AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0761830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0761830 MtrunA17_Chr5g0412151 98.263 518 5 2 1 515 1 517 0.0 1054
Msa0761830 MtrunA17_Chr2g0328971 52.289 415 135 12 11 417 4 363 3.08e-127 381
Msa0761830 MtrunA17_Chr4g0072291 77.523 218 45 2 214 427 148 365 1.29e-120 363
Msa0761830 MtrunA17_Chr7g0249621 62.752 298 77 6 199 462 222 519 3.64e-119 365
Msa0761830 MtrunA17_Chr4g0032631 51.319 417 138 12 10 417 2 362 6.81e-118 358
Msa0761830 MtrunA17_Chr1g0152161 49.873 395 140 10 83 424 126 515 6.91e-113 348
Msa0761830 MtrunA17_Chr8g0343851 52.408 353 125 6 86 407 91 431 1.01e-111 343
Msa0761830 MtrunA17_Chr3g0135161 77.436 195 43 1 216 409 301 495 1.25e-107 335
Msa0761830 MtrunA17_Chr4g0054351 66.667 246 66 4 216 457 301 534 2.34e-105 329
Msa0761830 MtrunA17_Chr5g0400871 67.391 230 68 3 221 443 245 474 1.72e-103 320
Msa0761830 MtrunA17_Chr8g0367311 63.922 255 66 5 262 514 22 252 1.33e-99 300
Msa0761830 MtrunA17_Chr4g0073521 70.482 166 49 0 224 389 46 211 1.29e-81 258
Msa0761830 MtrunA17_Chr8g0355191 68.675 166 52 0 224 389 54 219 1.23e-77 249
Msa0761830 MtrunA17_Chr7g0216601 65.680 169 55 1 224 389 64 232 1.51e-74 241
Msa0761830 MtrunA17_Chr6g0452911 63.743 171 52 1 229 389 65 235 6.80e-73 236
Msa0761830 MtrunA17_Chr8g0355181 67.470 166 54 0 224 389 55 220 1.47e-71 233
Msa0761830 MtrunA17_Chr4g0002011 68.639 169 50 1 224 389 35 203 2.71e-71 230
Msa0761830 MtrunA17_Chr8g0362541 62.222 180 54 1 224 389 68 247 7.38e-66 219
Msa0761830 MtrunA17_Chr2g0305821 65.254 118 41 0 220 337 42 159 6.22e-44 152
Msa0761830 MtrunA17_Chr7g0257361 52.273 176 73 3 177 349 12 179 2.68e-43 159
Msa0761830 MtrunA17_Chr7g0263581 48.438 192 89 4 201 392 114 295 4.27e-40 151
Msa0761830 MtrunA17_Chr4g0053181 52.096 167 66 4 229 392 177 332 4.97e-40 152
Msa0761830 MtrunA17_Chr5g0401891 51.176 170 75 3 229 398 153 314 1.52e-39 150
Msa0761830 MtrunA17_Chr4g0030191 43.304 224 113 5 189 412 96 305 5.90e-39 147
Msa0761830 MtrunA17_Chr2g0325911 43.455 191 84 5 202 392 109 275 1.71e-30 123
Msa0761830 MtrunA17_Chr8g0367321 54.902 102 37 3 164 263 99 193 5.31e-24 99.8
Msa0761830 MtrunA17_Chr2g0305831 71.186 59 17 0 331 389 1 59 3.58e-23 97.4
Msa0761830 MtrunA17_Chr3g0126151 47.368 95 49 1 273 367 47 140 1.47e-21 90.9
Msa0761830 MtrunA17_Chr1g0170761 39.837 123 60 4 225 344 134 245 5.53e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0761830 AT5G10510.6 53.213 607 152 23 12 515 7 584 2.59e-161 471
Msa0761830 AT5G10510.4 53.213 607 152 23 12 515 7 584 2.59e-161 471
Msa0761830 AT5G10510.3 51.356 627 153 23 12 515 7 604 7.59e-157 460
Msa0761830 AT5G65510.2 53.578 545 159 17 12 515 7 498 3.97e-155 452
Msa0761830 AT5G65510.1 53.578 545 159 17 12 515 7 498 3.97e-155 452
Msa0761830 AT5G10510.2 56.705 522 128 17 73 515 41 543 9.58e-155 452
Msa0761830 AT5G10510.1 52.605 595 156 22 18 515 4 569 3.28e-154 452
Msa0761830 AT5G10510.7 56.381 525 128 18 73 515 41 546 1.74e-152 447
Msa0761830 AT5G10510.5 56.381 525 128 18 73 515 41 546 1.74e-152 447
Msa0761830 AT5G65510.4 57.940 466 116 14 86 515 19 440 4.90e-150 437
Msa0761830 AT1G51190.1 52.370 422 147 14 11 417 4 386 2.22e-124 375
Msa0761830 AT3G20840.1 50.835 419 157 10 11 421 4 381 4.03e-122 370
Msa0761830 AT5G57390.2 63.929 280 80 6 206 477 63 329 1.40e-118 356
Msa0761830 AT5G57390.1 63.929 280 80 6 206 477 181 447 2.88e-117 357
Msa0761830 AT5G17430.2 67.829 258 77 3 201 454 123 378 5.30e-117 355
Msa0761830 AT5G17430.1 67.829 258 77 3 201 454 185 440 2.00e-116 355
Msa0761830 AT5G65510.3 59.677 310 74 7 83 359 16 307 2.38e-109 328
Msa0761830 AT5G65510.3 35.644 101 50 2 300 392 153 246 2.28e-11 65.5
Msa0761830 AT1G72570.1 64.831 236 71 2 169 401 173 399 3.74e-105 321
Msa0761830 AT4G37750.1 67.257 226 71 1 185 407 240 465 1.26e-103 322
Msa0761830 AT3G54320.3 65.556 180 59 1 224 400 61 240 2.60e-70 231
Msa0761830 AT3G54320.1 65.556 180 59 1 224 400 61 240 3.80e-70 231
Msa0761830 AT1G79700.2 68.047 169 51 1 224 389 48 216 7.50e-62 205
Msa0761830 AT1G16060.1 61.497 187 69 1 206 389 36 222 1.66e-60 203
Msa0761830 AT1G79700.1 63.905 169 48 2 224 389 48 206 6.31e-54 184
Msa0761830 AT3G54320.4 66.187 139 47 0 262 400 36 174 1.06e-51 180
Msa0761830 AT3G54320.5 66.187 139 47 0 262 400 36 174 1.06e-51 180
Msa0761830 AT1G79700.3 68.750 128 40 0 262 389 13 140 6.17e-43 153
Msa0761830 AT1G79700.4 68.750 128 40 0 262 389 7 134 7.48e-43 152
Msa0761830 AT2G41710.1 50.270 185 63 5 215 379 57 232 4.99e-42 155
Msa0761830 AT4G36920.1 46.377 207 103 3 192 398 95 293 6.23e-42 155
Msa0761830 AT4G36920.2 46.377 207 103 3 192 398 95 293 6.23e-42 155
Msa0761830 AT2G41710.4 50.270 185 63 5 215 379 57 232 1.09e-41 155
Msa0761830 AT1G16060.3 66.406 128 43 0 262 389 25 152 3.25e-40 147
Msa0761830 AT2G41710.2 48.947 190 63 6 215 379 57 237 1.14e-39 149
Msa0761830 AT5G67180.2 49.112 169 78 3 229 397 97 257 7.92e-39 144
Msa0761830 AT5G67180.3 49.112 169 78 3 229 397 97 257 1.28e-38 142
Msa0761830 AT5G67180.1 49.419 172 73 4 229 397 97 257 3.97e-38 143
Msa0761830 AT2G28550.3 50.000 164 74 3 229 392 154 309 7.93e-38 145
Msa0761830 AT2G41710.3 42.273 220 63 6 215 379 57 267 2.81e-35 137
Msa0761830 AT3G54320.2 65.657 99 34 0 302 400 1 99 5.58e-31 122
Msa0761830 AT1G16060.2 71.591 88 25 0 302 389 1 88 1.05e-30 119
Msa0761830 AT1G16060.4 71.591 88 25 0 302 389 1 88 1.05e-30 119
Msa0761830 AT1G16060.6 71.591 88 25 0 302 389 1 88 1.05e-30 119
Msa0761830 AT1G16060.5 71.591 88 25 0 302 389 1 88 1.05e-30 119
Msa0761830 AT2G28550.4 38.947 190 107 4 229 418 154 334 3.93e-30 120
Msa0761830 AT5G67180.4 47.552 143 67 3 229 371 97 231 2.24e-29 116
Msa0761830 AT2G28550.1 45.122 164 67 4 229 392 154 294 2.46e-29 120
Msa0761830 AT2G28550.2 47.619 126 52 4 229 351 154 268 9.24e-25 103
Msa0761830 AT2G28550.6 47.619 126 52 4 229 351 154 268 9.24e-25 103
Msa0761830 AT2G39250.2 45.545 101 48 2 229 329 109 202 3.35e-22 95.9
Msa0761830 AT2G28550.5 45.802 131 55 2 262 392 14 128 3.63e-22 97.1
Msa0761830 AT2G39250.1 45.545 101 48 2 229 329 109 202 1.74e-21 95.9
Msa0761830 AT5G60120.6 36.000 200 90 8 225 412 157 330 2.24e-18 88.2
Msa0761830 AT5G60120.1 35.500 200 91 7 225 412 157 330 2.62e-18 88.2
Msa0761830 AT5G60120.2 35.821 201 91 8 225 413 157 331 3.78e-18 87.8
Msa0761830 AT5G60120.4 38.415 164 72 6 225 385 157 294 6.87e-18 86.3
Msa0761830 AT5G60120.3 38.415 164 72 6 225 385 157 294 6.87e-18 86.3
Msa0761830 AT5G60120.5 38.415 164 72 6 225 385 157 294 6.87e-18 86.3
Msa0761830 AT3G54990.2 46.226 106 44 3 229 331 123 218 3.69e-17 81.6
Msa0761830 AT1G16060.7 74.138 58 15 0 332 389 9 66 1.60e-16 78.2
Msa0761830 AT3G54990.1 45.631 103 49 2 229 331 123 218 1.76e-16 81.3
Msa0761830 AT1G36060.1 45.000 80 43 1 310 389 125 203 7.27e-11 63.9

Find 132 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCGGCTGAGTTCTATTTA+TGG 0.191348 5_2:-19411024 Msa0761830:CDS
GGCTCTGAAGTTGATGATTC+TGG 0.212206 5_2:-19415048 Msa0761830:CDS
ATTTGCGCCTCGGAACTTTA+TGG 0.216723 5_2:+19411417 None:intergenic
AAGAAGATTGTTGATACTTT+TGG 0.227618 5_2:-19414829 Msa0761830:CDS
GGTGGTGTTGGTGCTGGTGT+TGG 0.253463 5_2:+19415115 None:intergenic
GTTGATGATTCTGGTTCAAT+AGG 0.295762 5_2:-19415039 Msa0761830:CDS
GTGGTGTTGGTGCTGGTGTT+GGG 0.301450 5_2:+19415116 None:intergenic
TTTGGCTGCTCTAAAGTATT+GGG 0.306366 5_2:-19412685 Msa0761830:CDS
CACCACCACCAGGATCTTAC+TGG 0.307769 5_2:-19415099 Msa0761830:CDS
GAAGATATGAAGCCCATCTA+TGG 0.317062 5_2:-19414239 Msa0761830:CDS
GCGAGAATTGGCCGTGTTGC+CGG 0.321909 5_2:-19411789 Msa0761830:CDS
TACAGCTGTTATCCCATAGA+TGG 0.324143 5_2:+19414226 None:intergenic
CGTTTGGCTGCTCCGCCAAC+TGG 0.327995 5_2:+19411334 None:intergenic
GACAACTTGTATACTCATAA+TGG 0.342173 5_2:-19415551 Msa0761830:intron
CTGATTCTAGAGAACGCTTT+AGG 0.342313 5_2:+19411311 None:intergenic
CTACAAATTCAAATAATAAC+TGG 0.346786 5_2:-19415682 Msa0761830:CDS
TAGAGAACGCTTTAGGCGTT+TGG 0.354961 5_2:+19411318 None:intergenic
CGCTGCCGCAGCAGCGGTGG+GGG 0.359052 5_2:-19414935 Msa0761830:CDS
CTCCAGTTATGCAAAAGAAT+TGG 0.364311 5_2:-19412103 Msa0761830:CDS
CCCCACCGCTGCTGCGGCAG+CGG 0.365149 5_2:+19414936 None:intergenic
ACCGCTGCCGCAGCAGCGGT+GGG 0.365347 5_2:-19414937 Msa0761830:CDS
CACCGCTGCCGCAGCAGCGG+TGG 0.368340 5_2:-19414938 Msa0761830:CDS
TTGTTCTTGTTCTTCTGCTT+TGG 0.368361 5_2:+19415290 None:intergenic
TCAAGTCAATAGGACTGATT+TGG 0.370990 5_2:+19411001 None:intergenic
CCTAGAAAATCTTCTAGCTT+TGG 0.385172 5_2:+19415219 None:intergenic
CCTTGTGACACCCCGGTAGA+TGG 0.387528 5_2:+19411921 None:intergenic
GAGATACAAGTCTTTGTTCC+CGG 0.390452 5_2:+19411770 None:intergenic
TTCATGCAGGCATCACCAAC+AGG 0.405289 5_2:-19411823 Msa0761830:intron
GGTAGGTGGCAAGCGAGAAT+TGG 0.417872 5_2:-19411801 Msa0761830:CDS
CCTGGTGGTGGTGTTGGTGC+TGG 0.420049 5_2:+19415109 None:intergenic
TCTGGTTCAATAGGGAAATC+AGG 0.420422 5_2:-19415030 Msa0761830:CDS
GGCCGCAAGATCCTATGATT+TGG 0.422462 5_2:-19412703 Msa0761830:CDS
ATTTGGCTGCTCTAAAGTAT+TGG 0.427354 5_2:-19412686 Msa0761830:CDS
CACCGCTGCTGCGGCAGCGG+TGG 0.428795 5_2:+19414939 None:intergenic
TATGGGATAACAGCTGTAGA+AGG 0.428845 5_2:-19414221 Msa0761830:CDS
GCTGCATGTGGTAATGAGTT+TGG 0.434335 5_2:-19415003 Msa0761830:CDS
AAACACTACTTCAAGTCAAT+AGG 0.436256 5_2:+19410991 None:intergenic
GACTTGTATCTCGGAACATT+CGG 0.436559 5_2:-19411759 Msa0761830:intron
GTTGTTGCTGCTGCTGCTGT+TGG 0.444214 5_2:+19411222 None:intergenic
GTTGGTGCTGGTGTTGGGAG+TGG 0.444240 5_2:+19415121 None:intergenic
CGAGAATTGGCCGTGTTGCC+GGG 0.446110 5_2:-19411788 Msa0761830:CDS
CTTTAGAGCAGCCAAATCAT+AGG 0.447422 5_2:+19412692 None:intergenic
AGAACAATCAATCTGGTTTG+TGG 0.454287 5_2:-19415274 Msa0761830:CDS
TGATTCTGCAGCGCCATCAT+TGG 0.461546 5_2:+19411081 None:intergenic
AGTTTGCAGCACTTTGTTGA+GGG 0.462380 5_2:+19411248 None:intergenic
ATCATCATCACTACTTTGGT+GGG 0.463957 5_2:-19415146 Msa0761830:CDS
TTGATGATTCTGGTTCAATA+GGG 0.466762 5_2:-19415038 Msa0761830:CDS
CTCCACCGCTGCCGCAGCAG+CGG 0.466953 5_2:-19414941 Msa0761830:CDS
CAAGAGGAGCTTCCATCTAC+CGG 0.470693 5_2:-19411933 Msa0761830:CDS
AAGTTTGCAGCACTTTGTTG+AGG 0.477979 5_2:+19411247 None:intergenic
AAGAACAAGAACAATCAATC+TGG 0.483167 5_2:-19415281 Msa0761830:CDS
CCGCTGCCGCAGCAGCGGTG+GGG 0.484825 5_2:-19414936 Msa0761830:CDS
TATGATCATCATCACTACTT+TGG 0.486383 5_2:-19415150 Msa0761830:CDS
CATTGGTTGCTGATGTTGAA+TGG 0.487194 5_2:+19411186 None:intergenic
AGAAAATCTTCTAGCTTTGG+TGG 0.488892 5_2:+19415222 None:intergenic
ATGAGAGGAGTTAGTAGTAA+CGG 0.489643 5_2:+19415598 None:intergenic
AAGGGAAGGTCAAGCTAGGA+AGG 0.489953 5_2:-19414202 Msa0761830:CDS
TGGATATGACAAAGAAGAAA+AGG 0.490955 5_2:-19412724 Msa0761830:CDS
TTGTCACTGCATTTGCGCCT+CGG 0.493838 5_2:+19411407 None:intergenic
CAATTTACCGTGGTGTCACT+AGG 0.494957 5_2:-19414795 Msa0761830:intron
TTTCATGCTAGTACCAATGA+TGG 0.504563 5_2:-19411094 Msa0761830:CDS
CCAGCACCAACACCACCACC+AGG 0.506999 5_2:-19415109 Msa0761830:CDS
TAAGATCCTGGTGGTGGTGT+TGG 0.509685 5_2:+19415103 None:intergenic
TTGGCTGCTCTAAAGTATTG+GGG 0.511428 5_2:-19412684 Msa0761830:CDS
TGGTACTAGCATGAAAATGC+TGG 0.516205 5_2:+19411101 None:intergenic
GATCATCATCACTACTTTGG+TGG 0.521100 5_2:-19415147 Msa0761830:CDS
AGTGACTCTTACAGGGAAGT+TGG 0.524758 5_2:+19412647 None:intergenic
AAATCTTCTAGCTTTGGTGG+TGG 0.525839 5_2:+19415225 None:intergenic
TTTATACTAGGGTGGGGAAA+CGG 0.529987 5_2:-19415315 Msa0761830:intron
CTCAGCCGATGTTGGTGGCA+TGG 0.530259 5_2:+19411036 None:intergenic
AACTGAAGAGGAAGCTGCAG+AGG 0.531137 5_2:-19411455 Msa0761830:CDS
CTTGAAAACCAGTAAGATCC+TGG 0.531357 5_2:+19415091 None:intergenic
TCGCTTGCCACCTACCCTGT+TGG 0.531381 5_2:+19411808 None:intergenic
CTAGCTTTGGTGGTGGAGTG+TGG 0.537501 5_2:+19415232 None:intergenic
AATTCATTGCTTCATTGAGA+AGG 0.538177 5_2:-19412053 Msa0761830:intron
AACAAACTGAGGCATTTCCA+TGG 0.538307 5_2:+19415640 None:intergenic
CCATCTACCGGGGTGTCACA+AGG 0.539236 5_2:-19411921 Msa0761830:intron
AAGAGCTCTCTTCCAGTTGG+CGG 0.542438 5_2:-19411346 Msa0761830:CDS
GAGTCATACGGAATACCATA+GGG 0.544015 5_2:+19411154 None:intergenic
TAGCATGAAAATGCTGGAAG+AGG 0.547125 5_2:+19411107 None:intergenic
CGAGTCATACGGAATACCAT+AGG 0.549420 5_2:+19411153 None:intergenic
CCAATGGCTTCAATCCCCTA+TGG 0.549466 5_2:-19411169 Msa0761830:CDS
TAGAACTCAGCCGATGTTGG+TGG 0.553420 5_2:+19411031 None:intergenic
AAGAGGAGCTTCCATCTACC+GGG 0.554347 5_2:-19411932 Msa0761830:CDS
AAGATATGAAGCCCATCTAT+GGG 0.555486 5_2:-19414238 Msa0761830:CDS
CCATAGGGGATTGAAGCCAT+TGG 0.565801 5_2:+19411169 None:intergenic
TGGCTGCTCTAAAGTATTGG+GGG 0.567440 5_2:-19412683 Msa0761830:CDS
AAATAGAACTCAGCCGATGT+TGG 0.570966 5_2:+19411028 None:intergenic
TATGAGTATACAAGTTGTCA+AGG 0.571623 5_2:+19415555 None:intergenic
GCTAATGGAACTCTGTCGCT+CGG 0.572989 5_2:-19414913 Msa0761830:CDS
GTAGAAGGGAAGGTCAAGCT+AGG 0.574052 5_2:-19414206 Msa0761830:CDS
GCTGCAGAATCAGCAGCGAA+TGG 0.575674 5_2:-19411070 Msa0761830:CDS
TAGTAGTAACGGAAGAAGCT+TGG 0.580648 5_2:+19415609 None:intergenic
AAGAGTAGTGGCTTCTCAAG+AGG 0.582094 5_2:-19411949 Msa0761830:CDS
CAATGCCATGCCACCAACAT+CGG 0.582869 5_2:-19411041 Msa0761830:CDS
CATGATAACAGCAACTGAAG+AGG 0.583603 5_2:-19411467 Msa0761830:intron
ACAGCTGTTATCCCATAGAT+GGG 0.584544 5_2:+19414227 None:intergenic
AGGGAAGTTGGTAGTAGCAG+TGG 0.587800 5_2:+19412659 None:intergenic
GGGAACAAAGACTTGTATCT+CGG 0.588471 5_2:-19411768 Msa0761830:CDS
CTTTATGGCCGCAATGTCGT+AGG 0.589259 5_2:+19411432 None:intergenic
GGCATCACCAACAGGGTAGG+TGG 0.595697 5_2:-19411815 Msa0761830:CDS
TATTCCGTATGACTCGAATA+CGG 0.597263 5_2:-19411146 Msa0761830:CDS
ATGGGATAACAGCTGTAGAA+GGG 0.605627 5_2:-19414220 Msa0761830:CDS
AGGGAAGGTCAAGCTAGGAA+GGG 0.607036 5_2:-19414201 Msa0761830:CDS
ACAAACTGAGGCATTTCCAT+GGG 0.608871 5_2:+19415641 None:intergenic
GCTATCAGAATCAGCAGCAA+CGG 0.609281 5_2:+19414855 None:intergenic
ATGAAGAGCTCTCTTCCAGT+TGG 0.609750 5_2:-19411349 Msa0761830:CDS
TGCAGAGGCCTACGACATTG+CGG 0.609893 5_2:-19411440 Msa0761830:CDS
AGCCAAATCATAGGATCTTG+CGG 0.610099 5_2:+19412701 None:intergenic
TCTTCTTGCAGGAAGAGTAG+TGG 0.611461 5_2:-19411961 Msa0761830:intron
GATAACAGCTGTAGAAGGGA+AGG 0.621863 5_2:-19414216 Msa0761830:CDS
CAAGCTAGGAAGGGTCGTCA+AGG 0.628154 5_2:-19414192 Msa0761830:intron
GCAGAATCAGCAGCGAATGG+AGG 0.629078 5_2:-19411067 Msa0761830:CDS
GCAGGCATCACCAACAGGGT+AGG 0.639876 5_2:-19411818 Msa0761830:intron
CATTCAACATCAGCAACCAA+TGG 0.641420 5_2:-19411185 Msa0761830:CDS
AACCAGTAAGATCCTGGTGG+TGG 0.642479 5_2:+19415097 None:intergenic
GGGAAGTTGGTAGTAGCAGT+GGG 0.646966 5_2:+19412660 None:intergenic
TAAGCCGTATTCGAGTCATA+CGG 0.655944 5_2:+19411142 None:intergenic
AGTCTTTGTTCCCGGCAACA+CGG 0.656378 5_2:+19411778 None:intergenic
TTACAAACCTTGTGACACCC+CGG 0.662260 5_2:+19411914 None:intergenic
AAATCAGGACAAGCTGCATG+TGG 0.667044 5_2:-19415015 Msa0761830:CDS
TCATCATCACTACTTTGGTG+GGG 0.667284 5_2:-19415145 Msa0761830:CDS
TCATGCAGGCATCACCAACA+GGG 0.679915 5_2:-19411822 Msa0761830:intron
ATTGCGGCCATAAAGTTCCG+AGG 0.680301 5_2:-19411424 Msa0761830:CDS
CAGAGAACTTCAATTTACCG+TGG 0.687455 5_2:-19414805 Msa0761830:CDS
TGGTCATATTGAACAAACTG+AGG 0.687500 5_2:+19415629 None:intergenic
GTGATGATGATCATACATGT+TGG 0.709269 5_2:+19415158 None:intergenic
TAGTATACCTAGTGACACCA+CGG 0.710511 5_2:+19414788 None:intergenic
TGAGATGAACAGATATGACG+TGG 0.711855 5_2:-19411380 Msa0761830:CDS
AGAGGAGCTTCCATCTACCG+GGG 0.715037 5_2:-19411931 Msa0761830:CDS
AGTCATACGGAATACCATAG+GGG 0.731791 5_2:+19411155 None:intergenic
GAAAACCAGTAAGATCCTGG+TGG 0.756363 5_2:+19415094 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATGATTTTAATTTG+GGG - chr5_2:19412419-19412438 Msa0761830:intron 10.0%
!! TGTTACTATTAAAATTAAAA+GGG - chr5_2:19413018-19413037 Msa0761830:intron 10.0%
!!! AACATACTTTTATTTTATTT+TGG - chr5_2:19413667-19413686 Msa0761830:intron 10.0%
!!! TTAGATTATAAAGTAATTTT+TGG - chr5_2:19413703-19413722 Msa0761830:intron 10.0%
!!! AATTTTATTTCTTAATCTAA+CGG + chr5_2:19414386-19414405 None:intergenic 10.0%
!! AAAAACAATAACAATATATA+AGG + chr5_2:19414565-19414584 None:intergenic 10.0%
!! AACAATAAAAAAAGATATAA+AGG + chr5_2:19415070-19415089 None:intergenic 10.0%
!!! TTGATAAATTGATAATATTA+TGG - chr5_2:19415123-19415142 Msa0761830:CDS 10.0%
!! GATTATAATTAAGATTAAGA+TGG + chr5_2:19411184-19411203 None:intergenic 15.0%
!! AAAAAAACAAATATTCATGT+AGG + chr5_2:19411309-19411328 None:intergenic 15.0%
!!! TTATTTATTTTTGAATCCAA+AGG - chr5_2:19412045-19412064 Msa0761830:intron 15.0%
!!! ATAATATATGCTTTTTCATT+TGG - chr5_2:19412764-19412783 Msa0761830:intron 15.0%
!!! GTGTTACTATTAAAATTAAA+AGG - chr5_2:19413017-19413036 Msa0761830:intron 15.0%
!!! TTTATATTGTTTTAGAGATA+TGG - chr5_2:19413917-19413936 Msa0761830:intron 15.0%
!! AAAGATTATTCTTAATTCAA+TGG + chr5_2:19414139-19414158 None:intergenic 15.0%
!!! AAATCCATTTTGAAATTATA+AGG - chr5_2:19414460-19414479 Msa0761830:intron 15.0%
!!! GTATTTGTTACAATTTTAAT+AGG + chr5_2:19414691-19414710 None:intergenic 15.0%
!!! GTTTTTTGTTTAACATTTTT+TGG - chr5_2:19414858-19414877 Msa0761830:CDS 15.0%
!! TATTAGAATACATATATTAC+AGG - chr5_2:19414987-19415006 Msa0761830:CDS 15.0%
!!! ATCTTTTTTTATTGTTATGT+AGG - chr5_2:19415074-19415093 Msa0761830:CDS 15.0%
!! CTACAAATTCAAATAATAAC+TGG - chr5_2:19411022-19411041 Msa0761830:CDS 20.0%
!! CAAAGACATTTGATATATTA+GGG + chr5_2:19411211-19411230 None:intergenic 20.0%
!! ACAAAGACATTTGATATATT+AGG + chr5_2:19411212-19411231 None:intergenic 20.0%
!!! TTGTTTTGACTATTTATACT+AGG - chr5_2:19411377-19411396 Msa0761830:CDS 20.0%
!!! TGTTTTGACTATTTATACTA+GGG - chr5_2:19411378-19411397 Msa0761830:CDS 20.0%
!! ACAAATAAAAAAAGATCCTT+TGG + chr5_2:19412064-19412083 None:intergenic 20.0%
!!! ATTTATTGACTATGTTATGT+TGG - chr5_2:19412275-19412294 Msa0761830:intron 20.0%
!!! AAAAATTGTCTATTTCTCAT+TGG + chr5_2:19413355-19413374 None:intergenic 20.0%
!! TCATGTTAACAAAATACTAT+TGG + chr5_2:19413416-19413435 None:intergenic 20.0%
!! AGATAGAGAGATAAAATTAA+AGG - chr5_2:19413607-19413626 Msa0761830:intron 20.0%
!! GATAGAGAGATAAAATTAAA+GGG - chr5_2:19413608-19413627 Msa0761830:intron 20.0%
!!! TATGATTTTTCTTTGTACAT+TGG + chr5_2:19414097-19414116 None:intergenic 20.0%
!! AATGTACAAAGAAAAATCAT+AGG - chr5_2:19414096-19414115 Msa0761830:intron 20.0%
!! TTCTTTGTGTAACAATTATA+TGG + chr5_2:19414223-19414242 None:intergenic 20.0%
!! CAATCCTTATAATTTCAAAA+TGG + chr5_2:19414467-19414486 None:intergenic 20.0%
!!! TCAATTCTTATTTAATGGAT+AGG + chr5_2:19414504-19414523 None:intergenic 20.0%
!!! TTGTTTTTTTCCTATATCTT+AGG - chr5_2:19414577-19414596 Msa0761830:intron 20.0%
!! ATATGTATTCTAATACTTGA+AGG + chr5_2:19414982-19415001 None:intergenic 20.0%
!!! ACATAAAAAGTGTAAATGTA+TGG - chr5_2:19415015-19415034 Msa0761830:CDS 20.0%
!!! AATGTATGGTTTTTAAACAA+TGG - chr5_2:19415029-19415048 Msa0761830:CDS 20.0%
!!! GATACTATTTAAAATGGTAA+TGG + chr5_2:19415153-19415172 None:intergenic 20.0%
!! TGACAAGATACTATTTAAAA+TGG + chr5_2:19415159-19415178 None:intergenic 20.0%
! AAACAAATATTCATGTAGGT+CGG + chr5_2:19411305-19411324 None:intergenic 25.0%
!! AAGAAGATTGTTGATACTTT+TGG - chr5_2:19411875-19411894 Msa0761830:intron 25.0%
! TTGTTTGATTGAAAATCCAA+AGG - chr5_2:19412080-19412099 Msa0761830:CDS 25.0%
! AATTAAACAGTGTTTGATTC+TGG - chr5_2:19412603-19412622 Msa0761830:intron 25.0%
! ATTAAACAGTGTTTGATTCT+GGG - chr5_2:19412604-19412623 Msa0761830:intron 25.0%
!!! TAGTACTATGATTGATTTGA+TGG - chr5_2:19412699-19412718 Msa0761830:CDS 25.0%
! CACAGTTATGAATATTAGTA+CGG + chr5_2:19412986-19413005 None:intergenic 25.0%
!! TACTTTAACTTACACTTATG+AGG - chr5_2:19413146-19413165 Msa0761830:intron 25.0%
!!! CAGATATGTTTTTTTGACTA+TGG - chr5_2:19413385-19413404 Msa0761830:intron 25.0%
! ATGAGTTCTTGTAGTAAAAA+AGG - chr5_2:19413512-19413531 Msa0761830:intron 25.0%
! TGAGTTCTTGTAGTAAAAAA+GGG - chr5_2:19413513-19413532 Msa0761830:intron 25.0%
! AAATTTGACTATATGCCATA+AGG - chr5_2:19413731-19413750 Msa0761830:intron 25.0%
! AATTTGACTATATGCCATAA+GGG - chr5_2:19413732-19413751 Msa0761830:intron 25.0%
! AATATCAAATATCACCCTTA+TGG + chr5_2:19413749-19413768 None:intergenic 25.0%
! TGTAACATTGTAAATTGTCA+TGG - chr5_2:19413944-19413963 Msa0761830:intron 25.0%
! TTAAGATACCAAATTCACAT+TGG + chr5_2:19414306-19414325 None:intergenic 25.0%
!! CAGTCTCAATTCTTATTTAA+TGG + chr5_2:19414509-19414528 None:intergenic 25.0%
! TATATAAGGTAAGTCTTGAA+AGG + chr5_2:19414551-19414570 None:intergenic 25.0%
! AACAAATACTTATCATGATC+AGG - chr5_2:19414702-19414721 Msa0761830:intron 25.0%
!!! CATTTACACTTTTTATGTCA+TGG + chr5_2:19415013-19415032 None:intergenic 25.0%
TATGAGTATACAAGTTGTCA+AGG + chr5_2:19411152-19411171 None:intergenic 30.0%
GACAACTTGTATACTCATAA+TGG - chr5_2:19411153-19411172 Msa0761830:CDS 30.0%
TTTGACTATTTATACTAGGG+TGG - chr5_2:19411381-19411400 Msa0761830:CDS 30.0%
TTGACTATTTATACTAGGGT+GGG - chr5_2:19411382-19411401 Msa0761830:CDS 30.0%
AAGAACAAGAACAATCAATC+TGG - chr5_2:19411423-19411442 Msa0761830:CDS 30.0%
TATGATCATCATCACTACTT+TGG - chr5_2:19411554-19411573 Msa0761830:intron 30.0%
!! TTGATGATTCTGGTTCAATA+GGG - chr5_2:19411666-19411685 Msa0761830:intron 30.0%
!! TAGCTATTGATTTACTCAGT+TGG - chr5_2:19412152-19412171 Msa0761830:intron 30.0%
TCAAGTTCGTAGATTTGATT+TGG - chr5_2:19412315-19412334 Msa0761830:intron 30.0%
!!! TTTTAATTTGGGGATTTTGC+AGG - chr5_2:19412429-19412448 Msa0761830:intron 30.0%
ATGCATTGAAGTTGCATTAA+TGG - chr5_2:19412644-19412663 Msa0761830:intron 30.0%
! ATTAATGGTCTTAGAGTTGT+AGG - chr5_2:19412659-19412678 Msa0761830:CDS 30.0%
ATAGTACTAATAAGTAACCC+AGG + chr5_2:19412688-19412707 None:intergenic 30.0%
!! CTATGATTGATTTGATGGTA+TGG - chr5_2:19412704-19412723 Msa0761830:CDS 30.0%
TCTGTTCAGATAGTTATGAA+GGG - chr5_2:19412896-19412915 Msa0761830:intron 30.0%
TTAGTACGGAATTAATCACT+TGG + chr5_2:19412972-19412991 None:intergenic 30.0%
ACAAATTTCAATACAGTGAG+TGG + chr5_2:19413127-19413146 None:intergenic 30.0%
TGGACAAAATATGAACATAG+AGG + chr5_2:19413335-19413354 None:intergenic 30.0%
GAGTTCTTGTAGTAAAAAAG+GGG - chr5_2:19413514-19413533 Msa0761830:intron 30.0%
AGTTCTTGTAGTAAAAAAGG+GGG - chr5_2:19413515-19413534 Msa0761830:intron 30.0%
GATAGAAAACTACTGTACAT+TGG + chr5_2:19413569-19413588 None:intergenic 30.0%
AGGGTGATATTTGATATTCT+TGG - chr5_2:19413751-19413770 Msa0761830:intron 30.0%
TGGATATGACAAAGAAGAAA+AGG - chr5_2:19413980-19413999 Msa0761830:intron 30.0%
ATATGGTATATGTTCACACA+TGG + chr5_2:19414206-19414225 None:intergenic 30.0%
TGTTACACAAAGAATGTGTT+TGG - chr5_2:19414229-19414248 Msa0761830:CDS 30.0%
TGAAAGAAATGTGCTTTACT+TGG - chr5_2:19414254-19414273 Msa0761830:CDS 30.0%
CTTGGTACATAAAAATACTG+AGG - chr5_2:19414272-19414291 Msa0761830:intron 30.0%
ACATAAAAATACTGAGGCTA+AGG - chr5_2:19414278-19414297 Msa0761830:intron 30.0%
! TCTTATTTAATGGATAGGCA+TGG + chr5_2:19414499-19414518 None:intergenic 30.0%
ATAAGAATTGAGACTGTGTA+TGG - chr5_2:19414513-19414532 Msa0761830:intron 30.0%
! TTCCAATTCTTTTGCATAAC+TGG + chr5_2:19414606-19414625 None:intergenic 30.0%
AATTCATTGCTTCATTGAGA+AGG - chr5_2:19414651-19414670 Msa0761830:intron 30.0%
CATGATCAGGTACTAAAATT+TGG - chr5_2:19414715-19414734 Msa0761830:intron 30.0%
!!! TAACATTTTTTGGTTCATGC+AGG - chr5_2:19414868-19414887 Msa0761830:CDS 30.0%
! GTATGGTTTTTAAACAATGG+TGG - chr5_2:19415032-19415051 Msa0761830:CDS 30.0%
! ATCATTTTCACTTTCACCCA+TGG - chr5_2:19411047-19411066 Msa0761830:CDS 35.0%
TGGTCATATTGAACAAACTG+AGG + chr5_2:19411078-19411097 None:intergenic 35.0%
ATGAGAGGAGTTAGTAGTAA+CGG + chr5_2:19411109-19411128 None:intergenic 35.0%
!! GTGATGATGATTTTGATGAG+AGG + chr5_2:19411124-19411143 None:intergenic 35.0%
!! CTTTTCTAGCCGTTGTTAAA+CGG + chr5_2:19411270-19411289 None:intergenic 35.0%
TGACTATTTATACTAGGGTG+GGG - chr5_2:19411383-19411402 Msa0761830:CDS 35.0%
TTGTTCTTGTTCTTCTGCTT+TGG + chr5_2:19411417-19411436 None:intergenic 35.0%
! AGAACAATCAATCTGGTTTG+TGG - chr5_2:19411430-19411449 Msa0761830:CDS 35.0%
!! AGAAAATCTTCTAGCTTTGG+TGG + chr5_2:19411485-19411504 None:intergenic 35.0%
!! CCTAGAAAATCTTCTAGCTT+TGG + chr5_2:19411488-19411507 None:intergenic 35.0%
! CCAAAGCTAGAAGATTTTCT+AGG - chr5_2:19411485-19411504 Msa0761830:intron 35.0%
! GTGATGATGATCATACATGT+TGG + chr5_2:19411549-19411568 None:intergenic 35.0%
ATCATCATCACTACTTTGGT+GGG - chr5_2:19411558-19411577 Msa0761830:intron 35.0%
!!! GCTTTTTCAAACAACAACTC+TGG - chr5_2:19411635-19411654 Msa0761830:intron 35.0%
!! GTTGATGATTCTGGTTCAAT+AGG - chr5_2:19411665-19411684 Msa0761830:intron 35.0%
AGTGACAACAAAAGATCCTT+TGG + chr5_2:19412099-19412118 None:intergenic 35.0%
!! GATCTTTTGTTGTCACTGTT+TGG - chr5_2:19412102-19412121 Msa0761830:CDS 35.0%
AAGATATGAAGCCCATCTAT+GGG - chr5_2:19412466-19412485 Msa0761830:intron 35.0%
GTCTGTTCAGATAGTTATGA+AGG - chr5_2:19412895-19412914 Msa0761830:intron 35.0%
!! ATCTTTATAGCTTGCTACGT+AGG + chr5_2:19413591-19413610 None:intergenic 35.0%
AGACTGTAGATGAGTCAAAA+AGG + chr5_2:19413821-19413840 None:intergenic 35.0%
TGACTCATCTACAGTCTATT+TGG - chr5_2:19413824-19413843 Msa0761830:intron 35.0%
GACTCATCTACAGTCTATTT+GGG - chr5_2:19413825-19413844 Msa0761830:intron 35.0%
CATTGTAAATTGTCATGGCA+TGG - chr5_2:19413949-19413968 Msa0761830:intron 35.0%
!! ATTTGGCTGCTCTAAAGTAT+TGG - chr5_2:19414018-19414037 Msa0761830:intron 35.0%
!! TTTGGCTGCTCTAAAGTATT+GGG - chr5_2:19414019-19414038 Msa0761830:intron 35.0%
ACAAAGAAGTGACTCTTACA+GGG + chr5_2:19414067-19414086 None:intergenic 35.0%
AACAAAGAAGTGACTCTTAC+AGG + chr5_2:19414068-19414087 None:intergenic 35.0%
ATCAACTTTACAGTGCAGTT+TGG + chr5_2:19414434-19414453 None:intergenic 35.0%
TAACTGGAGACCTAAGATAT+AGG + chr5_2:19414590-19414609 None:intergenic 35.0%
CTCCAGTTATGCAAAAGAAT+TGG - chr5_2:19414601-19414620 Msa0761830:intron 35.0%
ATTTGGTTATCTCTTCTTGC+AGG - chr5_2:19414732-19414751 Msa0761830:intron 35.0%
TATTCCGTATGACTCGAATA+CGG - chr5_2:19415558-19415577 Msa0761830:CDS 35.0%
TTTCATGCTAGTACCAATGA+TGG - chr5_2:19415610-19415629 Msa0761830:CDS 35.0%
! ACAAACTGAGGCATTTCCAT+GGG + chr5_2:19411066-19411085 None:intergenic 40.0%
! AACAAACTGAGGCATTTCCA+TGG + chr5_2:19411067-19411086 None:intergenic 40.0%
! TAGTAGTAACGGAAGAAGCT+TGG + chr5_2:19411098-19411117 None:intergenic 40.0%
GACTTAACGCCGTTTAACAA+CGG - chr5_2:19411258-19411277 Msa0761830:CDS 40.0%
TTTATACTAGGGTGGGGAAA+CGG - chr5_2:19411389-19411408 Msa0761830:CDS 40.0%
!! AAATCTTCTAGCTTTGGTGG+TGG + chr5_2:19411482-19411501 None:intergenic 40.0%
GATCATCATCACTACTTTGG+TGG - chr5_2:19411557-19411576 Msa0761830:intron 40.0%
TCATCATCACTACTTTGGTG+GGG - chr5_2:19411559-19411578 Msa0761830:intron 40.0%
CTTGAAAACCAGTAAGATCC+TGG + chr5_2:19411616-19411635 None:intergenic 40.0%
! TCTGGTTCAATAGGGAAATC+AGG - chr5_2:19411674-19411693 Msa0761830:intron 40.0%
! GGCAACAATAGCATTTTCCT+CGG + chr5_2:19411831-19411850 None:intergenic 40.0%
CAGAGAACTTCAATTTACCG+TGG - chr5_2:19411899-19411918 Msa0761830:intron 40.0%
TAGTATACCTAGTGACACCA+CGG + chr5_2:19411919-19411938 None:intergenic 40.0%
GAAGATATGAAGCCCATCTA+TGG - chr5_2:19412465-19412484 Msa0761830:intron 40.0%
ACAGCTGTTATCCCATAGAT+GGG + chr5_2:19412480-19412499 None:intergenic 40.0%
TACAGCTGTTATCCCATAGA+TGG + chr5_2:19412481-19412500 None:intergenic 40.0%
TATGGGATAACAGCTGTAGA+AGG - chr5_2:19412483-19412502 Msa0761830:intron 40.0%
ATGGGATAACAGCTGTAGAA+GGG - chr5_2:19412484-19412503 Msa0761830:intron 40.0%
ATTCACATGGTGCAGCAAAA+TGG + chr5_2:19412856-19412875 None:intergenic 40.0%
! TTTTGCTGCACCATGTGAAT+TGG - chr5_2:19412856-19412875 Msa0761830:intron 40.0%
TTTGCTGCACCATGTGAATT+GGG - chr5_2:19412857-19412876 Msa0761830:intron 40.0%
CTGAACAGACAAGAAAGCAA+AGG + chr5_2:19412885-19412904 None:intergenic 40.0%
AATACAGTGAGTGGTGTGAT+AGG + chr5_2:19413118-19413137 None:intergenic 40.0%
AGCGTTCACTGTTACATGAA+TGG - chr5_2:19413175-19413194 Msa0761830:intron 40.0%
ATTGCGCATGCAAATGTGAT+TGG - chr5_2:19413642-19413661 Msa0761830:intron 40.0%
!! TTCTTGGCTTTTCCTTTGCA+TGG - chr5_2:19413767-19413786 Msa0761830:intron 40.0%
! ATTGTCATGGCATGGTTTGT+AGG - chr5_2:19413957-19413976 Msa0761830:intron 40.0%
AGCCAAATCATAGGATCTTG+CGG + chr5_2:19414006-19414025 None:intergenic 40.0%
!! CTTTAGAGCAGCCAAATCAT+AGG + chr5_2:19414015-19414034 None:intergenic 40.0%
!! TTGGCTGCTCTAAAGTATTG+GGG - chr5_2:19414020-19414039 Msa0761830:intron 40.0%
! CTAAGGTGCCAATGTGAATT+TGG - chr5_2:19414295-19414314 Msa0761830:intron 40.0%
AGTGTACGAATTGTGTTGCA+AGG - chr5_2:19414836-19414855 Msa0761830:CDS 40.0%
GAGATACAAGTCTTTGTTCC+CGG + chr5_2:19414937-19414956 None:intergenic 40.0%
GGGAACAAAGACTTGTATCT+CGG - chr5_2:19414936-19414955 Msa0761830:CDS 40.0%
GACTTGTATCTCGGAACATT+CGG - chr5_2:19414945-19414964 Msa0761830:CDS 40.0%
CATGATAACAGCAACTGAAG+AGG - chr5_2:19415237-19415256 Msa0761830:CDS 40.0%
TGAGATGAACAGATATGACG+TGG - chr5_2:19415324-19415343 Msa0761830:intron 40.0%
! CTGATTCTAGAGAACGCTTT+AGG + chr5_2:19415396-19415415 None:intergenic 40.0%
AGTTTGCAGCACTTTGTTGA+GGG + chr5_2:19415459-19415478 None:intergenic 40.0%
AAGTTTGCAGCACTTTGTTG+AGG + chr5_2:19415460-19415479 None:intergenic 40.0%
! CATTGGTTGCTGATGTTGAA+TGG + chr5_2:19415521-19415540 None:intergenic 40.0%
CATTCAACATCAGCAACCAA+TGG - chr5_2:19415519-19415538 Msa0761830:intron 40.0%
AGTCATACGGAATACCATAG+GGG + chr5_2:19415552-19415571 None:intergenic 40.0%
GAGTCATACGGAATACCATA+GGG + chr5_2:19415553-19415572 None:intergenic 40.0%
TAAGCCGTATTCGAGTCATA+CGG + chr5_2:19415565-19415584 None:intergenic 40.0%
TAGCATGAAAATGCTGGAAG+AGG + chr5_2:19415600-19415619 None:intergenic 40.0%
TGGTACTAGCATGAAAATGC+TGG + chr5_2:19415606-19415625 None:intergenic 40.0%
AAATAGAACTCAGCCGATGT+TGG + chr5_2:19415679-19415698 None:intergenic 40.0%
! CATCGGCTGAGTTCTATTTA+TGG - chr5_2:19415680-19415699 Msa0761830:CDS 40.0%
GAAAACCAGTAAGATCCTGG+TGG + chr5_2:19411613-19411632 None:intergenic 45.0%
!! GGCTCTGAAGTTGATGATTC+TGG - chr5_2:19411656-19411675 Msa0761830:intron 45.0%
AAATCAGGACAAGCTGCATG+TGG - chr5_2:19411689-19411708 Msa0761830:intron 45.0%
! GCTGCATGTGGTAATGAGTT+TGG - chr5_2:19411701-19411720 Msa0761830:intron 45.0%
GCTATCAGAATCAGCAGCAA+CGG + chr5_2:19411852-19411871 None:intergenic 45.0%
!! CAATTTACCGTGGTGTCACT+AGG - chr5_2:19411909-19411928 Msa0761830:intron 45.0%
! TTTTGCAGGCATAGATGGAC+AGG - chr5_2:19412443-19412462 Msa0761830:intron 45.0%
GATAACAGCTGTAGAAGGGA+AGG - chr5_2:19412488-19412507 Msa0761830:intron 45.0%
TCTTAGAGTTGTAGGACACC+TGG - chr5_2:19412667-19412686 Msa0761830:CDS 45.0%
CTTAGAGTTGTAGGACACCT+GGG - chr5_2:19412668-19412687 Msa0761830:CDS 45.0%
CCTCTCTCAGAACAAACTCA+CGG - chr5_2:19413211-19413230 Msa0761830:intron 45.0%
CTCTCTCAGAACAAACTCAC+GGG - chr5_2:19413212-19413231 Msa0761830:intron 45.0%
!! TGGCTGCTCTAAAGTATTGG+GGG - chr5_2:19414021-19414040 Msa0761830:intron 45.0%
AGTGACTCTTACAGGGAAGT+TGG + chr5_2:19414060-19414079 None:intergenic 45.0%
TCTTCTTGCAGGAAGAGTAG+TGG - chr5_2:19414743-19414762 Msa0761830:intron 45.0%
AAGAGTAGTGGCTTCTCAAG+AGG - chr5_2:19414755-19414774 Msa0761830:intron 45.0%
TTACAAACCTTGTGACACCC+CGG + chr5_2:19414793-19414812 None:intergenic 45.0%
ATTTGCGCCTCGGAACTTTA+TGG + chr5_2:19415290-19415309 None:intergenic 45.0%
ATGAAGAGCTCTCTTCCAGT+TGG - chr5_2:19415355-19415374 Msa0761830:intron 45.0%
! TAGAGAACGCTTTAGGCGTT+TGG + chr5_2:19415389-19415408 None:intergenic 45.0%
CGAGTCATACGGAATACCAT+AGG + chr5_2:19415554-19415573 None:intergenic 45.0%
!!! ATTTATTTATGATTTTAATT+TGG - chr5_2:19412417-19412436 Msa0761830:intron 5.0%
!!! TTTATTTATGATTTTAATTT+GGG - chr5_2:19412418-19412437 Msa0761830:intron 5.0%
!!! TTTTCTATAATATTTTTTTA+TGG - chr5_2:19412555-19412574 Msa0761830:intron 5.0%
!! TAAGATCCTGGTGGTGGTGT+TGG + chr5_2:19411604-19411623 None:intergenic 50.0%
AACCAGTAAGATCCTGGTGG+TGG + chr5_2:19411610-19411629 None:intergenic 50.0%
GCTAATGGAACTCTGTCGCT+CGG - chr5_2:19411791-19411810 Msa0761830:CDS 50.0%
! GGGGATTTTGCAGGCATAGA+TGG - chr5_2:19412438-19412457 Msa0761830:intron 50.0%
GTAGAAGGGAAGGTCAAGCT+AGG - chr5_2:19412498-19412517 Msa0761830:intron 50.0%
AAGGGAAGGTCAAGCTAGGA+AGG - chr5_2:19412502-19412521 Msa0761830:intron 50.0%
AGGGAAGGTCAAGCTAGGAA+GGG - chr5_2:19412503-19412522 Msa0761830:intron 50.0%
CACATGGTGCAGCAAAATGG+CGG + chr5_2:19412853-19412872 None:intergenic 50.0%
!! GCAAAGGCACCCAATTCACA+TGG + chr5_2:19412869-19412888 None:intergenic 50.0%
GAGTGGTGTGATAGGTGATG+TGG + chr5_2:19413110-19413129 None:intergenic 50.0%
!! CCGTGAGTTTGTTCTGAGAG+AGG + chr5_2:19413214-19413233 None:intergenic 50.0%
! GTCATGGCATGGTTTGTAGG+TGG - chr5_2:19413960-19413979 Msa0761830:intron 50.0%
GGCCGCAAGATCCTATGATT+TGG - chr5_2:19414001-19414020 Msa0761830:intron 50.0%
!! GGGAAGTTGGTAGTAGCAGT+GGG + chr5_2:19414047-19414066 None:intergenic 50.0%
!! AGGGAAGTTGGTAGTAGCAG+TGG + chr5_2:19414048-19414067 None:intergenic 50.0%
CAAGAGGAGCTTCCATCTAC+CGG - chr5_2:19414771-19414790 Msa0761830:intron 50.0%
AAGAGGAGCTTCCATCTACC+GGG - chr5_2:19414772-19414791 Msa0761830:intron 50.0%
TTCATGCAGGCATCACCAAC+AGG - chr5_2:19414881-19414900 Msa0761830:CDS 50.0%
TCATGCAGGCATCACCAACA+GGG - chr5_2:19414882-19414901 Msa0761830:CDS 50.0%
AGTCTTTGTTCCCGGCAACA+CGG + chr5_2:19414929-19414948 None:intergenic 50.0%
AACTGAAGAGGAAGCTGCAG+AGG - chr5_2:19415249-19415268 Msa0761830:CDS 50.0%
CTTTATGGCCGCAATGTCGT+AGG + chr5_2:19415275-19415294 None:intergenic 50.0%
ATTGCGGCCATAAAGTTCCG+AGG - chr5_2:19415280-19415299 Msa0761830:CDS 50.0%
TTGTCACTGCATTTGCGCCT+CGG + chr5_2:19415300-19415319 None:intergenic 50.0%
AAGAGCTCTCTTCCAGTTGG+CGG - chr5_2:19415358-19415377 Msa0761830:intron 50.0%
CCATAGGGGATTGAAGCCAT+TGG + chr5_2:19415538-19415557 None:intergenic 50.0%
CCAATGGCTTCAATCCCCTA+TGG - chr5_2:19415535-19415554 Msa0761830:intron 50.0%
TGATTCTGCAGCGCCATCAT+TGG + chr5_2:19415626-19415645 None:intergenic 50.0%
CAATGCCATGCCACCAACAT+CGG - chr5_2:19415663-19415682 Msa0761830:CDS 50.0%
TAGAACTCAGCCGATGTTGG+TGG + chr5_2:19415676-19415695 None:intergenic 50.0%
!! CTAGCTTTGGTGGTGGAGTG+TGG + chr5_2:19411475-19411494 None:intergenic 55.0%
!! GTGGTGTTGGTGCTGGTGTT+GGG + chr5_2:19411591-19411610 None:intergenic 55.0%
CACCACCACCAGGATCTTAC+TGG - chr5_2:19411605-19411624 Msa0761830:intron 55.0%
CAAGCTAGGAAGGGTCGTCA+AGG - chr5_2:19412512-19412531 Msa0761830:intron 55.0%
CCAAGTGACGGTCCATGCAA+AGG + chr5_2:19413782-19413801 None:intergenic 55.0%
CCTTTGCATGGACCGTCACT+TGG - chr5_2:19413779-19413798 Msa0761830:intron 55.0%
!! ACCGTCACTTGGTGCATTGC+TGG - chr5_2:19413790-19413809 Msa0761830:intron 55.0%
GCCAGCAATGCACCAAGTGA+CGG + chr5_2:19413794-19413813 None:intergenic 55.0%
AGAGGAGCTTCCATCTACCG+GGG - chr5_2:19414773-19414792 Msa0761830:intron 55.0%
GGTAGGTGGCAAGCGAGAAT+TGG - chr5_2:19414903-19414922 Msa0761830:CDS 55.0%
TGCAGAGGCCTACGACATTG+CGG - chr5_2:19415264-19415283 Msa0761830:CDS 55.0%
GTTGTTGCTGCTGCTGCTGT+TGG + chr5_2:19415485-19415504 None:intergenic 55.0%
GCTGCAGAATCAGCAGCGAA+TGG - chr5_2:19415634-19415653 Msa0761830:CDS 55.0%
GCAGAATCAGCAGCGAATGG+AGG - chr5_2:19415637-19415656 Msa0761830:CDS 55.0%
!! GTTGGTGCTGGTGTTGGGAG+TGG + chr5_2:19411586-19411605 None:intergenic 60.0%
!! GGTGGTGTTGGTGCTGGTGT+TGG + chr5_2:19411592-19411611 None:intergenic 60.0%
CCTTGTGACACCCCGGTAGA+TGG + chr5_2:19414786-19414805 None:intergenic 60.0%
! CCATCTACCGGGGTGTCACA+AGG - chr5_2:19414783-19414802 Msa0761830:intron 60.0%
GCAGGCATCACCAACAGGGT+AGG - chr5_2:19414886-19414905 Msa0761830:CDS 60.0%
GGCATCACCAACAGGGTAGG+TGG - chr5_2:19414889-19414908 Msa0761830:CDS 60.0%
TCGCTTGCCACCTACCCTGT+TGG + chr5_2:19414899-19414918 None:intergenic 60.0%
GCGAGAATTGGCCGTGTTGC+CGG - chr5_2:19414915-19414934 Msa0761830:CDS 60.0%
CGAGAATTGGCCGTGTTGCC+GGG - chr5_2:19414916-19414935 Msa0761830:CDS 60.0%
!! CTCAGCCGATGTTGGTGGCA+TGG + chr5_2:19415671-19415690 None:intergenic 60.0%
!! CCTGGTGGTGGTGTTGGTGC+TGG + chr5_2:19411598-19411617 None:intergenic 65.0%
CCAGCACCAACACCACCACC+AGG - chr5_2:19411595-19411614 Msa0761830:intron 65.0%
ATTAGCCCCCACCGCTGCTG+CGG + chr5_2:19411777-19411796 None:intergenic 65.0%
CGGTGTAGCGCAGAGTTCCG+AGG - chr5_2:19411811-19411830 Msa0761830:CDS 65.0%
CGTTTGGCTGCTCCGCCAAC+TGG + chr5_2:19415373-19415392 None:intergenic 65.0%
GCAGCAGCGGTGGGGGCTAA+TGG - chr5_2:19411776-19411795 Msa0761830:CDS 70.0%
CTCCACCGCTGCCGCAGCAG+CGG - chr5_2:19411763-19411782 Msa0761830:CDS 75.0%
ACCGCTGCCGCAGCAGCGGT+GGG - chr5_2:19411767-19411786 Msa0761830:CDS 75.0%
! CACCGCTGCTGCGGCAGCGG+TGG + chr5_2:19411768-19411787 None:intergenic 80.0%
! CACCGCTGCCGCAGCAGCGG+TGG - chr5_2:19411766-19411785 Msa0761830:CDS 80.0%
! CCCCACCGCTGCTGCGGCAG+CGG + chr5_2:19411771-19411790 None:intergenic 80.0%
! CCGCTGCCGCAGCAGCGGTG+GGG - chr5_2:19411768-19411787 Msa0761830:CDS 80.0%
! CGCTGCCGCAGCAGCGGTGG+GGG - chr5_2:19411769-19411788 Msa0761830:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 19411006 19415720 19411006 ID=Msa0761830;Name=Msa0761830
chr5_2 mRNA 19411006 19415720 19411006 ID=Msa0761830-mRNA-1;Parent=Msa0761830;Name=Msa0761830-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.14|0|1|1|1|8|0|515
chr5_2 exon 19415552 19415720 19415552 ID=Msa0761830-mRNA-1:exon:8325;Parent=Msa0761830-mRNA-1
chr5_2 exon 19414796 19415327 19414796 ID=Msa0761830-mRNA-1:exon:8324;Parent=Msa0761830-mRNA-1
chr5_2 exon 19414193 19414275 19414193 ID=Msa0761830-mRNA-1:exon:8323;Parent=Msa0761830-mRNA-1
chr5_2 exon 19412659 19412747 19412659 ID=Msa0761830-mRNA-1:exon:8322;Parent=Msa0761830-mRNA-1
chr5_2 exon 19412054 19412127 19412054 ID=Msa0761830-mRNA-1:exon:8321;Parent=Msa0761830-mRNA-1
chr5_2 exon 19411922 19411972 19411922 ID=Msa0761830-mRNA-1:exon:8320;Parent=Msa0761830-mRNA-1
chr5_2 exon 19411760 19411836 19411760 ID=Msa0761830-mRNA-1:exon:8319;Parent=Msa0761830-mRNA-1
chr5_2 exon 19411006 19411478 19411006 ID=Msa0761830-mRNA-1:exon:8318;Parent=Msa0761830-mRNA-1
chr5_2 CDS 19415552 19415720 19415552 ID=Msa0761830-mRNA-1:cds;Parent=Msa0761830-mRNA-1
chr5_2 CDS 19414796 19415327 19414796 ID=Msa0761830-mRNA-1:cds;Parent=Msa0761830-mRNA-1
chr5_2 CDS 19414193 19414275 19414193 ID=Msa0761830-mRNA-1:cds;Parent=Msa0761830-mRNA-1
chr5_2 CDS 19412659 19412747 19412659 ID=Msa0761830-mRNA-1:cds;Parent=Msa0761830-mRNA-1
chr5_2 CDS 19412054 19412127 19412054 ID=Msa0761830-mRNA-1:cds;Parent=Msa0761830-mRNA-1
chr5_2 CDS 19411922 19411972 19411922 ID=Msa0761830-mRNA-1:cds;Parent=Msa0761830-mRNA-1
chr5_2 CDS 19411760 19411836 19411760 ID=Msa0761830-mRNA-1:cds;Parent=Msa0761830-mRNA-1
chr5_2 CDS 19411006 19411478 19411006 ID=Msa0761830-mRNA-1:cds;Parent=Msa0761830-mRNA-1
Gene Sequence

>Msa0761830

ATGGCTCGTGCTACTACTACAAATTCAAATAATAACTGGCTATCATTTTCACTTTCACCCATGGAAATGCCTCAGTTTGTTCAATATGACCAAGCTTCTTCCGTTACTACTAACTCCTCTCATCAAAATCATCATCACTATTTCCTTGACAACTTGTATACTCATAATGGGTGGGGAAACGGAACCAAAGCAGAAGAACAAGAACAATCAATCTGGTTTGTGGATTCATCAAACACTGTTAACCACACTCCACCACCAAAGCTAGAAGATTTTCTAGGTGACAGTCAAACAGAAACACAAGATTCATCATCACTCACCAACATGTATGATCATCATCACTACTTTGGTGGGGACCACTCCCAACACCAGCACCAACACCACCACCAGGATCTTACTGGTTTTCAAGCTTTTTCAAACAACAACTCTGGCTCTGAAGTTGATGATTCTGGTTCAATAGGGAAATCAGGACAAGCTGCATGTGGTAATGAGTTTGGAACAACTCACTGTGTTGAGTCTGTGAATGAGTTTGCTTACTCCACCGCTGCCGCAGCAGCGGTGGGGGCTAATGGAACTCTGTCGCTCGGTGTAGCGCAGAGTTCCGAGGAAAATGCTATTGTTGCCGTTGCTGCTGATTCTGATAGCTCTAAGAAGATTGTTGATACTTTTGGTCAGAGAACTTCAATTTACCGTGGTGTCACTAGGCATAGATGGACAGGAAGATATGAAGCCCATCTATGGGATAACAGCTGTAGAAGGGAAGGTCAAGCTAGGAAGGGTCGTCAAGGTGGATATGACAAAGAAGAAAAGGCCGCAAGATCCTATGATTTGGCTGCTCTAAAGTATTGGGGGCCCACTGCTACTACCAACTTCCCTGTCTCCAGTTATGCAAAAGAATTGGAAGAGATGAAGAATGTAACAAAGCAAGAATTCATTGCTTCATTGAGAAGGAAGAGTAGTGGCTTCTCAAGAGGAGCTTCCATCTACCGGGGTGTCACAAGGCATCACCAACAGGGTAGGTGGCAAGCGAGAATTGGCCGTGTTGCCGGGAACAAAGACTTGTATCTCGGAACATTCGCAACTGAAGAGGAAGCTGCAGAGGCCTACGACATTGCGGCCATAAAGTTCCGAGGCGCAAATGCAGTGACAAACTTTGAGATGAACAGATATGACGTGGAAGCGATAATGAAGAGCTCTCTTCCAGTTGGCGGAGCAGCCAAACGCCTAAAGCGTTCTCTAGAATCAGAACAGAAAGCTTCTGCTGACAACAACATTCAACAGAACAACCCTCAACAAAGTGCTGCAAACTTGACCAACAGCAGCAGCAGCAACAACATCAACTTCTCTGCCATTCAACATCAGCAACCAATGGCTTCAATCCCCTATGGTATTCCGTATGACTCGAATACGGCTTACTATCATCACAACCTCTTCCAGCATTTTCATGCTAGTACCAATGATGGCGCTGCAGAATCAGCAGCGAATGGAGGACTCAATGCCATGCCACCAACATCGGCTGAGTTCTATTTATGGCCAAATCAGTCCTATTGA
Protein sequence

>Msa0761830

MARATTTNSNNNWLSFSLSPMEMPQFVQYDQASSVTTNSSHQNHHHYFLDNLYTHNGWGNGTKAEEQEQSIWFVDSSNTVNHTPPPKLEDFLGDSQTETQDSSSLTNMYDHHHYFGGDHSQHQHQHHHQDLTGFQAFSNNNSGSEVDDSGSIGKSGQAACGNEFGTTHCVESVNEFAYSTAAAAAVGANGTLSLGVAQSSEENAIVAVAADSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARSYDLAALKYWGPTATTNFPVSSYAKELEEMKNVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKRSLESEQKASADNNIQQNNPQQSAANLTNSSSSNNINFSAIQHQQPMASIPYGIPYDSNTAYYHHNLFQHFHASTNDGAAESAANGGLNAMPPTSAEFYLWPNQSY*