AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795880 MtrunA17_Chr5g0398901 97.938 582 11 1 1 582 1 581 0.0 1177
Msa0795880 MtrunA17_Chr5g0398951 81.319 91 16 1 242 332 4 93 4.94e-42 146
Msa0795880 MtrunA17_Chr3g0097231 31.651 218 119 6 2 199 11 218 1.07e-19 92.4
Msa0795880 MtrunA17_Chr3g0097231 32.759 116 78 0 393 508 11 126 4.11e-13 72.0
Msa0795880 MtrunA17_Chr1g0166441 36.441 118 75 0 397 514 15 132 3.99e-19 89.0
Msa0795880 MtrunA17_Chr1g0166441 35.354 99 64 0 6 104 15 113 1.12e-13 72.4
Msa0795880 MtrunA17_Chr7g0274241 39.655 116 70 0 2 117 335 450 6.72e-17 83.6
Msa0795880 MtrunA17_Chr7g0274241 34.211 114 75 0 393 506 335 448 1.24e-16 82.8
Msa0795880 MtrunA17_Chr1g0160051 36.937 111 69 1 1 110 180 290 1.77e-16 82.4
Msa0795880 MtrunA17_Chr1g0160051 31.092 119 81 1 385 502 173 291 2.58e-12 69.3
Msa0795880 MtrunA17_Chr5g0397161 35.294 119 77 0 1 119 1 119 2.22e-16 81.3
Msa0795880 MtrunA17_Chr5g0397161 28.205 117 84 0 392 508 1 117 2.59e-11 65.5
Msa0795880 MtrunA17_Chr6g0470241 39.583 96 58 0 1 96 1 96 8.04e-14 73.2
Msa0795880 MtrunA17_Chr6g0470241 26.144 153 110 2 392 543 1 151 3.93e-11 65.1
Msa0795880 MtrunA17_Chr2g0316221 30.476 105 73 0 397 501 466 570 4.86e-13 72.0
Msa0795880 MtrunA17_Chr7g0237741 32.110 109 67 1 2 103 95 203 1.72e-12 68.2
Msa0795880 MtrunA17_Chr7g0237741 27.536 138 85 2 372 502 82 211 5.06e-11 63.5
Msa0795880 MtrunA17_Chr4g0050371 37.374 99 62 0 397 495 492 590 2.57e-12 69.7
Msa0795880 MtrunA17_Chr8g0393041 29.630 135 89 1 367 495 447 581 1.07e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795880 AT1G62740.1 73.639 588 132 4 1 582 1 571 0.0 882
Msa0795880 AT4G12400.2 72.213 583 136 4 1 582 1 558 0.0 882
Msa0795880 AT1G12270.1 73.424 587 136 6 1 582 1 572 0.0 848
Msa0795880 AT4G12400.1 71.481 547 130 4 1 546 1 522 0.0 819
Msa0795880 AT4G12400.1 32.258 186 125 1 392 576 1 186 5.26e-22 100
Msa0795880 AT1G04190.1 40.816 98 58 0 6 103 19 116 7.95e-18 85.5
Msa0795880 AT1G04190.1 39.623 106 64 0 397 502 19 124 1.35e-17 84.7
Msa0795880 AT4G08320.1 31.361 169 112 3 1 168 174 339 4.74e-17 84.3
Msa0795880 AT4G08320.1 33.094 139 86 3 372 508 158 291 8.14e-14 74.3
Msa0795880 AT4G08320.2 37.069 116 72 1 1 115 174 289 9.89e-17 83.2
Msa0795880 AT4G08320.2 33.094 139 86 3 372 508 158 291 7.35e-14 74.3
Msa0795880 AT3G04710.3 40.000 110 66 0 8 117 558 667 6.30e-16 81.6
Msa0795880 AT3G04710.3 30.841 107 74 0 399 505 558 664 2.52e-13 73.6
Msa0795880 AT3G04710.1 40.000 110 66 0 8 117 334 443 7.11e-16 80.9
Msa0795880 AT3G04710.1 30.841 107 74 0 399 505 334 440 1.52e-13 73.6
Msa0795880 AT3G04710.2 40.000 110 66 0 8 117 333 442 7.27e-16 80.9
Msa0795880 AT3G04710.2 30.841 107 74 0 399 505 333 439 1.47e-13 73.6
Msa0795880 AT2G42810.1 26.636 214 135 4 2 199 13 220 2.25e-15 79.3
Msa0795880 AT2G42810.1 31.429 140 96 0 389 528 9 148 7.00e-15 77.8
Msa0795880 AT2G42810.5 26.636 214 135 4 2 199 13 220 2.25e-15 79.3
Msa0795880 AT2G42810.5 31.429 140 96 0 389 528 9 148 7.00e-15 77.8
Msa0795880 AT2G42810.4 26.636 214 135 4 2 199 13 220 2.25e-15 79.3
Msa0795880 AT2G42810.4 31.429 140 96 0 389 528 9 148 7.00e-15 77.8
Msa0795880 AT4G11260.1 36.449 107 68 0 1 107 1 107 6.02e-15 77.0
Msa0795880 AT2G42810.3 31.429 140 96 0 389 528 9 148 7.22e-15 78.2
Msa0795880 AT2G42810.3 33.621 116 77 0 2 117 13 128 1.01e-14 77.4
Msa0795880 AT2G42810.2 31.429 140 96 0 389 528 9 148 7.37e-15 78.2
Msa0795880 AT2G42810.2 33.621 116 77 0 2 117 13 128 1.09e-14 77.4
Msa0795880 AT4G22670.1 36.893 103 65 0 2 104 123 225 8.80e-13 71.2
Msa0795880 AT3G17970.1 35.922 103 66 0 393 495 474 576 3.24e-12 69.7
Msa0795880 AT1G53300.1 28.829 111 79 0 391 501 463 573 6.81e-12 68.9
Msa0795880 AT1G78120.2 29.600 125 87 1 400 523 166 290 6.65e-11 65.5
Msa0795880 AT1G78120.1 29.600 125 87 1 400 523 166 290 7.29e-11 65.5
Msa0795880 AT4G23570.1 27.473 182 118 5 25 202 25 196 7.45e-11 64.3
Msa0795880 AT4G23570.2 27.473 182 118 5 25 202 25 196 7.45e-11 64.3
Msa0795880 AT3G58620.2 26.923 156 97 3 349 502 418 558 7.88e-11 65.5

Find 222 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCTCATCAGCCAAATT+TGG 0.136072 5_3:+7892073 None:intergenic
CAAATACAAATTCAAATTAT+TGG 0.139538 5_3:+7894570 None:intergenic
TTCTACTAGGGTCTGGGGTT+GGG 0.160704 5_3:+7895275 None:intergenic
GATTTCAAGGGTTCATTATT+AGG 0.169330 5_3:+7894784 None:intergenic
CAGCTTCATTGAGTTTCTTC+AGG 0.191835 5_3:+7892137 None:intergenic
AGAATACTTCGATCCAAATT+TGG 0.199740 5_3:-7892086 Msa0795880:CDS
GAGAGAGTGGGTTAGGTTAT+AGG 0.204685 5_3:+7895228 None:intergenic
TTTACTTTGTTGATGTTGAT+TGG 0.217020 5_3:+7895175 None:intergenic
TTGAGTTTCTTCAGGGTGTC+TGG 0.227086 5_3:+7892145 None:intergenic
TTGTTGTTCTAGTTCTTTCT+TGG 0.227451 5_3:+7892108 None:intergenic
AGGTTCATTGCTTAGAAATT+AGG 0.238421 5_3:-7890666 Msa0795880:three_prime_UTR
AGTTGAAATCGAAAGGGTTT+TGG 0.241292 5_3:+7895118 None:intergenic
TTGAATTTGACAATATTATA+TGG 0.247524 5_3:+7890303 None:intergenic
CAGAGAGTTATGCAAGCTTT+TGG 0.262229 5_3:-7894541 Msa0795880:CDS
TCCATCAAATTTACTTCATC+TGG 0.263023 5_3:+7891013 None:intergenic
TTCCGGCACTGATCAGCTTT+TGG 0.271295 5_3:+7891040 None:intergenic
AAATACAAATTCAAATTATT+GGG 0.271371 5_3:+7894571 None:intergenic
GTCCATCACACCCGGGTTCT+TGG 0.290667 5_3:+7891068 None:intergenic
TTACTTTGTTGATGTTGATT+GGG 0.290830 5_3:+7895176 None:intergenic
CATCATGTTTCAACCCTTCC+TGG 0.293057 5_3:+7891570 None:intergenic
GCAGGTATTGGTTGATTTCC+AGG 0.298727 5_3:-7891118 Msa0795880:intron
AGCTGCATGTTACACAAAAC+TGG 0.310459 5_3:-7891723 Msa0795880:CDS
TCTACTAGGGTCTGGGGTTG+GGG 0.311038 5_3:+7895276 None:intergenic
TCCTCCATTGGCTCCGGTTC+CGG 0.312001 5_3:+7894391 None:intergenic
TCCGAACTGGACGGCATATC+AGG 0.312824 5_3:+7894469 None:intergenic
AAGCAAACCTGTCTCATAAC+AGG 0.314328 5_3:+7891216 None:intergenic
TTCCTATTGTGACTTTGATT+TGG 0.317739 5_3:-7890954 Msa0795880:three_prime_UTR
GGCAATGCCTGAAGGTTTAA+AGG 0.321704 5_3:-7891699 Msa0795880:CDS
TCCAGATGAAGTAAATTTGA+TGG 0.333610 5_3:-7891014 Msa0795880:exon
GCTGATGAGGAGAGAGAAAA+AGG 0.335378 5_3:-7892064 Msa0795880:intron
GTATGTCTTGTGTTTGTTGT+AGG 0.335866 5_3:-7890443 Msa0795880:three_prime_UTR
GTTTGTTGTAGGCAGTATTT+TGG 0.336116 5_3:-7890432 Msa0795880:three_prime_UTR
TTAAAGCGTCAGTGTAATTC+TGG 0.337616 5_3:+7894938 None:intergenic
AAAACTGAACCGCACCCTTC+CGG 0.339040 5_3:+7891627 None:intergenic
GTATGTTCCTGTGCAGCCTT+TGG 0.339809 5_3:+7891090 None:intergenic
TCTGCATCCTTTAAACCTTC+AGG 0.340625 5_3:+7891692 None:intergenic
TGTCTCTCCTTCAACTCTTC+AGG 0.344507 5_3:+7891372 None:intergenic
TGGTTATTCAATCTAAATCT+AGG 0.345616 5_3:-7890790 Msa0795880:three_prime_UTR
AATAATGAACCCTTGAAATC+AGG 0.348019 5_3:-7894781 Msa0795880:CDS
TGCATCATCTTCACAAAATC+AGG 0.348278 5_3:+7894610 None:intergenic
GTTCTACTAGGGTCTGGGGT+TGG 0.352820 5_3:+7895274 None:intergenic
TTTGTTGAATAAACGAAAAC+GGG 0.358914 5_3:-7890621 Msa0795880:three_prime_UTR
AAACTGAACCGCACCCTTCC+GGG 0.362337 5_3:+7891628 None:intergenic
GAACCCCTTCAAGCAATTCC+TGG 0.364967 5_3:+7891540 None:intergenic
TGCGTTTACAATGCAGTAAC+AGG 0.368288 5_3:-7890736 Msa0795880:three_prime_UTR
TTATTCGAAAGCTTTGGAAT+TGG 0.368370 5_3:-7894257 Msa0795880:CDS
GGATAGAGAGAGAGTGGGTT+AGG 0.369650 5_3:+7895221 None:intergenic
TTACTTCATCTGGACAATTC+CGG 0.371932 5_3:+7891023 None:intergenic
TAATTTGAATTTGTATTTGA+AGG 0.375764 5_3:-7894566 Msa0795880:CDS
TAACCGTGCTGCTGTATACT+TGG 0.383148 5_3:-7894209 Msa0795880:CDS
CTGTAACCCTTTGACCAATC+AGG 0.384513 5_3:+7894886 None:intergenic
CGTCTCGGTGCCGCTCATCT+TGG 0.384527 5_3:-7894862 Msa0795880:CDS
ATTGGCTCCGGTTCCGGCTC+AGG 0.388295 5_3:+7894397 None:intergenic
GGAGAATGCAGCGTTGCCTT+TGG 0.390754 5_3:+7895065 None:intergenic
AAGAGAGGATAGAGAGAGAG+TGG 0.392842 5_3:+7895215 None:intergenic
TCTGCATTATTCGAAAGCTT+TGG 0.393752 5_3:-7894263 Msa0795880:CDS
TCCGCCTGCTTTGCCACCTC+AGG 0.396836 5_3:+7894427 None:intergenic
GTCTCATAACAGGGTCTTGA+AGG 0.401205 5_3:+7891226 None:intergenic
TTCTAGGCCACGTTCTGCGC+CGG 0.406464 5_3:-7894722 Msa0795880:CDS
TGAAGGATGTTCTGAATCTC+TGG 0.407523 5_3:+7891243 None:intergenic
TCTTCAGGGTGTCTGGGTTA+CGG 0.408287 5_3:+7892152 None:intergenic
TAGAGAGTTCTACTAGGGTC+TGG 0.408614 5_3:+7895268 None:intergenic
ATTTAGAGCAACGACCTTGA+TGG 0.412320 5_3:+7890505 None:intergenic
CAGCGGATCGGTTGGAATAC+AGG 0.412654 5_3:+7894974 None:intergenic
TGAAGATAAACCCTAGTTGT+AGG 0.413840 5_3:+7894637 None:intergenic
GTGTAATGCTTAATAGCTTC+AGG 0.414719 5_3:+7891877 None:intergenic
GCGCCGGGTGCCAATCCGTT+TGG 0.416911 5_3:-7894706 Msa0795880:CDS
TGGATTGGAAGTACAATAGT+TGG 0.420764 5_3:-7890918 Msa0795880:three_prime_UTR
TCTAGGCCACGTTCTGCGCC+GGG 0.422100 5_3:-7894721 Msa0795880:CDS
GATTTGGTATTGGAATAGAT+TGG 0.424663 5_3:-7890938 Msa0795880:three_prime_UTR
GAAAGAATATGAAAAGGCTT+TGG 0.427879 5_3:-7891600 Msa0795880:CDS
ATCGGCTAAACCTGATTTCA+AGG 0.428004 5_3:+7894771 None:intergenic
AGCTTCATTGAGTTTCTTCA+GGG 0.428316 5_3:+7892138 None:intergenic
TTGTGACTTTGATTTGGTAT+TGG 0.428426 5_3:-7890948 Msa0795880:three_prime_UTR
GCTGTTTCAGCTTACAAGAA+AGG 0.435873 5_3:-7894820 Msa0795880:CDS
TGCTGCTGTATACTTGGAAA+TGG 0.437857 5_3:-7894203 Msa0795880:CDS
TACTTTGTTGATGTTGATTG+GGG 0.441458 5_3:+7895177 None:intergenic
TGAACCTGAGGTGGCAAAGC+AGG 0.443025 5_3:-7894431 Msa0795880:CDS
CTCAAACCTGATTGGTCAAA+GGG 0.450036 5_3:-7894892 Msa0795880:CDS
TGAAGAGTTGAAGGAGAGAC+AGG 0.450058 5_3:-7891370 Msa0795880:intron
TGAGTTTCTTCAGGGTGTCT+GGG 0.451649 5_3:+7892146 None:intergenic
GTTTGTTGAATAAACGAAAA+CGG 0.451756 5_3:-7890622 Msa0795880:three_prime_UTR
GGTTGAGCCTGAGCCGGAAC+CGG 0.452769 5_3:-7894404 Msa0795880:CDS
CTGTTTCAGCTTACAAGAAA+GGG 0.455044 5_3:-7894819 Msa0795880:CDS
GCACCTCTCTTTGCAAGAAA+AGG 0.455427 5_3:-7890686 Msa0795880:three_prime_UTR
GGAGGTGGCTGATGAGGAGA+AGG 0.455482 5_3:-7894371 Msa0795880:CDS
TCATCAGCCACCTCCTCCAT+TGG 0.457433 5_3:+7894379 None:intergenic
TACCAAATCAAAGTCACAAT+AGG 0.459976 5_3:+7890952 None:intergenic
TGGATCTTGTCCATCACACC+CGG 0.459995 5_3:+7891060 None:intergenic
GAGGAAGGCTGAGGCGCAGA+AGG 0.460304 5_3:-7894338 Msa0795880:CDS
GGCTTTAGCTTCGTCGGCCA+TGG 0.464637 5_3:+7895086 None:intergenic
TCAAGACCCTGTTATGAGAC+AGG 0.467657 5_3:-7891223 Msa0795880:intron
CTTAATGTTAAGATTGGAAG+AGG 0.468931 5_3:-7894511 Msa0795880:CDS
AGCTCTCTTCCTCTCCGAAC+TGG 0.469541 5_3:+7894456 None:intergenic
GCCTGATATGCCGTCCAGTT+CGG 0.472399 5_3:-7894470 Msa0795880:CDS
GTCGTGTGCATGCTTTCAAT+TGG 0.473573 5_3:-7890810 Msa0795880:three_prime_UTR
AGGAACTGCCATGGGTAAAA+CGG 0.477231 5_3:-7892236 Msa0795880:CDS
CGATCCAAATTTGGCTGATG+AGG 0.478253 5_3:-7892077 Msa0795880:CDS
GGATTGGAAGTACAATAGTT+GGG 0.482953 5_3:-7890917 Msa0795880:three_prime_UTR
TGTAACTCCTGAAGAGTTGA+AGG 0.487207 5_3:-7891379 Msa0795880:CDS
TTTAGAGCAACGACCTTGAT+GGG 0.487649 5_3:+7890506 None:intergenic
AGAGAGTTCTACTAGGGTCT+GGG 0.488562 5_3:+7895269 None:intergenic
TTTCATGAAAGAATATGAAA+AGG 0.488950 5_3:-7891606 Msa0795880:CDS
GAAGTAAATTTGATGGAAGA+TGG 0.489595 5_3:-7891007 Msa0795880:exon
TTGAACAATTCAGTCAGAAA+AGG 0.492536 5_3:-7890348 Msa0795880:three_prime_UTR
TACTGCTGATCCTACAACTA+GGG 0.494571 5_3:-7894647 Msa0795880:CDS
GGAAAATCCAAAGGCTGCAC+AGG 0.497888 5_3:-7891097 Msa0795880:CDS
GCGCAGAAGGAGAAGGAGGC+TGG 0.498289 5_3:-7894325 Msa0795880:CDS
GGTATTGGAATAGATTGGAT+TGG 0.499629 5_3:-7890933 Msa0795880:three_prime_UTR
GTTAACTAGAGAGTTCTACT+AGG 0.502412 5_3:+7895262 None:intergenic
ACCCTTCCGGGTATAACCCT+TGG 0.502655 5_3:+7891640 None:intergenic
GCCACCTCCTCCATTGGCTC+CGG 0.504102 5_3:+7894385 None:intergenic
TGAGCCGGAACCGGAGCCAA+TGG 0.504535 5_3:-7894395 Msa0795880:CDS
ATCCAAAAGCTGATCAGTGC+CGG 0.507708 5_3:-7891042 Msa0795880:CDS
TATAACCCTTGGTGAAGGTC+GGG 0.507749 5_3:+7891651 None:intergenic
ACCGGAGCCAATGGAGGAGG+TGG 0.508880 5_3:-7894386 Msa0795880:CDS
AACAACCAGGAATTGCTTGA+AGG 0.509120 5_3:-7891545 Msa0795880:CDS
GCCTTTGGCTTTAGCTTCGT+CGG 0.510652 5_3:+7895080 None:intergenic
GTAAGTTTCGCCCACATCTC+CGG 0.511152 5_3:+7894667 None:intergenic
GGCGGAGGTTGAGCCTGAGC+CGG 0.511864 5_3:-7894410 Msa0795880:CDS
AGGAGAAGGAAGTGAAGCAG+AGG 0.515007 5_3:-7894357 Msa0795880:CDS
GATGATGCAAGATATTCAAA+AGG 0.517290 5_3:-7894596 Msa0795880:CDS
AGGAGTTACATCCCCACGAC+TGG 0.518165 5_3:+7891392 None:intergenic
TACCAAGAACCCGGGTGTGA+TGG 0.520879 5_3:-7891070 Msa0795880:CDS
AGCGTGAGCAGCGGATCGGT+TGG 0.522057 5_3:+7894966 None:intergenic
GTTGGAATACAGGACGTGAT+TGG 0.525153 5_3:+7894984 None:intergenic
AGAGAGGATAGAGAGAGAGT+GGG 0.526148 5_3:+7895216 None:intergenic
GAATACAGGACGTGATTGGT+GGG 0.529765 5_3:+7894988 None:intergenic
GTATAACCCTTGGTGAAGGT+CGG 0.529921 5_3:+7891650 None:intergenic
TTGCATAAAAGATTGTGATA+AGG 0.530466 5_3:-7892323 Msa0795880:CDS
ATACAGGACGTGATTGGTGG+GGG 0.535184 5_3:+7894990 None:intergenic
GCAAGAGCTTTGACAAGGAA+AGG 0.536678 5_3:-7892256 Msa0795880:CDS
AATGGAGGAGGTGGCTGATG+AGG 0.538534 5_3:-7894377 Msa0795880:CDS
AGCAGCACGGTTAGTGAGGA+AGG 0.539890 5_3:+7894219 None:intergenic
TGAGGTGGCAAAGCAGGCGG+AGG 0.540052 5_3:-7894425 Msa0795880:CDS
CCGTCGAACTCAAACCTGAT+TGG 0.540548 5_3:-7894900 Msa0795880:CDS
AAAAGCATCACCAAACGGAT+TGG 0.541023 5_3:+7894696 None:intergenic
GATCGGAGTTGAAATCGAAA+GGG 0.541255 5_3:+7895112 None:intergenic
GGGTTATACCCGGAAGGGTG+CGG 0.542682 5_3:-7891636 Msa0795880:CDS
CCAATCAGGTTTGAGTTCGA+CGG 0.546460 5_3:+7894900 None:intergenic
GGCTGAGGCGCAGAAGGAGA+AGG 0.547847 5_3:-7894332 Msa0795880:CDS
ACAACCAGGAATTGCTTGAA+GGG 0.548142 5_3:-7891544 Msa0795880:CDS
GAAACTCAATGAAGCTGAGA+AGG 0.551120 5_3:-7892131 Msa0795880:CDS
GCTGCTGTATACTTGGAAAT+GGG 0.551340 5_3:-7894202 Msa0795880:CDS
GGCAACGCTGCATTCTCCTC+CGG 0.551432 5_3:-7895060 Msa0795880:CDS
GGAACCGGAGCCAATGGAGG+AGG 0.554085 5_3:-7894389 Msa0795880:CDS
GGAATACAGGACGTGATTGG+TGG 0.554167 5_3:+7894987 None:intergenic
AGCTTTGGAATTGGATGATG+AGG 0.555608 5_3:-7894248 Msa0795880:CDS
GAAGAGAGCTGCTGAACCTG+AGG 0.556646 5_3:-7894443 Msa0795880:CDS
TCCTCATTGAACAATTGAGT+CGG 0.556777 5_3:-7890398 Msa0795880:three_prime_UTR
AGATCGGAGTTGAAATCGAA+AGG 0.559867 5_3:+7895111 None:intergenic
ATAAACGAAAACGGGGAAAG+TGG 0.560542 5_3:-7890613 Msa0795880:three_prime_UTR
AAATTAATAGAACCAGTCGT+GGG 0.560810 5_3:-7891404 Msa0795880:CDS
ACTCAAACCTGATTGGTCAA+AGG 0.563775 5_3:-7894893 Msa0795880:CDS
TCAAAGGGTTACAGCCGTCT+CGG 0.565098 5_3:-7894877 Msa0795880:CDS
ATAAGTTATCATGAGTGAGA+AGG 0.565958 5_3:-7890484 Msa0795880:three_prime_UTR
TGGAAGAGGTGGTGATGATG+TGG 0.569802 5_3:-7894497 Msa0795880:CDS
TGTGATAAGGCTGTTGAAAG+AGG 0.569985 5_3:-7892310 Msa0795880:CDS
TAATGCTGCGTATAAGAAGA+AGG 0.570012 5_3:-7894302 Msa0795880:CDS
TCACCAAACGGATTGGCACC+CGG 0.570986 5_3:+7894703 None:intergenic
CAAGATGAGCGGCACCGAGA+CGG 0.571843 5_3:+7894863 None:intergenic
TGTATACTTGGAAATGGGAA+AGG 0.572009 5_3:-7894197 Msa0795880:intron
TTGGCACCCGGCGCAGAACG+TGG 0.574389 5_3:+7894715 None:intergenic
CACCAAGGGTTATACCCGGA+AGG 0.575257 5_3:-7891642 Msa0795880:CDS
CTTTGGAAACATACCAGGAA+GGG 0.575984 5_3:-7891583 Msa0795880:CDS
AATTGCTTGAAGGGGTTCGA+AGG 0.576444 5_3:-7891535 Msa0795880:intron
GAGAGTGAAGAATTGAAGAG+AGG 0.579448 5_3:+7895200 None:intergenic
TTAACTAGAGAGTTCTACTA+GGG 0.580605 5_3:+7895263 None:intergenic
GCTGCATGTTACACAAAACT+GGG 0.580641 5_3:-7891722 Msa0795880:CDS
ACCTGAGGTGGCAAAGCAGG+CGG 0.581309 5_3:-7894428 Msa0795880:CDS
CCGGGTATAACCCTTGGTGA+AGG 0.581722 5_3:+7891646 None:intergenic
GAAGGAAGTGAAGCAGAGGA+AGG 0.582452 5_3:-7894353 Msa0795880:CDS
AGTGAAGCAGAGGAAGGCTG+AGG 0.583668 5_3:-7894347 Msa0795880:CDS
TTCGTCGGCCATGGATAGAT+CGG 0.583671 5_3:+7895095 None:intergenic
TGAGGCGCAGAAGGAGAAGG+AGG 0.586945 5_3:-7894329 Msa0795880:CDS
ATACAGCAGCACGGTTAGTG+AGG 0.589306 5_3:+7894215 None:intergenic
GAGAGCTGCTGAACCTGAGG+TGG 0.589705 5_3:-7894440 Msa0795880:CDS
CAAATTAATAGAACCAGTCG+TGG 0.592861 5_3:-7891405 Msa0795880:CDS
AATACAGGACGTGATTGGTG+GGG 0.593162 5_3:+7894989 None:intergenic
ACAAGGAAAGGAACTGCCAT+GGG 0.594542 5_3:-7892244 Msa0795880:CDS
GACAAGGAAAGGAACTGCCA+TGG 0.596247 5_3:-7892245 Msa0795880:CDS
GCCGGAACCGGAGCCAATGG+AGG 0.596557 5_3:-7894392 Msa0795880:CDS
ATGTCGAGCTGCTTGCTATG+AGG 0.597876 5_3:-7890581 Msa0795880:three_prime_UTR
TTACTGCTGATCCTACAACT+AGG 0.598575 5_3:-7894648 Msa0795880:CDS
AAAGGCTTTGGAAACATACC+AGG 0.604647 5_3:-7891588 Msa0795880:CDS
ACCAAGGGTTATACCCGGAA+GGG 0.604794 5_3:-7891641 Msa0795880:CDS
AATGTTAAGATTGGAAGAGG+TGG 0.604956 5_3:-7894508 Msa0795880:CDS
TCGGCTAAACCTGATTTCAA+GGG 0.605511 5_3:+7894772 None:intergenic
GAGAAGCGTGAGCAGCGGAT+CGG 0.606528 5_3:+7894962 None:intergenic
GATGGCGGTTGCGAAATCGC+CGG 0.612453 5_3:+7895041 None:intergenic
TTTCAACTCCGATCTATCCA+TGG 0.612599 5_3:-7895103 Msa0795880:exon
CAACCAGGAATTGCTTGAAG+GGG 0.617312 5_3:-7891543 Msa0795880:CDS
TGATTTCCAGGAAAATCCAA+AGG 0.618569 5_3:-7891106 Msa0795880:CDS
GCTTTGGAAACATACCAGGA+AGG 0.619719 5_3:-7891584 Msa0795880:CDS
ACAGGAACATACCAAGAACC+CGG 0.627654 5_3:-7891079 Msa0795880:CDS
CTTGACCCGACCTTCACCAA+GGG 0.628031 5_3:-7891656 Msa0795880:CDS
CAGGCAATACGAGTCTCTGT+AGG 0.628713 5_3:-7890717 Msa0795880:three_prime_UTR
GCCGACGAAGCTAAAGCCAA+AGG 0.634082 5_3:-7895081 Msa0795880:CDS
CTCTTCCTCTCCGAACTGGA+CGG 0.634577 5_3:+7894460 None:intergenic
GGCGGTTGCGAAATCGCCGG+AGG 0.634986 5_3:+7895044 None:intergenic
CCTTCACCAAGGGTTATACC+CGG 0.641665 5_3:-7891646 Msa0795880:CDS
ACCGACTCAATTGTTCAATG+AGG 0.643351 5_3:+7890397 None:intergenic
ACTTTGTTGATGTTGATTGG+GGG 0.644256 5_3:+7895178 None:intergenic
TGATGGCATCTGAGAAGTGA+CGG 0.645347 5_3:+7895019 None:intergenic
GAGAGTTCTACTAGGGTCTG+GGG 0.653088 5_3:+7895270 None:intergenic
GGATCTTGTCCATCACACCC+GGG 0.653989 5_3:+7891061 None:intergenic
AGCAAACCTGTCTCATAACA+GGG 0.656878 5_3:+7891217 None:intergenic
GAAACATGATGCAAACAACC+AGG 0.657221 5_3:-7891558 Msa0795880:CDS
GCTTGACCCGACCTTCACCA+AGG 0.659770 5_3:-7891657 Msa0795880:CDS
AATTAATAGAACCAGTCGTG+GGG 0.662286 5_3:-7891403 Msa0795880:CDS
ATCTGAGAAGTGACGGATGG+CGG 0.664337 5_3:+7895026 None:intergenic
CTGGAGAGAAGCGTGAGCAG+CGG 0.667719 5_3:+7894957 None:intergenic
GGCATCTGAGAAGTGACGGA+TGG 0.670607 5_3:+7895023 None:intergenic
TGATAGCAAGAGCTTTGACA+AGG 0.676277 5_3:-7892261 Msa0795880:CDS
CAGGAACATACCAAGAACCC+GGG 0.680404 5_3:-7891078 Msa0795880:CDS
TAGGTGCAAGTGTAATGTTG+TGG 0.681227 5_3:-7890647 Msa0795880:three_prime_UTR
TTTCCAAGTATACAGCAGCA+CGG 0.692729 5_3:+7894206 None:intergenic
CTGCATGTTACACAAAACTG+GGG 0.696032 5_3:-7891721 Msa0795880:CDS
TTGAGAAAGACCAAGATGAG+CGG 0.707072 5_3:+7894852 None:intergenic
TTGTTGAATAAACGAAAACG+GGG 0.715300 5_3:-7890620 Msa0795880:three_prime_UTR
TGCATGTTACACAAAACTGG+GGG 0.723034 5_3:-7891720 Msa0795880:CDS
ATATGCCGTCCAGTTCGGAG+AGG 0.733223 5_3:-7894465 Msa0795880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACAAATTCAAATTATT+GGG + chr5_3:7890982-7891001 None:intergenic 10.0%
!! TTTGTCAAAAATATATAAAT+AGG + chr5_3:7891389-7891408 None:intergenic 10.0%
!! TATTATTATGATATATGTAT+TGG - chr5_3:7892057-7892076 Msa0795880:intron 10.0%
!! CAAATACAAATTCAAATTAT+TGG + chr5_3:7890983-7891002 None:intergenic 15.0%
!! TAATTTGAATTTGTATTTGA+AGG - chr5_3:7890984-7891003 Msa0795880:three_prime_UTR 15.0%
!! TTTAATTGGAAATAGTTAAA+AGG + chr5_3:7891711-7891730 None:intergenic 15.0%
!! AAGTCTAATAAAGAAAATAA+TGG + chr5_3:7892492-7892511 None:intergenic 15.0%
!! TCATAAATATCTAATACTAT+TGG + chr5_3:7892883-7892902 None:intergenic 15.0%
!! TTGAATTTGACAATATTATA+TGG + chr5_3:7895250-7895269 None:intergenic 15.0%
!!! AACAAAGTAATGTATTTTCA+TGG + chr5_3:7891809-7891828 None:intergenic 20.0%
!!! ACATTACTTTGTTTTTTATG+TGG - chr5_3:7891816-7891835 Msa0795880:intron 20.0%
!!! CATTACTTTGTTTTTTATGT+GGG - chr5_3:7891817-7891836 Msa0795880:intron 20.0%
!!! ATTAAACATACTTTTGTTTG+TGG - chr5_3:7891947-7891966 Msa0795880:intron 20.0%
!!! TTAAACATACTTTTGTTTGT+GGG - chr5_3:7891948-7891967 Msa0795880:intron 20.0%
!! TAGATAAATTCTTCAACATT+TGG + chr5_3:7892109-7892128 None:intergenic 20.0%
!! TTGGATAAAAGAAGTAAAAA+AGG - chr5_3:7892310-7892329 Msa0795880:CDS 20.0%
!! TGGATAAAAGAAGTAAAAAA+GGG - chr5_3:7892311-7892330 Msa0795880:CDS 20.0%
!! TAAATATCTAATACTATTGG+AGG + chr5_3:7892880-7892899 None:intergenic 20.0%
!!! ATAGGATACAAATTTTACTA+TGG - chr5_3:7893074-7893093 Msa0795880:intron 20.0%
!!! GTTTTTTAATGTTAAGTCAA+GGG - chr5_3:7893167-7893186 Msa0795880:intron 20.0%
!!! ATTATTACCTTAGGATTTTT+CGG + chr5_3:7893718-7893737 None:intergenic 20.0%
!! TAATAATACTCTTTGAATTC+AGG - chr5_3:7893731-7893750 Msa0795880:intron 20.0%
!! TTTCATGAAAGAATATGAAA+AGG - chr5_3:7893944-7893963 Msa0795880:intron 20.0%
!!! CTGTATTTTGAATATTTTTC+AGG - chr5_3:7894267-7894286 Msa0795880:CDS 20.0%
!!! ATTTTGACTTGTTTTGTTTT+TGG - chr5_3:7894658-7894677 Msa0795880:CDS 20.0%
!!! ATCTTTTCTTTGATTTTGTT+TGG - chr5_3:7894785-7894804 Msa0795880:CDS 20.0%
!! ATAATAAAAAAAACCCATCA+AGG - chr5_3:7895031-7895050 Msa0795880:CDS 20.0%
!! TTACTTTGTTGATGTTGATT+GGG + chr5_3:7890377-7890396 None:intergenic 25.0%
! TTTACTTTGTTGATGTTGAT+TGG + chr5_3:7890378-7890397 None:intergenic 25.0%
!! GTTTTGCTTAATGTTAAGAT+TGG - chr5_3:7891033-7891052 Msa0795880:CDS 25.0%
! ACTTGCTTAGTTATAGTATA+TGG - chr5_3:7891539-7891558 Msa0795880:CDS 25.0%
!!! TGTAACACTTTTTCAAGTAT+GGG + chr5_3:7891612-7891631 None:intergenic 25.0%
!!! ATGTAACACTTTTTCAAGTA+TGG + chr5_3:7891613-7891632 None:intergenic 25.0%
!! TTGATAGTACATCAATTCAA+TGG + chr5_3:7891749-7891768 None:intergenic 25.0%
!!! AACTGTTTTTTTATGAAAGC+TGG - chr5_3:7891903-7891922 Msa0795880:CDS 25.0%
!! AGTCTTGTAAATGAATGTTT+GGG - chr5_3:7892009-7892028 Msa0795880:intron 25.0%
! ATAAATTCTTCAACATTTGG+AGG + chr5_3:7892106-7892125 None:intergenic 25.0%
! CCTATAAACTCCTAATTAAA+GGG + chr5_3:7892270-7892289 None:intergenic 25.0%
! TCCTATAAACTCCTAATTAA+AGG + chr5_3:7892271-7892290 None:intergenic 25.0%
!!! TTTTTCTGGGAGAATATTAA+GGG + chr5_3:7892557-7892576 None:intergenic 25.0%
! TCTTAGAAATTCTTTAATCG+TGG - chr5_3:7892719-7892738 Msa0795880:intron 25.0%
! ATATTATTGGGGTTGTTAAA+GGG + chr5_3:7892771-7892790 None:intergenic 25.0%
! AATATTATTGGGGTTGTTAA+AGG + chr5_3:7892772-7892791 None:intergenic 25.0%
! CAGTCTTGAAAATATTATTG+GGG + chr5_3:7892782-7892801 None:intergenic 25.0%
! GCAGTCTTGAAAATATTATT+GGG + chr5_3:7892783-7892802 None:intergenic 25.0%
! AGCAGTCTTGAAAATATTAT+TGG + chr5_3:7892784-7892803 None:intergenic 25.0%
!! TCAGAGTATTATGCATATAA+CGG + chr5_3:7892834-7892853 None:intergenic 25.0%
!! GAACTTGTCAAATTTTACTA+TGG - chr5_3:7893008-7893027 Msa0795880:intron 25.0%
! TATGGTTTGAGTGTTTAAAT+AGG - chr5_3:7893026-7893045 Msa0795880:intron 25.0%
! TTGAGTGTTTAAATAGGATT+AGG - chr5_3:7893032-7893051 Msa0795880:intron 25.0%
! TATGGTTTGAGTGTTTAAAT+AGG - chr5_3:7893026-7893045 Msa0795880:intron 25.0%
! TTGAGTGTTTAAATAGGATT+AGG - chr5_3:7893032-7893051 Msa0795880:intron 25.0%
! ATAGGAAGAGAAAAATCTAA+GGG - chr5_3:7893145-7893164 Msa0795880:intron 25.0%
!!! GGTTTTTTAATGTTAAGTCA+AGG - chr5_3:7893166-7893185 Msa0795880:intron 25.0%
! AGATTCAAGGAATATTGAAT+TGG + chr5_3:7893193-7893212 None:intergenic 25.0%
! TTGCATAAAAGATTGTGATA+AGG - chr5_3:7893227-7893246 Msa0795880:intron 25.0%
! AAACAATAATGTGGAAATAG+AGG + chr5_3:7893571-7893590 None:intergenic 25.0%
! ATTGAGTCAAAACAATAATG+TGG + chr5_3:7893580-7893599 None:intergenic 25.0%
!! TTATTACCTTAGGATTTTTC+GGG + chr5_3:7893717-7893736 None:intergenic 25.0%
!!! TCAAAGAGTATTATTACCTT+AGG + chr5_3:7893727-7893746 None:intergenic 25.0%
! GAAATATTAAACACATTGCA+GGG + chr5_3:7894063-7894082 None:intergenic 25.0%
!!! ATATTTCCAGTTTCCTTTTT+TGG - chr5_3:7894076-7894095 Msa0795880:intron 25.0%
!!! TTTGAATATTTTTCAGGCTA+AGG - chr5_3:7894273-7894292 Msa0795880:CDS 25.0%
! GCAATAAGATGTGTTTATAA+TGG - chr5_3:7894397-7894416 Msa0795880:CDS 25.0%
! TAAGATGTGTTTATAATGGT+TGG - chr5_3:7894401-7894420 Msa0795880:CDS 25.0%
!! GTTTGTTGAATAAACGAAAA+CGG - chr5_3:7894928-7894947 Msa0795880:CDS 25.0%
! TTTGTTGAATAAACGAAAAC+GGG - chr5_3:7894929-7894948 Msa0795880:CDS 25.0%
TTAACTAGAGAGTTCTACTA+GGG + chr5_3:7890290-7890309 None:intergenic 30.0%
! TACTTTGTTGATGTTGATTG+GGG + chr5_3:7890376-7890395 None:intergenic 30.0%
ATAGGAAGAAGAAGAAGAAA+GGG + chr5_3:7890402-7890421 None:intergenic 30.0%
GATTTCAAGGGTTCATTATT+AGG + chr5_3:7890769-7890788 None:intergenic 30.0%
AATAATGAACCCTTGAAATC+AGG - chr5_3:7890769-7890788 Msa0795880:three_prime_UTR 30.0%
GATGATGCAAGATATTCAAA+AGG - chr5_3:7890954-7890973 Msa0795880:three_prime_UTR 30.0%
CTTAATGTTAAGATTGGAAG+AGG - chr5_3:7891039-7891058 Msa0795880:CDS 30.0%
!! TTATTCGAAAGCTTTGGAAT+TGG - chr5_3:7891293-7891312 Msa0795880:intron 30.0%
! TTAGTCTAGTTTCATTGCTA+AGG - chr5_3:7891487-7891506 Msa0795880:intron 30.0%
!!! GTAACACTTTTTCAAGTATG+GGG + chr5_3:7891611-7891630 None:intergenic 30.0%
!!! GTTAAACACTTTTTCACCTA+GGG + chr5_3:7891655-7891674 None:intergenic 30.0%
!!! AGTTAAACACTTTTTCACCT+AGG + chr5_3:7891656-7891675 None:intergenic 30.0%
! ATTCTCATGGGGTTTTTAAT+TGG + chr5_3:7891725-7891744 None:intergenic 30.0%
AATTCAATGGAATTCTCATG+GGG + chr5_3:7891736-7891755 None:intergenic 30.0%
CAATTCAATGGAATTCTCAT+GGG + chr5_3:7891737-7891756 None:intergenic 30.0%
TCAATTCAATGGAATTCTCA+TGG + chr5_3:7891738-7891757 None:intergenic 30.0%
GTATATGAACCAAATTGAGA+AGG - chr5_3:7891769-7891788 Msa0795880:intron 30.0%
GTATGTTTAATCACACACTT+AGG + chr5_3:7891938-7891957 None:intergenic 30.0%
! GAGTCTTGTAAATGAATGTT+TGG - chr5_3:7892008-7892027 Msa0795880:intron 30.0%
AGGAAATGAAAATGGTAGAA+AGG + chr5_3:7892223-7892242 None:intergenic 30.0%
TAAAAGGGAGGAAATGAAAA+TGG + chr5_3:7892231-7892250 None:intergenic 30.0%
CCCTTTAATTAGGAGTTTAT+AGG - chr5_3:7892267-7892286 Msa0795880:CDS 30.0%
GACTAAAACCCTAAAATATG+CGG - chr5_3:7892398-7892417 Msa0795880:intron 30.0%
ACTAAAACCCTAAAATATGC+GGG - chr5_3:7892399-7892418 Msa0795880:intron 30.0%
! TTAAGTTCCCGCATATTTTA+GGG + chr5_3:7892409-7892428 None:intergenic 30.0%
!! TTTAAGTTCCCGCATATTTT+AGG + chr5_3:7892410-7892429 None:intergenic 30.0%
GGATCGAAATGAAAATCTTA+TGG + chr5_3:7892536-7892555 None:intergenic 30.0%
!! CTTTTTCTGGGAGAATATTA+AGG + chr5_3:7892558-7892577 None:intergenic 30.0%
TAGTATCCAAAACATAACAG+CGG - chr5_3:7892946-7892965 Msa0795880:intron 30.0%
GATAGGAAGAGAAAAATCTA+AGG - chr5_3:7893144-7893163 Msa0795880:intron 30.0%
!! TTGTTGTTCTAGTTCTTTCT+TGG + chr5_3:7893445-7893464 None:intergenic 30.0%
AGAATACTTCGATCCAAATT+TGG - chr5_3:7893464-7893483 Msa0795880:intron 30.0%
TAATACTCTTTGAATTCAGG+TGG - chr5_3:7893734-7893753 Msa0795880:intron 30.0%
ATTCAGATAGCATAACCATA+AGG + chr5_3:7893761-7893780 None:intergenic 30.0%
TACTATAAGCCTGAAAGAAA+TGG + chr5_3:7893803-7893822 None:intergenic 30.0%
GAAAGAATATGAAAAGGCTT+TGG - chr5_3:7893950-7893969 Msa0795880:intron 30.0%
! TTCGAAGGTACATATCATAT+TGG - chr5_3:7894030-7894049 Msa0795880:intron 30.0%
GGAAATATTAAACACATTGC+AGG + chr5_3:7894064-7894083 None:intergenic 30.0%
ACAACTGAAATGGATATACA+TGG + chr5_3:7894119-7894138 None:intergenic 30.0%
AAATTAATAGAACCAGTCGT+GGG - chr5_3:7894146-7894165 Msa0795880:intron 30.0%
ATAAACACATCTTATTGCTG+TGG + chr5_3:7894395-7894414 None:intergenic 30.0%
TCCAGATGAAGTAAATTTGA+TGG - chr5_3:7894536-7894555 Msa0795880:CDS 30.0%
TCCATCAAATTTACTTCATC+TGG + chr5_3:7894540-7894559 None:intergenic 30.0%
GAAGTAAATTTGATGGAAGA+TGG - chr5_3:7894543-7894562 Msa0795880:CDS 30.0%
TTCCTATTGTGACTTTGATT+TGG - chr5_3:7894596-7894615 Msa0795880:CDS 30.0%
TACCAAATCAAAGTCACAAT+AGG + chr5_3:7894601-7894620 None:intergenic 30.0%
!! TTGTGACTTTGATTTGGTAT+TGG - chr5_3:7894602-7894621 Msa0795880:CDS 30.0%
! GATTTGGTATTGGAATAGAT+TGG - chr5_3:7894612-7894631 Msa0795880:CDS 30.0%
AGGTTCATTGCTTAGAAATT+AGG - chr5_3:7894884-7894903 Msa0795880:CDS 30.0%
TTGTTGAATAAACGAAAACG+GGG - chr5_3:7894930-7894949 Msa0795880:CDS 30.0%
ATAAGTTATCATGAGTGAGA+AGG - chr5_3:7895066-7895085 Msa0795880:CDS 30.0%
TTGAACAATTCAGTCAGAAA+AGG - chr5_3:7895202-7895221 Msa0795880:five_prime_UTR 30.0%
GTTAACTAGAGAGTTCTACT+AGG + chr5_3:7890291-7890310 None:intergenic 35.0%
! ACTTTGTTGATGTTGATTGG+GGG + chr5_3:7890375-7890394 None:intergenic 35.0%
TAGGAAGAAGAAGAAGAAAG+GGG + chr5_3:7890401-7890420 None:intergenic 35.0%
GATAGGAAGAAGAAGAAGAA+AGG + chr5_3:7890403-7890422 None:intergenic 35.0%
! TTGAAATCGAAAGGGTTTTG+GGG + chr5_3:7890433-7890452 None:intergenic 35.0%
! GTTGAAATCGAAAGGGTTTT+GGG + chr5_3:7890434-7890453 None:intergenic 35.0%
! AGTTGAAATCGAAAGGGTTT+TGG + chr5_3:7890435-7890454 None:intergenic 35.0%
! TTAAAGCGTCAGTGTAATTC+TGG + chr5_3:7890615-7890634 None:intergenic 35.0%
CTGTTTCAGCTTACAAGAAA+GGG - chr5_3:7890731-7890750 Msa0795880:three_prime_UTR 35.0%
TGAAGATAAACCCTAGTTGT+AGG + chr5_3:7890916-7890935 None:intergenic 35.0%
TGCATCATCTTCACAAAATC+AGG + chr5_3:7890943-7890962 None:intergenic 35.0%
! AGAGAGTTATGCAAGCTTTT+GGG - chr5_3:7891010-7891029 Msa0795880:exon 35.0%
AATGTTAAGATTGGAAGAGG+TGG - chr5_3:7891042-7891061 Msa0795880:CDS 35.0%
TAATGCTGCGTATAAGAAGA+AGG - chr5_3:7891248-7891267 Msa0795880:CDS 35.0%
TCTGCATTATTCGAAAGCTT+TGG - chr5_3:7891287-7891306 Msa0795880:intron 35.0%
TGTATACTTGGAAATGGGAA+AGG - chr5_3:7891353-7891372 Msa0795880:intron 35.0%
ACATGATAGCCTTCTCAATT+TGG + chr5_3:7891781-7891800 None:intergenic 35.0%
TTGAGAAGGCTATCATGTAT+TGG - chr5_3:7891783-7891802 Msa0795880:intron 35.0%
!! TTTGATTTGTTCCTGACACT+TGG - chr5_3:7891848-7891867 Msa0795880:CDS 35.0%
ATTCTTCAACATTTGGAGGA+CGG + chr5_3:7892102-7892121 None:intergenic 35.0%
!! AGTGAAGGCTTTGGATAAAA+GGG + chr5_3:7892246-7892265 None:intergenic 35.0%
!! TAGTGAAGGCTTTGGATAAA+AGG + chr5_3:7892247-7892266 None:intergenic 35.0%
TCCTAATTAAAGGGTAGTGA+AGG + chr5_3:7892261-7892280 None:intergenic 35.0%
AGGAGTTTATAGGAGAATGA+AGG - chr5_3:7892277-7892296 Msa0795880:CDS 35.0%
!!! GAATGAAGGAGAGTGTTTTT+TGG - chr5_3:7892291-7892310 Msa0795880:CDS 35.0%
GAAGAAAAATATGCCATGCA+AGG + chr5_3:7892374-7892393 None:intergenic 35.0%
ATAAACCAAAGTCAACCTTC+AGG + chr5_3:7892683-7892702 None:intergenic 35.0%
GTTAAAGGGTCATTTAACTC+CGG + chr5_3:7892757-7892776 None:intergenic 35.0%
TTTCAAGACTGCTGAGAATT+TGG - chr5_3:7892791-7892810 Msa0795880:intron 35.0%
TTCAAGACTGCTGAGAATTT+GGG - chr5_3:7892792-7892811 Msa0795880:intron 35.0%
!! TGATTTTCCAGCAGAGTATT+TGG - chr5_3:7892851-7892870 Msa0795880:intron 35.0%
! ACAAAACCGCTGTTATGTTT+TGG + chr5_3:7892955-7892974 None:intergenic 35.0%
! AAGCTTGTTTCAGTGTTTGA+TGG - chr5_3:7892980-7892999 Msa0795880:intron 35.0%
ATAGGATTAGGAAGATTTCC+TGG - chr5_3:7893044-7893063 Msa0795880:intron 35.0%
AGATTTCCTGGTGTTTGAAT+AGG - chr5_3:7893056-7893075 Msa0795880:intron 35.0%
TTGTATCCTATTCAAACACC+AGG + chr5_3:7893065-7893084 None:intergenic 35.0%
ATAGGATTAGGAAGATTTCC+TGG - chr5_3:7893044-7893063 Msa0795880:intron 35.0%
AGATTTCCTGGTGTTTGAAT+AGG - chr5_3:7893056-7893075 Msa0795880:intron 35.0%
CCTCATACTGAAAAGATTCA+AGG + chr5_3:7893206-7893225 None:intergenic 35.0%
! CCTTGAATCTTTTCAGTATG+AGG - chr5_3:7893203-7893222 Msa0795880:intron 35.0%
! TTTTGGTAAGTCTCAATGAC+AGG + chr5_3:7893363-7893382 None:intergenic 35.0%
AGCTTCATTGAGTTTCTTCA+GGG + chr5_3:7893415-7893434 None:intergenic 35.0%
TATGAAAACCTTGTCTTGCA+GGG - chr5_3:7893623-7893642 Msa0795880:intron 35.0%
GTGTAATGCTTAATAGCTTC+AGG + chr5_3:7893676-7893695 None:intergenic 35.0%
AAGAAACCCGAAAAATCCTA+AGG - chr5_3:7893708-7893727 Msa0795880:intron 35.0%
CTATCTGAATCCTAACAAGT+TGG - chr5_3:7893771-7893790 Msa0795880:intron 35.0%
! ATGGAGTATTCCAACTTGTT+AGG + chr5_3:7893784-7893803 None:intergenic 35.0%
TGGAATACTCCATTTCTTTC+AGG - chr5_3:7893791-7893810 Msa0795880:intron 35.0%
TTTGCTTCACACAACTGAAA+TGG + chr5_3:7894129-7894148 None:intergenic 35.0%
CAAATTAATAGAACCAGTCG+TGG - chr5_3:7894145-7894164 Msa0795880:intron 35.0%
AATTAATAGAACCAGTCGTG+GGG - chr5_3:7894147-7894166 Msa0795880:intron 35.0%
!!! GACAGGTTTGCTTTTTTTCT+TGG - chr5_3:7894344-7894363 Msa0795880:CDS 35.0%
TGATTTCCAGGAAAATCCAA+AGG - chr5_3:7894444-7894463 Msa0795880:CDS 35.0%
TTACTTCATCTGGACAATTC+CGG + chr5_3:7894530-7894549 None:intergenic 35.0%
! GGTATTGGAATAGATTGGAT+TGG - chr5_3:7894617-7894636 Msa0795880:CDS 35.0%
! TGGATTGGAAGTACAATAGT+TGG - chr5_3:7894632-7894651 Msa0795880:CDS 35.0%
! GGATTGGAAGTACAATAGTT+GGG - chr5_3:7894633-7894652 Msa0795880:CDS 35.0%
!! GTATGTCTTGTGTTTGTTGT+AGG - chr5_3:7895107-7895126 Msa0795880:five_prime_UTR 35.0%
!!! GTTTGTTGTAGGCAGTATTT+TGG - chr5_3:7895118-7895137 Msa0795880:five_prime_UTR 35.0%
TCCTCATTGAACAATTGAGT+CGG - chr5_3:7895152-7895171 Msa0795880:five_prime_UTR 35.0%
!!! AAAAGGAGTTTTGCTGATTC+TGG - chr5_3:7895219-7895238 Msa0795880:five_prime_UTR 35.0%
GAGAGTGAAGAATTGAAGAG+AGG + chr5_3:7890353-7890372 None:intergenic 40.0%
GATCGGAGTTGAAATCGAAA+GGG + chr5_3:7890441-7890460 None:intergenic 40.0%
AGATCGGAGTTGAAATCGAA+AGG + chr5_3:7890442-7890461 None:intergenic 40.0%
TTTCAACTCCGATCTATCCA+TGG - chr5_3:7890447-7890466 Msa0795880:three_prime_UTR 40.0%
! TTCGACGGTTTTCTTTGCAT+CGG + chr5_3:7890638-7890657 None:intergenic 40.0%
! ACTCAAACCTGATTGGTCAA+AGG - chr5_3:7890657-7890676 Msa0795880:three_prime_UTR 40.0%
! CTCAAACCTGATTGGTCAAA+GGG - chr5_3:7890658-7890677 Msa0795880:three_prime_UTR 40.0%
TTGAGAAAGACCAAGATGAG+CGG + chr5_3:7890701-7890720 None:intergenic 40.0%
! GCTGTTTCAGCTTACAAGAA+AGG - chr5_3:7890730-7890749 Msa0795880:three_prime_UTR 40.0%
TCGGCTAAACCTGATTTCAA+GGG + chr5_3:7890781-7890800 None:intergenic 40.0%
ATCGGCTAAACCTGATTTCA+AGG + chr5_3:7890782-7890801 None:intergenic 40.0%
!! AAAAGCATCACCAAACGGAT+TGG + chr5_3:7890857-7890876 None:intergenic 40.0%
!! CCAGAAAAAGCATCACCAAA+CGG + chr5_3:7890862-7890881 None:intergenic 40.0%
TTACTGCTGATCCTACAACT+AGG - chr5_3:7890902-7890921 Msa0795880:three_prime_UTR 40.0%
TACTGCTGATCCTACAACTA+GGG - chr5_3:7890903-7890922 Msa0795880:three_prime_UTR 40.0%
! CAGAGAGTTATGCAAGCTTT+TGG - chr5_3:7891009-7891028 Msa0795880:exon 40.0%
! GAGAGTTATGCAAGCTTTTG+GGG - chr5_3:7891011-7891030 Msa0795880:exon 40.0%
!! AGCTTTGGAATTGGATGATG+AGG - chr5_3:7891302-7891321 Msa0795880:intron 40.0%
TTTCCAAGTATACAGCAGCA+CGG + chr5_3:7891347-7891366 None:intergenic 40.0%
TGCTGCTGTATACTTGGAAA+TGG - chr5_3:7891347-7891366 Msa0795880:intron 40.0%
GCTGCTGTATACTTGGAAAT+GGG - chr5_3:7891348-7891367 Msa0795880:intron 40.0%
ACTGTGCTATCTCTATGCAA+AGG - chr5_3:7891566-7891585 Msa0795880:CDS 40.0%
CTGTGCTATCTCTATGCAAA+GGG - chr5_3:7891567-7891586 Msa0795880:CDS 40.0%
ACCTAGGGAAAAAGTTGAAC+AGG + chr5_3:7891640-7891659 None:intergenic 40.0%
ATGAGAGAACTCGGACAATT+TGG + chr5_3:7892140-7892159 None:intergenic 40.0%
! TTGTCCGAGTTCTCTCATTT+TGG - chr5_3:7892142-7892161 Msa0795880:CDS 40.0%
!! TCTCTCATTTTGGAGGGATT+TGG - chr5_3:7892152-7892171 Msa0795880:CDS 40.0%
! ATTAACTGCCCATTCGAGTT+AGG - chr5_3:7892189-7892208 Msa0795880:CDS 40.0%
! TTAACTGCCCATTCGAGTTA+GGG - chr5_3:7892190-7892209 Msa0795880:CDS 40.0%
TTAAAGGGTAGTGAAGGCTT+TGG + chr5_3:7892255-7892274 None:intergenic 40.0%
GCCTTCACTACCCTTTAATT+AGG - chr5_3:7892257-7892276 Msa0795880:CDS 40.0%
AAAATATGCCATGCAAGGTG+AGG + chr5_3:7892369-7892388 None:intergenic 40.0%
CGGGAACTTAAAAATGCACT+GGG - chr5_3:7892418-7892437 Msa0795880:intron 40.0%
!!! GACTTTGAAGGGTGTTTTAG+AGG - chr5_3:7892445-7892464 Msa0795880:intron 40.0%
!!! GGAGCATCTTCACTTTTTCT+GGG + chr5_3:7892570-7892589 None:intergenic 40.0%
!!! AGGAGCATCTTCACTTTTTC+TGG + chr5_3:7892571-7892590 None:intergenic 40.0%
!! GTAGCCTTAAGGCTTTGAAT+GGG + chr5_3:7892654-7892673 None:intergenic 40.0%
ATCGTGGAATCTAATCACAC+CGG - chr5_3:7892735-7892754 Msa0795880:intron 40.0%
GGATACTAAGTGCAATAAGC+AGG + chr5_3:7892934-7892953 None:intergenic 40.0%
TCCTGGTGTTTGAATAGGAT+AGG - chr5_3:7893061-7893080 Msa0795880:intron 40.0%
TCCTATCCTATTCAAACACC+AGG + chr5_3:7893131-7893150 None:intergenic 40.0%
TGTGATAAGGCTGTTGAAAG+AGG - chr5_3:7893240-7893259 Msa0795880:intron 40.0%
! TGATAGCAAGAGCTTTGACA+AGG - chr5_3:7893289-7893308 Msa0795880:intron 40.0%
CAGCTTCATTGAGTTTCTTC+AGG + chr5_3:7893416-7893435 None:intergenic 40.0%
GAAACTCAATGAAGCTGAGA+AGG - chr5_3:7893419-7893438 Msa0795880:intron 40.0%
ATCTCTTAGTCTGATCTTCC+AGG - chr5_3:7893513-7893532 Msa0795880:intron 40.0%
ATAATGTGGAAATAGAGGCC+AGG + chr5_3:7893566-7893585 None:intergenic 40.0%
GTATGAAAACCTTGTCTTGC+AGG - chr5_3:7893622-7893641 Msa0795880:intron 40.0%
TATTCATTCCCTGCAAGACA+AGG + chr5_3:7893634-7893653 None:intergenic 40.0%
TTGAATTCAGGTGGTCCTTA+TGG - chr5_3:7893743-7893762 Msa0795880:intron 40.0%
AGCTGCATGTTACACAAAAC+TGG - chr5_3:7893827-7893846 Msa0795880:intron 40.0%
GCTGCATGTTACACAAAACT+GGG - chr5_3:7893828-7893847 Msa0795880:intron 40.0%
CTGCATGTTACACAAAACTG+GGG - chr5_3:7893829-7893848 Msa0795880:intron 40.0%
TGCATGTTACACAAAACTGG+GGG - chr5_3:7893830-7893849 Msa0795880:intron 40.0%
TCTGCATCCTTTAAACCTTC+AGG + chr5_3:7893861-7893880 None:intergenic 40.0%
!! AAAGGCTTTGGAAACATACC+AGG - chr5_3:7893962-7893981 Msa0795880:intron 40.0%
! CTTTGGAAACATACCAGGAA+GGG - chr5_3:7893967-7893986 Msa0795880:intron 40.0%
GAAACATGATGCAAACAACC+AGG - chr5_3:7893992-7894011 Msa0795880:intron 40.0%
AACAACCAGGAATTGCTTGA+AGG - chr5_3:7894005-7894024 Msa0795880:intron 40.0%
ACAACCAGGAATTGCTTGAA+GGG - chr5_3:7894006-7894025 Msa0795880:intron 40.0%
TTGCAGCCAAAAAAGGAAAC+TGG + chr5_3:7894085-7894104 None:intergenic 40.0%
! ACATGACTTGCAGCCAAAAA+AGG + chr5_3:7894092-7894111 None:intergenic 40.0%
TGTAACTCCTGAAGAGTTGA+AGG - chr5_3:7894171-7894190 Msa0795880:intron 40.0%
! TGAAGGATGTTCTGAATCTC+TGG + chr5_3:7894310-7894329 None:intergenic 40.0%
AGCAAACCTGTCTCATAACA+GGG + chr5_3:7894336-7894355 None:intergenic 40.0%
AAGCAAACCTGTCTCATAAC+AGG + chr5_3:7894337-7894356 None:intergenic 40.0%
!! TAATGGTTGGCTTTGTATGC+AGG - chr5_3:7894414-7894433 Msa0795880:CDS 40.0%
!! TTGGCTTTGTATGCAGGTAT+TGG - chr5_3:7894420-7894439 Msa0795880:CDS 40.0%
AGCTCTTGCGAAAAAGCAAT+TGG - chr5_3:7894567-7894586 Msa0795880:CDS 40.0%
TGCGTTTACAATGCAGTAAC+AGG - chr5_3:7894814-7894833 Msa0795880:CDS 40.0%
! GAACCTTTTCTTGCAAAGAG+AGG + chr5_3:7894870-7894889 None:intergenic 40.0%
TAGGTGCAAGTGTAATGTTG+TGG - chr5_3:7894903-7894922 Msa0795880:CDS 40.0%
ATAAACGAAAACGGGGAAAG+TGG - chr5_3:7894937-7894956 Msa0795880:CDS 40.0%
! TTTAGAGCAACGACCTTGAT+GGG + chr5_3:7895047-7895066 None:intergenic 40.0%
! ATTTAGAGCAACGACCTTGA+TGG + chr5_3:7895048-7895067 None:intergenic 40.0%
! ACCGACTCAATTGTTCAATG+AGG + chr5_3:7895156-7895175 None:intergenic 40.0%
AGAGAGTTCTACTAGGGTCT+GGG + chr5_3:7890284-7890303 None:intergenic 45.0%
TAGAGAGTTCTACTAGGGTC+TGG + chr5_3:7890285-7890304 None:intergenic 45.0%
!! GAGAGAGTGGGTTAGGTTAT+AGG + chr5_3:7890325-7890344 None:intergenic 45.0%
AGAGAGGATAGAGAGAGAGT+GGG + chr5_3:7890337-7890356 None:intergenic 45.0%
AAGAGAGGATAGAGAGAGAG+TGG + chr5_3:7890338-7890357 None:intergenic 45.0%
!!! GGTTTTGGGGATTTTGCGAT+AGG + chr5_3:7890420-7890439 None:intergenic 45.0%
TGATGGCATCTGAGAAGTGA+CGG + chr5_3:7890534-7890553 None:intergenic 45.0%
ATTGGTGGGGGAAAGATTGA+TGG + chr5_3:7890551-7890570 None:intergenic 45.0%
AATACAGGACGTGATTGGTG+GGG + chr5_3:7890564-7890583 None:intergenic 45.0%
GAATACAGGACGTGATTGGT+GGG + chr5_3:7890565-7890584 None:intergenic 45.0%
GTTGGAATACAGGACGTGAT+TGG + chr5_3:7890569-7890588 None:intergenic 45.0%
! CCAATCAGGTTTGAGTTCGA+CGG + chr5_3:7890653-7890672 None:intergenic 45.0%
CTGTAACCCTTTGACCAATC+AGG + chr5_3:7890667-7890686 None:intergenic 45.0%
!!! CCGTTTGGTGATGCTTTTTC+TGG - chr5_3:7890859-7890878 Msa0795880:three_prime_UTR 45.0%
!!! TGGTGATGCTTTTTCTGGAC+CGG - chr5_3:7890864-7890883 Msa0795880:three_prime_UTR 45.0%
! TTTTTCTGGACCGGAGATGT+GGG - chr5_3:7890873-7890892 Msa0795880:three_prime_UTR 45.0%
! TAACCGTGCTGCTGTATACT+TGG - chr5_3:7891341-7891360 Msa0795880:intron 45.0%
!! GCCTGTTCAACTTTTTCCCT+AGG - chr5_3:7891636-7891655 Msa0795880:CDS 45.0%
TTGTTCCTGACACTTGGAAG+TGG - chr5_3:7891854-7891873 Msa0795880:CDS 45.0%
TATCACCACTTCCAAGTGTC+AGG + chr5_3:7891862-7891881 None:intergenic 45.0%
AACTCGGACAATTTGGAGGA+GGG + chr5_3:7892133-7892152 None:intergenic 45.0%
AGAGAACTCGGACAATTTGG+AGG + chr5_3:7892137-7892156 None:intergenic 45.0%
! TCCGAGTTCTCTCATTTTGG+AGG - chr5_3:7892145-7892164 Msa0795880:CDS 45.0%
CCCTCCAAAATGAGAGAACT+CGG + chr5_3:7892149-7892168 None:intergenic 45.0%
! CCGAGTTCTCTCATTTTGGA+GGG - chr5_3:7892146-7892165 Msa0795880:CDS 45.0%
! TAACTGCCCATTCGAGTTAG+GGG - chr5_3:7892191-7892210 Msa0795880:CDS 45.0%
ATAGTCCCCCTAACTCGAAT+GGG + chr5_3:7892200-7892219 None:intergenic 45.0%
!! GAAGGCTTTGGATAAAAGGG+AGG + chr5_3:7892243-7892262 None:intergenic 45.0%
GCGGGAACTTAAAAATGCAC+TGG - chr5_3:7892417-7892436 Msa0795880:intron 45.0%
CACTGGGAGAAGACTTTGAA+GGG - chr5_3:7892434-7892453 Msa0795880:intron 45.0%
GTCTCCCATTCAAAGCCTTA+AGG - chr5_3:7892647-7892666 Msa0795880:intron 45.0%
!! GGTAGCCTTAAGGCTTTGAA+TGG + chr5_3:7892655-7892674 None:intergenic 45.0%
TCAAAGCCTTAAGGCTACCT+TGG - chr5_3:7892656-7892675 Msa0795880:intron 45.0%
AAAGTCAACCTTCAGGACCA+AGG + chr5_3:7892676-7892695 None:intergenic 45.0%
! TTGGTCCTGAAGGTTGACTT+TGG - chr5_3:7892675-7892694 Msa0795880:intron 45.0%
! GCAAGAGCTTTGACAAGGAA+AGG - chr5_3:7893294-7893313 Msa0795880:intron 45.0%
ACAAGGAAAGGAACTGCCAT+GGG - chr5_3:7893306-7893325 Msa0795880:intron 45.0%
AGGAACTGCCATGGGTAAAA+CGG - chr5_3:7893314-7893333 Msa0795880:intron 45.0%
!!! GCATTTTGCCGTTTTACCCA+TGG + chr5_3:7893325-7893344 None:intergenic 45.0%
! TGAGTTTCTTCAGGGTGTCT+GGG + chr5_3:7893407-7893426 None:intergenic 45.0%
! TTGAGTTTCTTCAGGGTGTC+TGG + chr5_3:7893408-7893427 None:intergenic 45.0%
CGATCCAAATTTGGCTGATG+AGG - chr5_3:7893473-7893492 Msa0795880:intron 45.0%
CTCTCCTCATCAGCCAAATT+TGG + chr5_3:7893480-7893499 None:intergenic 45.0%
GCTGATGAGGAGAGAGAAAA+AGG - chr5_3:7893486-7893505 Msa0795880:intron 45.0%
GGCAATGCCTGAAGGTTTAA+AGG - chr5_3:7893851-7893870 Msa0795880:intron 45.0%
TATAACCCTTGGTGAAGGTC+GGG + chr5_3:7893902-7893921 None:intergenic 45.0%
GTATAACCCTTGGTGAAGGT+CGG + chr5_3:7893903-7893922 None:intergenic 45.0%
!! GCTTTGGAAACATACCAGGA+AGG - chr5_3:7893966-7893985 Msa0795880:intron 45.0%
CATCATGTTTCAACCCTTCC+TGG + chr5_3:7893983-7894002 None:intergenic 45.0%
CAACCAGGAATTGCTTGAAG+GGG - chr5_3:7894007-7894026 Msa0795880:intron 45.0%
AATTGCTTGAAGGGGTTCGA+AGG - chr5_3:7894015-7894034 Msa0795880:intron 45.0%
TGTCTCTCCTTCAACTCTTC+AGG + chr5_3:7894181-7894200 None:intergenic 45.0%
TGAAGAGTTGAAGGAGAGAC+AGG - chr5_3:7894180-7894199 Msa0795880:intron 45.0%
GTCTCATAACAGGGTCTTGA+AGG + chr5_3:7894327-7894346 None:intergenic 45.0%
TCAAGACCCTGTTATGAGAC+AGG - chr5_3:7894327-7894346 Msa0795880:CDS 45.0%
!! GCAGGTATTGGTTGATTTCC+AGG - chr5_3:7894432-7894451 Msa0795880:CDS 45.0%
ACAGGAACATACCAAGAACC+CGG - chr5_3:7894471-7894490 Msa0795880:CDS 45.0%
ATCCAAAAGCTGATCAGTGC+CGG - chr5_3:7894508-7894527 Msa0795880:CDS 45.0%
GTCGTGTGCATGCTTTCAAT+TGG - chr5_3:7894740-7894759 Msa0795880:CDS 45.0%
GCACCTCTCTTTGCAAGAAA+AGG - chr5_3:7894864-7894883 Msa0795880:CDS 45.0%
! TTCTACTAGGGTCTGGGGTT+GGG + chr5_3:7890278-7890297 None:intergenic 50.0%
GAGAGTTCTACTAGGGTCTG+GGG + chr5_3:7890283-7890302 None:intergenic 50.0%
! GGATAGAGAGAGAGTGGGTT+AGG + chr5_3:7890332-7890351 None:intergenic 50.0%
TTCGTCGGCCATGGATAGAT+CGG + chr5_3:7890458-7890477 None:intergenic 50.0%
!! GCCTTTGGCTTTAGCTTCGT+CGG + chr5_3:7890473-7890492 None:intergenic 50.0%
!! ATCTGAGAAGTGACGGATGG+CGG + chr5_3:7890527-7890546 None:intergenic 50.0%
ATACAGGACGTGATTGGTGG+GGG + chr5_3:7890563-7890582 None:intergenic 50.0%
GGAATACAGGACGTGATTGG+TGG + chr5_3:7890566-7890585 None:intergenic 50.0%
CCGTCGAACTCAAACCTGAT+TGG - chr5_3:7890650-7890669 Msa0795880:three_prime_UTR 50.0%
TCAAAGGGTTACAGCCGTCT+CGG - chr5_3:7890673-7890692 Msa0795880:three_prime_UTR 50.0%
! CTTTTTCTGGACCGGAGATG+TGG - chr5_3:7890872-7890891 Msa0795880:three_prime_UTR 50.0%
GTAAGTTTCGCCCACATCTC+CGG + chr5_3:7890886-7890905 None:intergenic 50.0%
! TGGAAGAGGTGGTGATGATG+TGG - chr5_3:7891053-7891072 Msa0795880:CDS 50.0%
AGGAGAAGGAAGTGAAGCAG+AGG - chr5_3:7891193-7891212 Msa0795880:intron 50.0%
GAAGGAAGTGAAGCAGAGGA+AGG - chr5_3:7891197-7891216 Msa0795880:intron 50.0%
ATACAGCAGCACGGTTAGTG+AGG + chr5_3:7891338-7891357 None:intergenic 50.0%
GAACTCGGACAATTTGGAGG+AGG + chr5_3:7892134-7892153 None:intergenic 50.0%
! AACTGCCCATTCGAGTTAGG+GGG - chr5_3:7892192-7892211 Msa0795880:CDS 50.0%
GATAGTCCCCCTAACTCGAA+TGG + chr5_3:7892201-7892220 None:intergenic 50.0%
! ACTAGTCTCCTCACCTTGCA+TGG - chr5_3:7892358-7892377 Msa0795880:intron 50.0%
GCACTGGGAGAAGACTTTGA+AGG - chr5_3:7892433-7892452 Msa0795880:intron 50.0%
AGACTAGAGAGAGAGAGGGA+GGG + chr5_3:7892631-7892650 None:intergenic 50.0%
TGGGAGACTAGAGAGAGAGA+GGG + chr5_3:7892635-7892654 None:intergenic 50.0%
ATGGGAGACTAGAGAGAGAG+AGG + chr5_3:7892636-7892655 None:intergenic 50.0%
! TCAGGACCAAGGTAGCCTTA+AGG + chr5_3:7892665-7892684 None:intergenic 50.0%
TAAGGCTACCTTGGTCCTGA+AGG - chr5_3:7892665-7892684 Msa0795880:intron 50.0%
GAGGATGCCAAATACTCTGC+TGG + chr5_3:7892861-7892880 None:intergenic 50.0%
GACAAGGAAAGGAACTGCCA+TGG - chr5_3:7893305-7893324 Msa0795880:intron 50.0%
! GGTGCTCTGTAAGCGCTTTT+TGG + chr5_3:7893380-7893399 None:intergenic 50.0%
! TCTTCAGGGTGTCTGGGTTA+CGG + chr5_3:7893401-7893420 None:intergenic 50.0%
CTTGCAGGAAATGAAGAGCC+TGG + chr5_3:7893534-7893553 None:intergenic 50.0%
TGGAAATAGAGGCCAGGAGA+AGG + chr5_3:7893560-7893579 None:intergenic 50.0%
CCTTCACCAAGGGTTATACC+CGG - chr5_3:7893904-7893923 Msa0795880:intron 50.0%
ACCAAGGGTTATACCCGGAA+GGG - chr5_3:7893909-7893928 Msa0795880:intron 50.0%
AAAACTGAACCGCACCCTTC+CGG + chr5_3:7893926-7893945 None:intergenic 50.0%
GAACCCCTTCAAGCAATTCC+TGG + chr5_3:7894013-7894032 None:intergenic 50.0%
! GTGCAGCCTTTGGATTTTCC+TGG + chr5_3:7894453-7894472 None:intergenic 50.0%
GGAAAATCCAAAGGCTGCAC+AGG - chr5_3:7894453-7894472 Msa0795880:CDS 50.0%
GTATGTTCCTGTGCAGCCTT+TGG + chr5_3:7894463-7894482 None:intergenic 50.0%
CAGGAACATACCAAGAACCC+GGG - chr5_3:7894472-7894491 Msa0795880:CDS 50.0%
TGGATCTTGTCCATCACACC+CGG + chr5_3:7894493-7894512 None:intergenic 50.0%
!!! TTCCGGCACTGATCAGCTTT+TGG + chr5_3:7894513-7894532 None:intergenic 50.0%
CAGGCAATACGAGTCTCTGT+AGG - chr5_3:7894833-7894852 Msa0795880:CDS 50.0%
!! ATGTCGAGCTGCTTGCTATG+AGG - chr5_3:7894969-7894988 Msa0795880:CDS 50.0%
! TCTACTAGGGTCTGGGGTTG+GGG + chr5_3:7890277-7890296 None:intergenic 55.0%
! GTTCTACTAGGGTCTGGGGT+TGG + chr5_3:7890279-7890298 None:intergenic 55.0%
GCCGACGAAGCTAAAGCCAA+AGG - chr5_3:7890469-7890488 Msa0795880:three_prime_UTR 55.0%
GGAGAATGCAGCGTTGCCTT+TGG + chr5_3:7890488-7890507 None:intergenic 55.0%
! GGCATCTGAGAAGTGACGGA+TGG + chr5_3:7890530-7890549 None:intergenic 55.0%
CAGCGGATCGGTTGGAATAC+AGG + chr5_3:7890579-7890598 None:intergenic 55.0%
AGCCGATGCTCAAAAAGCCG+CGG - chr5_3:7890795-7890814 Msa0795880:three_prime_UTR 55.0%
!! TCACCAAACGGATTGGCACC+CGG + chr5_3:7890850-7890869 None:intergenic 55.0%
GCCTGATATGCCGTCCAGTT+CGG - chr5_3:7891080-7891099 Msa0795880:CDS 55.0%
TCCGAACTGGACGGCATATC+AGG + chr5_3:7891084-7891103 None:intergenic 55.0%
ATATGCCGTCCAGTTCGGAG+AGG - chr5_3:7891085-7891104 Msa0795880:CDS 55.0%
CTCTTCCTCTCCGAACTGGA+CGG + chr5_3:7891093-7891112 None:intergenic 55.0%
AGCTCTCTTCCTCTCCGAAC+TGG + chr5_3:7891097-7891116 None:intergenic 55.0%
GAAGAGAGCTGCTGAACCTG+AGG - chr5_3:7891107-7891126 Msa0795880:CDS 55.0%
TGAACCTGAGGTGGCAAAGC+AGG - chr5_3:7891119-7891138 Msa0795880:intron 55.0%
TCATCAGCCACCTCCTCCAT+TGG + chr5_3:7891174-7891193 None:intergenic 55.0%
AATGGAGGAGGTGGCTGATG+AGG - chr5_3:7891173-7891192 Msa0795880:intron 55.0%
AGTGAAGCAGAGGAAGGCTG+AGG - chr5_3:7891203-7891222 Msa0795880:intron 55.0%
AGCAGCACGGTTAGTGAGGA+AGG + chr5_3:7891334-7891353 None:intergenic 55.0%
GACTAGAGAGAGAGAGGGAG+GGG + chr5_3:7892630-7892649 None:intergenic 55.0%
GAGACTAGAGAGAGAGAGGG+AGG + chr5_3:7892632-7892651 None:intergenic 55.0%
TCCTGCAAGCATCCTTCTCC+TGG - chr5_3:7893545-7893564 Msa0795880:intron 55.0%
AAACTGGGGGCAATGCCTGA+AGG - chr5_3:7893843-7893862 Msa0795880:intron 55.0%
CTTGACCCGACCTTCACCAA+GGG - chr5_3:7893894-7893913 Msa0795880:intron 55.0%
CCGGGTATAACCCTTGGTGA+AGG + chr5_3:7893907-7893926 None:intergenic 55.0%
CACCAAGGGTTATACCCGGA+AGG - chr5_3:7893908-7893927 Msa0795880:intron 55.0%
ACCCTTCCGGGTATAACCCT+TGG + chr5_3:7893913-7893932 None:intergenic 55.0%
AAACTGAACCGCACCCTTCC+GGG + chr5_3:7893925-7893944 None:intergenic 55.0%
AGGAGTTACATCCCCACGAC+TGG + chr5_3:7894161-7894180 None:intergenic 55.0%
TACCAAGAACCCGGGTGTGA+TGG - chr5_3:7894480-7894499 Msa0795880:CDS 55.0%
GGATCTTGTCCATCACACCC+GGG + chr5_3:7894492-7894511 None:intergenic 55.0%
! GGCTTTAGCTTCGTCGGCCA+TGG + chr5_3:7890467-7890486 None:intergenic 60.0%
GGCAACGCTGCATTCTCCTC+CGG - chr5_3:7890490-7890509 Msa0795880:three_prime_UTR 60.0%
! GATGGCGGTTGCGAAATCGC+CGG + chr5_3:7890512-7890531 None:intergenic 60.0%
! GAGAAGCGTGAGCAGCGGAT+CGG + chr5_3:7890591-7890610 None:intergenic 60.0%
! CTGGAGAGAAGCGTGAGCAG+CGG + chr5_3:7890596-7890615 None:intergenic 60.0%
! CAAGATGAGCGGCACCGAGA+CGG + chr5_3:7890690-7890709 None:intergenic 60.0%
!! CGCCGCGGCTTTTTGAGCAT+CGG + chr5_3:7890800-7890819 None:intergenic 60.0%
CGATGCTCAAAAAGCCGCGG+CGG - chr5_3:7890798-7890817 Msa0795880:three_prime_UTR 60.0%
CCTAGAAAAACTCGCCGCCG+CGG + chr5_3:7890815-7890834 None:intergenic 60.0%
TTCTAGGCCACGTTCTGCGC+CGG - chr5_3:7890828-7890847 Msa0795880:three_prime_UTR 60.0%
GAGAGCTGCTGAACCTGAGG+TGG - chr5_3:7891110-7891129 Msa0795880:CDS 60.0%
ACCTGAGGTGGCAAAGCAGG+CGG - chr5_3:7891122-7891141 Msa0795880:intron 60.0%
!! TCCTCCATTGGCTCCGGTTC+CGG + chr5_3:7891162-7891181 None:intergenic 60.0%
GGAGGTGGCTGATGAGGAGA+AGG - chr5_3:7891179-7891198 Msa0795880:intron 60.0%
TGAGGCGCAGAAGGAGAAGG+AGG - chr5_3:7891221-7891240 Msa0795880:intron 60.0%
GGGCGAAGGGGGTAGAGAAT+AGG + chr5_3:7892591-7892610 None:intergenic 60.0%
AGAGAGAGAGAGGGAGGGGA+CGG + chr5_3:7892626-7892645 None:intergenic 60.0%
GCCAGGAGAAGGATGCTTGC+AGG + chr5_3:7893549-7893568 None:intergenic 60.0%
GCTTGACCCGACCTTCACCA+AGG - chr5_3:7893893-7893912 Msa0795880:intron 60.0%
GGGTTATACCCGGAAGGGTG+CGG - chr5_3:7893914-7893933 Msa0795880:intron 60.0%
GTCCATCACACCCGGGTTCT+TGG + chr5_3:7894485-7894504 None:intergenic 60.0%
AGCGTGAGCAGCGGATCGGT+TGG + chr5_3:7890587-7890606 None:intergenic 65.0%
!! CGTCTCGGTGCCGCTCATCT+TGG - chr5_3:7890688-7890707 Msa0795880:three_prime_UTR 65.0%
! CCGCGGCGGCGAGTTTTTCT+AGG - chr5_3:7890812-7890831 Msa0795880:three_prime_UTR 65.0%
TCTAGGCCACGTTCTGCGCC+GGG - chr5_3:7890829-7890848 Msa0795880:three_prime_UTR 65.0%
TCCGCCTGCTTTGCCACCTC+AGG + chr5_3:7891126-7891145 None:intergenic 65.0%
TGAGGTGGCAAAGCAGGCGG+AGG - chr5_3:7891125-7891144 Msa0795880:intron 65.0%
GGTTGAGCCTGAGCCGGAAC+CGG - chr5_3:7891146-7891165 Msa0795880:intron 65.0%
! ATTGGCTCCGGTTCCGGCTC+AGG + chr5_3:7891156-7891175 None:intergenic 65.0%
TGAGCCGGAACCGGAGCCAA+TGG - chr5_3:7891155-7891174 Msa0795880:intron 65.0%
GGAACCGGAGCCAATGGAGG+AGG - chr5_3:7891161-7891180 Msa0795880:intron 65.0%
ACCGGAGCCAATGGAGGAGG+TGG - chr5_3:7891164-7891183 Msa0795880:intron 65.0%
!! GCCACCTCCTCCATTGGCTC+CGG + chr5_3:7891168-7891187 None:intergenic 65.0%
GAGGAAGGCTGAGGCGCAGA+AGG - chr5_3:7891212-7891231 Msa0795880:intron 65.0%
GGCTGAGGCGCAGAAGGAGA+AGG - chr5_3:7891218-7891237 Msa0795880:intron 65.0%
GCGCAGAAGGAGAAGGAGGC+TGG - chr5_3:7891225-7891244 Msa0795880:CDS 65.0%
!! GAAGGGCTTTGGGGCGAAGG+GGG + chr5_3:7892602-7892621 None:intergenic 65.0%
!! CGAAGGGCTTTGGGGCGAAG+GGG + chr5_3:7892603-7892622 None:intergenic 65.0%
!! GCGAAGGGCTTTGGGGCGAA+GGG + chr5_3:7892604-7892623 None:intergenic 65.0%
AGGGGACGGCGAAGGGCTTT+GGG + chr5_3:7892612-7892631 None:intergenic 65.0%
GGCGGTTGCGAAATCGCCGG+AGG + chr5_3:7890509-7890528 None:intergenic 70.0%
TTGGCACCCGGCGCAGAACG+TGG + chr5_3:7890838-7890857 None:intergenic 70.0%
GCGCCGGGTGCCAATCCGTT+TGG - chr5_3:7890844-7890863 Msa0795880:three_prime_UTR 70.0%
GGCGGAGGTTGAGCCTGAGC+CGG - chr5_3:7891140-7891159 Msa0795880:intron 70.0%
GCCGGAACCGGAGCCAATGG+AGG - chr5_3:7891158-7891177 Msa0795880:intron 70.0%
!! GGCGAAGGGCTTTGGGGCGA+AGG + chr5_3:7892605-7892624 None:intergenic 70.0%
GGGGACGGCGAAGGGCTTTG+GGG + chr5_3:7892611-7892630 None:intergenic 70.0%
GAGGGGACGGCGAAGGGCTT+TGG + chr5_3:7892613-7892632 None:intergenic 70.0%
GAGAGGGAGGGGACGGCGAA+GGG + chr5_3:7892619-7892638 None:intergenic 70.0%
AGAGAGGGAGGGGACGGCGA+AGG + chr5_3:7892620-7892639 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 7890271 7895301 7890271 ID=Msa0795880;Name=Msa0795880
chr5_3 mRNA 7890271 7895301 7890271 ID=Msa0795880-mRNA-1;Parent=Msa0795880;Name=Msa0795880-mRNA-1;_AED=0.04;_eAED=0.04;_QI=195|1|1|1|1|1|7|752|582
chr5_3 exon 7890271 7891136 7890271 ID=Msa0795880-mRNA-1:exon:3302;Parent=Msa0795880-mRNA-1
chr5_3 exon 7891224 7891283 7891224 ID=Msa0795880-mRNA-1:exon:3301;Parent=Msa0795880-mRNA-1
chr5_3 exon 7891371 7891437 7891371 ID=Msa0795880-mRNA-1:exon:3300;Parent=Msa0795880-mRNA-1
chr5_3 exon 7891536 7891759 7891536 ID=Msa0795880-mRNA-1:exon:3299;Parent=Msa0795880-mRNA-1
chr5_3 exon 7891843 7891928 7891843 ID=Msa0795880-mRNA-1:exon:3298;Parent=Msa0795880-mRNA-1
chr5_3 exon 7892065 7892353 7892065 ID=Msa0795880-mRNA-1:exon:3297;Parent=Msa0795880-mRNA-1
chr5_3 exon 7894198 7895301 7894198 ID=Msa0795880-mRNA-1:exon:3296;Parent=Msa0795880-mRNA-1
chr5_3 five_prime_UTR 7895107 7895301 7895107 ID=Msa0795880-mRNA-1:five_prime_utr;Parent=Msa0795880-mRNA-1
chr5_3 CDS 7894198 7895106 7894198 ID=Msa0795880-mRNA-1:cds;Parent=Msa0795880-mRNA-1
chr5_3 CDS 7892065 7892353 7892065 ID=Msa0795880-mRNA-1:cds;Parent=Msa0795880-mRNA-1
chr5_3 CDS 7891843 7891928 7891843 ID=Msa0795880-mRNA-1:cds;Parent=Msa0795880-mRNA-1
chr5_3 CDS 7891536 7891759 7891536 ID=Msa0795880-mRNA-1:cds;Parent=Msa0795880-mRNA-1
chr5_3 CDS 7891371 7891437 7891371 ID=Msa0795880-mRNA-1:cds;Parent=Msa0795880-mRNA-1
chr5_3 CDS 7891224 7891283 7891224 ID=Msa0795880-mRNA-1:cds;Parent=Msa0795880-mRNA-1
chr5_3 CDS 7891023 7891136 7891023 ID=Msa0795880-mRNA-1:cds;Parent=Msa0795880-mRNA-1
chr5_3 three_prime_UTR 7890271 7891022 7890271 ID=Msa0795880-mRNA-1:three_prime_utr;Parent=Msa0795880-mRNA-1
Gene Sequence

>Msa0795880

ATGGCCGACGAAGCTAAAGCCAAAGGCAACGCTGCATTCTCCTCCGGCGATTTCGCAACCGCCATCCGTCACTTCTCAGATGCCATCAATCTTTCCCCCACCAATCACGTCCTGTATTCCAACCGATCCGCTGCTCACGCTTCTCTCCAGAATTACACTGACGCTTTAACCGATGCAAAGAAAACCGTCGAACTCAAACCTGATTGGTCAAAGGGTTACAGCCGTCTCGGTGCCGCTCATCTTGGTCTTTCTCAATACGACGAAGCTGTTTCAGCTTACAAGAAAGGGTTAGAAATTGATCCTAATAATGAACCCTTGAAATCAGGTTTAGCCGATGCTCAAAAAGCCGCGGCGGCGAGTTTTTCTAGGCCACGTTCTGCGCCGGGTGCCAATCCGTTTGGTGATGCTTTTTCTGGACCGGAGATGTGGGCGAAACTTACTGCTGATCCTACAACTAGGGTTTATCTTCAACAGCCTGATTTTGTGAAGATGATGCAAGATATTCAAAAGGATCCCAATAATTTGAATTTGTATTTGAAGGATCAGAGAGTTATGCAAGCTTTTGGGGTTTTGCTTAATGTTAAGATTGGAAGAGGTGGTGATGATGTGGATATGCCTGATATGCCGTCCAGTTCGGAGAGGAAGAGAGCTGCTGAACCTGAGGTGGCAAAGCAGGCGGAGGTTGAGCCTGAGCCGGAACCGGAGCCAATGGAGGAGGTGGCTGATGAGGAGAAGGAAGTGAAGCAGAGGAAGGCTGAGGCGCAGAAGGAGAAGGAGGCTGGTAATGCTGCGTATAAGAAGAAGGATTTTGATACTGCGATTCTGCATTATTCGAAAGCTTTGGAATTGGATGATGAGGATGTTTCCTTCCTCACTAACCGTGCTGCTGTATACTTGGAAATGGGAAAGTATGAGGATTGCATAAAAGATTGTGATAAGGCTGTTGAAAGAGGACGAGAGCTAAGAGCAGACTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAACTGCCATGGGTAAAACGGCAAAATGCTCTAAAGATTATGAACCTGTCATTGAGACTTACCAAAAAGCGCTTACAGAGCACCGTAACCCAGACACCCTGAAGAAACTCAATGAAGCTGAGAAGGCCAAGAAAGAACTAGAACAACAAGAATACTTCGATCCAAATTTGGCTGATGAGGAGAGAGAAAAAGGGAATGAATACTTTAAGCAGCAGAAGTATCCTGAAGCTATTAAGCATTACACAGAGTCTATAAAAAGAAACCCGAAAAATCCTAAGGCTTATAGTAACAGAGCTGCATGTTACACAAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGTATTGAGCTTGACCCGACCTTCACCAAGGGTTATACCCGGAAGGGTGCGGTTCAGTTTTTCATGAAAGAATATGAAAAGGCTTTGGAAACATACCAGGAAGGGTTGAAACATGATGCAAACAACCAGGAATTGCTTGAAGGGGTTCGAAGTTGTGTGAAGCAAATTAATAGAACCAGTCGTGGGGATGTAACTCCTGAAGAGTTGAAGGAGAGACAGGCTAAGGCAATGCAAGATCCAGAGATTCAGAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCAAAGGCTGCACAGGAACATACCAAGAACCCGGGTGTGATGGACAAGATCCAAAAGCTGATCAGTGCCGGAATTGTCCAGATGAAGTAA
Protein sequence

>Msa0795880

MADEAKAKGNAAFSSGDFATAIRHFSDAINLSPTNHVLYSNRSAAHASLQNYTDALTDAKKTVELKPDWSKGYSRLGAAHLGLSQYDEAVSAYKKGLEIDPNNEPLKSGLADAQKAAAASFSRPRSAPGANPFGDAFSGPEMWAKLTADPTTRVYLQQPDFVKMMQDIQKDPNNLNLYLKDQRVMQAFGVLLNVKIGRGGDDVDMPDMPSSSERKRAAEPEVAKQAEVEPEPEPEPMEEVADEEKEVKQRKAEAQKEKEAGNAAYKKKDFDTAILHYSKALELDDEDVSFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRADYKMIARALTRKGTAMGKTAKCSKDYEPVIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPNLADEEREKGNEYFKQQKYPEAIKHYTESIKRNPKNPKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQFFMKEYEKALETYQEGLKHDANNQELLEGVRSCVKQINRTSRGDVTPEELKERQAKAMQDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPGVMDKIQKLISAGIVQMK*