AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580380 MtrunA17_Chr5g0398901 97.938 582 11 1 1 582 1 581 0.0 1177
Msa0580380 MtrunA17_Chr5g0398951 81.319 91 16 1 242 332 4 93 4.94e-42 146
Msa0580380 MtrunA17_Chr3g0097231 31.651 218 119 6 2 199 11 218 1.07e-19 92.4
Msa0580380 MtrunA17_Chr3g0097231 32.759 116 78 0 393 508 11 126 4.11e-13 72.0
Msa0580380 MtrunA17_Chr1g0166441 36.441 118 75 0 397 514 15 132 3.99e-19 89.0
Msa0580380 MtrunA17_Chr1g0166441 35.354 99 64 0 6 104 15 113 1.12e-13 72.4
Msa0580380 MtrunA17_Chr7g0274241 39.655 116 70 0 2 117 335 450 6.72e-17 83.6
Msa0580380 MtrunA17_Chr7g0274241 34.211 114 75 0 393 506 335 448 1.24e-16 82.8
Msa0580380 MtrunA17_Chr1g0160051 36.937 111 69 1 1 110 180 290 1.77e-16 82.4
Msa0580380 MtrunA17_Chr1g0160051 31.092 119 81 1 385 502 173 291 2.58e-12 69.3
Msa0580380 MtrunA17_Chr5g0397161 35.294 119 77 0 1 119 1 119 2.22e-16 81.3
Msa0580380 MtrunA17_Chr5g0397161 28.205 117 84 0 392 508 1 117 2.59e-11 65.5
Msa0580380 MtrunA17_Chr6g0470241 39.583 96 58 0 1 96 1 96 8.04e-14 73.2
Msa0580380 MtrunA17_Chr6g0470241 26.144 153 110 2 392 543 1 151 3.93e-11 65.1
Msa0580380 MtrunA17_Chr2g0316221 30.476 105 73 0 397 501 466 570 4.86e-13 72.0
Msa0580380 MtrunA17_Chr7g0237741 32.110 109 67 1 2 103 95 203 1.72e-12 68.2
Msa0580380 MtrunA17_Chr7g0237741 27.536 138 85 2 372 502 82 211 5.06e-11 63.5
Msa0580380 MtrunA17_Chr4g0050371 37.374 99 62 0 397 495 492 590 2.57e-12 69.7
Msa0580380 MtrunA17_Chr8g0393041 29.630 135 89 1 367 495 447 581 1.07e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580380 AT1G62740.1 73.639 588 132 4 1 582 1 571 0.0 882
Msa0580380 AT4G12400.2 72.213 583 136 4 1 582 1 558 0.0 882
Msa0580380 AT1G12270.1 73.424 587 136 6 1 582 1 572 0.0 848
Msa0580380 AT4G12400.1 71.481 547 130 4 1 546 1 522 0.0 819
Msa0580380 AT4G12400.1 32.258 186 125 1 392 576 1 186 5.26e-22 100
Msa0580380 AT1G04190.1 40.816 98 58 0 6 103 19 116 7.95e-18 85.5
Msa0580380 AT1G04190.1 39.623 106 64 0 397 502 19 124 1.35e-17 84.7
Msa0580380 AT4G08320.1 31.361 169 112 3 1 168 174 339 4.74e-17 84.3
Msa0580380 AT4G08320.1 33.094 139 86 3 372 508 158 291 8.14e-14 74.3
Msa0580380 AT4G08320.2 37.069 116 72 1 1 115 174 289 9.89e-17 83.2
Msa0580380 AT4G08320.2 33.094 139 86 3 372 508 158 291 7.35e-14 74.3
Msa0580380 AT3G04710.3 40.000 110 66 0 8 117 558 667 6.30e-16 81.6
Msa0580380 AT3G04710.3 30.841 107 74 0 399 505 558 664 2.52e-13 73.6
Msa0580380 AT3G04710.1 40.000 110 66 0 8 117 334 443 7.11e-16 80.9
Msa0580380 AT3G04710.1 30.841 107 74 0 399 505 334 440 1.52e-13 73.6
Msa0580380 AT3G04710.2 40.000 110 66 0 8 117 333 442 7.27e-16 80.9
Msa0580380 AT3G04710.2 30.841 107 74 0 399 505 333 439 1.47e-13 73.6
Msa0580380 AT2G42810.1 26.636 214 135 4 2 199 13 220 2.25e-15 79.3
Msa0580380 AT2G42810.1 31.429 140 96 0 389 528 9 148 7.00e-15 77.8
Msa0580380 AT2G42810.5 26.636 214 135 4 2 199 13 220 2.25e-15 79.3
Msa0580380 AT2G42810.5 31.429 140 96 0 389 528 9 148 7.00e-15 77.8
Msa0580380 AT2G42810.4 26.636 214 135 4 2 199 13 220 2.25e-15 79.3
Msa0580380 AT2G42810.4 31.429 140 96 0 389 528 9 148 7.00e-15 77.8
Msa0580380 AT4G11260.1 36.449 107 68 0 1 107 1 107 6.02e-15 77.0
Msa0580380 AT2G42810.3 31.429 140 96 0 389 528 9 148 7.22e-15 78.2
Msa0580380 AT2G42810.3 33.621 116 77 0 2 117 13 128 1.01e-14 77.4
Msa0580380 AT2G42810.2 31.429 140 96 0 389 528 9 148 7.37e-15 78.2
Msa0580380 AT2G42810.2 33.621 116 77 0 2 117 13 128 1.09e-14 77.4
Msa0580380 AT4G22670.1 36.893 103 65 0 2 104 123 225 8.80e-13 71.2
Msa0580380 AT3G17970.1 35.922 103 66 0 393 495 474 576 3.24e-12 69.7
Msa0580380 AT1G53300.1 28.829 111 79 0 391 501 463 573 6.81e-12 68.9
Msa0580380 AT1G78120.2 29.600 125 87 1 400 523 166 290 6.65e-11 65.5
Msa0580380 AT1G78120.1 29.600 125 87 1 400 523 166 290 7.29e-11 65.5
Msa0580380 AT4G23570.1 27.473 182 118 5 25 202 25 196 7.45e-11 64.3
Msa0580380 AT4G23570.2 27.473 182 118 5 25 202 25 196 7.45e-11 64.3
Msa0580380 AT3G58620.2 26.923 156 97 3 349 502 418 558 7.88e-11 65.5

Find 223 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCTCATCAGCCAAATT+TGG 0.136072 4_1:+85427745 None:intergenic
CAAATACAAATTCAAATTAT+TGG 0.139538 4_1:+85430242 None:intergenic
TTCTACTAGGGTCTGGGGTT+GGG 0.160704 4_1:+85430947 None:intergenic
GATTTCAAGGGTTCATTATT+AGG 0.169330 4_1:+85430456 None:intergenic
CAGCTTCATTGAGTTTCTTC+AGG 0.191835 4_1:+85427809 None:intergenic
AGAATACTTCGATCCAAATT+TGG 0.199740 4_1:-85427758 Msa0580380:CDS
GAGAGAGTGGGTTAGGTTAT+AGG 0.204685 4_1:+85430900 None:intergenic
TTTACTTTGTTGATGTTGAT+TGG 0.217020 4_1:+85430847 None:intergenic
TTGAGTTTCTTCAGGGTGTC+TGG 0.227086 4_1:+85427817 None:intergenic
TTGTTGTTCTAGTTCTTTCT+TGG 0.227451 4_1:+85427780 None:intergenic
AGGTTCATTGCTTAGAAATT+AGG 0.238421 4_1:-85426338 Msa0580380:three_prime_UTR
AGTTGAAATCGAAAGGGTTT+TGG 0.241292 4_1:+85430790 None:intergenic
TTGAATTTGACAATATTATA+TGG 0.247524 4_1:+85425975 None:intergenic
CAGAGAGTTATGCAAGCTTT+TGG 0.262229 4_1:-85430213 Msa0580380:CDS
TCCATCAAATTTACTTCATC+TGG 0.263023 4_1:+85426685 None:intergenic
TTCCGGCACTGATCAGCTTT+TGG 0.271295 4_1:+85426712 None:intergenic
AAATACAAATTCAAATTATT+GGG 0.271371 4_1:+85430243 None:intergenic
GTCCATCACACCCGGGTTCT+TGG 0.290667 4_1:+85426740 None:intergenic
TTACTTTGTTGATGTTGATT+GGG 0.290830 4_1:+85430848 None:intergenic
CATCATGTTTCAACCCTTCC+TGG 0.293057 4_1:+85427242 None:intergenic
GCAGGTATTGGTTGATTTCC+AGG 0.298727 4_1:-85426790 Msa0580380:intron
AGCTGCATGTTACACAAAAC+TGG 0.310459 4_1:-85427395 Msa0580380:CDS
TCTACTAGGGTCTGGGGTTG+GGG 0.311038 4_1:+85430948 None:intergenic
TCCTCCATTGGCTCCGGTTC+CGG 0.312001 4_1:+85430063 None:intergenic
TCCGAACTGGACGGCATATC+AGG 0.312824 4_1:+85430141 None:intergenic
AAGCAAACCTGTCTCATAAC+AGG 0.314328 4_1:+85426888 None:intergenic
TTCCTATTGTGACTTTGATT+TGG 0.317739 4_1:-85426626 Msa0580380:three_prime_UTR
GGCAATGCCTGAAGGTTTAA+AGG 0.321704 4_1:-85427371 Msa0580380:CDS
TCCAGATGAAGTAAATTTGA+TGG 0.333610 4_1:-85426686 Msa0580380:exon
GCTGATGAGGAGAGAGAAAA+AGG 0.335378 4_1:-85427736 Msa0580380:intron
GTATGTCTTGTGTTTGTTGT+AGG 0.335866 4_1:-85426115 Msa0580380:three_prime_UTR
GTTTGTTGTAGGCAGTATTT+TGG 0.336116 4_1:-85426104 Msa0580380:three_prime_UTR
TTAAAGCGTCAGTGTAATTC+TGG 0.337616 4_1:+85430610 None:intergenic
AAAACTGAACCGCACCCTTC+CGG 0.339040 4_1:+85427299 None:intergenic
GTATGTTCCTGTGCAGCCTT+TGG 0.339809 4_1:+85426762 None:intergenic
TCTGCATCCTTTAAACCTTC+AGG 0.340625 4_1:+85427364 None:intergenic
TGTCTCTCCTTCAACTCTTC+AGG 0.344507 4_1:+85427044 None:intergenic
TGGTTATTCAATCTAAATCT+AGG 0.345616 4_1:-85426462 Msa0580380:three_prime_UTR
AATAATGAACCCTTGAAATC+AGG 0.348019 4_1:-85430453 Msa0580380:CDS
TGCATCATCTTCACAAAATC+AGG 0.348278 4_1:+85430282 None:intergenic
GTTCTACTAGGGTCTGGGGT+TGG 0.352820 4_1:+85430946 None:intergenic
TTTGTTGAATAAACGAAAAC+GGG 0.358914 4_1:-85426293 Msa0580380:three_prime_UTR
GGAATACAGGACGTGGTTGG+TGG 0.360993 4_1:+85430659 None:intergenic
AAACTGAACCGCACCCTTCC+GGG 0.362337 4_1:+85427300 None:intergenic
GAACCCCTTCAAGCAATTCC+TGG 0.364967 4_1:+85427212 None:intergenic
TGCGTTTACAATGCAGTAAC+AGG 0.368288 4_1:-85426408 Msa0580380:three_prime_UTR
TTATTCGAAAGCTTTGGAAT+TGG 0.368370 4_1:-85429929 Msa0580380:CDS
GGATAGAGAGAGAGTGGGTT+AGG 0.369650 4_1:+85430893 None:intergenic
TTACTTCATCTGGACAATTC+CGG 0.371932 4_1:+85426695 None:intergenic
TAATTTGAATTTGTATTTGA+AGG 0.375764 4_1:-85430238 Msa0580380:CDS
TAACCGTGCTGCTGTATACT+TGG 0.383148 4_1:-85429881 Msa0580380:CDS
CTGTAACCCTTTGACCAATC+AGG 0.384513 4_1:+85430558 None:intergenic
CGTCTCGGTGCCGCTCATCT+TGG 0.384527 4_1:-85430534 Msa0580380:CDS
ATTGGCTCCGGTTCCGGCTC+AGG 0.388295 4_1:+85430069 None:intergenic
GGAGAATGCAGCGTTGCCTT+TGG 0.390754 4_1:+85430737 None:intergenic
AAGAGAGGATAGAGAGAGAG+TGG 0.392842 4_1:+85430887 None:intergenic
TCTGCATTATTCGAAAGCTT+TGG 0.393752 4_1:-85429935 Msa0580380:CDS
TCCGCCTGCTTTGCCACCTC+AGG 0.396836 4_1:+85430099 None:intergenic
GTCTCATAACAGGGTCTTGA+AGG 0.401205 4_1:+85426898 None:intergenic
TTCTAGGCCACGTTCTGCGC+CGG 0.406464 4_1:-85430394 Msa0580380:CDS
TGAAGGATGTTCTGAATCTC+TGG 0.407523 4_1:+85426915 None:intergenic
TCTTCAGGGTGTCTGGGTTA+CGG 0.408287 4_1:+85427824 None:intergenic
TAGAGAGTTCTACTAGGGTC+TGG 0.408614 4_1:+85430940 None:intergenic
ATTTAGAGCAACGACCTTGA+TGG 0.412320 4_1:+85426177 None:intergenic
CAGCGGATCGGTTGGAATAC+AGG 0.412654 4_1:+85430646 None:intergenic
TGAAGATAAACCCTAGTTGT+AGG 0.413840 4_1:+85430309 None:intergenic
GTGTAATGCTTAATAGCTTC+AGG 0.414719 4_1:+85427549 None:intergenic
GCGCCGGGTGCCAATCCGTT+TGG 0.416911 4_1:-85430378 Msa0580380:CDS
TGGATTGGAAGTACAATAGT+TGG 0.420764 4_1:-85426590 Msa0580380:three_prime_UTR
TCTAGGCCACGTTCTGCGCC+GGG 0.422100 4_1:-85430393 Msa0580380:CDS
GATTTGGTATTGGAATAGAT+TGG 0.424663 4_1:-85426610 Msa0580380:three_prime_UTR
GAAAGAATATGAAAAGGCTT+TGG 0.427879 4_1:-85427272 Msa0580380:CDS
ATCGGCTAAACCTGATTTCA+AGG 0.428004 4_1:+85430443 None:intergenic
AGCTTCATTGAGTTTCTTCA+GGG 0.428316 4_1:+85427810 None:intergenic
TTGTGACTTTGATTTGGTAT+TGG 0.428426 4_1:-85426620 Msa0580380:three_prime_UTR
GCTGTTTCAGCTTACAAGAA+AGG 0.435873 4_1:-85430492 Msa0580380:CDS
TGCTGCTGTATACTTGGAAA+TGG 0.437857 4_1:-85429875 Msa0580380:CDS
TACTTTGTTGATGTTGATTG+GGG 0.441458 4_1:+85430849 None:intergenic
TGAACCTGAGGTGGCAAAGC+AGG 0.443025 4_1:-85430103 Msa0580380:CDS
CTCAAACCTGATTGGTCAAA+GGG 0.450036 4_1:-85430564 Msa0580380:CDS
TGAAGAGTTGAAGGAGAGAC+AGG 0.450058 4_1:-85427042 Msa0580380:intron
TGAGTTTCTTCAGGGTGTCT+GGG 0.451649 4_1:+85427818 None:intergenic
GTTTGTTGAATAAACGAAAA+CGG 0.451756 4_1:-85426294 Msa0580380:three_prime_UTR
GGTTGAGCCTGAGCCGGAAC+CGG 0.452769 4_1:-85430076 Msa0580380:CDS
CTGTTTCAGCTTACAAGAAA+GGG 0.455044 4_1:-85430491 Msa0580380:CDS
GCACCTCTCTTTGCAAGAAA+AGG 0.455427 4_1:-85426358 Msa0580380:three_prime_UTR
GGAGGTGGCTGATGAGGAGA+AGG 0.455482 4_1:-85430043 Msa0580380:CDS
TCATCAGCCACCTCCTCCAT+TGG 0.457433 4_1:+85430051 None:intergenic
TACCAAATCAAAGTCACAAT+AGG 0.459976 4_1:+85426624 None:intergenic
TGGATCTTGTCCATCACACC+CGG 0.459995 4_1:+85426732 None:intergenic
GAGGAAGGCTGAGGCGCAGA+AGG 0.460304 4_1:-85430010 Msa0580380:CDS
GGCTTTAGCTTCGTCGGCCA+TGG 0.464637 4_1:+85430758 None:intergenic
TCAAGACCCTGTTATGAGAC+AGG 0.467657 4_1:-85426895 Msa0580380:intron
CTTAATGTTAAGATTGGAAG+AGG 0.468931 4_1:-85430183 Msa0580380:CDS
AGCTCTCTTCCTCTCCGAAC+TGG 0.469541 4_1:+85430128 None:intergenic
GCCTGATATGCCGTCCAGTT+CGG 0.472399 4_1:-85430142 Msa0580380:CDS
GTCGTGTGCATGCTTTCAAT+TGG 0.473573 4_1:-85426482 Msa0580380:three_prime_UTR
AGGAACTGCCATGGGTAAAA+CGG 0.477231 4_1:-85427908 Msa0580380:CDS
CGATCCAAATTTGGCTGATG+AGG 0.478253 4_1:-85427749 Msa0580380:CDS
GGATTGGAAGTACAATAGTT+GGG 0.482953 4_1:-85426589 Msa0580380:three_prime_UTR
TGTAACTCCTGAAGAGTTGA+AGG 0.487207 4_1:-85427051 Msa0580380:CDS
TTTAGAGCAACGACCTTGAT+GGG 0.487649 4_1:+85426178 None:intergenic
AGAGAGTTCTACTAGGGTCT+GGG 0.488562 4_1:+85430941 None:intergenic
TTTCATGAAAGAATATGAAA+AGG 0.488950 4_1:-85427278 Msa0580380:CDS
GAAGTAAATTTGATGGAAGA+TGG 0.489595 4_1:-85426679 Msa0580380:exon
TTGAACAATTCAGTCAGAAA+AGG 0.492536 4_1:-85426020 Msa0580380:three_prime_UTR
TACTGCTGATCCTACAACTA+GGG 0.494571 4_1:-85430319 Msa0580380:CDS
GGAAAATCCAAAGGCTGCAC+AGG 0.497888 4_1:-85426769 Msa0580380:CDS
GCGCAGAAGGAGAAGGAGGC+TGG 0.498289 4_1:-85429997 Msa0580380:CDS
GGTATTGGAATAGATTGGAT+TGG 0.499629 4_1:-85426605 Msa0580380:three_prime_UTR
GTTAACTAGAGAGTTCTACT+AGG 0.502412 4_1:+85430934 None:intergenic
ACCCTTCCGGGTATAACCCT+TGG 0.502655 4_1:+85427312 None:intergenic
GCCACCTCCTCCATTGGCTC+CGG 0.504102 4_1:+85430057 None:intergenic
TGAGCCGGAACCGGAGCCAA+TGG 0.504535 4_1:-85430067 Msa0580380:CDS
ATCCAAAAGCTGATCAGTGC+CGG 0.507708 4_1:-85426714 Msa0580380:CDS
TATAACCCTTGGTGAAGGTC+GGG 0.507749 4_1:+85427323 None:intergenic
ACCGGAGCCAATGGAGGAGG+TGG 0.508880 4_1:-85430058 Msa0580380:CDS
AACAACCAGGAATTGCTTGA+AGG 0.509120 4_1:-85427217 Msa0580380:CDS
GCCTTTGGCTTTAGCTTCGT+CGG 0.510652 4_1:+85430752 None:intergenic
GTAAGTTTCGCCCACATCTC+CGG 0.511152 4_1:+85430339 None:intergenic
GGCGGAGGTTGAGCCTGAGC+CGG 0.511864 4_1:-85430082 Msa0580380:CDS
AGGAGAAGGAAGTGAAGCAG+AGG 0.515007 4_1:-85430029 Msa0580380:CDS
GATGATGCAAGATATTCAAA+AGG 0.517290 4_1:-85430268 Msa0580380:CDS
AGGAGTTACATCCCCACGAC+TGG 0.518165 4_1:+85427064 None:intergenic
TACCAAGAACCCGGGTGTGA+TGG 0.520879 4_1:-85426742 Msa0580380:CDS
AGCGTGAGCAGCGGATCGGT+TGG 0.522057 4_1:+85430638 None:intergenic
AGAGAGGATAGAGAGAGAGT+GGG 0.526148 4_1:+85430888 None:intergenic
GTATAACCCTTGGTGAAGGT+CGG 0.529921 4_1:+85427322 None:intergenic
TTGCATAAAAGATTGTGATA+AGG 0.530466 4_1:-85427995 Msa0580380:CDS
AATACAGGACGTGGTTGGTG+GGG 0.535814 4_1:+85430661 None:intergenic
ATACAGGACGTGGTTGGTGG+GGG 0.536596 4_1:+85430662 None:intergenic
GCAAGAGCTTTGACAAGGAA+AGG 0.536678 4_1:-85427928 Msa0580380:CDS
AATGGAGGAGGTGGCTGATG+AGG 0.538534 4_1:-85430049 Msa0580380:CDS
AGCAGCACGGTTAGTGAGGA+AGG 0.539890 4_1:+85429891 None:intergenic
TGAGGTGGCAAAGCAGGCGG+AGG 0.540052 4_1:-85430097 Msa0580380:CDS
CCGTCGAACTCAAACCTGAT+TGG 0.540548 4_1:-85430572 Msa0580380:CDS
AAAAGCATCACCAAACGGAT+TGG 0.541023 4_1:+85430368 None:intergenic
GAATACAGGACGTGGTTGGT+GGG 0.541180 4_1:+85430660 None:intergenic
GATCGGAGTTGAAATCGAAA+GGG 0.541255 4_1:+85430784 None:intergenic
GGGTTATACCCGGAAGGGTG+CGG 0.542682 4_1:-85427308 Msa0580380:CDS
CCAATCAGGTTTGAGTTCGA+CGG 0.546460 4_1:+85430572 None:intergenic
GGCTGAGGCGCAGAAGGAGA+AGG 0.547847 4_1:-85430004 Msa0580380:CDS
ACAACCAGGAATTGCTTGAA+GGG 0.548142 4_1:-85427216 Msa0580380:CDS
GAAACTCAATGAAGCTGAGA+AGG 0.551120 4_1:-85427803 Msa0580380:CDS
GCTGCTGTATACTTGGAAAT+GGG 0.551340 4_1:-85429874 Msa0580380:CDS
GGCAACGCTGCATTCTCCTC+CGG 0.551432 4_1:-85430732 Msa0580380:CDS
GGAACCGGAGCCAATGGAGG+AGG 0.554085 4_1:-85430061 Msa0580380:CDS
AGCTTTGGAATTGGATGATG+AGG 0.555608 4_1:-85429920 Msa0580380:CDS
GAAGAGAGCTGCTGAACCTG+AGG 0.556646 4_1:-85430115 Msa0580380:CDS
TCCTCATTGAACAATTGAGT+CGG 0.556777 4_1:-85426070 Msa0580380:three_prime_UTR
AGATCGGAGTTGAAATCGAA+AGG 0.559867 4_1:+85430783 None:intergenic
ATAAACGAAAACGGGGAAAG+TGG 0.560542 4_1:-85426285 Msa0580380:three_prime_UTR
AAATTAATAGAACCAGTCGT+GGG 0.560810 4_1:-85427076 Msa0580380:CDS
ACTCAAACCTGATTGGTCAA+AGG 0.563775 4_1:-85430565 Msa0580380:CDS
TCAAAGGGTTACAGCCGTCT+CGG 0.565098 4_1:-85430549 Msa0580380:CDS
ATAAGTTATCATGAGTGAGA+AGG 0.565958 4_1:-85426156 Msa0580380:three_prime_UTR
TGGAAGAGGTGGTGATGATG+TGG 0.569802 4_1:-85430169 Msa0580380:CDS
TGTGATAAGGCTGTTGAAAG+AGG 0.569985 4_1:-85427982 Msa0580380:CDS
TAATGCTGCGTATAAGAAGA+AGG 0.570012 4_1:-85429974 Msa0580380:CDS
TCACCAAACGGATTGGCACC+CGG 0.570986 4_1:+85430375 None:intergenic
CAAGATGAGCGGCACCGAGA+CGG 0.571843 4_1:+85430535 None:intergenic
TGTATACTTGGAAATGGGAA+AGG 0.572009 4_1:-85429869 Msa0580380:intron
TTGGCACCCGGCGCAGAACG+TGG 0.574389 4_1:+85430387 None:intergenic
GAGAGTGAGGAATTGAAGAG+AGG 0.574842 4_1:+85430872 None:intergenic
CACCAAGGGTTATACCCGGA+AGG 0.575257 4_1:-85427314 Msa0580380:CDS
CTTTGGAAACATACCAGGAA+GGG 0.575984 4_1:-85427255 Msa0580380:CDS
AATTGCTTGAAGGGGTTCGA+AGG 0.576444 4_1:-85427207 Msa0580380:intron
TTAACTAGAGAGTTCTACTA+GGG 0.580605 4_1:+85430935 None:intergenic
GCTGCATGTTACACAAAACT+GGG 0.580641 4_1:-85427394 Msa0580380:CDS
ACCTGAGGTGGCAAAGCAGG+CGG 0.581309 4_1:-85430100 Msa0580380:CDS
CCGGGTATAACCCTTGGTGA+AGG 0.581722 4_1:+85427318 None:intergenic
GAAGGAAGTGAAGCAGAGGA+AGG 0.582452 4_1:-85430025 Msa0580380:CDS
AGTGAAGCAGAGGAAGGCTG+AGG 0.583668 4_1:-85430019 Msa0580380:CDS
TTCGTCGGCCATGGATAGAT+CGG 0.583671 4_1:+85430767 None:intergenic
TGAGGCGCAGAAGGAGAAGG+AGG 0.586945 4_1:-85430001 Msa0580380:CDS
ATACAGCAGCACGGTTAGTG+AGG 0.589306 4_1:+85429887 None:intergenic
GAGAGCTGCTGAACCTGAGG+TGG 0.589705 4_1:-85430112 Msa0580380:CDS
CAAATTAATAGAACCAGTCG+TGG 0.592861 4_1:-85427077 Msa0580380:CDS
ACAAGGAAAGGAACTGCCAT+GGG 0.594542 4_1:-85427916 Msa0580380:CDS
GACAAGGAAAGGAACTGCCA+TGG 0.596247 4_1:-85427917 Msa0580380:CDS
GCCGGAACCGGAGCCAATGG+AGG 0.596557 4_1:-85430064 Msa0580380:CDS
ATGTCGAGCTGCTTGCTATG+AGG 0.597876 4_1:-85426253 Msa0580380:three_prime_UTR
TTACTGCTGATCCTACAACT+AGG 0.598575 4_1:-85430320 Msa0580380:CDS
AAAGGCTTTGGAAACATACC+AGG 0.604647 4_1:-85427260 Msa0580380:CDS
ACCAAGGGTTATACCCGGAA+GGG 0.604794 4_1:-85427313 Msa0580380:CDS
AATGTTAAGATTGGAAGAGG+TGG 0.604956 4_1:-85430180 Msa0580380:CDS
TCGGCTAAACCTGATTTCAA+GGG 0.605511 4_1:+85430444 None:intergenic
GAGAAGCGTGAGCAGCGGAT+CGG 0.606528 4_1:+85430634 None:intergenic
GATGGCGGTTGCGAAATCGC+CGG 0.612453 4_1:+85430713 None:intergenic
TTTCAACTCCGATCTATCCA+TGG 0.612599 4_1:-85430775 Msa0580380:exon
CAACCAGGAATTGCTTGAAG+GGG 0.617312 4_1:-85427215 Msa0580380:CDS
TGATTTCCAGGAAAATCCAA+AGG 0.618569 4_1:-85426778 Msa0580380:CDS
GCTTTGGAAACATACCAGGA+AGG 0.619719 4_1:-85427256 Msa0580380:CDS
ACAGGAACATACCAAGAACC+CGG 0.627654 4_1:-85426751 Msa0580380:CDS
CTTGACCCGACCTTCACCAA+GGG 0.628031 4_1:-85427328 Msa0580380:CDS
CAGGCAATACGAGTCTCTGT+AGG 0.628713 4_1:-85426389 Msa0580380:three_prime_UTR
ATCGGTTGGAATACAGGACG+TGG 0.632535 4_1:+85430652 None:intergenic
GCCGACGAAGCTAAAGCCAA+AGG 0.634082 4_1:-85430753 Msa0580380:CDS
CTCTTCCTCTCCGAACTGGA+CGG 0.634577 4_1:+85430132 None:intergenic
GGCGGTTGCGAAATCGCCGG+AGG 0.634986 4_1:+85430716 None:intergenic
CCTTCACCAAGGGTTATACC+CGG 0.641665 4_1:-85427318 Msa0580380:CDS
ACCGACTCAATTGTTCAATG+AGG 0.643351 4_1:+85426069 None:intergenic
ACTTTGTTGATGTTGATTGG+GGG 0.644256 4_1:+85430850 None:intergenic
TGATGGCATCTGAGAAGTGA+CGG 0.645347 4_1:+85430691 None:intergenic
GTTGGAATACAGGACGTGGT+TGG 0.650861 4_1:+85430656 None:intergenic
GAGAGTTCTACTAGGGTCTG+GGG 0.653088 4_1:+85430942 None:intergenic
GGATCTTGTCCATCACACCC+GGG 0.653989 4_1:+85426733 None:intergenic
AGCAAACCTGTCTCATAACA+GGG 0.656878 4_1:+85426889 None:intergenic
GAAACATGATGCAAACAACC+AGG 0.657221 4_1:-85427230 Msa0580380:CDS
GCTTGACCCGACCTTCACCA+AGG 0.659770 4_1:-85427329 Msa0580380:CDS
AATTAATAGAACCAGTCGTG+GGG 0.662286 4_1:-85427075 Msa0580380:CDS
ATCTGAGAAGTGACGGATGG+CGG 0.664337 4_1:+85430698 None:intergenic
CTGGAGAGAAGCGTGAGCAG+CGG 0.667719 4_1:+85430629 None:intergenic
GGCATCTGAGAAGTGACGGA+TGG 0.670607 4_1:+85430695 None:intergenic
TGATAGCAAGAGCTTTGACA+AGG 0.676277 4_1:-85427933 Msa0580380:CDS
CAGGAACATACCAAGAACCC+GGG 0.680404 4_1:-85426750 Msa0580380:CDS
TAGGTGCAAGTGTAATGTTG+TGG 0.681227 4_1:-85426319 Msa0580380:three_prime_UTR
TTTCCAAGTATACAGCAGCA+CGG 0.692729 4_1:+85429878 None:intergenic
CTGCATGTTACACAAAACTG+GGG 0.696032 4_1:-85427393 Msa0580380:CDS
TTGAGAAAGACCAAGATGAG+CGG 0.707072 4_1:+85430524 None:intergenic
TTGTTGAATAAACGAAAACG+GGG 0.715300 4_1:-85426292 Msa0580380:three_prime_UTR
TGCATGTTACACAAAACTGG+GGG 0.723034 4_1:-85427392 Msa0580380:CDS
ATATGCCGTCCAGTTCGGAG+AGG 0.733223 4_1:-85430137 Msa0580380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACAAATTCAAATTATT+GGG + chr4_1:85426654-85426673 None:intergenic 10.0%
!! TTTGTCAAAAATATATAAAT+AGG + chr4_1:85427061-85427080 None:intergenic 10.0%
!! TATTATTATGATATATGTAT+TGG - chr4_1:85427729-85427748 Msa0580380:intron 10.0%
!! CAAATACAAATTCAAATTAT+TGG + chr4_1:85426655-85426674 None:intergenic 15.0%
!! TAATTTGAATTTGTATTTGA+AGG - chr4_1:85426656-85426675 Msa0580380:three_prime_UTR 15.0%
!! TTTAATTGGAAATAGTTAAA+AGG + chr4_1:85427383-85427402 None:intergenic 15.0%
!! AAGTCTAATAAAGAAAATAA+TGG + chr4_1:85428164-85428183 None:intergenic 15.0%
!! TCATAAATATCTAATACTAT+TGG + chr4_1:85428555-85428574 None:intergenic 15.0%
!! TTGAATTTGACAATATTATA+TGG + chr4_1:85430922-85430941 None:intergenic 15.0%
!!! AACAAAGTAATGTATTTTCA+TGG + chr4_1:85427481-85427500 None:intergenic 20.0%
!!! ACATTACTTTGTTTTTTATG+TGG - chr4_1:85427488-85427507 Msa0580380:intron 20.0%
!!! CATTACTTTGTTTTTTATGT+GGG - chr4_1:85427489-85427508 Msa0580380:intron 20.0%
!!! ATTAAACATACTTTTGTTTG+TGG - chr4_1:85427619-85427638 Msa0580380:intron 20.0%
!!! TTAAACATACTTTTGTTTGT+GGG - chr4_1:85427620-85427639 Msa0580380:intron 20.0%
!! TAGATAAATTCTTCAACATT+TGG + chr4_1:85427781-85427800 None:intergenic 20.0%
!! TTGGATAAAAGAAGTAAAAA+AGG - chr4_1:85427982-85428001 Msa0580380:CDS 20.0%
!! TGGATAAAAGAAGTAAAAAA+GGG - chr4_1:85427983-85428002 Msa0580380:CDS 20.0%
!! TAAATATCTAATACTATTGG+AGG + chr4_1:85428552-85428571 None:intergenic 20.0%
!!! ATAGGATACAAATTTTACTA+TGG - chr4_1:85428746-85428765 Msa0580380:intron 20.0%
!!! GTTTTTTAATGTTAAGTCAA+GGG - chr4_1:85428839-85428858 Msa0580380:intron 20.0%
!!! ATTATTACCTTAGGATTTTT+CGG + chr4_1:85429390-85429409 None:intergenic 20.0%
!! TAATAATACTCTTTGAATTC+AGG - chr4_1:85429403-85429422 Msa0580380:intron 20.0%
!! TTTCATGAAAGAATATGAAA+AGG - chr4_1:85429616-85429635 Msa0580380:intron 20.0%
!!! CTGTATTTTGAATATTTTTC+AGG - chr4_1:85429939-85429958 Msa0580380:CDS 20.0%
!!! ATTTTGACTTGTTTTGTTTT+TGG - chr4_1:85430330-85430349 Msa0580380:CDS 20.0%
!!! ATCTTTTCTTTGATTTTGTT+TGG - chr4_1:85430457-85430476 Msa0580380:CDS 20.0%
!! ATAATAAAAAAAACCCATCA+AGG - chr4_1:85430703-85430722 Msa0580380:CDS 20.0%
!! TTACTTTGTTGATGTTGATT+GGG + chr4_1:85426049-85426068 None:intergenic 25.0%
! TTTACTTTGTTGATGTTGAT+TGG + chr4_1:85426050-85426069 None:intergenic 25.0%
!! GTTTTGCTTAATGTTAAGAT+TGG - chr4_1:85426705-85426724 Msa0580380:CDS 25.0%
! ACTTGCTTAGTTATAGTATA+TGG - chr4_1:85427211-85427230 Msa0580380:CDS 25.0%
!!! TGTAACACTTTTTCAAGTAT+GGG + chr4_1:85427284-85427303 None:intergenic 25.0%
!!! ATGTAACACTTTTTCAAGTA+TGG + chr4_1:85427285-85427304 None:intergenic 25.0%
!! TTGATAGTACATCAATTCAA+TGG + chr4_1:85427421-85427440 None:intergenic 25.0%
!!! AACTGTTTTTTTATGAAAGC+TGG - chr4_1:85427575-85427594 Msa0580380:CDS 25.0%
!! AGTCTTGTAAATGAATGTTT+GGG - chr4_1:85427681-85427700 Msa0580380:intron 25.0%
! ATAAATTCTTCAACATTTGG+AGG + chr4_1:85427778-85427797 None:intergenic 25.0%
! CCTATAAACTCCTAATTAAA+GGG + chr4_1:85427942-85427961 None:intergenic 25.0%
! TCCTATAAACTCCTAATTAA+AGG + chr4_1:85427943-85427962 None:intergenic 25.0%
!!! TTTTTCTGGGAGAATATTAA+GGG + chr4_1:85428229-85428248 None:intergenic 25.0%
! TCTTAGAAATTCTTTAATCG+TGG - chr4_1:85428391-85428410 Msa0580380:intron 25.0%
! ATATTATTGGGGTTGTTAAA+GGG + chr4_1:85428443-85428462 None:intergenic 25.0%
! AATATTATTGGGGTTGTTAA+AGG + chr4_1:85428444-85428463 None:intergenic 25.0%
! CAGTCTTGAAAATATTATTG+GGG + chr4_1:85428454-85428473 None:intergenic 25.0%
! GCAGTCTTGAAAATATTATT+GGG + chr4_1:85428455-85428474 None:intergenic 25.0%
! AGCAGTCTTGAAAATATTAT+TGG + chr4_1:85428456-85428475 None:intergenic 25.0%
!! TCAGAGTATTATGCATATAA+CGG + chr4_1:85428506-85428525 None:intergenic 25.0%
!! GAACTTGTCAAATTTTACTA+TGG - chr4_1:85428680-85428699 Msa0580380:intron 25.0%
! TATGGTTTGAGTGTTTAAAT+AGG - chr4_1:85428698-85428717 Msa0580380:intron 25.0%
! TTGAGTGTTTAAATAGGATT+AGG - chr4_1:85428704-85428723 Msa0580380:intron 25.0%
! TATGGTTTGAGTGTTTAAAT+AGG - chr4_1:85428698-85428717 Msa0580380:intron 25.0%
! TTGAGTGTTTAAATAGGATT+AGG - chr4_1:85428704-85428723 Msa0580380:intron 25.0%
! ATAGGAAGAGAAAAATCTAA+GGG - chr4_1:85428817-85428836 Msa0580380:intron 25.0%
!!! GGTTTTTTAATGTTAAGTCA+AGG - chr4_1:85428838-85428857 Msa0580380:intron 25.0%
! AGATTCAAGGAATATTGAAT+TGG + chr4_1:85428865-85428884 None:intergenic 25.0%
! TTGCATAAAAGATTGTGATA+AGG - chr4_1:85428899-85428918 Msa0580380:intron 25.0%
! AAACAATAATGTGGAAATAG+AGG + chr4_1:85429243-85429262 None:intergenic 25.0%
! ATTGAGTCAAAACAATAATG+TGG + chr4_1:85429252-85429271 None:intergenic 25.0%
!! TTATTACCTTAGGATTTTTC+GGG + chr4_1:85429389-85429408 None:intergenic 25.0%
!!! TCAAAGAGTATTATTACCTT+AGG + chr4_1:85429399-85429418 None:intergenic 25.0%
! GAAATATTAAACACATTGCA+GGG + chr4_1:85429735-85429754 None:intergenic 25.0%
!!! ATATTTCCAGTTTCCTTTTT+TGG - chr4_1:85429748-85429767 Msa0580380:intron 25.0%
!!! TTTGAATATTTTTCAGGCTA+AGG - chr4_1:85429945-85429964 Msa0580380:CDS 25.0%
! GCAATAAGATGTGTTTATAA+TGG - chr4_1:85430069-85430088 Msa0580380:CDS 25.0%
! TAAGATGTGTTTATAATGGT+TGG - chr4_1:85430073-85430092 Msa0580380:CDS 25.0%
!! GTTTGTTGAATAAACGAAAA+CGG - chr4_1:85430600-85430619 Msa0580380:CDS 25.0%
! TTTGTTGAATAAACGAAAAC+GGG - chr4_1:85430601-85430620 Msa0580380:CDS 25.0%
TTAACTAGAGAGTTCTACTA+GGG + chr4_1:85425962-85425981 None:intergenic 30.0%
! TACTTTGTTGATGTTGATTG+GGG + chr4_1:85426048-85426067 None:intergenic 30.0%
ATAGGAAGAAGAAGAAGAAA+GGG + chr4_1:85426074-85426093 None:intergenic 30.0%
GATTTCAAGGGTTCATTATT+AGG + chr4_1:85426441-85426460 None:intergenic 30.0%
AATAATGAACCCTTGAAATC+AGG - chr4_1:85426441-85426460 Msa0580380:three_prime_UTR 30.0%
GATGATGCAAGATATTCAAA+AGG - chr4_1:85426626-85426645 Msa0580380:three_prime_UTR 30.0%
CTTAATGTTAAGATTGGAAG+AGG - chr4_1:85426711-85426730 Msa0580380:CDS 30.0%
!! TTATTCGAAAGCTTTGGAAT+TGG - chr4_1:85426965-85426984 Msa0580380:intron 30.0%
! TTAGTCTAGTTTCATTGCTA+AGG - chr4_1:85427159-85427178 Msa0580380:intron 30.0%
!!! GTAACACTTTTTCAAGTATG+GGG + chr4_1:85427283-85427302 None:intergenic 30.0%
!!! GTTAAACACTTTTTCACCTA+GGG + chr4_1:85427327-85427346 None:intergenic 30.0%
!!! AGTTAAACACTTTTTCACCT+AGG + chr4_1:85427328-85427347 None:intergenic 30.0%
! ATTCTCATGGGGTTTTTAAT+TGG + chr4_1:85427397-85427416 None:intergenic 30.0%
AATTCAATGGAATTCTCATG+GGG + chr4_1:85427408-85427427 None:intergenic 30.0%
CAATTCAATGGAATTCTCAT+GGG + chr4_1:85427409-85427428 None:intergenic 30.0%
TCAATTCAATGGAATTCTCA+TGG + chr4_1:85427410-85427429 None:intergenic 30.0%
GTATATGAACCAAATTGAGA+AGG - chr4_1:85427441-85427460 Msa0580380:intron 30.0%
GTATGTTTAATCACACACTT+AGG + chr4_1:85427610-85427629 None:intergenic 30.0%
! GAGTCTTGTAAATGAATGTT+TGG - chr4_1:85427680-85427699 Msa0580380:intron 30.0%
AGGAAATGAAAATGGTAGAA+AGG + chr4_1:85427895-85427914 None:intergenic 30.0%
TAAAAGGGAGGAAATGAAAA+TGG + chr4_1:85427903-85427922 None:intergenic 30.0%
CCCTTTAATTAGGAGTTTAT+AGG - chr4_1:85427939-85427958 Msa0580380:CDS 30.0%
GACTAAAACCCTAAAATATG+CGG - chr4_1:85428070-85428089 Msa0580380:intron 30.0%
ACTAAAACCCTAAAATATGC+GGG - chr4_1:85428071-85428090 Msa0580380:intron 30.0%
! TTAAGTTCCCGCATATTTTA+GGG + chr4_1:85428081-85428100 None:intergenic 30.0%
!! TTTAAGTTCCCGCATATTTT+AGG + chr4_1:85428082-85428101 None:intergenic 30.0%
GGATCGAAATGAAAATCTTA+TGG + chr4_1:85428208-85428227 None:intergenic 30.0%
!! CTTTTTCTGGGAGAATATTA+AGG + chr4_1:85428230-85428249 None:intergenic 30.0%
TAGTATCCAAAACATAACAG+CGG - chr4_1:85428618-85428637 Msa0580380:intron 30.0%
GATAGGAAGAGAAAAATCTA+AGG - chr4_1:85428816-85428835 Msa0580380:intron 30.0%
!! TTGTTGTTCTAGTTCTTTCT+TGG + chr4_1:85429117-85429136 None:intergenic 30.0%
AGAATACTTCGATCCAAATT+TGG - chr4_1:85429136-85429155 Msa0580380:intron 30.0%
TAATACTCTTTGAATTCAGG+TGG - chr4_1:85429406-85429425 Msa0580380:intron 30.0%
ATTCAGATAGCATAACCATA+AGG + chr4_1:85429433-85429452 None:intergenic 30.0%
TACTATAAGCCTGAAAGAAA+TGG + chr4_1:85429475-85429494 None:intergenic 30.0%
GAAAGAATATGAAAAGGCTT+TGG - chr4_1:85429622-85429641 Msa0580380:intron 30.0%
! TTCGAAGGTACATATCATAT+TGG - chr4_1:85429702-85429721 Msa0580380:intron 30.0%
GGAAATATTAAACACATTGC+AGG + chr4_1:85429736-85429755 None:intergenic 30.0%
ACAACTGAAATGGATATACA+TGG + chr4_1:85429791-85429810 None:intergenic 30.0%
AAATTAATAGAACCAGTCGT+GGG - chr4_1:85429818-85429837 Msa0580380:intron 30.0%
ATAAACACATCTTATTGCTG+TGG + chr4_1:85430067-85430086 None:intergenic 30.0%
TCCAGATGAAGTAAATTTGA+TGG - chr4_1:85430208-85430227 Msa0580380:CDS 30.0%
TCCATCAAATTTACTTCATC+TGG + chr4_1:85430212-85430231 None:intergenic 30.0%
GAAGTAAATTTGATGGAAGA+TGG - chr4_1:85430215-85430234 Msa0580380:CDS 30.0%
TTCCTATTGTGACTTTGATT+TGG - chr4_1:85430268-85430287 Msa0580380:CDS 30.0%
TACCAAATCAAAGTCACAAT+AGG + chr4_1:85430273-85430292 None:intergenic 30.0%
!! TTGTGACTTTGATTTGGTAT+TGG - chr4_1:85430274-85430293 Msa0580380:CDS 30.0%
! GATTTGGTATTGGAATAGAT+TGG - chr4_1:85430284-85430303 Msa0580380:CDS 30.0%
AGGTTCATTGCTTAGAAATT+AGG - chr4_1:85430556-85430575 Msa0580380:CDS 30.0%
TTGTTGAATAAACGAAAACG+GGG - chr4_1:85430602-85430621 Msa0580380:CDS 30.0%
ATAAGTTATCATGAGTGAGA+AGG - chr4_1:85430738-85430757 Msa0580380:CDS 30.0%
TTGAACAATTCAGTCAGAAA+AGG - chr4_1:85430874-85430893 Msa0580380:five_prime_UTR 30.0%
GTTAACTAGAGAGTTCTACT+AGG + chr4_1:85425963-85425982 None:intergenic 35.0%
! ACTTTGTTGATGTTGATTGG+GGG + chr4_1:85426047-85426066 None:intergenic 35.0%
TAGGAAGAAGAAGAAGAAAG+GGG + chr4_1:85426073-85426092 None:intergenic 35.0%
GATAGGAAGAAGAAGAAGAA+AGG + chr4_1:85426075-85426094 None:intergenic 35.0%
! TTGAAATCGAAAGGGTTTTG+GGG + chr4_1:85426105-85426124 None:intergenic 35.0%
! GTTGAAATCGAAAGGGTTTT+GGG + chr4_1:85426106-85426125 None:intergenic 35.0%
! AGTTGAAATCGAAAGGGTTT+TGG + chr4_1:85426107-85426126 None:intergenic 35.0%
! TTAAAGCGTCAGTGTAATTC+TGG + chr4_1:85426287-85426306 None:intergenic 35.0%
CTGTTTCAGCTTACAAGAAA+GGG - chr4_1:85426403-85426422 Msa0580380:three_prime_UTR 35.0%
TGAAGATAAACCCTAGTTGT+AGG + chr4_1:85426588-85426607 None:intergenic 35.0%
TGCATCATCTTCACAAAATC+AGG + chr4_1:85426615-85426634 None:intergenic 35.0%
! AGAGAGTTATGCAAGCTTTT+GGG - chr4_1:85426682-85426701 Msa0580380:exon 35.0%
AATGTTAAGATTGGAAGAGG+TGG - chr4_1:85426714-85426733 Msa0580380:CDS 35.0%
TAATGCTGCGTATAAGAAGA+AGG - chr4_1:85426920-85426939 Msa0580380:CDS 35.0%
TCTGCATTATTCGAAAGCTT+TGG - chr4_1:85426959-85426978 Msa0580380:intron 35.0%
TGTATACTTGGAAATGGGAA+AGG - chr4_1:85427025-85427044 Msa0580380:intron 35.0%
ACATGATAGCCTTCTCAATT+TGG + chr4_1:85427453-85427472 None:intergenic 35.0%
TTGAGAAGGCTATCATGTAT+TGG - chr4_1:85427455-85427474 Msa0580380:intron 35.0%
!! TTTGATTTGTTCCTGACACT+TGG - chr4_1:85427520-85427539 Msa0580380:CDS 35.0%
ATTCTTCAACATTTGGAGGA+CGG + chr4_1:85427774-85427793 None:intergenic 35.0%
!! AGTGAAGGCTTTGGATAAAA+GGG + chr4_1:85427918-85427937 None:intergenic 35.0%
!! TAGTGAAGGCTTTGGATAAA+AGG + chr4_1:85427919-85427938 None:intergenic 35.0%
TCCTAATTAAAGGGTAGTGA+AGG + chr4_1:85427933-85427952 None:intergenic 35.0%
AGGAGTTTATAGGAGAATGA+AGG - chr4_1:85427949-85427968 Msa0580380:CDS 35.0%
!!! GAATGAAGGAGAGTGTTTTT+TGG - chr4_1:85427963-85427982 Msa0580380:CDS 35.0%
GAAGAAAAATATGCCATGCA+AGG + chr4_1:85428046-85428065 None:intergenic 35.0%
ATAAACCAAAGTCAACCTTC+AGG + chr4_1:85428355-85428374 None:intergenic 35.0%
GTTAAAGGGTCATTTAACTC+CGG + chr4_1:85428429-85428448 None:intergenic 35.0%
TTTCAAGACTGCTGAGAATT+TGG - chr4_1:85428463-85428482 Msa0580380:intron 35.0%
TTCAAGACTGCTGAGAATTT+GGG - chr4_1:85428464-85428483 Msa0580380:intron 35.0%
!! TGATTTTCCAGCAGAGTATT+TGG - chr4_1:85428523-85428542 Msa0580380:intron 35.0%
! ACAAAACCGCTGTTATGTTT+TGG + chr4_1:85428627-85428646 None:intergenic 35.0%
! AAGCTTGTTTCAGTGTTTGA+TGG - chr4_1:85428652-85428671 Msa0580380:intron 35.0%
ATAGGATTAGGAAGATTTCC+TGG - chr4_1:85428716-85428735 Msa0580380:intron 35.0%
AGATTTCCTGGTGTTTGAAT+AGG - chr4_1:85428728-85428747 Msa0580380:intron 35.0%
TTGTATCCTATTCAAACACC+AGG + chr4_1:85428737-85428756 None:intergenic 35.0%
ATAGGATTAGGAAGATTTCC+TGG - chr4_1:85428716-85428735 Msa0580380:intron 35.0%
AGATTTCCTGGTGTTTGAAT+AGG - chr4_1:85428728-85428747 Msa0580380:intron 35.0%
CCTCATACTGAAAAGATTCA+AGG + chr4_1:85428878-85428897 None:intergenic 35.0%
! CCTTGAATCTTTTCAGTATG+AGG - chr4_1:85428875-85428894 Msa0580380:intron 35.0%
! TTTTGGTAAGTCTCAATGAC+AGG + chr4_1:85429035-85429054 None:intergenic 35.0%
AGCTTCATTGAGTTTCTTCA+GGG + chr4_1:85429087-85429106 None:intergenic 35.0%
TATGAAAACCTTGTCTTGCA+GGG - chr4_1:85429295-85429314 Msa0580380:intron 35.0%
GTGTAATGCTTAATAGCTTC+AGG + chr4_1:85429348-85429367 None:intergenic 35.0%
AAGAAACCCGAAAAATCCTA+AGG - chr4_1:85429380-85429399 Msa0580380:intron 35.0%
CTATCTGAATCCTAACAAGT+TGG - chr4_1:85429443-85429462 Msa0580380:intron 35.0%
! ATGGAGTATTCCAACTTGTT+AGG + chr4_1:85429456-85429475 None:intergenic 35.0%
TGGAATACTCCATTTCTTTC+AGG - chr4_1:85429463-85429482 Msa0580380:intron 35.0%
TTTGCTTCACACAACTGAAA+TGG + chr4_1:85429801-85429820 None:intergenic 35.0%
CAAATTAATAGAACCAGTCG+TGG - chr4_1:85429817-85429836 Msa0580380:intron 35.0%
AATTAATAGAACCAGTCGTG+GGG - chr4_1:85429819-85429838 Msa0580380:intron 35.0%
!!! GACAGGTTTGCTTTTTTTCT+TGG - chr4_1:85430016-85430035 Msa0580380:CDS 35.0%
TGATTTCCAGGAAAATCCAA+AGG - chr4_1:85430116-85430135 Msa0580380:CDS 35.0%
TTACTTCATCTGGACAATTC+CGG + chr4_1:85430202-85430221 None:intergenic 35.0%
! GGTATTGGAATAGATTGGAT+TGG - chr4_1:85430289-85430308 Msa0580380:CDS 35.0%
! TGGATTGGAAGTACAATAGT+TGG - chr4_1:85430304-85430323 Msa0580380:CDS 35.0%
! GGATTGGAAGTACAATAGTT+GGG - chr4_1:85430305-85430324 Msa0580380:CDS 35.0%
!! GTATGTCTTGTGTTTGTTGT+AGG - chr4_1:85430779-85430798 Msa0580380:five_prime_UTR 35.0%
!!! GTTTGTTGTAGGCAGTATTT+TGG - chr4_1:85430790-85430809 Msa0580380:five_prime_UTR 35.0%
TCCTCATTGAACAATTGAGT+CGG - chr4_1:85430824-85430843 Msa0580380:five_prime_UTR 35.0%
!!! AAAAGGAGTTTTGCTGATTC+TGG - chr4_1:85430891-85430910 Msa0580380:five_prime_UTR 35.0%
GATCGGAGTTGAAATCGAAA+GGG + chr4_1:85426113-85426132 None:intergenic 40.0%
AGATCGGAGTTGAAATCGAA+AGG + chr4_1:85426114-85426133 None:intergenic 40.0%
TTTCAACTCCGATCTATCCA+TGG - chr4_1:85426119-85426138 Msa0580380:three_prime_UTR 40.0%
! TTCGACGGTTTTCTTTGCAT+CGG + chr4_1:85426310-85426329 None:intergenic 40.0%
! ACTCAAACCTGATTGGTCAA+AGG - chr4_1:85426329-85426348 Msa0580380:three_prime_UTR 40.0%
! CTCAAACCTGATTGGTCAAA+GGG - chr4_1:85426330-85426349 Msa0580380:three_prime_UTR 40.0%
TTGAGAAAGACCAAGATGAG+CGG + chr4_1:85426373-85426392 None:intergenic 40.0%
! GCTGTTTCAGCTTACAAGAA+AGG - chr4_1:85426402-85426421 Msa0580380:three_prime_UTR 40.0%
TCGGCTAAACCTGATTTCAA+GGG + chr4_1:85426453-85426472 None:intergenic 40.0%
ATCGGCTAAACCTGATTTCA+AGG + chr4_1:85426454-85426473 None:intergenic 40.0%
!! AAAAGCATCACCAAACGGAT+TGG + chr4_1:85426529-85426548 None:intergenic 40.0%
!! CCAGAAAAAGCATCACCAAA+CGG + chr4_1:85426534-85426553 None:intergenic 40.0%
TTACTGCTGATCCTACAACT+AGG - chr4_1:85426574-85426593 Msa0580380:three_prime_UTR 40.0%
TACTGCTGATCCTACAACTA+GGG - chr4_1:85426575-85426594 Msa0580380:three_prime_UTR 40.0%
! CAGAGAGTTATGCAAGCTTT+TGG - chr4_1:85426681-85426700 Msa0580380:exon 40.0%
! GAGAGTTATGCAAGCTTTTG+GGG - chr4_1:85426683-85426702 Msa0580380:exon 40.0%
!! AGCTTTGGAATTGGATGATG+AGG - chr4_1:85426974-85426993 Msa0580380:intron 40.0%
TTTCCAAGTATACAGCAGCA+CGG + chr4_1:85427019-85427038 None:intergenic 40.0%
TGCTGCTGTATACTTGGAAA+TGG - chr4_1:85427019-85427038 Msa0580380:intron 40.0%
GCTGCTGTATACTTGGAAAT+GGG - chr4_1:85427020-85427039 Msa0580380:intron 40.0%
ACTGTGCTATCTCTATGCAA+AGG - chr4_1:85427238-85427257 Msa0580380:CDS 40.0%
CTGTGCTATCTCTATGCAAA+GGG - chr4_1:85427239-85427258 Msa0580380:CDS 40.0%
ACCTAGGGAAAAAGTTGAAC+AGG + chr4_1:85427312-85427331 None:intergenic 40.0%
ATGAGAGAACTCGGACAATT+TGG + chr4_1:85427812-85427831 None:intergenic 40.0%
! TTGTCCGAGTTCTCTCATTT+TGG - chr4_1:85427814-85427833 Msa0580380:CDS 40.0%
!! TCTCTCATTTTGGAGGGATT+TGG - chr4_1:85427824-85427843 Msa0580380:CDS 40.0%
! ATTAACTGCCCATTCGAGTT+AGG - chr4_1:85427861-85427880 Msa0580380:CDS 40.0%
! TTAACTGCCCATTCGAGTTA+GGG - chr4_1:85427862-85427881 Msa0580380:CDS 40.0%
TTAAAGGGTAGTGAAGGCTT+TGG + chr4_1:85427927-85427946 None:intergenic 40.0%
GCCTTCACTACCCTTTAATT+AGG - chr4_1:85427929-85427948 Msa0580380:CDS 40.0%
AAAATATGCCATGCAAGGTG+AGG + chr4_1:85428041-85428060 None:intergenic 40.0%
CGGGAACTTAAAAATGCACT+GGG - chr4_1:85428090-85428109 Msa0580380:intron 40.0%
!!! GACTTTGAAGGGTGTTTTAG+AGG - chr4_1:85428117-85428136 Msa0580380:intron 40.0%
!!! GGAGCATCTTCACTTTTTCT+GGG + chr4_1:85428242-85428261 None:intergenic 40.0%
!!! AGGAGCATCTTCACTTTTTC+TGG + chr4_1:85428243-85428262 None:intergenic 40.0%
!! GTAGCCTTAAGGCTTTGAAT+GGG + chr4_1:85428326-85428345 None:intergenic 40.0%
ATCGTGGAATCTAATCACAC+CGG - chr4_1:85428407-85428426 Msa0580380:intron 40.0%
GGATACTAAGTGCAATAAGC+AGG + chr4_1:85428606-85428625 None:intergenic 40.0%
TCCTGGTGTTTGAATAGGAT+AGG - chr4_1:85428733-85428752 Msa0580380:intron 40.0%
TCCTATCCTATTCAAACACC+AGG + chr4_1:85428803-85428822 None:intergenic 40.0%
TGTGATAAGGCTGTTGAAAG+AGG - chr4_1:85428912-85428931 Msa0580380:intron 40.0%
! TGATAGCAAGAGCTTTGACA+AGG - chr4_1:85428961-85428980 Msa0580380:intron 40.0%
CAGCTTCATTGAGTTTCTTC+AGG + chr4_1:85429088-85429107 None:intergenic 40.0%
GAAACTCAATGAAGCTGAGA+AGG - chr4_1:85429091-85429110 Msa0580380:intron 40.0%
ATCTCTTAGTCTGATCTTCC+AGG - chr4_1:85429185-85429204 Msa0580380:intron 40.0%
ATAATGTGGAAATAGAGGCC+AGG + chr4_1:85429238-85429257 None:intergenic 40.0%
GTATGAAAACCTTGTCTTGC+AGG - chr4_1:85429294-85429313 Msa0580380:intron 40.0%
TATTCATTCCCTGCAAGACA+AGG + chr4_1:85429306-85429325 None:intergenic 40.0%
TTGAATTCAGGTGGTCCTTA+TGG - chr4_1:85429415-85429434 Msa0580380:intron 40.0%
AGCTGCATGTTACACAAAAC+TGG - chr4_1:85429499-85429518 Msa0580380:intron 40.0%
GCTGCATGTTACACAAAACT+GGG - chr4_1:85429500-85429519 Msa0580380:intron 40.0%
CTGCATGTTACACAAAACTG+GGG - chr4_1:85429501-85429520 Msa0580380:intron 40.0%
TGCATGTTACACAAAACTGG+GGG - chr4_1:85429502-85429521 Msa0580380:intron 40.0%
TCTGCATCCTTTAAACCTTC+AGG + chr4_1:85429533-85429552 None:intergenic 40.0%
!! AAAGGCTTTGGAAACATACC+AGG - chr4_1:85429634-85429653 Msa0580380:intron 40.0%
! CTTTGGAAACATACCAGGAA+GGG - chr4_1:85429639-85429658 Msa0580380:intron 40.0%
GAAACATGATGCAAACAACC+AGG - chr4_1:85429664-85429683 Msa0580380:intron 40.0%
AACAACCAGGAATTGCTTGA+AGG - chr4_1:85429677-85429696 Msa0580380:intron 40.0%
ACAACCAGGAATTGCTTGAA+GGG - chr4_1:85429678-85429697 Msa0580380:intron 40.0%
TTGCAGCCAAAAAAGGAAAC+TGG + chr4_1:85429757-85429776 None:intergenic 40.0%
! ACATGACTTGCAGCCAAAAA+AGG + chr4_1:85429764-85429783 None:intergenic 40.0%
TGTAACTCCTGAAGAGTTGA+AGG - chr4_1:85429843-85429862 Msa0580380:intron 40.0%
! TGAAGGATGTTCTGAATCTC+TGG + chr4_1:85429982-85430001 None:intergenic 40.0%
AGCAAACCTGTCTCATAACA+GGG + chr4_1:85430008-85430027 None:intergenic 40.0%
AAGCAAACCTGTCTCATAAC+AGG + chr4_1:85430009-85430028 None:intergenic 40.0%
!! TAATGGTTGGCTTTGTATGC+AGG - chr4_1:85430086-85430105 Msa0580380:CDS 40.0%
!! TTGGCTTTGTATGCAGGTAT+TGG - chr4_1:85430092-85430111 Msa0580380:CDS 40.0%
AGCTCTTGCGAAAAAGCAAT+TGG - chr4_1:85430239-85430258 Msa0580380:CDS 40.0%
TGCGTTTACAATGCAGTAAC+AGG - chr4_1:85430486-85430505 Msa0580380:CDS 40.0%
! GAACCTTTTCTTGCAAAGAG+AGG + chr4_1:85430542-85430561 None:intergenic 40.0%
TAGGTGCAAGTGTAATGTTG+TGG - chr4_1:85430575-85430594 Msa0580380:CDS 40.0%
ATAAACGAAAACGGGGAAAG+TGG - chr4_1:85430609-85430628 Msa0580380:CDS 40.0%
! TTTAGAGCAACGACCTTGAT+GGG + chr4_1:85430719-85430738 None:intergenic 40.0%
! ATTTAGAGCAACGACCTTGA+TGG + chr4_1:85430720-85430739 None:intergenic 40.0%
! ACCGACTCAATTGTTCAATG+AGG + chr4_1:85430828-85430847 None:intergenic 40.0%
AGAGAGTTCTACTAGGGTCT+GGG + chr4_1:85425956-85425975 None:intergenic 45.0%
TAGAGAGTTCTACTAGGGTC+TGG + chr4_1:85425957-85425976 None:intergenic 45.0%
!! GAGAGAGTGGGTTAGGTTAT+AGG + chr4_1:85425997-85426016 None:intergenic 45.0%
AGAGAGGATAGAGAGAGAGT+GGG + chr4_1:85426009-85426028 None:intergenic 45.0%
AAGAGAGGATAGAGAGAGAG+TGG + chr4_1:85426010-85426029 None:intergenic 45.0%
GAGAGTGAGGAATTGAAGAG+AGG + chr4_1:85426025-85426044 None:intergenic 45.0%
!!! GGTTTTGGGGATTTTGCGAT+AGG + chr4_1:85426092-85426111 None:intergenic 45.0%
TGATGGCATCTGAGAAGTGA+CGG + chr4_1:85426206-85426225 None:intergenic 45.0%
! CCAATCAGGTTTGAGTTCGA+CGG + chr4_1:85426325-85426344 None:intergenic 45.0%
CTGTAACCCTTTGACCAATC+AGG + chr4_1:85426339-85426358 None:intergenic 45.0%
!!! CCGTTTGGTGATGCTTTTTC+TGG - chr4_1:85426531-85426550 Msa0580380:three_prime_UTR 45.0%
!!! TGGTGATGCTTTTTCTGGAC+CGG - chr4_1:85426536-85426555 Msa0580380:three_prime_UTR 45.0%
! TTTTTCTGGACCGGAGATGT+GGG - chr4_1:85426545-85426564 Msa0580380:three_prime_UTR 45.0%
! TAACCGTGCTGCTGTATACT+TGG - chr4_1:85427013-85427032 Msa0580380:intron 45.0%
!! GCCTGTTCAACTTTTTCCCT+AGG - chr4_1:85427308-85427327 Msa0580380:CDS 45.0%
TTGTTCCTGACACTTGGAAG+TGG - chr4_1:85427526-85427545 Msa0580380:CDS 45.0%
TATCACCACTTCCAAGTGTC+AGG + chr4_1:85427534-85427553 None:intergenic 45.0%
AACTCGGACAATTTGGAGGA+GGG + chr4_1:85427805-85427824 None:intergenic 45.0%
AGAGAACTCGGACAATTTGG+AGG + chr4_1:85427809-85427828 None:intergenic 45.0%
! TCCGAGTTCTCTCATTTTGG+AGG - chr4_1:85427817-85427836 Msa0580380:CDS 45.0%
CCCTCCAAAATGAGAGAACT+CGG + chr4_1:85427821-85427840 None:intergenic 45.0%
! CCGAGTTCTCTCATTTTGGA+GGG - chr4_1:85427818-85427837 Msa0580380:CDS 45.0%
! TAACTGCCCATTCGAGTTAG+GGG - chr4_1:85427863-85427882 Msa0580380:CDS 45.0%
ATAGTCCCCCTAACTCGAAT+GGG + chr4_1:85427872-85427891 None:intergenic 45.0%
!! GAAGGCTTTGGATAAAAGGG+AGG + chr4_1:85427915-85427934 None:intergenic 45.0%
GCGGGAACTTAAAAATGCAC+TGG - chr4_1:85428089-85428108 Msa0580380:intron 45.0%
CACTGGGAGAAGACTTTGAA+GGG - chr4_1:85428106-85428125 Msa0580380:intron 45.0%
GTCTCCCATTCAAAGCCTTA+AGG - chr4_1:85428319-85428338 Msa0580380:intron 45.0%
!! GGTAGCCTTAAGGCTTTGAA+TGG + chr4_1:85428327-85428346 None:intergenic 45.0%
TCAAAGCCTTAAGGCTACCT+TGG - chr4_1:85428328-85428347 Msa0580380:intron 45.0%
AAAGTCAACCTTCAGGACCA+AGG + chr4_1:85428348-85428367 None:intergenic 45.0%
! TTGGTCCTGAAGGTTGACTT+TGG - chr4_1:85428347-85428366 Msa0580380:intron 45.0%
! GCAAGAGCTTTGACAAGGAA+AGG - chr4_1:85428966-85428985 Msa0580380:intron 45.0%
ACAAGGAAAGGAACTGCCAT+GGG - chr4_1:85428978-85428997 Msa0580380:intron 45.0%
AGGAACTGCCATGGGTAAAA+CGG - chr4_1:85428986-85429005 Msa0580380:intron 45.0%
!!! GCATTTTGCCGTTTTACCCA+TGG + chr4_1:85428997-85429016 None:intergenic 45.0%
! TGAGTTTCTTCAGGGTGTCT+GGG + chr4_1:85429079-85429098 None:intergenic 45.0%
! TTGAGTTTCTTCAGGGTGTC+TGG + chr4_1:85429080-85429099 None:intergenic 45.0%
CGATCCAAATTTGGCTGATG+AGG - chr4_1:85429145-85429164 Msa0580380:intron 45.0%
CTCTCCTCATCAGCCAAATT+TGG + chr4_1:85429152-85429171 None:intergenic 45.0%
GCTGATGAGGAGAGAGAAAA+AGG - chr4_1:85429158-85429177 Msa0580380:intron 45.0%
GGCAATGCCTGAAGGTTTAA+AGG - chr4_1:85429523-85429542 Msa0580380:intron 45.0%
TATAACCCTTGGTGAAGGTC+GGG + chr4_1:85429574-85429593 None:intergenic 45.0%
GTATAACCCTTGGTGAAGGT+CGG + chr4_1:85429575-85429594 None:intergenic 45.0%
!! GCTTTGGAAACATACCAGGA+AGG - chr4_1:85429638-85429657 Msa0580380:intron 45.0%
CATCATGTTTCAACCCTTCC+TGG + chr4_1:85429655-85429674 None:intergenic 45.0%
CAACCAGGAATTGCTTGAAG+GGG - chr4_1:85429679-85429698 Msa0580380:intron 45.0%
AATTGCTTGAAGGGGTTCGA+AGG - chr4_1:85429687-85429706 Msa0580380:intron 45.0%
TGTCTCTCCTTCAACTCTTC+AGG + chr4_1:85429853-85429872 None:intergenic 45.0%
TGAAGAGTTGAAGGAGAGAC+AGG - chr4_1:85429852-85429871 Msa0580380:intron 45.0%
GTCTCATAACAGGGTCTTGA+AGG + chr4_1:85429999-85430018 None:intergenic 45.0%
TCAAGACCCTGTTATGAGAC+AGG - chr4_1:85429999-85430018 Msa0580380:CDS 45.0%
!! GCAGGTATTGGTTGATTTCC+AGG - chr4_1:85430104-85430123 Msa0580380:CDS 45.0%
ACAGGAACATACCAAGAACC+CGG - chr4_1:85430143-85430162 Msa0580380:CDS 45.0%
ATCCAAAAGCTGATCAGTGC+CGG - chr4_1:85430180-85430199 Msa0580380:CDS 45.0%
GTCGTGTGCATGCTTTCAAT+TGG - chr4_1:85430412-85430431 Msa0580380:CDS 45.0%
GCACCTCTCTTTGCAAGAAA+AGG - chr4_1:85430536-85430555 Msa0580380:CDS 45.0%
! TTCTACTAGGGTCTGGGGTT+GGG + chr4_1:85425950-85425969 None:intergenic 50.0%
GAGAGTTCTACTAGGGTCTG+GGG + chr4_1:85425955-85425974 None:intergenic 50.0%
! GGATAGAGAGAGAGTGGGTT+AGG + chr4_1:85426004-85426023 None:intergenic 50.0%
! ATGTTGATTGGGGGAGAGTG+AGG + chr4_1:85426038-85426057 None:intergenic 50.0%
TTCGTCGGCCATGGATAGAT+CGG + chr4_1:85426130-85426149 None:intergenic 50.0%
!! GCCTTTGGCTTTAGCTTCGT+CGG + chr4_1:85426145-85426164 None:intergenic 50.0%
!! ATCTGAGAAGTGACGGATGG+CGG + chr4_1:85426199-85426218 None:intergenic 50.0%
! GTTGGTGGGGGAAAGATTGA+TGG + chr4_1:85426223-85426242 None:intergenic 50.0%
! AATACAGGACGTGGTTGGTG+GGG + chr4_1:85426236-85426255 None:intergenic 50.0%
GAATACAGGACGTGGTTGGT+GGG + chr4_1:85426237-85426256 None:intergenic 50.0%
GTTGGAATACAGGACGTGGT+TGG + chr4_1:85426241-85426260 None:intergenic 50.0%
ATCGGTTGGAATACAGGACG+TGG + chr4_1:85426245-85426264 None:intergenic 50.0%
CCGTCGAACTCAAACCTGAT+TGG - chr4_1:85426322-85426341 Msa0580380:three_prime_UTR 50.0%
TCAAAGGGTTACAGCCGTCT+CGG - chr4_1:85426345-85426364 Msa0580380:three_prime_UTR 50.0%
! CTTTTTCTGGACCGGAGATG+TGG - chr4_1:85426544-85426563 Msa0580380:three_prime_UTR 50.0%
GTAAGTTTCGCCCACATCTC+CGG + chr4_1:85426558-85426577 None:intergenic 50.0%
! TGGAAGAGGTGGTGATGATG+TGG - chr4_1:85426725-85426744 Msa0580380:CDS 50.0%
AGGAGAAGGAAGTGAAGCAG+AGG - chr4_1:85426865-85426884 Msa0580380:intron 50.0%
GAAGGAAGTGAAGCAGAGGA+AGG - chr4_1:85426869-85426888 Msa0580380:intron 50.0%
ATACAGCAGCACGGTTAGTG+AGG + chr4_1:85427010-85427029 None:intergenic 50.0%
GAACTCGGACAATTTGGAGG+AGG + chr4_1:85427806-85427825 None:intergenic 50.0%
! AACTGCCCATTCGAGTTAGG+GGG - chr4_1:85427864-85427883 Msa0580380:CDS 50.0%
GATAGTCCCCCTAACTCGAA+TGG + chr4_1:85427873-85427892 None:intergenic 50.0%
! ACTAGTCTCCTCACCTTGCA+TGG - chr4_1:85428030-85428049 Msa0580380:intron 50.0%
GCACTGGGAGAAGACTTTGA+AGG - chr4_1:85428105-85428124 Msa0580380:intron 50.0%
AGACTAGAGAGAGAGAGGGA+GGG + chr4_1:85428303-85428322 None:intergenic 50.0%
TGGGAGACTAGAGAGAGAGA+GGG + chr4_1:85428307-85428326 None:intergenic 50.0%
ATGGGAGACTAGAGAGAGAG+AGG + chr4_1:85428308-85428327 None:intergenic 50.0%
! TCAGGACCAAGGTAGCCTTA+AGG + chr4_1:85428337-85428356 None:intergenic 50.0%
TAAGGCTACCTTGGTCCTGA+AGG - chr4_1:85428337-85428356 Msa0580380:intron 50.0%
GAGGATGCCAAATACTCTGC+TGG + chr4_1:85428533-85428552 None:intergenic 50.0%
GACAAGGAAAGGAACTGCCA+TGG - chr4_1:85428977-85428996 Msa0580380:intron 50.0%
! GGTGCTCTGTAAGCGCTTTT+TGG + chr4_1:85429052-85429071 None:intergenic 50.0%
! TCTTCAGGGTGTCTGGGTTA+CGG + chr4_1:85429073-85429092 None:intergenic 50.0%
CTTGCAGGAAATGAAGAGCC+TGG + chr4_1:85429206-85429225 None:intergenic 50.0%
TGGAAATAGAGGCCAGGAGA+AGG + chr4_1:85429232-85429251 None:intergenic 50.0%
CCTTCACCAAGGGTTATACC+CGG - chr4_1:85429576-85429595 Msa0580380:intron 50.0%
ACCAAGGGTTATACCCGGAA+GGG - chr4_1:85429581-85429600 Msa0580380:intron 50.0%
AAAACTGAACCGCACCCTTC+CGG + chr4_1:85429598-85429617 None:intergenic 50.0%
GAACCCCTTCAAGCAATTCC+TGG + chr4_1:85429685-85429704 None:intergenic 50.0%
! GTGCAGCCTTTGGATTTTCC+TGG + chr4_1:85430125-85430144 None:intergenic 50.0%
GGAAAATCCAAAGGCTGCAC+AGG - chr4_1:85430125-85430144 Msa0580380:CDS 50.0%
GTATGTTCCTGTGCAGCCTT+TGG + chr4_1:85430135-85430154 None:intergenic 50.0%
CAGGAACATACCAAGAACCC+GGG - chr4_1:85430144-85430163 Msa0580380:CDS 50.0%
TGGATCTTGTCCATCACACC+CGG + chr4_1:85430165-85430184 None:intergenic 50.0%
!!! TTCCGGCACTGATCAGCTTT+TGG + chr4_1:85430185-85430204 None:intergenic 50.0%
CAGGCAATACGAGTCTCTGT+AGG - chr4_1:85430505-85430524 Msa0580380:CDS 50.0%
!! ATGTCGAGCTGCTTGCTATG+AGG - chr4_1:85430641-85430660 Msa0580380:CDS 50.0%
! TCTACTAGGGTCTGGGGTTG+GGG + chr4_1:85425949-85425968 None:intergenic 55.0%
! GTTCTACTAGGGTCTGGGGT+TGG + chr4_1:85425951-85425970 None:intergenic 55.0%
GCCGACGAAGCTAAAGCCAA+AGG - chr4_1:85426141-85426160 Msa0580380:three_prime_UTR 55.0%
GGAGAATGCAGCGTTGCCTT+TGG + chr4_1:85426160-85426179 None:intergenic 55.0%
! GGCATCTGAGAAGTGACGGA+TGG + chr4_1:85426202-85426221 None:intergenic 55.0%
!! ATACAGGACGTGGTTGGTGG+GGG + chr4_1:85426235-85426254 None:intergenic 55.0%
GGAATACAGGACGTGGTTGG+TGG + chr4_1:85426238-85426257 None:intergenic 55.0%
CAGCGGATCGGTTGGAATAC+AGG + chr4_1:85426251-85426270 None:intergenic 55.0%
AGCCGATGCTCAAAAAGCCG+CGG - chr4_1:85426467-85426486 Msa0580380:three_prime_UTR 55.0%
!! TCACCAAACGGATTGGCACC+CGG + chr4_1:85426522-85426541 None:intergenic 55.0%
GCCTGATATGCCGTCCAGTT+CGG - chr4_1:85426752-85426771 Msa0580380:CDS 55.0%
TCCGAACTGGACGGCATATC+AGG + chr4_1:85426756-85426775 None:intergenic 55.0%
ATATGCCGTCCAGTTCGGAG+AGG - chr4_1:85426757-85426776 Msa0580380:CDS 55.0%
CTCTTCCTCTCCGAACTGGA+CGG + chr4_1:85426765-85426784 None:intergenic 55.0%
AGCTCTCTTCCTCTCCGAAC+TGG + chr4_1:85426769-85426788 None:intergenic 55.0%
GAAGAGAGCTGCTGAACCTG+AGG - chr4_1:85426779-85426798 Msa0580380:CDS 55.0%
TGAACCTGAGGTGGCAAAGC+AGG - chr4_1:85426791-85426810 Msa0580380:intron 55.0%
TCATCAGCCACCTCCTCCAT+TGG + chr4_1:85426846-85426865 None:intergenic 55.0%
AATGGAGGAGGTGGCTGATG+AGG - chr4_1:85426845-85426864 Msa0580380:intron 55.0%
AGTGAAGCAGAGGAAGGCTG+AGG - chr4_1:85426875-85426894 Msa0580380:intron 55.0%
AGCAGCACGGTTAGTGAGGA+AGG + chr4_1:85427006-85427025 None:intergenic 55.0%
GACTAGAGAGAGAGAGGGAG+GGG + chr4_1:85428302-85428321 None:intergenic 55.0%
GAGACTAGAGAGAGAGAGGG+AGG + chr4_1:85428304-85428323 None:intergenic 55.0%
TCCTGCAAGCATCCTTCTCC+TGG - chr4_1:85429217-85429236 Msa0580380:intron 55.0%
AAACTGGGGGCAATGCCTGA+AGG - chr4_1:85429515-85429534 Msa0580380:intron 55.0%
CTTGACCCGACCTTCACCAA+GGG - chr4_1:85429566-85429585 Msa0580380:intron 55.0%
CCGGGTATAACCCTTGGTGA+AGG + chr4_1:85429579-85429598 None:intergenic 55.0%
CACCAAGGGTTATACCCGGA+AGG - chr4_1:85429580-85429599 Msa0580380:intron 55.0%
ACCCTTCCGGGTATAACCCT+TGG + chr4_1:85429585-85429604 None:intergenic 55.0%
AAACTGAACCGCACCCTTCC+GGG + chr4_1:85429597-85429616 None:intergenic 55.0%
AGGAGTTACATCCCCACGAC+TGG + chr4_1:85429833-85429852 None:intergenic 55.0%
TACCAAGAACCCGGGTGTGA+TGG - chr4_1:85430152-85430171 Msa0580380:CDS 55.0%
GGATCTTGTCCATCACACCC+GGG + chr4_1:85430164-85430183 None:intergenic 55.0%
! GGCTTTAGCTTCGTCGGCCA+TGG + chr4_1:85426139-85426158 None:intergenic 60.0%
GGCAACGCTGCATTCTCCTC+CGG - chr4_1:85426162-85426181 Msa0580380:three_prime_UTR 60.0%
! GATGGCGGTTGCGAAATCGC+CGG + chr4_1:85426184-85426203 None:intergenic 60.0%
! GAGAAGCGTGAGCAGCGGAT+CGG + chr4_1:85426263-85426282 None:intergenic 60.0%
! CTGGAGAGAAGCGTGAGCAG+CGG + chr4_1:85426268-85426287 None:intergenic 60.0%
! CAAGATGAGCGGCACCGAGA+CGG + chr4_1:85426362-85426381 None:intergenic 60.0%
!! CGCCGCGGCTTTTTGAGCAT+CGG + chr4_1:85426472-85426491 None:intergenic 60.0%
CGATGCTCAAAAAGCCGCGG+CGG - chr4_1:85426470-85426489 Msa0580380:three_prime_UTR 60.0%
CCTAGAAAAACTCGCCGCCG+CGG + chr4_1:85426487-85426506 None:intergenic 60.0%
TTCTAGGCCACGTTCTGCGC+CGG - chr4_1:85426500-85426519 Msa0580380:three_prime_UTR 60.0%
GAGAGCTGCTGAACCTGAGG+TGG - chr4_1:85426782-85426801 Msa0580380:CDS 60.0%
ACCTGAGGTGGCAAAGCAGG+CGG - chr4_1:85426794-85426813 Msa0580380:intron 60.0%
!! TCCTCCATTGGCTCCGGTTC+CGG + chr4_1:85426834-85426853 None:intergenic 60.0%
GGAGGTGGCTGATGAGGAGA+AGG - chr4_1:85426851-85426870 Msa0580380:intron 60.0%
TGAGGCGCAGAAGGAGAAGG+AGG - chr4_1:85426893-85426912 Msa0580380:intron 60.0%
GGGCGAAGGGGGTAGAGAAT+AGG + chr4_1:85428263-85428282 None:intergenic 60.0%
AGAGAGAGAGAGGGAGGGGA+CGG + chr4_1:85428298-85428317 None:intergenic 60.0%
GCCAGGAGAAGGATGCTTGC+AGG + chr4_1:85429221-85429240 None:intergenic 60.0%
GCTTGACCCGACCTTCACCA+AGG - chr4_1:85429565-85429584 Msa0580380:intron 60.0%
GGGTTATACCCGGAAGGGTG+CGG - chr4_1:85429586-85429605 Msa0580380:intron 60.0%
GTCCATCACACCCGGGTTCT+TGG + chr4_1:85430157-85430176 None:intergenic 60.0%
AGCGTGAGCAGCGGATCGGT+TGG + chr4_1:85426259-85426278 None:intergenic 65.0%
!! CGTCTCGGTGCCGCTCATCT+TGG - chr4_1:85426360-85426379 Msa0580380:three_prime_UTR 65.0%
! CCGCGGCGGCGAGTTTTTCT+AGG - chr4_1:85426484-85426503 Msa0580380:three_prime_UTR 65.0%
TCTAGGCCACGTTCTGCGCC+GGG - chr4_1:85426501-85426520 Msa0580380:three_prime_UTR 65.0%
TCCGCCTGCTTTGCCACCTC+AGG + chr4_1:85426798-85426817 None:intergenic 65.0%
TGAGGTGGCAAAGCAGGCGG+AGG - chr4_1:85426797-85426816 Msa0580380:intron 65.0%
GGTTGAGCCTGAGCCGGAAC+CGG - chr4_1:85426818-85426837 Msa0580380:intron 65.0%
! ATTGGCTCCGGTTCCGGCTC+AGG + chr4_1:85426828-85426847 None:intergenic 65.0%
TGAGCCGGAACCGGAGCCAA+TGG - chr4_1:85426827-85426846 Msa0580380:intron 65.0%
GGAACCGGAGCCAATGGAGG+AGG - chr4_1:85426833-85426852 Msa0580380:intron 65.0%
ACCGGAGCCAATGGAGGAGG+TGG - chr4_1:85426836-85426855 Msa0580380:intron 65.0%
!! GCCACCTCCTCCATTGGCTC+CGG + chr4_1:85426840-85426859 None:intergenic 65.0%
GAGGAAGGCTGAGGCGCAGA+AGG - chr4_1:85426884-85426903 Msa0580380:intron 65.0%
GGCTGAGGCGCAGAAGGAGA+AGG - chr4_1:85426890-85426909 Msa0580380:intron 65.0%
GCGCAGAAGGAGAAGGAGGC+TGG - chr4_1:85426897-85426916 Msa0580380:CDS 65.0%
!! GAAGGGCTTTGGGGCGAAGG+GGG + chr4_1:85428274-85428293 None:intergenic 65.0%
!! CGAAGGGCTTTGGGGCGAAG+GGG + chr4_1:85428275-85428294 None:intergenic 65.0%
!! GCGAAGGGCTTTGGGGCGAA+GGG + chr4_1:85428276-85428295 None:intergenic 65.0%
AGGGGACGGCGAAGGGCTTT+GGG + chr4_1:85428284-85428303 None:intergenic 65.0%
GGCGGTTGCGAAATCGCCGG+AGG + chr4_1:85426181-85426200 None:intergenic 70.0%
TTGGCACCCGGCGCAGAACG+TGG + chr4_1:85426510-85426529 None:intergenic 70.0%
GCGCCGGGTGCCAATCCGTT+TGG - chr4_1:85426516-85426535 Msa0580380:three_prime_UTR 70.0%
GGCGGAGGTTGAGCCTGAGC+CGG - chr4_1:85426812-85426831 Msa0580380:intron 70.0%
GCCGGAACCGGAGCCAATGG+AGG - chr4_1:85426830-85426849 Msa0580380:intron 70.0%
!! GGCGAAGGGCTTTGGGGCGA+AGG + chr4_1:85428277-85428296 None:intergenic 70.0%
GGGGACGGCGAAGGGCTTTG+GGG + chr4_1:85428283-85428302 None:intergenic 70.0%
GAGGGGACGGCGAAGGGCTT+TGG + chr4_1:85428285-85428304 None:intergenic 70.0%
GAGAGGGAGGGGACGGCGAA+GGG + chr4_1:85428291-85428310 None:intergenic 70.0%
AGAGAGGGAGGGGACGGCGA+AGG + chr4_1:85428292-85428311 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 85425943 85430973 85425943 ID=Msa0580380;Name=Msa0580380
chr4_1 mRNA 85425943 85430973 85425943 ID=Msa0580380-mRNA-1;Parent=Msa0580380;Name=Msa0580380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=195|1|1|1|1|1|7|752|582
chr4_1 exon 85425943 85426808 85425943 ID=Msa0580380-mRNA-1:exon:31432;Parent=Msa0580380-mRNA-1
chr4_1 exon 85426896 85426955 85426896 ID=Msa0580380-mRNA-1:exon:31431;Parent=Msa0580380-mRNA-1
chr4_1 exon 85427043 85427109 85427043 ID=Msa0580380-mRNA-1:exon:31430;Parent=Msa0580380-mRNA-1
chr4_1 exon 85427208 85427431 85427208 ID=Msa0580380-mRNA-1:exon:31429;Parent=Msa0580380-mRNA-1
chr4_1 exon 85427515 85427600 85427515 ID=Msa0580380-mRNA-1:exon:31428;Parent=Msa0580380-mRNA-1
chr4_1 exon 85427737 85428025 85427737 ID=Msa0580380-mRNA-1:exon:31427;Parent=Msa0580380-mRNA-1
chr4_1 exon 85429870 85430973 85429870 ID=Msa0580380-mRNA-1:exon:31426;Parent=Msa0580380-mRNA-1
chr4_1 five_prime_UTR 85430779 85430973 85430779 ID=Msa0580380-mRNA-1:five_prime_utr;Parent=Msa0580380-mRNA-1
chr4_1 CDS 85429870 85430778 85429870 ID=Msa0580380-mRNA-1:cds;Parent=Msa0580380-mRNA-1
chr4_1 CDS 85427737 85428025 85427737 ID=Msa0580380-mRNA-1:cds;Parent=Msa0580380-mRNA-1
chr4_1 CDS 85427515 85427600 85427515 ID=Msa0580380-mRNA-1:cds;Parent=Msa0580380-mRNA-1
chr4_1 CDS 85427208 85427431 85427208 ID=Msa0580380-mRNA-1:cds;Parent=Msa0580380-mRNA-1
chr4_1 CDS 85427043 85427109 85427043 ID=Msa0580380-mRNA-1:cds;Parent=Msa0580380-mRNA-1
chr4_1 CDS 85426896 85426955 85426896 ID=Msa0580380-mRNA-1:cds;Parent=Msa0580380-mRNA-1
chr4_1 CDS 85426695 85426808 85426695 ID=Msa0580380-mRNA-1:cds;Parent=Msa0580380-mRNA-1
chr4_1 three_prime_UTR 85425943 85426694 85425943 ID=Msa0580380-mRNA-1:three_prime_utr;Parent=Msa0580380-mRNA-1
Gene Sequence

>Msa0580380

ATGGCCGACGAAGCTAAAGCCAAAGGCAACGCTGCATTCTCCTCCGGCGATTTCGCAACCGCCATCCGTCACTTCTCAGATGCCATCAATCTTTCCCCCACCAACCACGTCCTGTATTCCAACCGATCCGCTGCTCACGCTTCTCTCCAGAATTACACTGACGCTTTAACCGATGCAAAGAAAACCGTCGAACTCAAACCTGATTGGTCAAAGGGTTACAGCCGTCTCGGTGCCGCTCATCTTGGTCTTTCTCAATACGACGAAGCTGTTTCAGCTTACAAGAAAGGGTTAGAAATTGATCCTAATAATGAACCCTTGAAATCAGGTTTAGCCGATGCTCAAAAAGCCGCGGCGGCGAGTTTTTCTAGGCCACGTTCTGCGCCGGGTGCCAATCCGTTTGGTGATGCTTTTTCTGGACCGGAGATGTGGGCGAAACTTACTGCTGATCCTACAACTAGGGTTTATCTTCAACAGCCTGATTTTGTGAAGATGATGCAAGATATTCAAAAGGATCCCAATAATTTGAATTTGTATTTGAAGGATCAGAGAGTTATGCAAGCTTTTGGGGTTTTGCTTAATGTTAAGATTGGAAGAGGTGGTGATGATGTGGATATGCCTGATATGCCGTCCAGTTCGGAGAGGAAGAGAGCTGCTGAACCTGAGGTGGCAAAGCAGGCGGAGGTTGAGCCTGAGCCGGAACCGGAGCCAATGGAGGAGGTGGCTGATGAGGAGAAGGAAGTGAAGCAGAGGAAGGCTGAGGCGCAGAAGGAGAAGGAGGCTGGTAATGCTGCGTATAAGAAGAAGGATTTTGATACTGCGATTCTGCATTATTCGAAAGCTTTGGAATTGGATGATGAGGATGTTTCCTTCCTCACTAACCGTGCTGCTGTATACTTGGAAATGGGAAAGTATGAGGATTGCATAAAAGATTGTGATAAGGCTGTTGAAAGAGGACGAGAGCTAAGAGCAGACTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAACTGCCATGGGTAAAACGGCAAAATGCTCTAAAGATTATGAACCTGTCATTGAGACTTACCAAAAAGCGCTTACAGAGCACCGTAACCCAGACACCCTGAAGAAACTCAATGAAGCTGAGAAGGCCAAGAAAGAACTAGAACAACAAGAATACTTCGATCCAAATTTGGCTGATGAGGAGAGAGAAAAAGGGAATGAATACTTTAAGCAGCAGAAGTATCCTGAAGCTATTAAGCATTACACAGAGTCTATAAAAAGAAACCCGAAAAATCCTAAGGCTTATAGTAACAGAGCTGCATGTTACACAAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGTATTGAGCTTGACCCGACCTTCACCAAGGGTTATACCCGGAAGGGTGCGGTTCAGTTTTTCATGAAAGAATATGAAAAGGCTTTGGAAACATACCAGGAAGGGTTGAAACATGATGCAAACAACCAGGAATTGCTTGAAGGGGTTCGAAGTTGTGTGAAGCAAATTAATAGAACCAGTCGTGGGGATGTAACTCCTGAAGAGTTGAAGGAGAGACAGGCTAAGGCAATGCAAGATCCAGAGATTCAGAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCAAAGGCTGCACAGGAACATACCAAGAACCCGGGTGTGATGGACAAGATCCAAAAGCTGATCAGTGCCGGAATTGTCCAGATGAAGTAA
Protein sequence

>Msa0580380

MADEAKAKGNAAFSSGDFATAIRHFSDAINLSPTNHVLYSNRSAAHASLQNYTDALTDAKKTVELKPDWSKGYSRLGAAHLGLSQYDEAVSAYKKGLEIDPNNEPLKSGLADAQKAAAASFSRPRSAPGANPFGDAFSGPEMWAKLTADPTTRVYLQQPDFVKMMQDIQKDPNNLNLYLKDQRVMQAFGVLLNVKIGRGGDDVDMPDMPSSSERKRAAEPEVAKQAEVEPEPEPEPMEEVADEEKEVKQRKAEAQKEKEAGNAAYKKKDFDTAILHYSKALELDDEDVSFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRADYKMIARALTRKGTAMGKTAKCSKDYEPVIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPNLADEEREKGNEYFKQQKYPEAIKHYTESIKRNPKNPKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQFFMKEYEKALETYQEGLKHDANNQELLEGVRSCVKQINRTSRGDVTPEELKERQAKAMQDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPGVMDKIQKLISAGIVQMK*