAGATGATG+AGG + chr7_4:45179752-45179771 None:intergenic 25.0%
! TTACAAAATGTTTATGACAG+TGG + chr7_4:45180250-45180269 None:intergenic 25.0%
!! ATGCTCAAATAACTTTTACT+TGG - chr7_4:45181027-45181046 Msa1156730:intron 25.0%
!! TTCTTTTTCTCTCTTCTTAT+TGG + chr7_4:45181371-45181390 None:intergenic 25.0%
! TTGCTTATATTCTAGATTGA+AGG + chr7_4:45181460-45181479 None:intergenic 25.0%
! AAAGACTTAATTAACCTACT+TGG - chr7_4:45181723-45181742 Msa1156730:five_prime_UTR 25.0%
! TAACGAATGTAGTGTTATAT+GGG + chr7_4:45182031-45182050 None:intergenic 25.0%
! TTAACGAATGTAGTGTTATA+TGG + chr7_4:45182032-45182051 None:intergenic 25.0%
! TGTCAAATTAACAAACTCAA+AGG - chr7_4:45182335-45182354 Msa1156730:five_prime_UTR 25.0%
! ATAAAAAAGAAAAGGGAAGT+AGG + chr7_4:45182397-45182416 None:intergenic 25.0%
! ATCGCTCAAAAAAAATAAGA+GGG + chr7_4:45182644-45182663 None:intergenic 25.0%
! AATCGCTCAAAAAAAATAAG+AGG + chr7_4:45182645-45182664 None:intergenic 25.0%
! CAAAATCATCATTAAAAGAG+GGG + chr7_4:45182693-45182712 None:intergenic 25.0%
! CCAAAATCATCATTAAAAGA+GGG + chr7_4:45182694-45182713 None:intergenic 25.0%
! TCCAAAATCATCATTAAAAG+AGG + chr7_4:45182695-45182714 None:intergenic 25.0%
! AAAACACAATTGACAAAAGA+TGG - chr7_4:45182716-45182735 Msa1156730:intron 25.0%
! AAACACAATTGACAAAAGAT+GGG - chr7_4:45182717-45182736 Msa1156730:intron 25.0%
! AATCGCTCAAAAAAAAAAGA+TGG - chr7_4:45182746-45182765 Msa1156730:intron 25.0%
! ATCGCTCAAAAAAAAAAGAT+GGG - chr7_4:45182747-45182766 Msa1156730:intron 25.0%
!! GTTTAGAATTTGTACTAGAT+TGG + chr7_4:45183339-45183358 None:intergenic 25.0%
! AAAATAAAATCAGTTGCAGA+GGG - chr7_4:45183938-45183957 Msa1156730:intron 25.0%
! GAAATCAACCAAAAGTTAAT+GGG - chr7_4:45184002-45184021 Msa1156730:intron 25.0%
!! CTCCCTAAAAAAAAAAGTTT+TGG - chr7_4:45184259-45184278 Msa1156730:intron 25.0%
!!! AAAAAAAAGTTTTGGTTTGC+AGG - chr7_4:45184267-45184286 Msa1156730:intron 25.0%
!!! AAAAAAAGTTTTGGTTTGCA+GGG - chr7_4:45184268-45184287 Msa1156730:intron 25.0%
! TCACAAGCAAAAACTTTATA+TGG - chr7_4:45184305-45184324 Msa1156730:intron 25.0%
! ATATAAGGTTGAACTTGATT+AGG + chr7_4:45184374-45184393 None:intergenic 25.0%
!! TCAAGGTATTATTATACACT+TGG - chr7_4:45184396-45184415 Msa1156730:intron 25.0%
!! TAAGATTTTGAATGAGAATG+TGG - chr7_4:45184535-45184554 Msa1156730:intron 25.0%
!! ATATATGTTCAAATTTTCGG+GGG + chr7_4:45184622-45184641 None:intergenic 25.0%
! TGTTTATGATCTAAGCATTA+AGG - chr7_4:45185475-45185494 Msa1156730:five_prime_UTR 25.0%
! TCCTTGAATTTCAAGAAAAT+AGG - chr7_4:45185743-45185762 Msa1156730:intron 25.0%
!! ACCTATTTTCTTGAAATTCA+AGG + chr7_4:45185747-45185766 None:intergenic 25.0%
! GTGTCGTAATAATTGATATA+TGG - chr7_4:45186016-45186035 Msa1156730:five_prime_UTR 25.0%
! AAAATGCAGTACAAAGTTTA+TGG + chr7_4:45186073-45186092 None:intergenic 25.0%
!! TATCTAGTTTAAGTGATGAA+TGG - chr7_4:45186109-45186128 Msa1156730:five_prime_UTR 25.0%
TGAACTCTATCTCTTGAATT+AGG - chr7_4:45179503-45179522 Msa1156730:three_prime_UTR 30.0%
TATATGCCTTTCATTACAGA+AGG - chr7_4:45179654-45179673 Msa1156730:three_prime_UTR 30.0%
CAACAAAGTGACAATAAGAA+GGG + chr7_4:45179774-45179793 None:intergenic 30.0%
ACAGTGTTACATTGTATACT+TGG - chr7_4:45179938-45179957 Msa1156730:CDS 30.0%
CAGTGTTACATTGTATACTT+GGG - chr7_4:45179939-45179958 Msa1156730:CDS 30.0%
AGTGAGAAACACAATTAGAA+TGG - chr7_4:45180222-45180241 Msa1156730:CDS 30.0%
TGTATCAATGTTAGCTATGA+TGG + chr7_4:45180470-45180489 None:intergenic 30.0%
ATCATAGCTAACATTGATAC+AGG - chr7_4:45180469-45180488 Msa1156730:intron 30.0%
ATTGAGTTATAGGACTAATG+TGG + chr7_4:45180515-45180534 None:intergenic 30.0%
CATTTGCAACTTAAAAGAAC+AGG + chr7_4:45181240-45181259 None:intergenic 30.0%
!! TCTAGATTGAAGGAGTATTA+TGG + chr7_4:45181450-45181469 None:intergenic 30.0%
TTGAGATTATAGTACTACTC+CGG + chr7_4:45181598-45181617 None:intergenic 30.0%
! TGTAGTTTTTGTATCCAAGT+AGG + chr7_4:45181740-45181759 None:intergenic 30.0%
TACTTGGATACAAAAACTAC+AGG - chr7_4:45181739-45181758 Msa1156730:five_prime_UTR 30.0%
CACTACATTCGTTAACAATT+AGG - chr7_4:45182037-45182056 Msa1156730:intron 30.0%
TCCTATTGTTTGTTTGGATT+AGG - chr7_4:45182236-45182255 Msa1156730:five_prime_UTR 30.0%
ACCTAATCCAAACAAACAAT+AGG + chr7_4:45182240-45182259 None:intergenic 30.0%
TCGCTCAAAAAAAAAAGAGA+GGG + chr7_4:45182518-45182537 None:intergenic 30.0%
ATCGCTCAAAAAAAAAAGAG+AGG + chr7_4:45182519-45182538 None:intergenic 30.0%
TAGAAAGGAGGCAAAAAAAT+GGG + chr7_4:45182549-45182568 None:intergenic 30.0%
AAGTGCAATTAAACACAAGA+AGG + chr7_4:45182582-45182601 None:intergenic 30.0%
ACAATTGGCAAAAAGATAGA+GGG + chr7_4:45182608-45182627 None:intergenic 30.0%
TCGCTCAAAAAAAATAAGAG+GGG + chr7_4:45182643-45182662 None:intergenic 30.0%
ATCATTAAAAGAGGGGAAAT+GGG + chr7_4:45182686-45182705 None:intergenic 30.0%
! CCCTCTTTTAATGATGATTT+TGG - chr7_4:45182691-45182710 Msa1156730:intron 30.0%
AACACAATTGACAAAAGATG+GGG - chr7_4:45182718-45182737 Msa1156730:intron 30.0%
TCGCTCAAAAAAAAAAGATG+GGG - chr7_4:45182748-45182767 Msa1156730:intron 30.0%
TTGCACTACATATACATATC+AGG - chr7_4:45182990-45183009 Msa1156730:intron 30.0%
ATACATATCAGGAAGCTAAT+TGG - chr7_4:45183001-45183020 Msa1156730:intron 30.0%
ATTGATCAAGCAATTGATGA+TGG - chr7_4:45183283-45183302 Msa1156730:intron 30.0%
!! GATATAATTTCTGTTTCTGC+TGG - chr7_4:45183310-45183329 Msa1156730:five_prime_UTR 30.0%
TTTACTGATGAGGTTTCAAT+AGG - chr7_4:45183364-45183383 Msa1156730:five_prime_UTR 30.0%
ATATTATTAGTTGCATCTGC+TGG - chr7_4:45183412-45183431 Msa1156730:five_prime_UTR 30.0%
!! TGTTTTGTTACCAATGGTTA+TGG + chr7_4:45183530-45183549 None:intergenic 30.0%
!! ATTTTACCCTTCACTTTTGA+AGG + chr7_4:45183896-45183915 None:intergenic 30.0%
AAAAGTGAAGGGTAAAATAG+TGG - chr7_4:45183898-45183917 Msa1156730:intron 30.0%
GAAAATAAAATCAGTTGCAG+AGG - chr7_4:45183937-45183956 Msa1156730:intron 30.0%
GGAAATCAACCAAAAGTTAA+TGG - chr7_4:45184001-45184020 Msa1156730:intron 30.0%
AGTTCAACCTTATATACTCA+AGG - chr7_4:45184379-45184398 Msa1156730:intron 30.0%
AACAACAACACAAGTGAAAT+TGG + chr7_4:45184564-45184583 None:intergenic 30.0%
TCAAAACACTTCATCCTAAT+TGG - chr7_4:45184862-45184881 Msa1156730:intron 30.0%
! AATTTTGTCATCTTCCGATT+GGG + chr7_4:45185100-45185119 None:intergenic 30.0%
! CTGAGAAATGTGATTTTACT+GGG + chr7_4:45185240-45185259 None:intergenic 30.0%
! ACTGAGAAATGTGATTTTAC+TGG + chr7_4:45185241-45185260 None:intergenic 30.0%
!! ATCTTGTCATTTGGACTTTT+TGG - chr7_4:45185263-45185282 Msa1156730:five_prime_UTR 30.0%
GACATATACGATTGTTACAT+AGG + chr7_4:45185289-45185308 None:intergenic 30.0%
ACTTACTTGTCAAGAAAATG+TGG - chr7_4:45185326-45185345 Msa1156730:five_prime_UTR 30.0%
CTTACTTGTCAAGAAAATGT+GGG - chr7_4:45185327-45185346 Msa1156730:five_prime_UTR 30.0%
AACATGACATTTACTTGTTC+AGG - chr7_4:45185560-45185579 Msa1156730:intron 30.0%
!! GATTTGGTAATGTGATTGAA+GGG + chr7_4:45185613-45185632 None:intergenic 30.0%
!! AGATTTGGTAATGTGATTGA+AGG + chr7_4:45185614-45185633 None:intergenic 30.0%
TCAATCACATTACCAAATCT+TGG - chr7_4:45185614-45185633 Msa1156730:intron 30.0%
CAATCACATTACCAAATCTT+GGG - chr7_4:45185615-45185634 Msa1156730:intron 30.0%
TTAGCAAAATATGTACTTGG+TGG + chr7_4:45185683-45185702 None:intergenic 30.0%
GCTTTAGCAAAATATGTACT+TGG + chr7_4:45185686-45185705 None:intergenic 30.0%
! ACAACAGCAATTTTATATCC+AGG + chr7_4:45185716-45185735 None:intergenic 30.0%
TTCTTGAAATTCAAGGAACT+TGG + chr7_4:45185740-45185759 None:intergenic 30.0%
CAAATGGAAAACACATTGTA+AGG - chr7_4:45185849-45185868 Msa1156730:intron 30.0%
!!! TCGATTTTGTTGTTGTTGTT+TGG - chr7_4:45185951-45185970 Msa1156730:five_prime_UTR 30.0%
!!! CGATTTTGTTGTTGTTGTTT+GGG - chr7_4:45185952-45185971 Msa1156730:five_prime_UTR 30.0%
! AACTTTGTACTGCATTTTGA+TGG - chr7_4:45186075-45186094 Msa1156730:five_prime_UTR 30.0%
!! ACTTTGTACTGCATTTTGAT+GGG - chr7_4:45186076-45186095 Msa1156730:five_prime_UTR 30.0%
ATTCACTCAATAACAGAAAC+TGG - chr7_4:45186146-45186165 Msa1156730:five_prime_UTR 30.0%
AGAAACTGGAATACTACATA+TGG - chr7_4:45186160-45186179 Msa1156730:five_prime_UTR 30.0%
GAAACTGGAATACTACATAT+GGG - chr7_4:45186161-45186180 Msa1156730:five_prime_UTR 30.0%
AAACTGGAATACTACATATG+GGG - chr7_4:45186162-45186181 Msa1156730:five_prime_UTR 30.0%
TCAAGAGATAGAGTTCAAAC+TGG + chr7_4:45179500-45179519 None:intergenic 35.0%
AAGATGATGAGGACACAAAA+TGG + chr7_4:45179741-45179760 None:intergenic 35.0%
GCAACAAAGTGACAATAAGA+AGG + chr7_4:45179775-45179794 None:intergenic 35.0%
TTTCAAGGTCAACAGAAGAA+GGG + chr7_4:45179986-45180005 None:intergenic 35.0%
TATATTCATCATTCACAGCC+AGG - chr7_4:45180107-45180126 Msa1156730:CDS 35.0%
CTTTGCAGCTATACTTGAAA+AGG - chr7_4:45180179-45180198 Msa1156730:CDS 35.0%
ATATAATGCAGAAAACCCGA+AGG - chr7_4:45180324-45180343 Msa1156730:intron 35.0%
AAGAACACAGATACAACCTT+CGG + chr7_4:45180343-45180362 None:intergenic 35.0%
GAAATGAAATCAACTCAGCT+TGG - chr7_4:45180419-45180438 Msa1156730:intron 35.0%
ATTCAGAAACATAGTGTCTC+TGG - chr7_4:45180614-45180633 Msa1156730:intron 35.0%
GCATGTACAGATAAAGACAA+TGG + chr7_4:45181196-45181215 None:intergenic 35.0%
TGTGTGTCGTGTATATTAAC+CGG - chr7_4:45181268-45181287 Msa1156730:intron 35.0%
!! GATTGAAGGAGTATTATGGA+TGG + chr7_4:45181446-45181465 None:intergenic 35.0%
!! ATACCTCAAGAGCATTTGTT+AGG - chr7_4:45182001-45182020 Msa1156730:five_prime_UTR 35.0%
TTTCCTAACAAATGCTCTTG+AGG + chr7_4:45182007-45182026 None:intergenic 35.0%
! GTTTGTTTGGATTAGGTGTT+TGG - chr7_4:45182243-45182262 Msa1156730:five_prime_UTR 35.0%
TAGGACAAATTCCAGCAAAA+TGG - chr7_4:45182297-45182316 Msa1156730:five_prime_UTR 35.0%
CAAAGAAAGTTCCATGTAAC+AGG - chr7_4:45182360-45182379 Msa1156730:five_prime_UTR 35.0%
TTGAAAGAGAACCTGTTACA+TGG + chr7_4:45182374-45182393 None:intergenic 35.0%
CACAATTAGCAAAAGATAGG+GGG + chr7_4:45182781-45182800 None:intergenic 35.0%
GCACAATTAGCAAAAGATAG+GGG + chr7_4:45182780-45182799 None:intergenic 35.0%
CGCACAATTAGCAAAAGATA+GGG + chr7_4:45182779-45182798 None:intergenic 35.0%
TCGCACAATTAGCAAAAGAT+AGG + chr7_4:45182778-45182797 None:intergenic 35.0%
AGAAAGGAGGCAAAAAAATG+GGG + chr7_4:45182548-45182567 None:intergenic 35.0%
CTAGAAAGGAGGCAAAAAAA+TGG + chr7_4:45182550-45182569 None:intergenic 35.0%
GAAGGTTCATCTAACTAGAA+AGG + chr7_4:45182564-45182583 None:intergenic 35.0%
CACAATTGGCAAAAAGATAG+AGG + chr7_4:45182609-45182628 None:intergenic 35.0%
! CTATCTTTTTGCCAATTGTG+CGG - chr7_4:45182609-45182628 Msa1156730:five_prime_UTR 35.0%
CGCTCAAAAAAAATAAGAGG+GGG + chr7_4:45182642-45182661 None:intergenic 35.0%
TCATTAAAAGAGGGGAAATG+GGG + chr7_4:45182685-45182704 None:intergenic 35.0%
CATCATTAAAAGAGGGGAAA+TGG + chr7_4:45182687-45182706 None:intergenic 35.0%
TCGCACAATTAGCAAAAGAT+AGG - chr7_4:45182778-45182797 Msa1156730:intron 35.0%
CGCACAATTAGCAAAAGATA+GGG - chr7_4:45182779-45182798 Msa1156730:intron 35.0%
GCACAATTAGCAAAAGATAG+GGG - chr7_4:45182780-45182799 Msa1156730:intron 35.0%
CACAATTAGCAAAAGATAGG+GGG - chr7_4:45182781-45182800 Msa1156730:intron 35.0%
ACAATTAGCAAAAGATAGGG+GGG - chr7_4:45182782-45182801 Msa1156730:intron 35.0%
GATGGTACTAATTAGAAGAC+CGG - chr7_4:45182884-45182903 Msa1156730:intron 35.0%
TAATTAGAAGACCGGTTGAA+CGG - chr7_4:45182892-45182911 Msa1156730:intron 35.0%
! ATAAGCATCGCTGAAAAATC+TGG + chr7_4:45183029-45183048 None:intergenic 35.0%
GATGCTTATGAGCGATATAA+TGG - chr7_4:45183040-45183059 Msa1156730:intron 35.0%
!! AGCATATTTGGTATTGGCAA+TGG - chr7_4:45183157-45183176 Msa1156730:intron 35.0%
ATTGGCAATGGTACCATAAA+AGG - chr7_4:45183169-45183188 Msa1156730:intron 35.0%
!!! TTGTTTTGGTGCTGATGTAT+TGG - chr7_4:45183255-45183274 Msa1156730:intron 35.0%
!! ATAATTTCTGTTTCTGCTGG+AGG - chr7_4:45183313-45183332 Msa1156730:five_prime_UTR 35.0%
AACATTAACAACACTTCCAG+GGG + chr7_4:45183452-45183471 None:intergenic 35.0%
CAACATTAACAACACTTCCA+GGG + chr7_4:45183453-45183472 None:intergenic 35.0%
TGTTGTTAATGTTGCTCCTT+GGG - chr7_4:45183459-45183478 Msa1156730:intron 35.0%
! CATTGGTAACAAAACAACCA+CGG - chr7_4:45183534-45183553 Msa1156730:intron 35.0%
CTTAATTAAGGATGATACCG+TGG + chr7_4:45183554-45183573 None:intergenic 35.0%
TTCCAAAAGCTTTACATCAG+CGG - chr7_4:45183766-45183785 Msa1156730:intron 35.0%
TTTGAAGGATCAAGTGTTCT+TGG + chr7_4:45183881-45183900 None:intergenic 35.0%
ACTTGATCCTTCAAAAGTGA+AGG - chr7_4:45183886-45183905 Msa1156730:intron 35.0%
CTTGATCCTTCAAAAGTGAA+GGG - chr7_4:45183887-45183906 Msa1156730:intron 35.0%
! AGTGTTCTCCCATTAACTTT+TGG + chr7_4:45184013-45184032 None:intergenic 35.0%
!!! GCAGTTGTTTTTATACGAGA+AGG + chr7_4:45184097-45184116 None:intergenic 35.0%
TTTCGGTTCAATGTAATGCA+AGG - chr7_4:45184795-45184814 Msa1156730:intron 35.0%
! CTATATATAGTTTGTGCGTG+TGG + chr7_4:45184945-45184964 None:intergenic 35.0%
CACACGCACAAACTATATAT+AGG - chr7_4:45184943-45184962 Msa1156730:intron 35.0%
GATTAAGGGAAAATCCCAAT+CGG - chr7_4:45185083-45185102 Msa1156730:intron 35.0%
! CAATTTTGTCATCTTCCGAT+TGG + chr7_4:45185101-45185120 None:intergenic 35.0%
CAATCGGAAGATGACAAAAT+TGG - chr7_4:45185099-45185118 Msa1156730:intron 35.0%
TCTCAGTAGATCTTGTCATT+TGG - chr7_4:45185254-45185273 Msa1156730:five_prime_UTR 35.0%
CTTAGATCATAAACAAGTCC+AGG + chr7_4:45185470-45185489 None:intergenic 35.0%
TTAAACTTCTTATGTGCCTC+TGG - chr7_4:45185503-45185522 Msa1156730:five_prime_UTR 35.0%
ATAGCATTCAACCCAAGATT+TGG + chr7_4:45185629-45185648 None:intergenic 35.0%
ATGCCTTTCATTACAGAAGG+AGG - chr7_4:45179657-45179676 Msa1156730:three_prime_UTR 40.0%
TCATGTTCATGCCAGCAAAA+AGG - chr7_4:45179799-45179818 Msa1156730:CDS 40.0%
! AAAGTGGCTTACCTTTTTGC+TGG + chr7_4:45179813-45179832 None:intergenic 40.0%
GTGTGATCAAGAAGCAAAAG+TGG + chr7_4:45179829-45179848 None:intergenic 40.0%
TACTTGGGAACACATTCACA+TGG - chr7_4:45179954-45179973 Msa1156730:CDS 40.0%
TTCAAGGTCAACAGAAGAAG+GGG + chr7_4:45179985-45180004 None:intergenic 40.0%
GTTTCAAGGTCAACAGAAGA+AGG + chr7_4:45179987-45180006 None:intergenic 40.0%
GAGAAGATGTAGCAGTTTCA+AGG + chr7_4:45180001-45180020 None:intergenic 40.0%
TGATTTATTGGGCTCAGTCT+TGG - chr7_4:45180025-45180044 Msa1156730:CDS 40.0%
GATTTATTGGGCTCAGTCTT+GGG - chr7_4:45180026-45180045 Msa1156730:CDS 40.0%
! TTGCTTCTTTTGCATTCTCC+TGG + chr7_4:45180128-45180147 None:intergenic 40.0%
AGAACACAGATACAACCTTC+GGG + chr7_4:45180342-45180361 None:intergenic 40.0%
ACACGTTCATGGGAATTTCT+TGG - chr7_4:45180388-45180407 Msa1156730:intron 40.0%
AATCAACTCAGCTTGGCAAA+AGG - chr7_4:45180426-45180445 Msa1156730:intron 40.0%
ATCAACTCAGCTTGGCAAAA+GGG - chr7_4:45180427-45180446 Msa1156730:intron 40.0%
AGTGTGTCTACGTGTATGTT+TGG + chr7_4:45180949-45180968 None:intergenic 40.0%
ACTACAGGCTTTCTTTGAGT+TGG - chr7_4:45181754-45181773 Msa1156730:five_prime_UTR 40.0%
!! AGTTTTAGCGACAGAGGAAT+AGG - chr7_4:45182278-45182297 Msa1156730:five_prime_UTR 40.0%
AAATTCCAGCAAAATGGCGT+GGG - chr7_4:45182303-45182322 Msa1156730:five_prime_UTR 40.0%
GGTTCATCTAACTAGAAAGG+AGG + chr7_4:45182561-45182580 None:intergenic 40.0%
AGAGGAAAGAAAAAGCAACC+AGG - chr7_4:45182946-45182965 Msa1156730:intron 40.0%
GAGGAAAGAAAAAGCAACCA+GGG - chr7_4:45182947-45182966 Msa1156730:intron 40.0%
GTCAACAGAAAGTTTAACCC+TGG + chr7_4:45182967-45182986 None:intergenic 40.0%
!! TTGATAGTGTATGAGTACCG+TGG + chr7_4:45183108-45183127 None:intergenic 40.0%
ACTCATACACTATCAACAGC+CGG - chr7_4:45183112-45183131 Msa1156730:intron 40.0%
ATACCAAATATGCTTGCACC+TGG + chr7_4:45183151-45183170 None:intergenic 40.0%
GGTGCAAGCATATTTGGTAT+TGG - chr7_4:45183151-45183170 Msa1156730:intron 40.0%
! TCTTGGTGAACCTCCTTTTA+TGG + chr7_4:45183185-45183204 None:intergenic 40.0%
TTGCAACCTACAAAGTGTGT+TGG - chr7_4:45183212-45183231 Msa1156730:intron 40.0%
TAGAGACCAACACACTTTGT+AGG + chr7_4:45183221-45183240 None:intergenic 40.0%
! ACAGATGTCGCTAGTTGTTT+TGG - chr7_4:45183241-45183260 Msa1156730:intron 40.0%
GCAACATTAACAACACTTCC+AGG + chr7_4:45183454-45183473 None:intergenic 40.0%
! GTGTTGTTAATGTTGCTCCT+TGG - chr7_4:45183458-45183477 Msa1156730:intron 40.0%
TTCAGCAGTACCATAACCAT+TGG - chr7_4:45183517-45183536 Msa1156730:intron 40.0%
!! CGTGGTTGTTTTGTTACCAA+TGG + chr7_4:45183536-45183555 None:intergenic 40.0%
TGGCAAGGTTACAAAAAGAC+TGG + chr7_4:45183667-45183686 None:intergenic 40.0%
! ACTAGAGTGAAAGACTGGTT+AGG + chr7_4:45183690-45183709 None:intergenic 40.0%
TAACCAGTCTTTCACTCTAG+TGG - chr7_4:45183689-45183708 Msa1156730:intron 40.0%
AATCCACTAGAGTGAAAGAC+TGG + chr7_4:45183695-45183714 None:intergenic 40.0%
! TACCGCTGATGTAAAGCTTT+TGG + chr7_4:45183771-45183790 None:intergenic 40.0%
AAAAGCTTTACATCAGCGGT+AGG - chr7_4:45183770-45183789 Msa1156730:intron 40.0%
CCAACAGTAGACAAAACATG+AGG + chr7_4:45184046-45184065 None:intergenic 40.0%
! CCTCATGTTTTGTCTACTGT+TGG - chr7_4:45184043-45184062 Msa1156730:intron 40.0%
! GTTTTTATACGAGAAGGCAG+TGG + chr7_4:45184091-45184110 None:intergenic 40.0%
GATGAGAATGAAGCCATAAC+TGG + chr7_4:45184344-45184363 None:intergenic 40.0%
ATGGCTTCATTCTCATCTAG+AGG - chr7_4:45184347-45184366 Msa1156730:intron 40.0%
CAATGTGGGACTTTCTAACT+CGG + chr7_4:45184459-45184478 None:intergenic 40.0%
GAGTCCAGCAGCTATTAAAT+CGG - chr7_4:45184884-45184903 Msa1156730:intron 40.0%
! ATAGCCGATTTAATAGCTGC+TGG + chr7_4:45184891-45184910 None:intergenic 40.0%
! ATATAGTTTGTGCGTGTGGT+GGG + chr7_4:45184941-45184960 None:intergenic 40.0%
! TATATAGTTTGTGCGTGTGG+TGG + chr7_4:45184942-45184961 None:intergenic 40.0%
TCGGAAGATGACAAAATTGG+TGG - chr7_4:45185102-45185121 Msa1156730:intron 40.0%
GATCCATTTGCTTATGGTTC+AGG - chr7_4:45185416-45185435 Msa1156730:intron 40.0%
TGTCCTGAACCATAAGCAAA+TGG + chr7_4:45185422-45185441 None:intergenic 40.0%
TATTCAACCCAACAGTGCAA+TGG - chr7_4:45185442-45185461 Msa1156730:intron 40.0%
ACTCGTACAGTTACCAATGT+TGG - chr7_4:45185656-45185675 Msa1156730:five_prime_UTR 40.0%
CTCGTACAGTTACCAATGTT+GGG - chr7_4:45185657-45185676 Msa1156730:five_prime_UTR 40.0%
TTTGCTAAAGCTCAATTGCC+TGG - chr7_4:45185695-45185714 Msa1156730:five_prime_UTR 40.0%
CCAAATTGGTATTTCCTCCT+TGG + chr7_4:45185815-45185834 None:intergenic 40.0%
CCAAGGAGGAAATACCAATT+TGG - chr7_4:45185812-45185831 Msa1156730:intron 40.0%
TAAGGAGTCCTGTTACTGTT+CGG - chr7_4:45185867-45185886 Msa1156730:intron 40.0%
GCTCCTCCTTCTGTAATGAA+AGG + chr7_4:45179663-45179682 None:intergenic 45.0%
AACTGCACACAACACGTTCA+TGG - chr7_4:45180377-45180396 Msa1156730:intron 45.0%
ACTGCACACAACACGTTCAT+GGG - chr7_4:45180378-45180397 Msa1156730:intron 45.0%
TGGGAATTTCTTGGATTGCG+TGG - chr7_4:45180397-45180416 Msa1156730:intron 45.0%
TCGCTAAAACTCCTTGACTC+GGG + chr7_4:45182269-45182288 None:intergenic 45.0%
GTCGCTAAAACTCCTTGACT+CGG + chr7_4:45182270-45182289 None:intergenic 45.0%
!! TCAAGGAGTTTTAGCGACAG+AGG - chr7_4:45182272-45182291 Msa1156730:five_prime_UTR 45.0%
CAAATTCCAGCAAAATGGCG+TGG - chr7_4:45182302-45182321 Msa1156730:five_prime_UTR 45.0%
AATTCCAGCAAAATGGCGTG+GGG - chr7_4:45182304-45182323 Msa1156730:five_prime_UTR 45.0%
ATCAGACCTATCCGTTCAAC+CGG + chr7_4:45182906-45182925 None:intergenic 45.0%
GTACCAGGTGCAAGCATATT+TGG - chr7_4:45183145-45183164 Msa1156730:intron 45.0%
GGCAATGGTACCATAAAAGG+AGG - chr7_4:45183172-45183191 Msa1156730:intron 45.0%
!! TAGGTTGCAACTCTAGCTCT+TGG + chr7_4:45183202-45183221 None:intergenic 45.0%
GTTGCATCTGCTGGAAATGA+TGG - chr7_4:45183421-45183440 Msa1156730:intron 45.0%
TTAACAACACTTCCAGGGGT+AGG + chr7_4:45183448-45183467 None:intergenic 45.0%
! AGAGTGAAAGACTGGTTAGG+TGG + chr7_4:45183687-45183706 None:intergenic 45.0%
! CGCATCTCGATTTGTCACAT+TGG + chr7_4:45183736-45183755 None:intergenic 45.0%
AAAATCAGTTGCAGAGGGTC+AGG - chr7_4:45183943-45183962 Msa1156730:intron 45.0%
! AGCTTTATCTGCAGGTGCAA+AGG - chr7_4:45183967-45183986 Msa1156730:intron 45.0%
GCTTTATCTGCAGGTGCAAA+GGG - chr7_4:45183968-45183987 Msa1156730:intron 45.0%
AGGTGCAAAGGGAGTGATAT+TGG - chr7_4:45183979-45183998 Msa1156730:intron 45.0%
GGTGCAAAGGGAGTGATATT+GGG - chr7_4:45183980-45183999 Msa1156730:intron 45.0%
AAGAAAGCCTGCTCCAGTTA+TGG - chr7_4:45184328-45184347 Msa1156730:intron 45.0%
AATGAAGCCATAACTGGAGC+AGG + chr7_4:45184338-45184357 None:intergenic 45.0%
CGAGTTAGAAAGTCCCACAT+TGG - chr7_4:45184457-45184476 Msa1156730:intron 45.0%
GAAAGTCCCACATTGGATGA+AGG - chr7_4:45184464-45184483 Msa1156730:intron 45.0%
TCCACTCCTTCATCCAATGT+GGG + chr7_4:45184473-45184492 None:intergenic 45.0%
ATCCACTCCTTCATCCAATG+TGG + chr7_4:45184474-45184493 None:intergenic 45.0%
TTACCAACAGACAATCGTCG+AGG - chr7_4:45184771-45184790 Msa1156730:intron 45.0%
AAACCTCGACGATTGTCTGT+TGG + chr7_4:45184777-45184796 None:intergenic 45.0%
! CAGACAATCGTCGAGGTTTT+CGG - chr7_4:45184778-45184797 Msa1156730:intron 45.0%
AACATGAGGGCAAGACATAG+AGG + chr7_4:45184823-45184842 None:intergenic 45.0%
ATAGCTGCTGGACTCCAATT+AGG + chr7_4:45184879-45184898 None:intergenic 45.0%
AAATCGGCTATCATGACCAC+TGG - chr7_4:45184900-45184919 Msa1156730:intron 45.0%
GGGTTGAGAGAATATACCAG+TGG + chr7_4:45184919-45184938 None:intergenic 45.0%
! TATAGTTTGTGCGTGTGGTG+GGG + chr7_4:45184940-45184959 None:intergenic 45.0%
!! TTTCCGAAAGCATCGCGTAT+CGG + chr7_4:45185386-45185405 None:intergenic 45.0%
CCATAAGCAAATGGATCTGC+TGG + chr7_4:45185413-45185432 None:intergenic 45.0%
CCAGCAGATCCATTTGCTTA+TGG - chr7_4:45185410-45185429 Msa1156730:intron 45.0%
!! GAGTTGCTTGTTGTATCCAG+AGG + chr7_4:45185522-45185541 None:intergenic 45.0%
AAGCAACAAGTGTGACACCA+AGG - chr7_4:45185795-45185814 Msa1156730:intron 45.0%
ACCAATTTGGAGAACTGCGA+TGG - chr7_4:45185825-45185844 Msa1156730:intron 45.0%
TCCATCGCAGTTCTCCAAAT+TGG + chr7_4:45185829-45185848 None:intergenic 45.0%
TACTGTTCGGCGCAAATGAA+AGG - chr7_4:45185880-45185899 Msa1156730:five_prime_UTR 45.0%
!! AATATTACTTAAATTTAAAT+TGG + chr7_4:45182821-45182840 None:intergenic 5.0%
!! ACAATAATAATAAATTAATA+AGG + chr7_4:45183637-45183656 None:intergenic 5.0%
!! ATTAATTTATTATTATTGTT+AGG - chr7_4:45183638-45183657 Msa1156730:intron 5.0%
!! TTAATTTATTATTATTGTTA+GGG - chr7_4:45183639-45183658 Msa1156730:intron 5.0%
AGGTCAACAGAAGAAGGGGT+TGG + chr7_4:45179981-45180000 None:intergenic 50.0%
TATTGGGCTCAGTCTTGGGA+AGG - chr7_4:45180030-45180049 Msa1156730:CDS 50.0%
ACTCAGCTTGGCAAAAGGGA+AGG - chr7_4:45180431-45180450 Msa1156730:intron 50.0%
GCTTGGCAAAAGGGAAGGTT+TGG - chr7_4:45180436-45180455 Msa1156730:intron 50.0%
AAAAGGACGAGAGAGAGCAG+AGG - chr7_4:45181169-45181188 Msa1156730:intron 50.0%
AAAGGACGAGAGAGAGCAGA+GGG - chr7_4:45181170-45181189 Msa1156730:intron 50.0%
ATTCCAGCAAAATGGCGTGG+GGG - chr7_4:45182305-45182324 Msa1156730:five_prime_UTR 50.0%
GGGAAATGGGGCAAAAGATG+GGG + chr7_4:45182673-45182692 None:intergenic 50.0%
GGGGAAATGGGGCAAAAGAT+GGG + chr7_4:45182674-45182693 None:intergenic 50.0%
AGGGGAAATGGGGCAAAAGA+TGG + chr7_4:45182675-45182694 None:intergenic 50.0%
AGAAGACCGGTTGAACGGAT+AGG - chr7_4:45182897-45182916 Msa1156730:intron 50.0%
CGTACAGCACGTGACTTTGT+AGG - chr7_4:45183082-45183101 Msa1156730:intron 50.0%
CATACACTATCAACAGCCGG+TGG - chr7_4:45183115-45183134 Msa1156730:intron 50.0%
ACCTGGTACGAAGTTTCCAC+CGG + chr7_4:45183134-45183153 None:intergenic 50.0%
! GAAAGACTGGTTAGGTGGCA+AGG + chr7_4:45183682-45183701 None:intergenic 50.0%
ATAGTGGCATGTGCTCGAGA+AGG - chr7_4:45183914-45183933 Msa1156730:intron 50.0%
TAGTGGCATGTGCTCGAGAA+GGG - chr7_4:45183915-45183934 Msa1156730:intron 50.0%
! GGTCAGGAAGCTTTATCTGC+AGG - chr7_4:45183959-45183978 Msa1156730:intron 50.0%
TTGTCTACTGTTGGCAAGCG+TGG - chr7_4:45184052-45184071 Msa1156730:intron 50.0%
TGTCTACTGTTGGCAAGCGT+GGG - chr7_4:45184053-45184072 Msa1156730:intron 50.0%
TCCCACATTGGATGAAGGAG+TGG - chr7_4:45184469-45184488 Msa1156730:intron 50.0%
GCTGCAAGTATGTTCACACC+AGG + chr7_4:45184723-45184742 None:intergenic 50.0%
ATGTCTTGCCCTCATGTTGC+TGG - chr7_4:45184825-45184844 Msa1156730:intron 50.0%
! ATAGTTTGTGCGTGTGGTGG+GGG + chr7_4:45184939-45184958 None:intergenic 50.0%
AAGCCGATACGCGATGCTTT+CGG - chr7_4:45185380-45185399 Msa1156730:intron 50.0%
CCAGGATCCATTGCACTGTT+GGG + chr7_4:45185452-45185471 None:intergenic 50.0%
TCCAGGATCCATTGCACTGT+TGG + chr7_4:45185453-45185472 None:intergenic 50.0%
! TGTACTTGGTGGCCCAACAT+TGG + chr7_4:45185672-45185691 None:intergenic 50.0%
CAACAAGTGTGACACCAAGG+AGG - chr7_4:45185798-45185817 Msa1156730:intron 50.0%
GGAGAACTGCGATGGACAAA+TGG - chr7_4:45185833-45185852 Msa1156730:intron 50.0%
CATTTGCGCCGAACAGTAAC+AGG + chr7_4:45185878-45185897 None:intergenic 50.0%
TAGGTGTTTGGCCCGAGTCA+AGG - chr7_4:45182255-45182274 Msa1156730:five_prime_UTR 55.0%
!! TTACCCCCACGCCATTTTGC+TGG + chr7_4:45182311-45182330 None:intergenic 55.0%
GGGGTGCAAAACCGCACAAT+TGG + chr7_4:45182623-45182642 None:intergenic 55.0%
GCACGTGACTTTGTAGGCCA+CGG - chr7_4:45183088-45183107 Msa1156730:intron 55.0%
!! GGAAATGATGGACCTACCCC+TGG - chr7_4:45183433-45183452 Msa1156730:intron 55.0%
ACACCAGGCGCAGTTACATC+AGG + chr7_4:45184708-45184727 None:intergenic 55.0%
CAGCAGTGCCAGCAACATGA+GGG + chr7_4:45184836-45184855 None:intergenic 55.0%
!! AGCATCGCGTATCGGCTTGT+TGG + chr7_4:45185378-45185397 None:intergenic 55.0%
CCCAACAGTGCAATGGATCC+TGG - chr7_4:45185449-45185468 Msa1156730:intron 55.0%
CACGTGCTGTACGCTGCGAT+GGG + chr7_4:45183075-45183094 None:intergenic 60.0%
TCACGTGCTGTACGCTGCGA+TGG + chr7_4:45183076-45183095 None:intergenic 60.0%
GCCGGTGGAAACTTCGTACC+AGG - chr7_4:45183130-45183149 Msa1156730:intron 60.0%
CAGCCTGATGTAACTGCGCC+TGG - chr7_4:45184702-45184721 Msa1156730:intron 60.0%
CCAGCAGTGCCAGCAACATG+AGG + chr7_4:45184837-45184856 None:intergenic 60.0%
CCTCATGTTGCTGGCACTGC+TGG - chr7_4:45184834-45184853 Msa1156730:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 45179497 45186193 45179497 ID=Msa1156730;Name=Msa1156730
chr7_4 mRNA 45179497 45186193 45179497 ID=Msa1156730-mRNA-1;Parent=Msa1156730;Name=Msa1156730-mRNA-1;_AED=0.05;_eAED=0.05;_QI=1766|1|1|1|0.9|0.81|11|295|285
chr7_4 exon 45179497 45180333 45179497 ID=Msa1156730-mRNA-1:exon:11715;Parent=Msa1156730-mRNA-1
chr7_4 exon 45180769 45180985 45180769 ID=Msa1156730-mRNA-1:exon:11714;Parent=Msa1156730-mRNA-1
chr7_4 exon 45181290 45181497 45181290 ID=Msa1156730-mRNA-1:exon:11713;Parent=Msa1156730-mRNA-1
chr7_4 exon 45181620 45181825 45181620 ID=Msa1156730-mRNA-1:exon:11712;Parent=Msa1156730-mRNA-1
chr7_4 exon 45181936 45182030 45181936 ID=Msa1156730-mRNA-1:exon:11711;Parent=Msa1156730-mRNA-1
chr7_4 exon 45182135 45182678 45182135 ID=Msa1156730-mRNA-1:exon:11710;Parent=Msa1156730-mRNA-1
chr7_4 exon 45183309 45183432 45183309 ID=Msa1156730-mRNA-1:exon:11709;Parent=Msa1156730-mRNA-1
chr7_4 exon 45185200 45185355 45185200 ID=Msa1156730-mRNA-1:exon:11708;Parent=Msa1156730-mRNA-1
chr7_4 exon 45185468 45185565 45185468 ID=Msa1156730-mRNA-1:exon:11707;Parent=Msa1156730-mRNA-1
chr7_4 exon 45185639 45185748 45185639 ID=Msa1156730-mRNA-1:exon:11706;Parent=Msa1156730-mRNA-1
chr7_4 exon 45185870 45186193 45185870 ID=Msa1156730-mRNA-1:exon:11705;Parent=Msa1156730-mRNA-1
chr7_4 five_prime_UTR 45185870 45186193 45185870 ID=Msa1156730-mRNA-1:five_prime_utr;Parent=Msa1156730-mRNA-1
chr7_4 five_prime_UTR 45185639 45185748 45185639 ID=Msa1156730-mRNA-1:five_prime_utr;Parent=Msa1156730-mRNA-1
chr7_4 five_prime_UTR 45185468 45185565 45185468 ID=Msa1156730-mRNA-1:five_prime_utr;Parent=Msa1156730-mRNA-1
chr7_4 five_prime_UTR 45185200 45185355 45185200 ID=Msa1156730-mRNA-1:five_prime_utr;Parent=Msa1156730-mRNA-1
chr7_4 five_prime_UTR 45183309 45183432 45183309 ID=Msa1156730-mRNA-1:five_prime_utr;Parent=Msa1156730-mRNA-1
chr7_4 five_prime_UTR 45182135 45182678 45182135 ID=Msa1156730-mRNA-1:five_prime_utr;Parent=Msa1156730-mRNA-1
chr7_4 five_prime_UTR 45181936 45182030 45181936 ID=Msa1156730-mRNA-1:five_prime_utr;Parent=Msa1156730-mRNA-1
chr7_4 five_prime_UTR 45181620 45181825 45181620 ID=Msa1156730-mRNA-1:five_prime_utr;Parent=Msa1156730-mRNA-1
chr7_4 five_prime_UTR 45181389 45181497 45181389 ID=Msa1156730-mRNA-1:five_prime_utr;Parent=Msa1156730-mRNA-1
chr7_4 CDS 45181290 45181388 45181290 ID=Msa1156730-mRNA-1:cds;Parent=Msa1156730-mRNA-1
chr7_4 CDS 45180769 45180985 45180769 ID=Msa1156730-mRNA-1:cds;Parent=Msa1156730-mRNA-1
chr7_4 CDS 45179792 45180333 45179792 ID=Msa1156730-mRNA-1:cds;Parent=Msa1156730-mRNA-1
chr7_4 three_prime_UTR 45179497 45179791 45179497 ID=Msa1156730-mRNA-1:three_prime_utr;Parent=Msa1156730-mRNA-1
Gene Sequence

>Msa1156730

ATGTCACAAGCAAAAACTTTATATGGAAGAAAGCCTGCTCCAGTTATGGCTTCATTCTCATCTAGAGGACCTAATCAAGTTCAACCTTATATACTCAAGCCTGATGTAACTGCGCCTGGTGTGAACATACTTGCAGCGTATTCATTATTTGCAAGTGCATCTAACTTACCAACAGACAATCGTCGAGGTTTTCGGTTCAATGTAATGCAAGGAACCTCTATGTCTTGCCCTCATGTTGCTGGCACTGCTGGACTTATCAAAACACTTCATCCTAATTGGAGTCCAGCAGCTATTAAATCGGCTATCATGACCACTGCAAGCACAACAGATAACACCAACAAGCCGATACGCGATGCTTTCGGAAAAACTCCAGCAGATCCATTTGCTTATGGTTCAGGACATATTCAACCCAACAGTGCAATGGATCCTGGACTTGTTTATGATCTAAGCATTAAGGATTACTTAAACTTCTTATGTGCCTCTGGATACAACAAGCAACTCATTTCAGCACTTAATTTCAACATGACATTTACTTGTTCAGGAACTTATAGCATAGATGACTTGAATTACCCTTCAATCACATTACCAAATCTTGGGTTGAATGCTATTACTGTCACTCGTACAGTTACCAATGTTGGGCCACCAAGTACATATTTTGCTAAAGCTCAATTGCCTGGATATAAAATTGCTGTTGTACCAAGTTCCTTGAATTTCAAGAAAATAGGTGAAAAGAAGACATTTAAAGTTATTGTGCAAGCAACAAGTGTGACACCAAGGAGGAAATACCAATTTGGAGAACTGCGATGGACAAATGGAAAACACATTGTAAGGAGTCCTGTTACTGTTCGGCGCAAATGA

Protein sequence

>Msa1156730

MSQAKTLYGRKPAPVMASFSSRGPNQVQPYILKPDVTAPGVNILAAYSLFASASNLPTDNRRGFRFNVMQGTSMSCPHVAGTAGLIKTLHPNWSPAAIKSAIMTTASTTDNTNKPIRDAFGKTPADPFAYGSGHIQPNSAMDPGLVYDLSIKDYLNFLCASGYNKQLISALNFNMTFTCSGTYSIDDLNYPSITLPNLGLNAITVTRTVTNVGPPSTYFAKAQLPGYKIAVVPSSLNFKKIGEKKTFKVIVQATSVTPRRKYQFGELRWTNGKHIVRSPVTVRRK*