Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833890 | XP_003611369.1 | 97.445 | 548 | 12 | 2 | 1 | 546 | 1 | 548 | 0.0 | 1106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833890 | sp|O23522|PLA14_ARATH | 55.179 | 531 | 198 | 10 | 25 | 546 | 18 | 517 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833890 | G7JXH0 | 97.445 | 548 | 12 | 2 | 1 | 546 | 1 | 548 | 0.0 | 1106 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051050 | Msa0833890 | 0.829504 | 4.962240e-55 | -8.615850e-47 |
| Msa0101240 | Msa0833890 | 0.826374 | 2.809636e-54 | -8.615850e-47 |
| Msa0615290 | Msa0833890 | 0.806629 | 7.495860e-50 | -8.615850e-47 |
| Msa0754770 | Msa0833890 | 0.968060 | 3.830216e-128 | -8.615850e-47 |
| Msa0754810 | Msa0833890 | 0.827781 | 1.294514e-54 | -8.615850e-47 |
| Msa0796630 | Msa0833890 | 0.967030 | 1.017329e-126 | -8.615850e-47 |
| Msa0833890 | Msa0834180 | 0.996188 | 1.943805e-224 | -8.615850e-47 |
| Msa0833890 | Msa0899970 | 0.814543 | 1.460610e-51 | -8.615850e-47 |
| Msa0833890 | Msa0965290 | 0.803332 | 3.666753e-49 | -8.615850e-47 |
| Msa0833890 | Msa0999680 | 0.801369 | 9.300005e-49 | -8.615850e-47 |
| Msa0833890 | Msa1029870 | 0.804457 | 2.140162e-49 | -8.615850e-47 |
| Msa0833890 | Msa1114780 | 0.829580 | 4.753355e-55 | -8.615850e-47 |
| Msa0833890 | Msa1337310 | 0.801718 | 7.890534e-49 | -8.615850e-47 |
| Msa0833890 | Msa1360420 | 0.842757 | 2.127984e-58 | -8.615850e-47 |
| Msa0833890 | Msa1388090 | 0.993660 | 2.670229e-201 | -8.615850e-47 |
| Msa0833890 | Msa1424630 | 0.802095 | 6.599765e-49 | -8.615850e-47 |
| Msa0501410 | Msa0833890 | 0.812888 | 3.380324e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833890 | MtrunA17_Chr5g0399641 | 97.445 | 548 | 12 | 2 | 1 | 546 | 1 | 548 | 0.0 | 1106 |
| Msa0833890 | MtrunA17_Chr4g0055691 | 65.766 | 555 | 137 | 9 | 6 | 544 | 4 | 521 | 0.0 | 717 |
| Msa0833890 | MtrunA17_Chr7g0250561 | 46.907 | 388 | 178 | 8 | 129 | 492 | 65 | 448 | 2.65e-119 | 359 |
| Msa0833890 | MtrunA17_Chr7g0250611 | 45.553 | 371 | 167 | 9 | 133 | 492 | 75 | 421 | 4.77e-109 | 332 |
| Msa0833890 | MtrunA17_Chr4g0039301 | 38.281 | 384 | 201 | 7 | 128 | 493 | 95 | 460 | 1.75e-84 | 272 |
| Msa0833890 | MtrunA17_Chr7g0260671 | 39.474 | 380 | 195 | 11 | 133 | 493 | 74 | 437 | 1.49e-80 | 261 |
| Msa0833890 | MtrunA17_Chr7g0260681 | 39.394 | 363 | 185 | 12 | 133 | 476 | 74 | 420 | 1.76e-76 | 248 |
| Msa0833890 | MtrunA17_Chr2g0283561 | 35.156 | 384 | 192 | 9 | 133 | 493 | 39 | 388 | 1.32e-63 | 214 |
| Msa0833890 | MtrunA17_Chr7g0214711 | 32.683 | 410 | 215 | 13 | 109 | 500 | 80 | 446 | 2.58e-57 | 199 |
| Msa0833890 | MtrunA17_Chr4g0046001 | 33.075 | 387 | 195 | 11 | 133 | 495 | 13 | 359 | 4.84e-52 | 182 |
| Msa0833890 | MtrunA17_Chr4g0046011 | 33.333 | 387 | 194 | 12 | 133 | 495 | 4 | 350 | 2.55e-51 | 180 |
| Msa0833890 | MtrunA17_Chr4g0041311 | 29.250 | 400 | 217 | 10 | 129 | 493 | 24 | 392 | 5.51e-49 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833890 | AT4G16820.1 | 55.179 | 531 | 198 | 10 | 25 | 546 | 18 | 517 | 0.0 | 560 |
| Msa0833890 | AT2G44810.2 | 50.136 | 369 | 170 | 7 | 133 | 494 | 86 | 447 | 4.61e-123 | 369 |
| Msa0833890 | AT2G44810.1 | 50.413 | 363 | 166 | 7 | 139 | 494 | 2 | 357 | 1.25e-120 | 360 |
| Msa0833890 | AT1G30370.1 | 38.015 | 413 | 219 | 10 | 124 | 517 | 105 | 499 | 2.57e-86 | 277 |
| Msa0833890 | AT1G51440.1 | 41.463 | 369 | 172 | 10 | 137 | 481 | 91 | 439 | 1.97e-83 | 269 |
| Msa0833890 | AT1G06800.1 | 39.633 | 381 | 187 | 10 | 137 | 493 | 89 | 450 | 4.17e-79 | 258 |
| Msa0833890 | AT2G30550.1 | 39.227 | 362 | 186 | 7 | 137 | 479 | 105 | 451 | 7.44e-79 | 255 |
| Msa0833890 | AT1G06800.2 | 40.385 | 364 | 174 | 10 | 137 | 476 | 89 | 433 | 9.98e-79 | 254 |
| Msa0833890 | AT2G30550.2 | 38.830 | 376 | 196 | 8 | 137 | 493 | 105 | 465 | 6.53e-78 | 255 |
| Msa0833890 | AT2G31690.1 | 35.813 | 363 | 184 | 11 | 133 | 475 | 88 | 421 | 4.64e-65 | 220 |
| Msa0833890 | AT1G05800.1 | 35.833 | 360 | 185 | 9 | 133 | 475 | 80 | 410 | 6.84e-64 | 216 |
| Msa0833890 | AT4G18550.1 | 32.771 | 415 | 211 | 11 | 133 | 515 | 19 | 397 | 3.62e-59 | 202 |
| Msa0833890 | AT4G18550.2 | 32.771 | 415 | 211 | 11 | 133 | 515 | 36 | 414 | 4.94e-59 | 202 |
| Msa0833890 | AT1G06250.1 | 31.959 | 388 | 200 | 10 | 133 | 493 | 5 | 355 | 5.59e-54 | 189 |
| Msa0833890 | AT2G42690.1 | 32.468 | 385 | 204 | 8 | 137 | 493 | 8 | 364 | 2.86e-51 | 181 |
| Msa0833890 | AT4G18550.3 | 36.458 | 288 | 152 | 8 | 133 | 397 | 36 | 315 | 9.28e-46 | 164 |
| Msa0833890 | AT1G06250.2 | 30.797 | 276 | 140 | 7 | 234 | 493 | 1 | 241 | 4.80e-32 | 125 |
Find 134 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAATTGGATTACCTAAA+TGG | 0.127660 | 5_4:+7005877 | Msa0833890:CDS |
| CCTCGGGTAAATCGACTAAT+TGG | 0.206931 | 5_4:-7006070 | None:intergenic |
| GAAGACGCTGTAAGCGTTTC+AGG | 0.238955 | 5_4:-7005590 | None:intergenic |
| TAACCTAGATGAGTTGTTAT+TGG | 0.251262 | 5_4:-7005379 | None:intergenic |
| CTCTTAGCATTAGCTCTAAA+TGG | 0.258178 | 5_4:-7006698 | None:intergenic |
| CGCCTTTGTAAAGTTCAATA+AGG | 0.276950 | 5_4:-7006223 | None:intergenic |
| AAAAGATGAAGGTTGTTTAA+TGG | 0.278707 | 5_4:-7005343 | None:intergenic |
| TTTCTCCCGATGATATTTCT+TGG | 0.282496 | 5_4:-7005636 | None:intergenic |
| AGAGGCTTATTTACATTTAG+TGG | 0.289753 | 5_4:+7006652 | Msa0833890:CDS |
| ATGATGATTCCAAAGGCTTT+TGG | 0.306541 | 5_4:-7005434 | None:intergenic |
| GCCACCTCATCAACCCATTT+AGG | 0.326253 | 5_4:-7005891 | None:intergenic |
| GTTGTATTGGTTGTTGAAAC+TGG | 0.332759 | 5_4:-7005464 | None:intergenic |
| ACTCAACTTTGGGCTTTGAT+TGG | 0.339758 | 5_4:-7006121 | None:intergenic |
| ACAGCCACGGGTGGCACGTT+TGG | 0.344135 | 5_4:-7006329 | None:intergenic |
| TAATTTCCTCGGCCACCAAT+AGG | 0.366166 | 5_4:-7006295 | None:intergenic |
| CGGCGAGAGGTTGTTAGATA+TGG | 0.368122 | 5_4:+7005723 | Msa0833890:CDS |
| CATAAATCCACACTCAACTT+TGG | 0.371336 | 5_4:-7006132 | None:intergenic |
| CTGTAAGCGTTTCAGGTGGC+GGG | 0.378709 | 5_4:-7005583 | None:intergenic |
| TCTTCAGCTGCTTTAATCTC+TGG | 0.381476 | 5_4:-7005552 | None:intergenic |
| AACTTCCACTTGTCTTGAAT+GGG | 0.386150 | 5_4:+7006031 | Msa0833890:CDS |
| GTTGGAAGAGAACACTCCTT+TGG | 0.394244 | 5_4:+7006538 | Msa0833890:CDS |
| CGTGTTGGTAACAGAGCCTT+TGG | 0.394565 | 5_4:+7006371 | Msa0833890:CDS |
| TAAAAGAGAGATTGCAAGAA+TGG | 0.395214 | 5_4:+7005977 | Msa0833890:CDS |
| ATAAATCCACACTCAACTTT+GGG | 0.396883 | 5_4:-7006131 | None:intergenic |
| TCTTGATAGCCAAAAGCCTT+TGG | 0.405866 | 5_4:+7005425 | Msa0833890:CDS |
| GGATGACCCAGCGTTCTAGC+TGG | 0.407435 | 5_4:+7005928 | Msa0833890:CDS |
| ATCAATTGGATTACCTAAAT+GGG | 0.408997 | 5_4:+7005878 | Msa0833890:CDS |
| GGTTGTTAGATATGGTGATT+TGG | 0.409569 | 5_4:+7005731 | Msa0833890:CDS |
| GAACTTCCACTTGTCTTGAA+TGG | 0.412888 | 5_4:+7006030 | Msa0833890:CDS |
| GACTTAACCTAGCAAAACTA+TGG | 0.417487 | 5_4:+7005529 | Msa0833890:CDS |
| CTGTATGCCACATCATCAAT+TGG | 0.418121 | 5_4:+7005864 | Msa0833890:CDS |
| AATTTCCTCGGCCACCAATA+GGG | 0.421437 | 5_4:-7006294 | None:intergenic |
| ATGAGCTTGTACAAGACAAA+AGG | 0.423174 | 5_4:+7006152 | Msa0833890:CDS |
| TTGGAAGAGAACACTCCTTT+GGG | 0.425192 | 5_4:+7006539 | Msa0833890:CDS |
| GAATTAAGCATAACCGTTAC+CGG | 0.425326 | 5_4:+7006248 | Msa0833890:CDS |
| AAGAATTCCAAGGTTGTTAG+TGG | 0.426321 | 5_4:+7006503 | Msa0833890:CDS |
| ACATTTAGTGGATGGATACA+TGG | 0.441165 | 5_4:+7006664 | Msa0833890:CDS |
| AAACCAATAACAACTCATCT+AGG | 0.443716 | 5_4:+7005376 | Msa0833890:CDS |
| AATATCATGGCAGCAACGAC+TGG | 0.446528 | 5_4:+7005667 | Msa0833890:CDS |
| GATGAGGTGGCACCAGATCT+TGG | 0.447657 | 5_4:+7005903 | Msa0833890:CDS |
| CCCGCACGTGCTAATTTCCT+CGG | 0.448005 | 5_4:-7006306 | None:intergenic |
| TAGACAGGGATCCATGTCTA+TGG | 0.450095 | 5_4:+7006838 | Msa0833890:CDS |
| GTTGTTTAATGGAAGAAGAA+TGG | 0.450283 | 5_4:-7005332 | None:intergenic |
| CACTTCTTCAACAACGGACT+CGG | 0.454486 | 5_4:-7006195 | None:intergenic |
| GTGAAGGTTGTGAGCAGGTA+AGG | 0.457213 | 5_4:-7005274 | None:intergenic |
| GTAAGCGTTTCAGGTGGCGG+GGG | 0.458362 | 5_4:-7005581 | None:intergenic |
| CTTGTCTAATCTTAGTAGAC+AGG | 0.459042 | 5_4:+7006823 | Msa0833890:CDS |
| CTAGTGTCGCGCCAAGGCTA+TGG | 0.467757 | 5_4:-7006271 | None:intergenic |
| GCTGTAAGCGTTTCAGGTGG+CGG | 0.475077 | 5_4:-7005584 | None:intergenic |
| GTCTGAGTCTGAGCGTCCTC+GGG | 0.477426 | 5_4:-7006086 | None:intergenic |
| TCGCCGGAGGTTGTCATCCA+AGG | 0.480124 | 5_4:-7005706 | None:intergenic |
| GAAGGGGATGTTAGATCCCT+TGG | 0.480349 | 5_4:+7005689 | Msa0833890:CDS |
| TGGGTCATCCAACCAAGATC+TGG | 0.480411 | 5_4:-7005915 | None:intergenic |
| TGAAGAGAAGCAAAAGATGA+AGG | 0.480894 | 5_4:-7005354 | None:intergenic |
| GCTTCAGTTGTTGACATGGC+AGG | 0.485069 | 5_4:-7005786 | None:intergenic |
| TGGAGAATACTCCGCCGTCT+TGG | 0.486287 | 5_4:-7005616 | None:intergenic |
| TATTGGTTGTTGAAACTGGT+TGG | 0.487668 | 5_4:-7005460 | None:intergenic |
| AGTCTGAGTCTGAGCGTCCT+CGG | 0.490474 | 5_4:-7006087 | None:intergenic |
| AAAAGAGAGATTGCAAGAAT+GGG | 0.490721 | 5_4:+7005978 | Msa0833890:CDS |
| ACACACAAGACGTGATTACA+AGG | 0.492272 | 5_4:+7006438 | Msa0833890:CDS |
| CTCGGGTAAATCGACTAATT+GGG | 0.499666 | 5_4:-7006069 | None:intergenic |
| AACAACTCCACTAACAACCT+TGG | 0.499945 | 5_4:-7006510 | None:intergenic |
| ACAAGGACACCTCTTGATGA+TGG | 0.502751 | 5_4:-7005812 | None:intergenic |
| TGAGCTTGTACAAGACAAAA+GGG | 0.503559 | 5_4:+7006153 | Msa0833890:CDS |
| CCTTTGGGATATTCACATGT+TGG | 0.504000 | 5_4:+7006554 | Msa0833890:CDS |
| GAAATATCATCGGGAGAAAG+TGG | 0.505201 | 5_4:+7005640 | Msa0833890:CDS |
| CTTCAACAACGGACTCGGAT+AGG | 0.508893 | 5_4:-7006190 | None:intergenic |
| TCAGCATCGGGCTTCAAGTA+AGG | 0.510052 | 5_4:-7006608 | None:intergenic |
| CAACAAGCTATGTCAGCATC+GGG | 0.515189 | 5_4:-7006620 | None:intergenic |
| GCTTATTTACATTTAGTGGA+TGG | 0.516513 | 5_4:+7006656 | Msa0833890:CDS |
| GATGACCCAGCGTTCTAGCT+GGG | 0.518537 | 5_4:+7005929 | Msa0833890:CDS |
| GAAGAATGGCATCTGAAACT+AGG | 0.523536 | 5_4:-7005318 | None:intergenic |
| CAAGGACACCTCTTGATGAT+GGG | 0.525696 | 5_4:-7005811 | None:intergenic |
| TCATCAAGAGGTGTCCTTGT+CGG | 0.525857 | 5_4:+7005815 | Msa0833890:CDS |
| TTGTATACTAGTAAGGCTAA+AGG | 0.526986 | 5_4:+7006767 | Msa0833890:CDS |
| ATCCCTTGGATGACAACCTC+CGG | 0.528647 | 5_4:+7005703 | Msa0833890:CDS |
| ATCCAACCCAGCTAGAACGC+TGG | 0.529696 | 5_4:-7005935 | None:intergenic |
| GACGTGATTACAAGGGTGCC+AGG | 0.535150 | 5_4:+7006446 | Msa0833890:CDS |
| CGCGACACTAGCCCTATTGG+TGG | 0.536052 | 5_4:+7006283 | Msa0833890:CDS |
| TAGTGGAGTTGTTGATATGT+TGG | 0.537325 | 5_4:+7006520 | Msa0833890:CDS |
| TGTAAGCGTTTCAGGTGGCG+GGG | 0.538613 | 5_4:-7005582 | None:intergenic |
| ACCGTTACCGGCCATAGCCT+TGG | 0.539736 | 5_4:+7006260 | Msa0833890:CDS |
| ATGGCAGCAACGACTGGAAG+GGG | 0.541567 | 5_4:+7005673 | Msa0833890:CDS |
| ACCTAAATGGGTTGATGAGG+TGG | 0.548455 | 5_4:+7005890 | Msa0833890:CDS |
| ACTAGCCCTATTGGTGGCCG+AGG | 0.548502 | 5_4:+7006289 | Msa0833890:CDS |
| ATTCATGAAGATGATGGACT+AGG | 0.548753 | 5_4:-7006872 | None:intergenic |
| AGGTAATCCAATTGATGATG+TGG | 0.548802 | 5_4:-7005871 | None:intergenic |
| GATATTGTGATATCTCTTCG+TGG | 0.549518 | 5_4:+7006008 | Msa0833890:CDS |
| TTCAGCCCATTCAAGACAAG+TGG | 0.553127 | 5_4:-7006036 | None:intergenic |
| GGACGCTCAGACTCAGACTC+AGG | 0.556991 | 5_4:+7006091 | Msa0833890:CDS |
| CGCCGGAGGTTGTCATCCAA+GGG | 0.557417 | 5_4:-7005705 | None:intergenic |
| ACAACAAGCTATGTCAGCAT+CGG | 0.563181 | 5_4:-7006621 | None:intergenic |
| TCATGGCAGCAACGACTGGA+AGG | 0.564182 | 5_4:+7005671 | Msa0833890:CDS |
| CGCCTTATTGAACTTTACAA+AGG | 0.564214 | 5_4:+7006221 | Msa0833890:CDS |
| ATTCTCCAAGAAATATCATC+GGG | 0.566867 | 5_4:+7005631 | Msa0833890:CDS |
| AGCTTGTTGTCATGATCTAG+AGG | 0.571065 | 5_4:+7006634 | Msa0833890:CDS |
| TGATGTGGCATACAGACTCT+TGG | 0.573169 | 5_4:-7005856 | None:intergenic |
| TAAGCGTTTCAGGTGGCGGG+GGG | 0.576225 | 5_4:-7005580 | None:intergenic |
| GGGTGCTTCAGTTGTTGACA+TGG | 0.576279 | 5_4:-7005790 | None:intergenic |
| CCGAGGAAATTAGCACGTGC+GGG | 0.576932 | 5_4:+7006306 | Msa0833890:CDS |
| TCATTTGGCGGACCTCGTGT+TGG | 0.577348 | 5_4:+7006356 | Msa0833890:CDS |
| CATATCTAACAACCTCTCGC+CGG | 0.581786 | 5_4:-7005722 | None:intergenic |
| CATGGCAGCAACGACTGGAA+GGG | 0.583943 | 5_4:+7005672 | Msa0833890:CDS |
| AATTTGTGAAGGTTGTGAGC+AGG | 0.587076 | 5_4:-7005279 | None:intergenic |
| GCCAAGGCTATGGCCGGTAA+CGG | 0.591069 | 5_4:-7006261 | None:intergenic |
| TATTCTCCAAGAAATATCAT+CGG | 0.595846 | 5_4:+7005630 | Msa0833890:CDS |
| AGAAAGTGGAGGGAATATCA+TGG | 0.601338 | 5_4:+7005654 | Msa0833890:CDS |
| TTGGTTGATGATGATTCCAA+AGG | 0.613659 | 5_4:-7005441 | None:intergenic |
| AGGTGGCACCAGATCTTGGT+TGG | 0.618491 | 5_4:+7005907 | Msa0833890:CDS |
| GGATGACAACCTCCGGCGAG+AGG | 0.618831 | 5_4:+7005710 | Msa0833890:CDS |
| CAGACTCAGACTCAGGCACA+AGG | 0.619166 | 5_4:+7006098 | Msa0833890:CDS |
| TTAGTGCTTGAAATTTGTGA+AGG | 0.626013 | 5_4:-7005290 | None:intergenic |
| TCAAAGCCCAAAGTTGAGTG+TGG | 0.627127 | 5_4:+7006125 | Msa0833890:CDS |
| ACAACAAGCAGCCATAGACA+TGG | 0.628855 | 5_4:-7006849 | None:intergenic |
| GCGTCGCACTTCTTCAACAA+CGG | 0.630718 | 5_4:-7006201 | None:intergenic |
| TTGTCTAATCTTAGTAGACA+GGG | 0.632883 | 5_4:+7006824 | Msa0833890:CDS |
| ATCTAACAACCTCTCGCCGG+AGG | 0.634684 | 5_4:-7005719 | None:intergenic |
| TGAAGCACCCCATCATCAAG+AGG | 0.635362 | 5_4:+7005803 | Msa0833890:CDS |
| AAGGACACCTCTTGATGATG+GGG | 0.638913 | 5_4:-7005810 | None:intergenic |
| TGTCGCGCCAAGGCTATGGC+CGG | 0.642253 | 5_4:-7006267 | None:intergenic |
| ACAGCGTCTTCTTTCCAAGA+CGG | 0.643880 | 5_4:+7005602 | Msa0833890:CDS |
| TCTGTTAATCTTAATAGACA+AGG | 0.646433 | 5_4:+7006794 | Msa0833890:CDS |
| TATCATCGGGAGAAAGTGGA+GGG | 0.648802 | 5_4:+7005644 | Msa0833890:CDS |
| ATTACCTAAATGGGTTGATG+AGG | 0.663925 | 5_4:+7005887 | Msa0833890:CDS |
| ATATCATCGGGAGAAAGTGG+AGG | 0.666029 | 5_4:+7005643 | Msa0833890:CDS |
| ATAGGGCTAGTGTCGCGCCA+AGG | 0.667674 | 5_4:-7006277 | None:intergenic |
| CCAATTAGTCGATTTACCCG+AGG | 0.667868 | 5_4:+7006070 | Msa0833890:CDS |
| GACGCTGTAAGCGTTTCAGG+TGG | 0.674999 | 5_4:-7005587 | None:intergenic |
| TTTATAAGATCTCTCCGACA+AGG | 0.680022 | 5_4:-7005829 | None:intergenic |
| GCGTCTTCTTTCCAAGACGG+CGG | 0.680773 | 5_4:+7005605 | Msa0833890:CDS |
| CCAACATGTGAATATCCCAA+AGG | 0.681313 | 5_4:-7006554 | None:intergenic |
| GAGCTTGTACAAGACAAAAG+GGG | 0.708452 | 5_4:+7006154 | Msa0833890:CDS |
| CACACAAGACGTGATTACAA+GGG | 0.729372 | 5_4:+7006439 | Msa0833890:CDS |
| AAGGCTCTGTTACCAACACG+AGG | 0.743509 | 5_4:-7006368 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAATTAAGAATTCCA+AGG | + | chr5_4:7006493-7006512 | Msa0833890:CDS | 20.0% |
| !! | AAAAAAGTTGTATACTAGTA+AGG | + | chr5_4:7006760-7006779 | Msa0833890:CDS | 20.0% |
| !! | AGAAAAAATTAAGAATTCCA+AGG | + | chr5_4:7006493-7006512 | Msa0833890:CDS | 20.0% |
| !! | AAAAAAGTTGTATACTAGTA+AGG | + | chr5_4:7006760-7006779 | Msa0833890:CDS | 20.0% |
| ! | AAAAGATGAAGGTTGTTTAA+TGG | - | chr5_4:7005346-7005365 | None:intergenic | 25.0% |
| !!! | TTTTTGTCACTTTTTTGGAT+AGG | - | chr5_4:7005489-7005508 | None:intergenic | 25.0% |
| ! | ATCCAAAAAAGTGACAAAAA+AGG | + | chr5_4:7005489-7005508 | Msa0833890:CDS | 25.0% |
| !!! | TTCCTTTTTTGTCACTTTTT+TGG | - | chr5_4:7005494-7005513 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAACTTTCTTGA+AGG | + | chr5_4:7005507-7005526 | Msa0833890:CDS | 25.0% |
| ! | TATTCTCCAAGAAATATCAT+CGG | + | chr5_4:7005630-7005649 | Msa0833890:CDS | 25.0% |
| ! | ATCAATTGGATTACCTAAAT+GGG | + | chr5_4:7005878-7005897 | Msa0833890:CDS | 25.0% |
| ! | TCTGTTAATCTTAATAGACA+AGG | + | chr5_4:7006794-7006813 | Msa0833890:CDS | 25.0% |
| ! | AAAAGATGAAGGTTGTTTAA+TGG | - | chr5_4:7005346-7005365 | None:intergenic | 25.0% |
| !!! | TTTTTGTCACTTTTTTGGAT+AGG | - | chr5_4:7005489-7005508 | None:intergenic | 25.0% |
| ! | ATCCAAAAAAGTGACAAAAA+AGG | + | chr5_4:7005489-7005508 | Msa0833890:CDS | 25.0% |
| !!! | TTCCTTTTTTGTCACTTTTT+TGG | - | chr5_4:7005494-7005513 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAACTTTCTTGA+AGG | + | chr5_4:7005507-7005526 | Msa0833890:CDS | 25.0% |
| ! | TATTCTCCAAGAAATATCAT+CGG | + | chr5_4:7005630-7005649 | Msa0833890:CDS | 25.0% |
| ! | ATCAATTGGATTACCTAAAT+GGG | + | chr5_4:7005878-7005897 | Msa0833890:CDS | 25.0% |
| ! | TCTGTTAATCTTAATAGACA+AGG | + | chr5_4:7006794-7006813 | Msa0833890:CDS | 25.0% |
| TTAGTGCTTGAAATTTGTGA+AGG | - | chr5_4:7005293-7005312 | None:intergenic | 30.0% | |
| GTTGTTTAATGGAAGAAGAA+TGG | - | chr5_4:7005335-7005354 | None:intergenic | 30.0% | |
| AAACCAATAACAACTCATCT+AGG | + | chr5_4:7005376-7005395 | Msa0833890:CDS | 30.0% | |
| TAACCTAGATGAGTTGTTAT+TGG | - | chr5_4:7005382-7005401 | None:intergenic | 30.0% | |
| !!! | CTTTTTTGGATAGGTTGTAT+TGG | - | chr5_4:7005480-7005499 | None:intergenic | 30.0% |
| ATTCTCCAAGAAATATCATC+GGG | + | chr5_4:7005631-7005650 | Msa0833890:CDS | 30.0% | |
| CATCAATTGGATTACCTAAA+TGG | + | chr5_4:7005877-7005896 | Msa0833890:CDS | 30.0% | |
| TAAAAGAGAGATTGCAAGAA+TGG | + | chr5_4:7005977-7005996 | Msa0833890:CDS | 30.0% | |
| AAAAGAGAGATTGCAAGAAT+GGG | + | chr5_4:7005978-7005997 | Msa0833890:CDS | 30.0% | |
| ATAAATCCACACTCAACTTT+GGG | - | chr5_4:7006134-7006153 | None:intergenic | 30.0% | |
| AGAGGCTTATTTACATTTAG+TGG | + | chr5_4:7006652-7006671 | Msa0833890:CDS | 30.0% | |
| GCTTATTTACATTTAGTGGA+TGG | + | chr5_4:7006656-7006675 | Msa0833890:CDS | 30.0% | |
| TTGTATACTAGTAAGGCTAA+AGG | + | chr5_4:7006767-7006786 | Msa0833890:CDS | 30.0% | |
| TTGTCTAATCTTAGTAGACA+GGG | + | chr5_4:7006824-7006843 | Msa0833890:CDS | 30.0% | |
| TTAGTGCTTGAAATTTGTGA+AGG | - | chr5_4:7005293-7005312 | None:intergenic | 30.0% | |
| GTTGTTTAATGGAAGAAGAA+TGG | - | chr5_4:7005335-7005354 | None:intergenic | 30.0% | |
| AAACCAATAACAACTCATCT+AGG | + | chr5_4:7005376-7005395 | Msa0833890:CDS | 30.0% | |
| TAACCTAGATGAGTTGTTAT+TGG | - | chr5_4:7005382-7005401 | None:intergenic | 30.0% | |
| !!! | CTTTTTTGGATAGGTTGTAT+TGG | - | chr5_4:7005480-7005499 | None:intergenic | 30.0% |
| ATTCTCCAAGAAATATCATC+GGG | + | chr5_4:7005631-7005650 | Msa0833890:CDS | 30.0% | |
| CATCAATTGGATTACCTAAA+TGG | + | chr5_4:7005877-7005896 | Msa0833890:CDS | 30.0% | |
| TAAAAGAGAGATTGCAAGAA+TGG | + | chr5_4:7005977-7005996 | Msa0833890:CDS | 30.0% | |
| AAAAGAGAGATTGCAAGAAT+GGG | + | chr5_4:7005978-7005997 | Msa0833890:CDS | 30.0% | |
| ATAAATCCACACTCAACTTT+GGG | - | chr5_4:7006134-7006153 | None:intergenic | 30.0% | |
| AGAGGCTTATTTACATTTAG+TGG | + | chr5_4:7006652-7006671 | Msa0833890:CDS | 30.0% | |
| GCTTATTTACATTTAGTGGA+TGG | + | chr5_4:7006656-7006675 | Msa0833890:CDS | 30.0% | |
| TTGTATACTAGTAAGGCTAA+AGG | + | chr5_4:7006767-7006786 | Msa0833890:CDS | 30.0% | |
| TTGTCTAATCTTAGTAGACA+GGG | + | chr5_4:7006824-7006843 | Msa0833890:CDS | 30.0% | |
| TGAAGAGAAGCAAAAGATGA+AGG | - | chr5_4:7005357-7005376 | None:intergenic | 35.0% | |
| ! | ATGATGATTCCAAAGGCTTT+TGG | - | chr5_4:7005437-7005456 | None:intergenic | 35.0% |
| !! | TTGGTTGATGATGATTCCAA+AGG | - | chr5_4:7005444-7005463 | None:intergenic | 35.0% |
| ! | TATTGGTTGTTGAAACTGGT+TGG | - | chr5_4:7005463-7005482 | None:intergenic | 35.0% |
| !! | GTTGTATTGGTTGTTGAAAC+TGG | - | chr5_4:7005467-7005486 | None:intergenic | 35.0% |
| GACTTAACCTAGCAAAACTA+TGG | + | chr5_4:7005529-7005548 | Msa0833890:CDS | 35.0% | |
| TTTCTCCCGATGATATTTCT+TGG | - | chr5_4:7005639-7005658 | None:intergenic | 35.0% | |
| GGTTGTTAGATATGGTGATT+TGG | + | chr5_4:7005731-7005750 | Msa0833890:CDS | 35.0% | |
| TTTATAAGATCTCTCCGACA+AGG | - | chr5_4:7005832-7005851 | None:intergenic | 35.0% | |
| !! | AGGTAATCCAATTGATGATG+TGG | - | chr5_4:7005874-7005893 | None:intergenic | 35.0% |
| !! | ATTACCTAAATGGGTTGATG+AGG | + | chr5_4:7005887-7005906 | Msa0833890:CDS | 35.0% |
| GATATTGTGATATCTCTTCG+TGG | + | chr5_4:7006008-7006027 | Msa0833890:CDS | 35.0% | |
| AACTTCCACTTGTCTTGAAT+GGG | + | chr5_4:7006031-7006050 | Msa0833890:CDS | 35.0% | |
| CATAAATCCACACTCAACTT+TGG | - | chr5_4:7006135-7006154 | None:intergenic | 35.0% | |
| ATGAGCTTGTACAAGACAAA+AGG | + | chr5_4:7006152-7006171 | Msa0833890:CDS | 35.0% | |
| TGAGCTTGTACAAGACAAAA+GGG | + | chr5_4:7006153-7006172 | Msa0833890:CDS | 35.0% | |
| ! | CGCCTTATTGAACTTTACAA+AGG | + | chr5_4:7006221-7006240 | Msa0833890:CDS | 35.0% |
| CGCCTTTGTAAAGTTCAATA+AGG | - | chr5_4:7006226-7006245 | None:intergenic | 35.0% | |
| GAATTAAGCATAACCGTTAC+CGG | + | chr5_4:7006248-7006267 | Msa0833890:CDS | 35.0% | |
| !! | CTTTTCAAGATGTTCTCCAA+AGG | - | chr5_4:7006390-7006409 | None:intergenic | 35.0% |
| TCCTCGCTTAAAAATATTCC+TGG | - | chr5_4:7006467-7006486 | None:intergenic | 35.0% | |
| AAGAATTCCAAGGTTGTTAG+TGG | + | chr5_4:7006503-7006522 | Msa0833890:CDS | 35.0% | |
| TAGTGGAGTTGTTGATATGT+TGG | + | chr5_4:7006520-7006539 | Msa0833890:CDS | 35.0% | |
| ! | ACATTTAGTGGATGGATACA+TGG | + | chr5_4:7006664-7006683 | Msa0833890:CDS | 35.0% |
| !! | CTCTTAGCATTAGCTCTAAA+TGG | - | chr5_4:7006701-7006720 | None:intergenic | 35.0% |
| CTTGTCTAATCTTAGTAGAC+AGG | + | chr5_4:7006823-7006842 | Msa0833890:CDS | 35.0% | |
| TGAAGAGAAGCAAAAGATGA+AGG | - | chr5_4:7005357-7005376 | None:intergenic | 35.0% | |
| ! | ATGATGATTCCAAAGGCTTT+TGG | - | chr5_4:7005437-7005456 | None:intergenic | 35.0% |
| !! | TTGGTTGATGATGATTCCAA+AGG | - | chr5_4:7005444-7005463 | None:intergenic | 35.0% |
| ! | TATTGGTTGTTGAAACTGGT+TGG | - | chr5_4:7005463-7005482 | None:intergenic | 35.0% |
| !! | GTTGTATTGGTTGTTGAAAC+TGG | - | chr5_4:7005467-7005486 | None:intergenic | 35.0% |
| GACTTAACCTAGCAAAACTA+TGG | + | chr5_4:7005529-7005548 | Msa0833890:CDS | 35.0% | |
| TTTCTCCCGATGATATTTCT+TGG | - | chr5_4:7005639-7005658 | None:intergenic | 35.0% | |
| GGTTGTTAGATATGGTGATT+TGG | + | chr5_4:7005731-7005750 | Msa0833890:CDS | 35.0% | |
| TTTATAAGATCTCTCCGACA+AGG | - | chr5_4:7005832-7005851 | None:intergenic | 35.0% | |
| !! | AGGTAATCCAATTGATGATG+TGG | - | chr5_4:7005874-7005893 | None:intergenic | 35.0% |
| !! | ATTACCTAAATGGGTTGATG+AGG | + | chr5_4:7005887-7005906 | Msa0833890:CDS | 35.0% |
| GATATTGTGATATCTCTTCG+TGG | + | chr5_4:7006008-7006027 | Msa0833890:CDS | 35.0% | |
| AACTTCCACTTGTCTTGAAT+GGG | + | chr5_4:7006031-7006050 | Msa0833890:CDS | 35.0% | |
| CATAAATCCACACTCAACTT+TGG | - | chr5_4:7006135-7006154 | None:intergenic | 35.0% | |
| ATGAGCTTGTACAAGACAAA+AGG | + | chr5_4:7006152-7006171 | Msa0833890:CDS | 35.0% | |
| TGAGCTTGTACAAGACAAAA+GGG | + | chr5_4:7006153-7006172 | Msa0833890:CDS | 35.0% | |
| ! | CGCCTTATTGAACTTTACAA+AGG | + | chr5_4:7006221-7006240 | Msa0833890:CDS | 35.0% |
| CGCCTTTGTAAAGTTCAATA+AGG | - | chr5_4:7006226-7006245 | None:intergenic | 35.0% | |
| GAATTAAGCATAACCGTTAC+CGG | + | chr5_4:7006248-7006267 | Msa0833890:CDS | 35.0% | |
| !! | CTTTTCAAGATGTTCTCCAA+AGG | - | chr5_4:7006390-7006409 | None:intergenic | 35.0% |
| TCCTCGCTTAAAAATATTCC+TGG | - | chr5_4:7006467-7006486 | None:intergenic | 35.0% | |
| AAGAATTCCAAGGTTGTTAG+TGG | + | chr5_4:7006503-7006522 | Msa0833890:CDS | 35.0% | |
| TAGTGGAGTTGTTGATATGT+TGG | + | chr5_4:7006520-7006539 | Msa0833890:CDS | 35.0% | |
| ! | ACATTTAGTGGATGGATACA+TGG | + | chr5_4:7006664-7006683 | Msa0833890:CDS | 35.0% |
| !! | CTCTTAGCATTAGCTCTAAA+TGG | - | chr5_4:7006701-7006720 | None:intergenic | 35.0% |
| CTTGTCTAATCTTAGTAGAC+AGG | + | chr5_4:7006823-7006842 | Msa0833890:CDS | 35.0% | |
| AATTTGTGAAGGTTGTGAGC+AGG | - | chr5_4:7005282-7005301 | None:intergenic | 40.0% | |
| ! | GAAGAATGGCATCTGAAACT+AGG | - | chr5_4:7005321-7005340 | None:intergenic | 40.0% |
| ! | TCTTGATAGCCAAAAGCCTT+TGG | + | chr5_4:7005425-7005444 | Msa0833890:CDS | 40.0% |
| ! | TCTTCAGCTGCTTTAATCTC+TGG | - | chr5_4:7005555-7005574 | None:intergenic | 40.0% |
| GAAATATCATCGGGAGAAAG+TGG | + | chr5_4:7005640-7005659 | Msa0833890:CDS | 40.0% | |
| AGAAAGTGGAGGGAATATCA+TGG | + | chr5_4:7005654-7005673 | Msa0833890:CDS | 40.0% | |
| CTGTATGCCACATCATCAAT+TGG | + | chr5_4:7005864-7005883 | Msa0833890:CDS | 40.0% | |
| GAACTTCCACTTGTCTTGAA+TGG | + | chr5_4:7006030-7006049 | Msa0833890:CDS | 40.0% | |
| CTCGGGTAAATCGACTAATT+GGG | - | chr5_4:7006072-7006091 | None:intergenic | 40.0% | |
| ! | ACTCAACTTTGGGCTTTGAT+TGG | - | chr5_4:7006124-7006143 | None:intergenic | 40.0% |
| GAGCTTGTACAAGACAAAAG+GGG | + | chr5_4:7006154-7006173 | Msa0833890:CDS | 40.0% | |
| CCAAATGAAAAAACAGCCAC+GGG | - | chr5_4:7006344-7006363 | None:intergenic | 40.0% | |
| GCCAAATGAAAAAACAGCCA+CGG | - | chr5_4:7006345-7006364 | None:intergenic | 40.0% | |
| !!! | GTGGCTGTTTTTTCATTTGG+CGG | + | chr5_4:7006344-7006363 | Msa0833890:CDS | 40.0% |
| ACACACAAGACGTGATTACA+AGG | + | chr5_4:7006438-7006457 | Msa0833890:CDS | 40.0% | |
| CACACAAGACGTGATTACAA+GGG | + | chr5_4:7006439-7006458 | Msa0833890:CDS | 40.0% | |
| !! | GCCAGGAATATTTTTAAGCG+AGG | + | chr5_4:7006463-7006482 | Msa0833890:CDS | 40.0% |
| AACAACTCCACTAACAACCT+TGG | - | chr5_4:7006513-7006532 | None:intergenic | 40.0% | |
| TTGGAAGAGAACACTCCTTT+GGG | + | chr5_4:7006539-7006558 | Msa0833890:CDS | 40.0% | |
| CCAACATGTGAATATCCCAA+AGG | - | chr5_4:7006557-7006576 | None:intergenic | 40.0% | |
| !! | CCTTTGGGATATTCACATGT+TGG | + | chr5_4:7006554-7006573 | Msa0833890:CDS | 40.0% |
| ACAACAAGCTATGTCAGCAT+CGG | - | chr5_4:7006624-7006643 | None:intergenic | 40.0% | |
| !! | AGCTTGTTGTCATGATCTAG+AGG | + | chr5_4:7006634-7006653 | Msa0833890:CDS | 40.0% |
| AATTTGTGAAGGTTGTGAGC+AGG | - | chr5_4:7005282-7005301 | None:intergenic | 40.0% | |
| ! | GAAGAATGGCATCTGAAACT+AGG | - | chr5_4:7005321-7005340 | None:intergenic | 40.0% |
| ! | TCTTGATAGCCAAAAGCCTT+TGG | + | chr5_4:7005425-7005444 | Msa0833890:CDS | 40.0% |
| ! | TCTTCAGCTGCTTTAATCTC+TGG | - | chr5_4:7005555-7005574 | None:intergenic | 40.0% |
| GAAATATCATCGGGAGAAAG+TGG | + | chr5_4:7005640-7005659 | Msa0833890:CDS | 40.0% | |
| AGAAAGTGGAGGGAATATCA+TGG | + | chr5_4:7005654-7005673 | Msa0833890:CDS | 40.0% | |
| CTGTATGCCACATCATCAAT+TGG | + | chr5_4:7005864-7005883 | Msa0833890:CDS | 40.0% | |
| GAACTTCCACTTGTCTTGAA+TGG | + | chr5_4:7006030-7006049 | Msa0833890:CDS | 40.0% | |
| CTCGGGTAAATCGACTAATT+GGG | - | chr5_4:7006072-7006091 | None:intergenic | 40.0% | |
| ! | ACTCAACTTTGGGCTTTGAT+TGG | - | chr5_4:7006124-7006143 | None:intergenic | 40.0% |
| GAGCTTGTACAAGACAAAAG+GGG | + | chr5_4:7006154-7006173 | Msa0833890:CDS | 40.0% | |
| CCAAATGAAAAAACAGCCAC+GGG | - | chr5_4:7006344-7006363 | None:intergenic | 40.0% | |
| GCCAAATGAAAAAACAGCCA+CGG | - | chr5_4:7006345-7006364 | None:intergenic | 40.0% | |
| !!! | GTGGCTGTTTTTTCATTTGG+CGG | + | chr5_4:7006344-7006363 | Msa0833890:CDS | 40.0% |
| ACACACAAGACGTGATTACA+AGG | + | chr5_4:7006438-7006457 | Msa0833890:CDS | 40.0% | |
| CACACAAGACGTGATTACAA+GGG | + | chr5_4:7006439-7006458 | Msa0833890:CDS | 40.0% | |
| !! | GCCAGGAATATTTTTAAGCG+AGG | + | chr5_4:7006463-7006482 | Msa0833890:CDS | 40.0% |
| AACAACTCCACTAACAACCT+TGG | - | chr5_4:7006513-7006532 | None:intergenic | 40.0% | |
| TTGGAAGAGAACACTCCTTT+GGG | + | chr5_4:7006539-7006558 | Msa0833890:CDS | 40.0% | |
| CCAACATGTGAATATCCCAA+AGG | - | chr5_4:7006557-7006576 | None:intergenic | 40.0% | |
| !! | CCTTTGGGATATTCACATGT+TGG | + | chr5_4:7006554-7006573 | Msa0833890:CDS | 40.0% |
| ACAACAAGCTATGTCAGCAT+CGG | - | chr5_4:7006624-7006643 | None:intergenic | 40.0% | |
| !! | AGCTTGTTGTCATGATCTAG+AGG | + | chr5_4:7006634-7006653 | Msa0833890:CDS | 40.0% |
| !! | TCTCTGGCCATAGTTTTGCT+AGG | - | chr5_4:7005539-7005558 | None:intergenic | 45.0% |
| ACAGCGTCTTCTTTCCAAGA+CGG | + | chr5_4:7005602-7005621 | Msa0833890:CDS | 45.0% | |
| ATATCATCGGGAGAAAGTGG+AGG | + | chr5_4:7005643-7005662 | Msa0833890:CDS | 45.0% | |
| TATCATCGGGAGAAAGTGGA+GGG | + | chr5_4:7005644-7005663 | Msa0833890:CDS | 45.0% | |
| AATATCATGGCAGCAACGAC+TGG | + | chr5_4:7005667-7005686 | Msa0833890:CDS | 45.0% | |
| CATATCTAACAACCTCTCGC+CGG | - | chr5_4:7005725-7005744 | None:intergenic | 45.0% | |
| !! | AAGGACACCTCTTGATGATG+GGG | - | chr5_4:7005813-7005832 | None:intergenic | 45.0% |
| ! | CAAGGACACCTCTTGATGAT+GGG | - | chr5_4:7005814-7005833 | None:intergenic | 45.0% |
| ACAAGGACACCTCTTGATGA+TGG | - | chr5_4:7005815-7005834 | None:intergenic | 45.0% | |
| !! | TCATCAAGAGGTGTCCTTGT+CGG | + | chr5_4:7005815-7005834 | Msa0833890:CDS | 45.0% |
| TGATGTGGCATACAGACTCT+TGG | - | chr5_4:7005859-7005878 | None:intergenic | 45.0% | |
| !! | ACCTAAATGGGTTGATGAGG+TGG | + | chr5_4:7005890-7005909 | Msa0833890:CDS | 45.0% |
| TTCAGCCCATTCAAGACAAG+TGG | - | chr5_4:7006039-7006058 | None:intergenic | 45.0% | |
| CCTCGGGTAAATCGACTAAT+TGG | - | chr5_4:7006073-7006092 | None:intergenic | 45.0% | |
| ! | CCAATTAGTCGATTTACCCG+AGG | + | chr5_4:7006070-7006089 | Msa0833890:CDS | 45.0% |
| TCAAAGCCCAAAGTTGAGTG+TGG | + | chr5_4:7006125-7006144 | Msa0833890:CDS | 45.0% | |
| ! | CACTTCTTCAACAACGGACT+CGG | - | chr5_4:7006198-7006217 | None:intergenic | 45.0% |
| AATTTCCTCGGCCACCAATA+GGG | - | chr5_4:7006297-7006316 | None:intergenic | 45.0% | |
| TAATTTCCTCGGCCACCAAT+AGG | - | chr5_4:7006298-7006317 | None:intergenic | 45.0% | |
| AATGAAAAAACAGCCACGGG+TGG | - | chr5_4:7006341-7006360 | None:intergenic | 45.0% | |
| !!! | CCCGTGGCTGTTTTTTCATT+TGG | + | chr5_4:7006341-7006360 | Msa0833890:CDS | 45.0% |
| GTTGGAAGAGAACACTCCTT+TGG | + | chr5_4:7006538-7006557 | Msa0833890:CDS | 45.0% | |
| CAACAAGCTATGTCAGCATC+GGG | - | chr5_4:7006623-7006642 | None:intergenic | 45.0% | |
| TAGACAGGGATCCATGTCTA+TGG | + | chr5_4:7006838-7006857 | Msa0833890:CDS | 45.0% | |
| ACAACAAGCAGCCATAGACA+TGG | - | chr5_4:7006852-7006871 | None:intergenic | 45.0% | |
| !! | TCTCTGGCCATAGTTTTGCT+AGG | - | chr5_4:7005539-7005558 | None:intergenic | 45.0% |
| ACAGCGTCTTCTTTCCAAGA+CGG | + | chr5_4:7005602-7005621 | Msa0833890:CDS | 45.0% | |
| ATATCATCGGGAGAAAGTGG+AGG | + | chr5_4:7005643-7005662 | Msa0833890:CDS | 45.0% | |
| TATCATCGGGAGAAAGTGGA+GGG | + | chr5_4:7005644-7005663 | Msa0833890:CDS | 45.0% | |
| AATATCATGGCAGCAACGAC+TGG | + | chr5_4:7005667-7005686 | Msa0833890:CDS | 45.0% | |
| CATATCTAACAACCTCTCGC+CGG | - | chr5_4:7005725-7005744 | None:intergenic | 45.0% | |
| !! | AAGGACACCTCTTGATGATG+GGG | - | chr5_4:7005813-7005832 | None:intergenic | 45.0% |
| ! | CAAGGACACCTCTTGATGAT+GGG | - | chr5_4:7005814-7005833 | None:intergenic | 45.0% |
| ACAAGGACACCTCTTGATGA+TGG | - | chr5_4:7005815-7005834 | None:intergenic | 45.0% | |
| !! | TCATCAAGAGGTGTCCTTGT+CGG | + | chr5_4:7005815-7005834 | Msa0833890:CDS | 45.0% |
| TGATGTGGCATACAGACTCT+TGG | - | chr5_4:7005859-7005878 | None:intergenic | 45.0% | |
| !! | ACCTAAATGGGTTGATGAGG+TGG | + | chr5_4:7005890-7005909 | Msa0833890:CDS | 45.0% |
| TTCAGCCCATTCAAGACAAG+TGG | - | chr5_4:7006039-7006058 | None:intergenic | 45.0% | |
| CCTCGGGTAAATCGACTAAT+TGG | - | chr5_4:7006073-7006092 | None:intergenic | 45.0% | |
| ! | CCAATTAGTCGATTTACCCG+AGG | + | chr5_4:7006070-7006089 | Msa0833890:CDS | 45.0% |
| TCAAAGCCCAAAGTTGAGTG+TGG | + | chr5_4:7006125-7006144 | Msa0833890:CDS | 45.0% | |
| ! | CACTTCTTCAACAACGGACT+CGG | - | chr5_4:7006198-7006217 | None:intergenic | 45.0% |
| AATTTCCTCGGCCACCAATA+GGG | - | chr5_4:7006297-7006316 | None:intergenic | 45.0% | |
| TAATTTCCTCGGCCACCAAT+AGG | - | chr5_4:7006298-7006317 | None:intergenic | 45.0% | |
| AATGAAAAAACAGCCACGGG+TGG | - | chr5_4:7006341-7006360 | None:intergenic | 45.0% | |
| !!! | CCCGTGGCTGTTTTTTCATT+TGG | + | chr5_4:7006341-7006360 | Msa0833890:CDS | 45.0% |
| GTTGGAAGAGAACACTCCTT+TGG | + | chr5_4:7006538-7006557 | Msa0833890:CDS | 45.0% | |
| CAACAAGCTATGTCAGCATC+GGG | - | chr5_4:7006623-7006642 | None:intergenic | 45.0% | |
| TAGACAGGGATCCATGTCTA+TGG | + | chr5_4:7006838-7006857 | Msa0833890:CDS | 45.0% | |
| ACAACAAGCAGCCATAGACA+TGG | - | chr5_4:7006852-7006871 | None:intergenic | 45.0% | |
| GTGAAGGTTGTGAGCAGGTA+AGG | - | chr5_4:7005277-7005296 | None:intergenic | 50.0% | |
| GAAGACGCTGTAAGCGTTTC+AGG | - | chr5_4:7005593-7005612 | None:intergenic | 50.0% | |
| GAAGGGGATGTTAGATCCCT+TGG | + | chr5_4:7005689-7005708 | Msa0833890:CDS | 50.0% | |
| ATCCCTTGGATGACAACCTC+CGG | + | chr5_4:7005703-7005722 | Msa0833890:CDS | 50.0% | |
| CGGCGAGAGGTTGTTAGATA+TGG | + | chr5_4:7005723-7005742 | Msa0833890:CDS | 50.0% | |
| GCTTCAGTTGTTGACATGGC+AGG | - | chr5_4:7005789-7005808 | None:intergenic | 50.0% | |
| GGGTGCTTCAGTTGTTGACA+TGG | - | chr5_4:7005793-7005812 | None:intergenic | 50.0% | |
| ! | TGAAGCACCCCATCATCAAG+AGG | + | chr5_4:7005803-7005822 | Msa0833890:CDS | 50.0% |
| GCCACCTCATCAACCCATTT+AGG | - | chr5_4:7005894-7005913 | None:intergenic | 50.0% | |
| TGGGTCATCCAACCAAGATC+TGG | - | chr5_4:7005918-7005937 | None:intergenic | 50.0% | |
| ! | CTTCAACAACGGACTCGGAT+AGG | - | chr5_4:7006193-7006212 | None:intergenic | 50.0% |
| GCGTCGCACTTCTTCAACAA+CGG | - | chr5_4:7006204-7006223 | None:intergenic | 50.0% | |
| AAGGCTCTGTTACCAACACG+AGG | - | chr5_4:7006371-7006390 | None:intergenic | 50.0% | |
| !! | CGTGTTGGTAACAGAGCCTT+TGG | + | chr5_4:7006371-7006390 | Msa0833890:CDS | 50.0% |
| ! | TCAGCATCGGGCTTCAAGTA+AGG | - | chr5_4:7006611-7006630 | None:intergenic | 50.0% |
| GTGAAGGTTGTGAGCAGGTA+AGG | - | chr5_4:7005277-7005296 | None:intergenic | 50.0% | |
| GAAGACGCTGTAAGCGTTTC+AGG | - | chr5_4:7005593-7005612 | None:intergenic | 50.0% | |
| GAAGGGGATGTTAGATCCCT+TGG | + | chr5_4:7005689-7005708 | Msa0833890:CDS | 50.0% | |
| ATCCCTTGGATGACAACCTC+CGG | + | chr5_4:7005703-7005722 | Msa0833890:CDS | 50.0% | |
| CGGCGAGAGGTTGTTAGATA+TGG | + | chr5_4:7005723-7005742 | Msa0833890:CDS | 50.0% | |
| GCTTCAGTTGTTGACATGGC+AGG | - | chr5_4:7005789-7005808 | None:intergenic | 50.0% | |
| GGGTGCTTCAGTTGTTGACA+TGG | - | chr5_4:7005793-7005812 | None:intergenic | 50.0% | |
| ! | TGAAGCACCCCATCATCAAG+AGG | + | chr5_4:7005803-7005822 | Msa0833890:CDS | 50.0% |
| GCCACCTCATCAACCCATTT+AGG | - | chr5_4:7005894-7005913 | None:intergenic | 50.0% | |
| TGGGTCATCCAACCAAGATC+TGG | - | chr5_4:7005918-7005937 | None:intergenic | 50.0% | |
| ! | CTTCAACAACGGACTCGGAT+AGG | - | chr5_4:7006193-7006212 | None:intergenic | 50.0% |
| GCGTCGCACTTCTTCAACAA+CGG | - | chr5_4:7006204-7006223 | None:intergenic | 50.0% | |
| AAGGCTCTGTTACCAACACG+AGG | - | chr5_4:7006371-7006390 | None:intergenic | 50.0% | |
| !! | CGTGTTGGTAACAGAGCCTT+TGG | + | chr5_4:7006371-7006390 | Msa0833890:CDS | 50.0% |
| ! | TCAGCATCGGGCTTCAAGTA+AGG | - | chr5_4:7006611-7006630 | None:intergenic | 50.0% |
| ! | TGTAAGCGTTTCAGGTGGCG+GGG | - | chr5_4:7005585-7005604 | None:intergenic | 55.0% |
| ! | CTGTAAGCGTTTCAGGTGGC+GGG | - | chr5_4:7005586-7005605 | None:intergenic | 55.0% |
| ! | GCTGTAAGCGTTTCAGGTGG+CGG | - | chr5_4:7005587-7005606 | None:intergenic | 55.0% |
| GACGCTGTAAGCGTTTCAGG+TGG | - | chr5_4:7005590-7005609 | None:intergenic | 55.0% | |
| GCGTCTTCTTTCCAAGACGG+CGG | + | chr5_4:7005605-7005624 | Msa0833890:CDS | 55.0% | |
| TGGAGAATACTCCGCCGTCT+TGG | - | chr5_4:7005619-7005638 | None:intergenic | 55.0% | |
| TCATGGCAGCAACGACTGGA+AGG | + | chr5_4:7005671-7005690 | Msa0833890:CDS | 55.0% | |
| CATGGCAGCAACGACTGGAA+GGG | + | chr5_4:7005672-7005691 | Msa0833890:CDS | 55.0% | |
| ATGGCAGCAACGACTGGAAG+GGG | + | chr5_4:7005673-7005692 | Msa0833890:CDS | 55.0% | |
| ATCTAACAACCTCTCGCCGG+AGG | - | chr5_4:7005722-7005741 | None:intergenic | 55.0% | |
| GATGAGGTGGCACCAGATCT+TGG | + | chr5_4:7005903-7005922 | Msa0833890:CDS | 55.0% | |
| AGGTGGCACCAGATCTTGGT+TGG | + | chr5_4:7005907-7005926 | Msa0833890:CDS | 55.0% | |
| ! | GATGACCCAGCGTTCTAGCT+GGG | + | chr5_4:7005929-7005948 | Msa0833890:CDS | 55.0% |
| TCCAACCCAGCTAGAACGCT+GGG | - | chr5_4:7005937-7005956 | None:intergenic | 55.0% | |
| ATCCAACCCAGCTAGAACGC+TGG | - | chr5_4:7005938-7005957 | None:intergenic | 55.0% | |
| AGTCTGAGTCTGAGCGTCCT+CGG | - | chr5_4:7006090-7006109 | None:intergenic | 55.0% | |
| CAGACTCAGACTCAGGCACA+AGG | + | chr5_4:7006098-7006117 | Msa0833890:CDS | 55.0% | |
| GCCGAGGAAATTAGCACGTG+CGG | + | chr5_4:7006305-7006324 | Msa0833890:CDS | 55.0% | |
| CCCGCACGTGCTAATTTCCT+CGG | - | chr5_4:7006309-7006328 | None:intergenic | 55.0% | |
| CCGAGGAAATTAGCACGTGC+GGG | + | chr5_4:7006306-7006325 | Msa0833890:CDS | 55.0% | |
| ! | TCATTTGGCGGACCTCGTGT+TGG | + | chr5_4:7006356-7006375 | Msa0833890:CDS | 55.0% |
| !! | GACGTGATTACAAGGGTGCC+AGG | + | chr5_4:7006446-7006465 | Msa0833890:CDS | 55.0% |
| ! | TGTAAGCGTTTCAGGTGGCG+GGG | - | chr5_4:7005585-7005604 | None:intergenic | 55.0% |
| ! | CTGTAAGCGTTTCAGGTGGC+GGG | - | chr5_4:7005586-7005605 | None:intergenic | 55.0% |
| ! | GCTGTAAGCGTTTCAGGTGG+CGG | - | chr5_4:7005587-7005606 | None:intergenic | 55.0% |
| GACGCTGTAAGCGTTTCAGG+TGG | - | chr5_4:7005590-7005609 | None:intergenic | 55.0% | |
| GCGTCTTCTTTCCAAGACGG+CGG | + | chr5_4:7005605-7005624 | Msa0833890:CDS | 55.0% | |
| TGGAGAATACTCCGCCGTCT+TGG | - | chr5_4:7005619-7005638 | None:intergenic | 55.0% | |
| TCATGGCAGCAACGACTGGA+AGG | + | chr5_4:7005671-7005690 | Msa0833890:CDS | 55.0% | |
| CATGGCAGCAACGACTGGAA+GGG | + | chr5_4:7005672-7005691 | Msa0833890:CDS | 55.0% | |
| ATGGCAGCAACGACTGGAAG+GGG | + | chr5_4:7005673-7005692 | Msa0833890:CDS | 55.0% | |
| ATCTAACAACCTCTCGCCGG+AGG | - | chr5_4:7005722-7005741 | None:intergenic | 55.0% | |
| GATGAGGTGGCACCAGATCT+TGG | + | chr5_4:7005903-7005922 | Msa0833890:CDS | 55.0% | |
| AGGTGGCACCAGATCTTGGT+TGG | + | chr5_4:7005907-7005926 | Msa0833890:CDS | 55.0% | |
| ! | GATGACCCAGCGTTCTAGCT+GGG | + | chr5_4:7005929-7005948 | Msa0833890:CDS | 55.0% |
| TCCAACCCAGCTAGAACGCT+GGG | - | chr5_4:7005937-7005956 | None:intergenic | 55.0% | |
| ATCCAACCCAGCTAGAACGC+TGG | - | chr5_4:7005938-7005957 | None:intergenic | 55.0% | |
| AGTCTGAGTCTGAGCGTCCT+CGG | - | chr5_4:7006090-7006109 | None:intergenic | 55.0% | |
| CAGACTCAGACTCAGGCACA+AGG | + | chr5_4:7006098-7006117 | Msa0833890:CDS | 55.0% | |
| GCCGAGGAAATTAGCACGTG+CGG | + | chr5_4:7006305-7006324 | Msa0833890:CDS | 55.0% | |
| CCCGCACGTGCTAATTTCCT+CGG | - | chr5_4:7006309-7006328 | None:intergenic | 55.0% | |
| CCGAGGAAATTAGCACGTGC+GGG | + | chr5_4:7006306-7006325 | Msa0833890:CDS | 55.0% | |
| ! | TCATTTGGCGGACCTCGTGT+TGG | + | chr5_4:7006356-7006375 | Msa0833890:CDS | 55.0% |
| !! | GACGTGATTACAAGGGTGCC+AGG | + | chr5_4:7006446-7006465 | Msa0833890:CDS | 55.0% |
| !! | TAAGCGTTTCAGGTGGCGGG+GGG | - | chr5_4:7005583-7005602 | None:intergenic | 60.0% |
| ! | GTAAGCGTTTCAGGTGGCGG+GGG | - | chr5_4:7005584-7005603 | None:intergenic | 60.0% |
| CGCCGGAGGTTGTCATCCAA+GGG | - | chr5_4:7005708-7005727 | None:intergenic | 60.0% | |
| TCGCCGGAGGTTGTCATCCA+AGG | - | chr5_4:7005709-7005728 | None:intergenic | 60.0% | |
| GGATGACCCAGCGTTCTAGC+TGG | + | chr5_4:7005928-7005947 | Msa0833890:CDS | 60.0% | |
| ! | ACCCAGCGTTCTAGCTGGGT+TGG | + | chr5_4:7005933-7005952 | Msa0833890:CDS | 60.0% |
| GTCTGAGTCTGAGCGTCCTC+GGG | - | chr5_4:7006089-7006108 | None:intergenic | 60.0% | |
| GGACGCTCAGACTCAGACTC+AGG | + | chr5_4:7006091-7006110 | Msa0833890:CDS | 60.0% | |
| ACCGTTACCGGCCATAGCCT+TGG | + | chr5_4:7006260-7006279 | Msa0833890:CDS | 60.0% | |
| GCCAAGGCTATGGCCGGTAA+CGG | - | chr5_4:7006264-7006283 | None:intergenic | 60.0% | |
| CTAGTGTCGCGCCAAGGCTA+TGG | - | chr5_4:7006274-7006293 | None:intergenic | 60.0% | |
| ! | ATAGGGCTAGTGTCGCGCCA+AGG | - | chr5_4:7006280-7006299 | None:intergenic | 60.0% |
| TGGCGCGACACTAGCCCTAT+TGG | + | chr5_4:7006280-7006299 | Msa0833890:CDS | 60.0% | |
| CGCGACACTAGCCCTATTGG+TGG | + | chr5_4:7006283-7006302 | Msa0833890:CDS | 60.0% | |
| ! | ACTAGCCCTATTGGTGGCCG+AGG | + | chr5_4:7006289-7006308 | Msa0833890:CDS | 60.0% |
| !! | TAAGCGTTTCAGGTGGCGGG+GGG | - | chr5_4:7005583-7005602 | None:intergenic | 60.0% |
| ! | GTAAGCGTTTCAGGTGGCGG+GGG | - | chr5_4:7005584-7005603 | None:intergenic | 60.0% |
| CGCCGGAGGTTGTCATCCAA+GGG | - | chr5_4:7005708-7005727 | None:intergenic | 60.0% | |
| TCGCCGGAGGTTGTCATCCA+AGG | - | chr5_4:7005709-7005728 | None:intergenic | 60.0% | |
| GGATGACCCAGCGTTCTAGC+TGG | + | chr5_4:7005928-7005947 | Msa0833890:CDS | 60.0% | |
| ! | ACCCAGCGTTCTAGCTGGGT+TGG | + | chr5_4:7005933-7005952 | Msa0833890:CDS | 60.0% |
| GTCTGAGTCTGAGCGTCCTC+GGG | - | chr5_4:7006089-7006108 | None:intergenic | 60.0% | |
| GGACGCTCAGACTCAGACTC+AGG | + | chr5_4:7006091-7006110 | Msa0833890:CDS | 60.0% | |
| ACCGTTACCGGCCATAGCCT+TGG | + | chr5_4:7006260-7006279 | Msa0833890:CDS | 60.0% | |
| GCCAAGGCTATGGCCGGTAA+CGG | - | chr5_4:7006264-7006283 | None:intergenic | 60.0% | |
| CTAGTGTCGCGCCAAGGCTA+TGG | - | chr5_4:7006274-7006293 | None:intergenic | 60.0% | |
| ! | ATAGGGCTAGTGTCGCGCCA+AGG | - | chr5_4:7006280-7006299 | None:intergenic | 60.0% |
| TGGCGCGACACTAGCCCTAT+TGG | + | chr5_4:7006280-7006299 | Msa0833890:CDS | 60.0% | |
| CGCGACACTAGCCCTATTGG+TGG | + | chr5_4:7006283-7006302 | Msa0833890:CDS | 60.0% | |
| ! | ACTAGCCCTATTGGTGGCCG+AGG | + | chr5_4:7006289-7006308 | Msa0833890:CDS | 60.0% |
| GGATGACAACCTCCGGCGAG+AGG | + | chr5_4:7005710-7005729 | Msa0833890:CDS | 65.0% | |
| TGTCGCGCCAAGGCTATGGC+CGG | - | chr5_4:7006270-7006289 | None:intergenic | 65.0% | |
| ACAGCCACGGGTGGCACGTT+TGG | - | chr5_4:7006332-7006351 | None:intergenic | 65.0% | |
| GGATGACAACCTCCGGCGAG+AGG | + | chr5_4:7005710-7005729 | Msa0833890:CDS | 65.0% | |
| TGTCGCGCCAAGGCTATGGC+CGG | - | chr5_4:7006270-7006289 | None:intergenic | 65.0% | |
| ACAGCCACGGGTGGCACGTT+TGG | - | chr5_4:7006332-7006351 | None:intergenic | 65.0% | |
| CGGGCCAAACGTGCCACCCG+TGG | + | chr5_4:7006325-7006344 | Msa0833890:CDS | 75.0% | |
| CGGGCCAAACGTGCCACCCG+TGG | + | chr5_4:7006325-7006344 | Msa0833890:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7005252 | 7006892 | 7005252 | ID=Msa0833890;Name=Msa0833890 |
| chr5_4 | mRNA | 7005252 | 7006892 | 7005252 | ID=Msa0833890-mRNA-1;Parent=Msa0833890;Name=Msa0833890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|546 |
| chr5_4 | exon | 7005252 | 7006892 | 7005252 | ID=Msa0833890-mRNA-1:exon:3072;Parent=Msa0833890-mRNA-1 |
| chr5_4 | CDS | 7005252 | 7006892 | 7005252 | ID=Msa0833890-mRNA-1:cds;Parent=Msa0833890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
