AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0833890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833890 MtrunA17_Chr5g0399641 97.445 548 12 2 1 546 1 548 0.0 1106
Msa0833890 MtrunA17_Chr4g0055691 65.766 555 137 9 6 544 4 521 0.0 717
Msa0833890 MtrunA17_Chr7g0250561 46.907 388 178 8 129 492 65 448 2.65e-119 359
Msa0833890 MtrunA17_Chr7g0250611 45.553 371 167 9 133 492 75 421 4.77e-109 332
Msa0833890 MtrunA17_Chr4g0039301 38.281 384 201 7 128 493 95 460 1.75e-84 272
Msa0833890 MtrunA17_Chr7g0260671 39.474 380 195 11 133 493 74 437 1.49e-80 261
Msa0833890 MtrunA17_Chr7g0260681 39.394 363 185 12 133 476 74 420 1.76e-76 248
Msa0833890 MtrunA17_Chr2g0283561 35.156 384 192 9 133 493 39 388 1.32e-63 214
Msa0833890 MtrunA17_Chr7g0214711 32.683 410 215 13 109 500 80 446 2.58e-57 199
Msa0833890 MtrunA17_Chr4g0046001 33.075 387 195 11 133 495 13 359 4.84e-52 182
Msa0833890 MtrunA17_Chr4g0046011 33.333 387 194 12 133 495 4 350 2.55e-51 180
Msa0833890 MtrunA17_Chr4g0041311 29.250 400 217 10 129 493 24 392 5.51e-49 175
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833890 AT4G16820.1 55.179 531 198 10 25 546 18 517 0.0 560
Msa0833890 AT2G44810.2 50.136 369 170 7 133 494 86 447 4.61e-123 369
Msa0833890 AT2G44810.1 50.413 363 166 7 139 494 2 357 1.25e-120 360
Msa0833890 AT1G30370.1 38.015 413 219 10 124 517 105 499 2.57e-86 277
Msa0833890 AT1G51440.1 41.463 369 172 10 137 481 91 439 1.97e-83 269
Msa0833890 AT1G06800.1 39.633 381 187 10 137 493 89 450 4.17e-79 258
Msa0833890 AT2G30550.1 39.227 362 186 7 137 479 105 451 7.44e-79 255
Msa0833890 AT1G06800.2 40.385 364 174 10 137 476 89 433 9.98e-79 254
Msa0833890 AT2G30550.2 38.830 376 196 8 137 493 105 465 6.53e-78 255
Msa0833890 AT2G31690.1 35.813 363 184 11 133 475 88 421 4.64e-65 220
Msa0833890 AT1G05800.1 35.833 360 185 9 133 475 80 410 6.84e-64 216
Msa0833890 AT4G18550.1 32.771 415 211 11 133 515 19 397 3.62e-59 202
Msa0833890 AT4G18550.2 32.771 415 211 11 133 515 36 414 4.94e-59 202
Msa0833890 AT1G06250.1 31.959 388 200 10 133 493 5 355 5.59e-54 189
Msa0833890 AT2G42690.1 32.468 385 204 8 137 493 8 364 2.86e-51 181
Msa0833890 AT4G18550.3 36.458 288 152 8 133 397 36 315 9.28e-46 164
Msa0833890 AT1G06250.2 30.797 276 140 7 234 493 1 241 4.80e-32 125

Find 134 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAATTGGATTACCTAAA+TGG 0.127660 5_4:+7005877 Msa0833890:CDS
CCTCGGGTAAATCGACTAAT+TGG 0.206931 5_4:-7006070 None:intergenic
GAAGACGCTGTAAGCGTTTC+AGG 0.238955 5_4:-7005590 None:intergenic
TAACCTAGATGAGTTGTTAT+TGG 0.251262 5_4:-7005379 None:intergenic
CTCTTAGCATTAGCTCTAAA+TGG 0.258178 5_4:-7006698 None:intergenic
CGCCTTTGTAAAGTTCAATA+AGG 0.276950 5_4:-7006223 None:intergenic
AAAAGATGAAGGTTGTTTAA+TGG 0.278707 5_4:-7005343 None:intergenic
TTTCTCCCGATGATATTTCT+TGG 0.282496 5_4:-7005636 None:intergenic
AGAGGCTTATTTACATTTAG+TGG 0.289753 5_4:+7006652 Msa0833890:CDS
ATGATGATTCCAAAGGCTTT+TGG 0.306541 5_4:-7005434 None:intergenic
GCCACCTCATCAACCCATTT+AGG 0.326253 5_4:-7005891 None:intergenic
GTTGTATTGGTTGTTGAAAC+TGG 0.332759 5_4:-7005464 None:intergenic
ACTCAACTTTGGGCTTTGAT+TGG 0.339758 5_4:-7006121 None:intergenic
ACAGCCACGGGTGGCACGTT+TGG 0.344135 5_4:-7006329 None:intergenic
TAATTTCCTCGGCCACCAAT+AGG 0.366166 5_4:-7006295 None:intergenic
CGGCGAGAGGTTGTTAGATA+TGG 0.368122 5_4:+7005723 Msa0833890:CDS
CATAAATCCACACTCAACTT+TGG 0.371336 5_4:-7006132 None:intergenic
CTGTAAGCGTTTCAGGTGGC+GGG 0.378709 5_4:-7005583 None:intergenic
TCTTCAGCTGCTTTAATCTC+TGG 0.381476 5_4:-7005552 None:intergenic
AACTTCCACTTGTCTTGAAT+GGG 0.386150 5_4:+7006031 Msa0833890:CDS
GTTGGAAGAGAACACTCCTT+TGG 0.394244 5_4:+7006538 Msa0833890:CDS
CGTGTTGGTAACAGAGCCTT+TGG 0.394565 5_4:+7006371 Msa0833890:CDS
TAAAAGAGAGATTGCAAGAA+TGG 0.395214 5_4:+7005977 Msa0833890:CDS
ATAAATCCACACTCAACTTT+GGG 0.396883 5_4:-7006131 None:intergenic
TCTTGATAGCCAAAAGCCTT+TGG 0.405866 5_4:+7005425 Msa0833890:CDS
GGATGACCCAGCGTTCTAGC+TGG 0.407435 5_4:+7005928 Msa0833890:CDS
ATCAATTGGATTACCTAAAT+GGG 0.408997 5_4:+7005878 Msa0833890:CDS
GGTTGTTAGATATGGTGATT+TGG 0.409569 5_4:+7005731 Msa0833890:CDS
GAACTTCCACTTGTCTTGAA+TGG 0.412888 5_4:+7006030 Msa0833890:CDS
GACTTAACCTAGCAAAACTA+TGG 0.417487 5_4:+7005529 Msa0833890:CDS
CTGTATGCCACATCATCAAT+TGG 0.418121 5_4:+7005864 Msa0833890:CDS
AATTTCCTCGGCCACCAATA+GGG 0.421437 5_4:-7006294 None:intergenic
ATGAGCTTGTACAAGACAAA+AGG 0.423174 5_4:+7006152 Msa0833890:CDS
TTGGAAGAGAACACTCCTTT+GGG 0.425192 5_4:+7006539 Msa0833890:CDS
GAATTAAGCATAACCGTTAC+CGG 0.425326 5_4:+7006248 Msa0833890:CDS
AAGAATTCCAAGGTTGTTAG+TGG 0.426321 5_4:+7006503 Msa0833890:CDS
ACATTTAGTGGATGGATACA+TGG 0.441165 5_4:+7006664 Msa0833890:CDS
AAACCAATAACAACTCATCT+AGG 0.443716 5_4:+7005376 Msa0833890:CDS
AATATCATGGCAGCAACGAC+TGG 0.446528 5_4:+7005667 Msa0833890:CDS
GATGAGGTGGCACCAGATCT+TGG 0.447657 5_4:+7005903 Msa0833890:CDS
CCCGCACGTGCTAATTTCCT+CGG 0.448005 5_4:-7006306 None:intergenic
TAGACAGGGATCCATGTCTA+TGG 0.450095 5_4:+7006838 Msa0833890:CDS
GTTGTTTAATGGAAGAAGAA+TGG 0.450283 5_4:-7005332 None:intergenic
CACTTCTTCAACAACGGACT+CGG 0.454486 5_4:-7006195 None:intergenic
GTGAAGGTTGTGAGCAGGTA+AGG 0.457213 5_4:-7005274 None:intergenic
GTAAGCGTTTCAGGTGGCGG+GGG 0.458362 5_4:-7005581 None:intergenic
CTTGTCTAATCTTAGTAGAC+AGG 0.459042 5_4:+7006823 Msa0833890:CDS
CTAGTGTCGCGCCAAGGCTA+TGG 0.467757 5_4:-7006271 None:intergenic
GCTGTAAGCGTTTCAGGTGG+CGG 0.475077 5_4:-7005584 None:intergenic
GTCTGAGTCTGAGCGTCCTC+GGG 0.477426 5_4:-7006086 None:intergenic
TCGCCGGAGGTTGTCATCCA+AGG 0.480124 5_4:-7005706 None:intergenic
GAAGGGGATGTTAGATCCCT+TGG 0.480349 5_4:+7005689 Msa0833890:CDS
TGGGTCATCCAACCAAGATC+TGG 0.480411 5_4:-7005915 None:intergenic
TGAAGAGAAGCAAAAGATGA+AGG 0.480894 5_4:-7005354 None:intergenic
GCTTCAGTTGTTGACATGGC+AGG 0.485069 5_4:-7005786 None:intergenic
TGGAGAATACTCCGCCGTCT+TGG 0.486287 5_4:-7005616 None:intergenic
TATTGGTTGTTGAAACTGGT+TGG 0.487668 5_4:-7005460 None:intergenic
AGTCTGAGTCTGAGCGTCCT+CGG 0.490474 5_4:-7006087 None:intergenic
AAAAGAGAGATTGCAAGAAT+GGG 0.490721 5_4:+7005978 Msa0833890:CDS
ACACACAAGACGTGATTACA+AGG 0.492272 5_4:+7006438 Msa0833890:CDS
CTCGGGTAAATCGACTAATT+GGG 0.499666 5_4:-7006069 None:intergenic
AACAACTCCACTAACAACCT+TGG 0.499945 5_4:-7006510 None:intergenic
ACAAGGACACCTCTTGATGA+TGG 0.502751 5_4:-7005812 None:intergenic
TGAGCTTGTACAAGACAAAA+GGG 0.503559 5_4:+7006153 Msa0833890:CDS
CCTTTGGGATATTCACATGT+TGG 0.504000 5_4:+7006554 Msa0833890:CDS
GAAATATCATCGGGAGAAAG+TGG 0.505201 5_4:+7005640 Msa0833890:CDS
CTTCAACAACGGACTCGGAT+AGG 0.508893 5_4:-7006190 None:intergenic
TCAGCATCGGGCTTCAAGTA+AGG 0.510052 5_4:-7006608 None:intergenic
CAACAAGCTATGTCAGCATC+GGG 0.515189 5_4:-7006620 None:intergenic
GCTTATTTACATTTAGTGGA+TGG 0.516513 5_4:+7006656 Msa0833890:CDS
GATGACCCAGCGTTCTAGCT+GGG 0.518537 5_4:+7005929 Msa0833890:CDS
GAAGAATGGCATCTGAAACT+AGG 0.523536 5_4:-7005318 None:intergenic
CAAGGACACCTCTTGATGAT+GGG 0.525696 5_4:-7005811 None:intergenic
TCATCAAGAGGTGTCCTTGT+CGG 0.525857 5_4:+7005815 Msa0833890:CDS
TTGTATACTAGTAAGGCTAA+AGG 0.526986 5_4:+7006767 Msa0833890:CDS
ATCCCTTGGATGACAACCTC+CGG 0.528647 5_4:+7005703 Msa0833890:CDS
ATCCAACCCAGCTAGAACGC+TGG 0.529696 5_4:-7005935 None:intergenic
GACGTGATTACAAGGGTGCC+AGG 0.535150 5_4:+7006446 Msa0833890:CDS
CGCGACACTAGCCCTATTGG+TGG 0.536052 5_4:+7006283 Msa0833890:CDS
TAGTGGAGTTGTTGATATGT+TGG 0.537325 5_4:+7006520 Msa0833890:CDS
TGTAAGCGTTTCAGGTGGCG+GGG 0.538613 5_4:-7005582 None:intergenic
ACCGTTACCGGCCATAGCCT+TGG 0.539736 5_4:+7006260 Msa0833890:CDS
ATGGCAGCAACGACTGGAAG+GGG 0.541567 5_4:+7005673 Msa0833890:CDS
ACCTAAATGGGTTGATGAGG+TGG 0.548455 5_4:+7005890 Msa0833890:CDS
ACTAGCCCTATTGGTGGCCG+AGG 0.548502 5_4:+7006289 Msa0833890:CDS
ATTCATGAAGATGATGGACT+AGG 0.548753 5_4:-7006872 None:intergenic
AGGTAATCCAATTGATGATG+TGG 0.548802 5_4:-7005871 None:intergenic
GATATTGTGATATCTCTTCG+TGG 0.549518 5_4:+7006008 Msa0833890:CDS
TTCAGCCCATTCAAGACAAG+TGG 0.553127 5_4:-7006036 None:intergenic
GGACGCTCAGACTCAGACTC+AGG 0.556991 5_4:+7006091 Msa0833890:CDS
CGCCGGAGGTTGTCATCCAA+GGG 0.557417 5_4:-7005705 None:intergenic
ACAACAAGCTATGTCAGCAT+CGG 0.563181 5_4:-7006621 None:intergenic
TCATGGCAGCAACGACTGGA+AGG 0.564182 5_4:+7005671 Msa0833890:CDS
CGCCTTATTGAACTTTACAA+AGG 0.564214 5_4:+7006221 Msa0833890:CDS
ATTCTCCAAGAAATATCATC+GGG 0.566867 5_4:+7005631 Msa0833890:CDS
AGCTTGTTGTCATGATCTAG+AGG 0.571065 5_4:+7006634 Msa0833890:CDS
TGATGTGGCATACAGACTCT+TGG 0.573169 5_4:-7005856 None:intergenic
TAAGCGTTTCAGGTGGCGGG+GGG 0.576225 5_4:-7005580 None:intergenic
GGGTGCTTCAGTTGTTGACA+TGG 0.576279 5_4:-7005790 None:intergenic
CCGAGGAAATTAGCACGTGC+GGG 0.576932 5_4:+7006306 Msa0833890:CDS
TCATTTGGCGGACCTCGTGT+TGG 0.577348 5_4:+7006356 Msa0833890:CDS
CATATCTAACAACCTCTCGC+CGG 0.581786 5_4:-7005722 None:intergenic
CATGGCAGCAACGACTGGAA+GGG 0.583943 5_4:+7005672 Msa0833890:CDS
AATTTGTGAAGGTTGTGAGC+AGG 0.587076 5_4:-7005279 None:intergenic
GCCAAGGCTATGGCCGGTAA+CGG 0.591069 5_4:-7006261 None:intergenic
TATTCTCCAAGAAATATCAT+CGG 0.595846 5_4:+7005630 Msa0833890:CDS
AGAAAGTGGAGGGAATATCA+TGG 0.601338 5_4:+7005654 Msa0833890:CDS
TTGGTTGATGATGATTCCAA+AGG 0.613659 5_4:-7005441 None:intergenic
AGGTGGCACCAGATCTTGGT+TGG 0.618491 5_4:+7005907 Msa0833890:CDS
GGATGACAACCTCCGGCGAG+AGG 0.618831 5_4:+7005710 Msa0833890:CDS
CAGACTCAGACTCAGGCACA+AGG 0.619166 5_4:+7006098 Msa0833890:CDS
TTAGTGCTTGAAATTTGTGA+AGG 0.626013 5_4:-7005290 None:intergenic
TCAAAGCCCAAAGTTGAGTG+TGG 0.627127 5_4:+7006125 Msa0833890:CDS
ACAACAAGCAGCCATAGACA+TGG 0.628855 5_4:-7006849 None:intergenic
GCGTCGCACTTCTTCAACAA+CGG 0.630718 5_4:-7006201 None:intergenic
TTGTCTAATCTTAGTAGACA+GGG 0.632883 5_4:+7006824 Msa0833890:CDS
ATCTAACAACCTCTCGCCGG+AGG 0.634684 5_4:-7005719 None:intergenic
TGAAGCACCCCATCATCAAG+AGG 0.635362 5_4:+7005803 Msa0833890:CDS
AAGGACACCTCTTGATGATG+GGG 0.638913 5_4:-7005810 None:intergenic
TGTCGCGCCAAGGCTATGGC+CGG 0.642253 5_4:-7006267 None:intergenic
ACAGCGTCTTCTTTCCAAGA+CGG 0.643880 5_4:+7005602 Msa0833890:CDS
TCTGTTAATCTTAATAGACA+AGG 0.646433 5_4:+7006794 Msa0833890:CDS
TATCATCGGGAGAAAGTGGA+GGG 0.648802 5_4:+7005644 Msa0833890:CDS
ATTACCTAAATGGGTTGATG+AGG 0.663925 5_4:+7005887 Msa0833890:CDS
ATATCATCGGGAGAAAGTGG+AGG 0.666029 5_4:+7005643 Msa0833890:CDS
ATAGGGCTAGTGTCGCGCCA+AGG 0.667674 5_4:-7006277 None:intergenic
CCAATTAGTCGATTTACCCG+AGG 0.667868 5_4:+7006070 Msa0833890:CDS
GACGCTGTAAGCGTTTCAGG+TGG 0.674999 5_4:-7005587 None:intergenic
TTTATAAGATCTCTCCGACA+AGG 0.680022 5_4:-7005829 None:intergenic
GCGTCTTCTTTCCAAGACGG+CGG 0.680773 5_4:+7005605 Msa0833890:CDS
CCAACATGTGAATATCCCAA+AGG 0.681313 5_4:-7006554 None:intergenic
GAGCTTGTACAAGACAAAAG+GGG 0.708452 5_4:+7006154 Msa0833890:CDS
CACACAAGACGTGATTACAA+GGG 0.729372 5_4:+7006439 Msa0833890:CDS
AAGGCTCTGTTACCAACACG+AGG 0.743509 5_4:-7006368 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAATTAAGAATTCCA+AGG + chr5_4:7006493-7006512 Msa0833890:CDS 20.0%
!! AAAAAAGTTGTATACTAGTA+AGG + chr5_4:7006760-7006779 Msa0833890:CDS 20.0%
!! AGAAAAAATTAAGAATTCCA+AGG + chr5_4:7006493-7006512 Msa0833890:CDS 20.0%
!! AAAAAAGTTGTATACTAGTA+AGG + chr5_4:7006760-7006779 Msa0833890:CDS 20.0%
! AAAAGATGAAGGTTGTTTAA+TGG - chr5_4:7005346-7005365 None:intergenic 25.0%
!!! TTTTTGTCACTTTTTTGGAT+AGG - chr5_4:7005489-7005508 None:intergenic 25.0%
! ATCCAAAAAAGTGACAAAAA+AGG + chr5_4:7005489-7005508 Msa0833890:CDS 25.0%
!!! TTCCTTTTTTGTCACTTTTT+TGG - chr5_4:7005494-7005513 None:intergenic 25.0%
! AAAGGAAAAAACTTTCTTGA+AGG + chr5_4:7005507-7005526 Msa0833890:CDS 25.0%
! TATTCTCCAAGAAATATCAT+CGG + chr5_4:7005630-7005649 Msa0833890:CDS 25.0%
! ATCAATTGGATTACCTAAAT+GGG + chr5_4:7005878-7005897 Msa0833890:CDS 25.0%
! TCTGTTAATCTTAATAGACA+AGG + chr5_4:7006794-7006813 Msa0833890:CDS 25.0%
! AAAAGATGAAGGTTGTTTAA+TGG - chr5_4:7005346-7005365 None:intergenic 25.0%
!!! TTTTTGTCACTTTTTTGGAT+AGG - chr5_4:7005489-7005508 None:intergenic 25.0%
! ATCCAAAAAAGTGACAAAAA+AGG + chr5_4:7005489-7005508 Msa0833890:CDS 25.0%
!!! TTCCTTTTTTGTCACTTTTT+TGG - chr5_4:7005494-7005513 None:intergenic 25.0%
! AAAGGAAAAAACTTTCTTGA+AGG + chr5_4:7005507-7005526 Msa0833890:CDS 25.0%
! TATTCTCCAAGAAATATCAT+CGG + chr5_4:7005630-7005649 Msa0833890:CDS 25.0%
! ATCAATTGGATTACCTAAAT+GGG + chr5_4:7005878-7005897 Msa0833890:CDS 25.0%
! TCTGTTAATCTTAATAGACA+AGG + chr5_4:7006794-7006813 Msa0833890:CDS 25.0%
TTAGTGCTTGAAATTTGTGA+AGG - chr5_4:7005293-7005312 None:intergenic 30.0%
GTTGTTTAATGGAAGAAGAA+TGG - chr5_4:7005335-7005354 None:intergenic 30.0%
AAACCAATAACAACTCATCT+AGG + chr5_4:7005376-7005395 Msa0833890:CDS 30.0%
TAACCTAGATGAGTTGTTAT+TGG - chr5_4:7005382-7005401 None:intergenic 30.0%
!!! CTTTTTTGGATAGGTTGTAT+TGG - chr5_4:7005480-7005499 None:intergenic 30.0%
ATTCTCCAAGAAATATCATC+GGG + chr5_4:7005631-7005650 Msa0833890:CDS 30.0%
CATCAATTGGATTACCTAAA+TGG + chr5_4:7005877-7005896 Msa0833890:CDS 30.0%
TAAAAGAGAGATTGCAAGAA+TGG + chr5_4:7005977-7005996 Msa0833890:CDS 30.0%
AAAAGAGAGATTGCAAGAAT+GGG + chr5_4:7005978-7005997 Msa0833890:CDS 30.0%
ATAAATCCACACTCAACTTT+GGG - chr5_4:7006134-7006153 None:intergenic 30.0%
AGAGGCTTATTTACATTTAG+TGG + chr5_4:7006652-7006671 Msa0833890:CDS 30.0%
GCTTATTTACATTTAGTGGA+TGG + chr5_4:7006656-7006675 Msa0833890:CDS 30.0%
TTGTATACTAGTAAGGCTAA+AGG + chr5_4:7006767-7006786 Msa0833890:CDS 30.0%
TTGTCTAATCTTAGTAGACA+GGG + chr5_4:7006824-7006843 Msa0833890:CDS 30.0%
TTAGTGCTTGAAATTTGTGA+AGG - chr5_4:7005293-7005312 None:intergenic 30.0%
GTTGTTTAATGGAAGAAGAA+TGG - chr5_4:7005335-7005354 None:intergenic 30.0%
AAACCAATAACAACTCATCT+AGG + chr5_4:7005376-7005395 Msa0833890:CDS 30.0%
TAACCTAGATGAGTTGTTAT+TGG - chr5_4:7005382-7005401 None:intergenic 30.0%
!!! CTTTTTTGGATAGGTTGTAT+TGG - chr5_4:7005480-7005499 None:intergenic 30.0%
ATTCTCCAAGAAATATCATC+GGG + chr5_4:7005631-7005650 Msa0833890:CDS 30.0%
CATCAATTGGATTACCTAAA+TGG + chr5_4:7005877-7005896 Msa0833890:CDS 30.0%
TAAAAGAGAGATTGCAAGAA+TGG + chr5_4:7005977-7005996 Msa0833890:CDS 30.0%
AAAAGAGAGATTGCAAGAAT+GGG + chr5_4:7005978-7005997 Msa0833890:CDS 30.0%
ATAAATCCACACTCAACTTT+GGG - chr5_4:7006134-7006153 None:intergenic 30.0%
AGAGGCTTATTTACATTTAG+TGG + chr5_4:7006652-7006671 Msa0833890:CDS 30.0%
GCTTATTTACATTTAGTGGA+TGG + chr5_4:7006656-7006675 Msa0833890:CDS 30.0%
TTGTATACTAGTAAGGCTAA+AGG + chr5_4:7006767-7006786 Msa0833890:CDS 30.0%
TTGTCTAATCTTAGTAGACA+GGG + chr5_4:7006824-7006843 Msa0833890:CDS 30.0%
TGAAGAGAAGCAAAAGATGA+AGG - chr5_4:7005357-7005376 None:intergenic 35.0%
! ATGATGATTCCAAAGGCTTT+TGG - chr5_4:7005437-7005456 None:intergenic 35.0%
!! TTGGTTGATGATGATTCCAA+AGG - chr5_4:7005444-7005463 None:intergenic 35.0%
! TATTGGTTGTTGAAACTGGT+TGG - chr5_4:7005463-7005482 None:intergenic 35.0%
!! GTTGTATTGGTTGTTGAAAC+TGG - chr5_4:7005467-7005486 None:intergenic 35.0%
GACTTAACCTAGCAAAACTA+TGG + chr5_4:7005529-7005548 Msa0833890:CDS 35.0%
TTTCTCCCGATGATATTTCT+TGG - chr5_4:7005639-7005658 None:intergenic 35.0%
GGTTGTTAGATATGGTGATT+TGG + chr5_4:7005731-7005750 Msa0833890:CDS 35.0%
TTTATAAGATCTCTCCGACA+AGG - chr5_4:7005832-7005851 None:intergenic 35.0%
!! AGGTAATCCAATTGATGATG+TGG - chr5_4:7005874-7005893 None:intergenic 35.0%
!! ATTACCTAAATGGGTTGATG+AGG + chr5_4:7005887-7005906 Msa0833890:CDS 35.0%
GATATTGTGATATCTCTTCG+TGG + chr5_4:7006008-7006027 Msa0833890:CDS 35.0%
AACTTCCACTTGTCTTGAAT+GGG + chr5_4:7006031-7006050 Msa0833890:CDS 35.0%
CATAAATCCACACTCAACTT+TGG - chr5_4:7006135-7006154 None:intergenic 35.0%
ATGAGCTTGTACAAGACAAA+AGG + chr5_4:7006152-7006171 Msa0833890:CDS 35.0%
TGAGCTTGTACAAGACAAAA+GGG + chr5_4:7006153-7006172 Msa0833890:CDS 35.0%
! CGCCTTATTGAACTTTACAA+AGG + chr5_4:7006221-7006240 Msa0833890:CDS 35.0%
CGCCTTTGTAAAGTTCAATA+AGG - chr5_4:7006226-7006245 None:intergenic 35.0%
GAATTAAGCATAACCGTTAC+CGG + chr5_4:7006248-7006267 Msa0833890:CDS 35.0%
!! CTTTTCAAGATGTTCTCCAA+AGG - chr5_4:7006390-7006409 None:intergenic 35.0%
TCCTCGCTTAAAAATATTCC+TGG - chr5_4:7006467-7006486 None:intergenic 35.0%
AAGAATTCCAAGGTTGTTAG+TGG + chr5_4:7006503-7006522 Msa0833890:CDS 35.0%
TAGTGGAGTTGTTGATATGT+TGG + chr5_4:7006520-7006539 Msa0833890:CDS 35.0%
! ACATTTAGTGGATGGATACA+TGG + chr5_4:7006664-7006683 Msa0833890:CDS 35.0%
!! CTCTTAGCATTAGCTCTAAA+TGG - chr5_4:7006701-7006720 None:intergenic 35.0%
CTTGTCTAATCTTAGTAGAC+AGG + chr5_4:7006823-7006842 Msa0833890:CDS 35.0%
TGAAGAGAAGCAAAAGATGA+AGG - chr5_4:7005357-7005376 None:intergenic 35.0%
! ATGATGATTCCAAAGGCTTT+TGG - chr5_4:7005437-7005456 None:intergenic 35.0%
!! TTGGTTGATGATGATTCCAA+AGG - chr5_4:7005444-7005463 None:intergenic 35.0%
! TATTGGTTGTTGAAACTGGT+TGG - chr5_4:7005463-7005482 None:intergenic 35.0%
!! GTTGTATTGGTTGTTGAAAC+TGG - chr5_4:7005467-7005486 None:intergenic 35.0%
GACTTAACCTAGCAAAACTA+TGG + chr5_4:7005529-7005548 Msa0833890:CDS 35.0%
TTTCTCCCGATGATATTTCT+TGG - chr5_4:7005639-7005658 None:intergenic 35.0%
GGTTGTTAGATATGGTGATT+TGG + chr5_4:7005731-7005750 Msa0833890:CDS 35.0%
TTTATAAGATCTCTCCGACA+AGG - chr5_4:7005832-7005851 None:intergenic 35.0%
!! AGGTAATCCAATTGATGATG+TGG - chr5_4:7005874-7005893 None:intergenic 35.0%
!! ATTACCTAAATGGGTTGATG+AGG + chr5_4:7005887-7005906 Msa0833890:CDS 35.0%
GATATTGTGATATCTCTTCG+TGG + chr5_4:7006008-7006027 Msa0833890:CDS 35.0%
AACTTCCACTTGTCTTGAAT+GGG + chr5_4:7006031-7006050 Msa0833890:CDS 35.0%
CATAAATCCACACTCAACTT+TGG - chr5_4:7006135-7006154 None:intergenic 35.0%
ATGAGCTTGTACAAGACAAA+AGG + chr5_4:7006152-7006171 Msa0833890:CDS 35.0%
TGAGCTTGTACAAGACAAAA+GGG + chr5_4:7006153-7006172 Msa0833890:CDS 35.0%
! CGCCTTATTGAACTTTACAA+AGG + chr5_4:7006221-7006240 Msa0833890:CDS 35.0%
CGCCTTTGTAAAGTTCAATA+AGG - chr5_4:7006226-7006245 None:intergenic 35.0%
GAATTAAGCATAACCGTTAC+CGG + chr5_4:7006248-7006267 Msa0833890:CDS 35.0%
!! CTTTTCAAGATGTTCTCCAA+AGG - chr5_4:7006390-7006409 None:intergenic 35.0%
TCCTCGCTTAAAAATATTCC+TGG - chr5_4:7006467-7006486 None:intergenic 35.0%
AAGAATTCCAAGGTTGTTAG+TGG + chr5_4:7006503-7006522 Msa0833890:CDS 35.0%
TAGTGGAGTTGTTGATATGT+TGG + chr5_4:7006520-7006539 Msa0833890:CDS 35.0%
! ACATTTAGTGGATGGATACA+TGG + chr5_4:7006664-7006683 Msa0833890:CDS 35.0%
!! CTCTTAGCATTAGCTCTAAA+TGG - chr5_4:7006701-7006720 None:intergenic 35.0%
CTTGTCTAATCTTAGTAGAC+AGG + chr5_4:7006823-7006842 Msa0833890:CDS 35.0%
AATTTGTGAAGGTTGTGAGC+AGG - chr5_4:7005282-7005301 None:intergenic 40.0%
! GAAGAATGGCATCTGAAACT+AGG - chr5_4:7005321-7005340 None:intergenic 40.0%
! TCTTGATAGCCAAAAGCCTT+TGG + chr5_4:7005425-7005444 Msa0833890:CDS 40.0%
! TCTTCAGCTGCTTTAATCTC+TGG - chr5_4:7005555-7005574 None:intergenic 40.0%
GAAATATCATCGGGAGAAAG+TGG + chr5_4:7005640-7005659 Msa0833890:CDS 40.0%
AGAAAGTGGAGGGAATATCA+TGG + chr5_4:7005654-7005673 Msa0833890:CDS 40.0%
CTGTATGCCACATCATCAAT+TGG + chr5_4:7005864-7005883 Msa0833890:CDS 40.0%
GAACTTCCACTTGTCTTGAA+TGG + chr5_4:7006030-7006049 Msa0833890:CDS 40.0%
CTCGGGTAAATCGACTAATT+GGG - chr5_4:7006072-7006091 None:intergenic 40.0%
! ACTCAACTTTGGGCTTTGAT+TGG - chr5_4:7006124-7006143 None:intergenic 40.0%
GAGCTTGTACAAGACAAAAG+GGG + chr5_4:7006154-7006173 Msa0833890:CDS 40.0%
CCAAATGAAAAAACAGCCAC+GGG - chr5_4:7006344-7006363 None:intergenic 40.0%
GCCAAATGAAAAAACAGCCA+CGG - chr5_4:7006345-7006364 None:intergenic 40.0%
!!! GTGGCTGTTTTTTCATTTGG+CGG + chr5_4:7006344-7006363 Msa0833890:CDS 40.0%
ACACACAAGACGTGATTACA+AGG + chr5_4:7006438-7006457 Msa0833890:CDS 40.0%
CACACAAGACGTGATTACAA+GGG + chr5_4:7006439-7006458 Msa0833890:CDS 40.0%
!! GCCAGGAATATTTTTAAGCG+AGG + chr5_4:7006463-7006482 Msa0833890:CDS 40.0%
AACAACTCCACTAACAACCT+TGG - chr5_4:7006513-7006532 None:intergenic 40.0%
TTGGAAGAGAACACTCCTTT+GGG + chr5_4:7006539-7006558 Msa0833890:CDS 40.0%
CCAACATGTGAATATCCCAA+AGG - chr5_4:7006557-7006576 None:intergenic 40.0%
!! CCTTTGGGATATTCACATGT+TGG + chr5_4:7006554-7006573 Msa0833890:CDS 40.0%
ACAACAAGCTATGTCAGCAT+CGG - chr5_4:7006624-7006643 None:intergenic 40.0%
!! AGCTTGTTGTCATGATCTAG+AGG + chr5_4:7006634-7006653 Msa0833890:CDS 40.0%
AATTTGTGAAGGTTGTGAGC+AGG - chr5_4:7005282-7005301 None:intergenic 40.0%
! GAAGAATGGCATCTGAAACT+AGG - chr5_4:7005321-7005340 None:intergenic 40.0%
! TCTTGATAGCCAAAAGCCTT+TGG + chr5_4:7005425-7005444 Msa0833890:CDS 40.0%
! TCTTCAGCTGCTTTAATCTC+TGG - chr5_4:7005555-7005574 None:intergenic 40.0%
GAAATATCATCGGGAGAAAG+TGG + chr5_4:7005640-7005659 Msa0833890:CDS 40.0%
AGAAAGTGGAGGGAATATCA+TGG + chr5_4:7005654-7005673 Msa0833890:CDS 40.0%
CTGTATGCCACATCATCAAT+TGG + chr5_4:7005864-7005883 Msa0833890:CDS 40.0%
GAACTTCCACTTGTCTTGAA+TGG + chr5_4:7006030-7006049 Msa0833890:CDS 40.0%
CTCGGGTAAATCGACTAATT+GGG - chr5_4:7006072-7006091 None:intergenic 40.0%
! ACTCAACTTTGGGCTTTGAT+TGG - chr5_4:7006124-7006143 None:intergenic 40.0%
GAGCTTGTACAAGACAAAAG+GGG + chr5_4:7006154-7006173 Msa0833890:CDS 40.0%
CCAAATGAAAAAACAGCCAC+GGG - chr5_4:7006344-7006363 None:intergenic 40.0%
GCCAAATGAAAAAACAGCCA+CGG - chr5_4:7006345-7006364 None:intergenic 40.0%
!!! GTGGCTGTTTTTTCATTTGG+CGG + chr5_4:7006344-7006363 Msa0833890:CDS 40.0%
ACACACAAGACGTGATTACA+AGG + chr5_4:7006438-7006457 Msa0833890:CDS 40.0%
CACACAAGACGTGATTACAA+GGG + chr5_4:7006439-7006458 Msa0833890:CDS 40.0%
!! GCCAGGAATATTTTTAAGCG+AGG + chr5_4:7006463-7006482 Msa0833890:CDS 40.0%
AACAACTCCACTAACAACCT+TGG - chr5_4:7006513-7006532 None:intergenic 40.0%
TTGGAAGAGAACACTCCTTT+GGG + chr5_4:7006539-7006558 Msa0833890:CDS 40.0%
CCAACATGTGAATATCCCAA+AGG - chr5_4:7006557-7006576 None:intergenic 40.0%
!! CCTTTGGGATATTCACATGT+TGG + chr5_4:7006554-7006573 Msa0833890:CDS 40.0%
ACAACAAGCTATGTCAGCAT+CGG - chr5_4:7006624-7006643 None:intergenic 40.0%
!! AGCTTGTTGTCATGATCTAG+AGG + chr5_4:7006634-7006653 Msa0833890:CDS 40.0%
!! TCTCTGGCCATAGTTTTGCT+AGG - chr5_4:7005539-7005558 None:intergenic 45.0%
ACAGCGTCTTCTTTCCAAGA+CGG + chr5_4:7005602-7005621 Msa0833890:CDS 45.0%
ATATCATCGGGAGAAAGTGG+AGG + chr5_4:7005643-7005662 Msa0833890:CDS 45.0%
TATCATCGGGAGAAAGTGGA+GGG + chr5_4:7005644-7005663 Msa0833890:CDS 45.0%
AATATCATGGCAGCAACGAC+TGG + chr5_4:7005667-7005686 Msa0833890:CDS 45.0%
CATATCTAACAACCTCTCGC+CGG - chr5_4:7005725-7005744 None:intergenic 45.0%
!! AAGGACACCTCTTGATGATG+GGG - chr5_4:7005813-7005832 None:intergenic 45.0%
! CAAGGACACCTCTTGATGAT+GGG - chr5_4:7005814-7005833 None:intergenic 45.0%
ACAAGGACACCTCTTGATGA+TGG - chr5_4:7005815-7005834 None:intergenic 45.0%
!! TCATCAAGAGGTGTCCTTGT+CGG + chr5_4:7005815-7005834 Msa0833890:CDS 45.0%
TGATGTGGCATACAGACTCT+TGG - chr5_4:7005859-7005878 None:intergenic 45.0%
!! ACCTAAATGGGTTGATGAGG+TGG + chr5_4:7005890-7005909 Msa0833890:CDS 45.0%
TTCAGCCCATTCAAGACAAG+TGG - chr5_4:7006039-7006058 None:intergenic 45.0%
CCTCGGGTAAATCGACTAAT+TGG - chr5_4:7006073-7006092 None:intergenic 45.0%
! CCAATTAGTCGATTTACCCG+AGG + chr5_4:7006070-7006089 Msa0833890:CDS 45.0%
TCAAAGCCCAAAGTTGAGTG+TGG + chr5_4:7006125-7006144 Msa0833890:CDS 45.0%
! CACTTCTTCAACAACGGACT+CGG - chr5_4:7006198-7006217 None:intergenic 45.0%
AATTTCCTCGGCCACCAATA+GGG - chr5_4:7006297-7006316 None:intergenic 45.0%
TAATTTCCTCGGCCACCAAT+AGG - chr5_4:7006298-7006317 None:intergenic 45.0%
AATGAAAAAACAGCCACGGG+TGG - chr5_4:7006341-7006360 None:intergenic 45.0%
!!! CCCGTGGCTGTTTTTTCATT+TGG + chr5_4:7006341-7006360 Msa0833890:CDS 45.0%
GTTGGAAGAGAACACTCCTT+TGG + chr5_4:7006538-7006557 Msa0833890:CDS 45.0%
CAACAAGCTATGTCAGCATC+GGG - chr5_4:7006623-7006642 None:intergenic 45.0%
TAGACAGGGATCCATGTCTA+TGG + chr5_4:7006838-7006857 Msa0833890:CDS 45.0%
ACAACAAGCAGCCATAGACA+TGG - chr5_4:7006852-7006871 None:intergenic 45.0%
!! TCTCTGGCCATAGTTTTGCT+AGG - chr5_4:7005539-7005558 None:intergenic 45.0%
ACAGCGTCTTCTTTCCAAGA+CGG + chr5_4:7005602-7005621 Msa0833890:CDS 45.0%
ATATCATCGGGAGAAAGTGG+AGG + chr5_4:7005643-7005662 Msa0833890:CDS 45.0%
TATCATCGGGAGAAAGTGGA+GGG + chr5_4:7005644-7005663 Msa0833890:CDS 45.0%
AATATCATGGCAGCAACGAC+TGG + chr5_4:7005667-7005686 Msa0833890:CDS 45.0%
CATATCTAACAACCTCTCGC+CGG - chr5_4:7005725-7005744 None:intergenic 45.0%
!! AAGGACACCTCTTGATGATG+GGG - chr5_4:7005813-7005832 None:intergenic 45.0%
! CAAGGACACCTCTTGATGAT+GGG - chr5_4:7005814-7005833 None:intergenic 45.0%
ACAAGGACACCTCTTGATGA+TGG - chr5_4:7005815-7005834 None:intergenic 45.0%
!! TCATCAAGAGGTGTCCTTGT+CGG + chr5_4:7005815-7005834 Msa0833890:CDS 45.0%
TGATGTGGCATACAGACTCT+TGG - chr5_4:7005859-7005878 None:intergenic 45.0%
!! ACCTAAATGGGTTGATGAGG+TGG + chr5_4:7005890-7005909 Msa0833890:CDS 45.0%
TTCAGCCCATTCAAGACAAG+TGG - chr5_4:7006039-7006058 None:intergenic 45.0%
CCTCGGGTAAATCGACTAAT+TGG - chr5_4:7006073-7006092 None:intergenic 45.0%
! CCAATTAGTCGATTTACCCG+AGG + chr5_4:7006070-7006089 Msa0833890:CDS 45.0%
TCAAAGCCCAAAGTTGAGTG+TGG + chr5_4:7006125-7006144 Msa0833890:CDS 45.0%
! CACTTCTTCAACAACGGACT+CGG - chr5_4:7006198-7006217 None:intergenic 45.0%
AATTTCCTCGGCCACCAATA+GGG - chr5_4:7006297-7006316 None:intergenic 45.0%
TAATTTCCTCGGCCACCAAT+AGG - chr5_4:7006298-7006317 None:intergenic 45.0%
AATGAAAAAACAGCCACGGG+TGG - chr5_4:7006341-7006360 None:intergenic 45.0%
!!! CCCGTGGCTGTTTTTTCATT+TGG + chr5_4:7006341-7006360 Msa0833890:CDS 45.0%
GTTGGAAGAGAACACTCCTT+TGG + chr5_4:7006538-7006557 Msa0833890:CDS 45.0%
CAACAAGCTATGTCAGCATC+GGG - chr5_4:7006623-7006642 None:intergenic 45.0%
TAGACAGGGATCCATGTCTA+TGG + chr5_4:7006838-7006857 Msa0833890:CDS 45.0%
ACAACAAGCAGCCATAGACA+TGG - chr5_4:7006852-7006871 None:intergenic 45.0%
GTGAAGGTTGTGAGCAGGTA+AGG - chr5_4:7005277-7005296 None:intergenic 50.0%
GAAGACGCTGTAAGCGTTTC+AGG - chr5_4:7005593-7005612 None:intergenic 50.0%
GAAGGGGATGTTAGATCCCT+TGG + chr5_4:7005689-7005708 Msa0833890:CDS 50.0%
ATCCCTTGGATGACAACCTC+CGG + chr5_4:7005703-7005722 Msa0833890:CDS 50.0%
CGGCGAGAGGTTGTTAGATA+TGG + chr5_4:7005723-7005742 Msa0833890:CDS 50.0%
GCTTCAGTTGTTGACATGGC+AGG - chr5_4:7005789-7005808 None:intergenic 50.0%
GGGTGCTTCAGTTGTTGACA+TGG - chr5_4:7005793-7005812 None:intergenic 50.0%
! TGAAGCACCCCATCATCAAG+AGG + chr5_4:7005803-7005822 Msa0833890:CDS 50.0%
GCCACCTCATCAACCCATTT+AGG - chr5_4:7005894-7005913 None:intergenic 50.0%
TGGGTCATCCAACCAAGATC+TGG - chr5_4:7005918-7005937 None:intergenic 50.0%
! CTTCAACAACGGACTCGGAT+AGG - chr5_4:7006193-7006212 None:intergenic 50.0%
GCGTCGCACTTCTTCAACAA+CGG - chr5_4:7006204-7006223 None:intergenic 50.0%
AAGGCTCTGTTACCAACACG+AGG - chr5_4:7006371-7006390 None:intergenic 50.0%
!! CGTGTTGGTAACAGAGCCTT+TGG + chr5_4:7006371-7006390 Msa0833890:CDS 50.0%
! TCAGCATCGGGCTTCAAGTA+AGG - chr5_4:7006611-7006630 None:intergenic 50.0%
GTGAAGGTTGTGAGCAGGTA+AGG - chr5_4:7005277-7005296 None:intergenic 50.0%
GAAGACGCTGTAAGCGTTTC+AGG - chr5_4:7005593-7005612 None:intergenic 50.0%
GAAGGGGATGTTAGATCCCT+TGG + chr5_4:7005689-7005708 Msa0833890:CDS 50.0%
ATCCCTTGGATGACAACCTC+CGG + chr5_4:7005703-7005722 Msa0833890:CDS 50.0%
CGGCGAGAGGTTGTTAGATA+TGG + chr5_4:7005723-7005742 Msa0833890:CDS 50.0%
GCTTCAGTTGTTGACATGGC+AGG - chr5_4:7005789-7005808 None:intergenic 50.0%
GGGTGCTTCAGTTGTTGACA+TGG - chr5_4:7005793-7005812 None:intergenic 50.0%
! TGAAGCACCCCATCATCAAG+AGG + chr5_4:7005803-7005822 Msa0833890:CDS 50.0%
GCCACCTCATCAACCCATTT+AGG - chr5_4:7005894-7005913 None:intergenic 50.0%
TGGGTCATCCAACCAAGATC+TGG - chr5_4:7005918-7005937 None:intergenic 50.0%
! CTTCAACAACGGACTCGGAT+AGG - chr5_4:7006193-7006212 None:intergenic 50.0%
GCGTCGCACTTCTTCAACAA+CGG - chr5_4:7006204-7006223 None:intergenic 50.0%
AAGGCTCTGTTACCAACACG+AGG - chr5_4:7006371-7006390 None:intergenic 50.0%
!! CGTGTTGGTAACAGAGCCTT+TGG + chr5_4:7006371-7006390 Msa0833890:CDS 50.0%
! TCAGCATCGGGCTTCAAGTA+AGG - chr5_4:7006611-7006630 None:intergenic 50.0%
! TGTAAGCGTTTCAGGTGGCG+GGG - chr5_4:7005585-7005604 None:intergenic 55.0%
! CTGTAAGCGTTTCAGGTGGC+GGG - chr5_4:7005586-7005605 None:intergenic 55.0%
! GCTGTAAGCGTTTCAGGTGG+CGG - chr5_4:7005587-7005606 None:intergenic 55.0%
GACGCTGTAAGCGTTTCAGG+TGG - chr5_4:7005590-7005609 None:intergenic 55.0%
GCGTCTTCTTTCCAAGACGG+CGG + chr5_4:7005605-7005624 Msa0833890:CDS 55.0%
TGGAGAATACTCCGCCGTCT+TGG - chr5_4:7005619-7005638 None:intergenic 55.0%
TCATGGCAGCAACGACTGGA+AGG + chr5_4:7005671-7005690 Msa0833890:CDS 55.0%
CATGGCAGCAACGACTGGAA+GGG + chr5_4:7005672-7005691 Msa0833890:CDS 55.0%
ATGGCAGCAACGACTGGAAG+GGG + chr5_4:7005673-7005692 Msa0833890:CDS 55.0%
ATCTAACAACCTCTCGCCGG+AGG - chr5_4:7005722-7005741 None:intergenic 55.0%
GATGAGGTGGCACCAGATCT+TGG + chr5_4:7005903-7005922 Msa0833890:CDS 55.0%
AGGTGGCACCAGATCTTGGT+TGG + chr5_4:7005907-7005926 Msa0833890:CDS 55.0%
! GATGACCCAGCGTTCTAGCT+GGG + chr5_4:7005929-7005948 Msa0833890:CDS 55.0%
TCCAACCCAGCTAGAACGCT+GGG - chr5_4:7005937-7005956 None:intergenic 55.0%
ATCCAACCCAGCTAGAACGC+TGG - chr5_4:7005938-7005957 None:intergenic 55.0%
AGTCTGAGTCTGAGCGTCCT+CGG - chr5_4:7006090-7006109 None:intergenic 55.0%
CAGACTCAGACTCAGGCACA+AGG + chr5_4:7006098-7006117 Msa0833890:CDS 55.0%
GCCGAGGAAATTAGCACGTG+CGG + chr5_4:7006305-7006324 Msa0833890:CDS 55.0%
CCCGCACGTGCTAATTTCCT+CGG - chr5_4:7006309-7006328 None:intergenic 55.0%
CCGAGGAAATTAGCACGTGC+GGG + chr5_4:7006306-7006325 Msa0833890:CDS 55.0%
! TCATTTGGCGGACCTCGTGT+TGG + chr5_4:7006356-7006375 Msa0833890:CDS 55.0%
!! GACGTGATTACAAGGGTGCC+AGG + chr5_4:7006446-7006465 Msa0833890:CDS 55.0%
! TGTAAGCGTTTCAGGTGGCG+GGG - chr5_4:7005585-7005604 None:intergenic 55.0%
! CTGTAAGCGTTTCAGGTGGC+GGG - chr5_4:7005586-7005605 None:intergenic 55.0%
! GCTGTAAGCGTTTCAGGTGG+CGG - chr5_4:7005587-7005606 None:intergenic 55.0%
GACGCTGTAAGCGTTTCAGG+TGG - chr5_4:7005590-7005609 None:intergenic 55.0%
GCGTCTTCTTTCCAAGACGG+CGG + chr5_4:7005605-7005624 Msa0833890:CDS 55.0%
TGGAGAATACTCCGCCGTCT+TGG - chr5_4:7005619-7005638 None:intergenic 55.0%
TCATGGCAGCAACGACTGGA+AGG + chr5_4:7005671-7005690 Msa0833890:CDS 55.0%
CATGGCAGCAACGACTGGAA+GGG + chr5_4:7005672-7005691 Msa0833890:CDS 55.0%
ATGGCAGCAACGACTGGAAG+GGG + chr5_4:7005673-7005692 Msa0833890:CDS 55.0%
ATCTAACAACCTCTCGCCGG+AGG - chr5_4:7005722-7005741 None:intergenic 55.0%
GATGAGGTGGCACCAGATCT+TGG + chr5_4:7005903-7005922 Msa0833890:CDS 55.0%
AGGTGGCACCAGATCTTGGT+TGG + chr5_4:7005907-7005926 Msa0833890:CDS 55.0%
! GATGACCCAGCGTTCTAGCT+GGG + chr5_4:7005929-7005948 Msa0833890:CDS 55.0%
TCCAACCCAGCTAGAACGCT+GGG - chr5_4:7005937-7005956 None:intergenic 55.0%
ATCCAACCCAGCTAGAACGC+TGG - chr5_4:7005938-7005957 None:intergenic 55.0%
AGTCTGAGTCTGAGCGTCCT+CGG - chr5_4:7006090-7006109 None:intergenic 55.0%
CAGACTCAGACTCAGGCACA+AGG + chr5_4:7006098-7006117 Msa0833890:CDS 55.0%
GCCGAGGAAATTAGCACGTG+CGG + chr5_4:7006305-7006324 Msa0833890:CDS 55.0%
CCCGCACGTGCTAATTTCCT+CGG - chr5_4:7006309-7006328 None:intergenic 55.0%
CCGAGGAAATTAGCACGTGC+GGG + chr5_4:7006306-7006325 Msa0833890:CDS 55.0%
! TCATTTGGCGGACCTCGTGT+TGG + chr5_4:7006356-7006375 Msa0833890:CDS 55.0%
!! GACGTGATTACAAGGGTGCC+AGG + chr5_4:7006446-7006465 Msa0833890:CDS 55.0%
!! TAAGCGTTTCAGGTGGCGGG+GGG - chr5_4:7005583-7005602 None:intergenic 60.0%
! GTAAGCGTTTCAGGTGGCGG+GGG - chr5_4:7005584-7005603 None:intergenic 60.0%
CGCCGGAGGTTGTCATCCAA+GGG - chr5_4:7005708-7005727 None:intergenic 60.0%
TCGCCGGAGGTTGTCATCCA+AGG - chr5_4:7005709-7005728 None:intergenic 60.0%
GGATGACCCAGCGTTCTAGC+TGG + chr5_4:7005928-7005947 Msa0833890:CDS 60.0%
! ACCCAGCGTTCTAGCTGGGT+TGG + chr5_4:7005933-7005952 Msa0833890:CDS 60.0%
GTCTGAGTCTGAGCGTCCTC+GGG - chr5_4:7006089-7006108 None:intergenic 60.0%
GGACGCTCAGACTCAGACTC+AGG + chr5_4:7006091-7006110 Msa0833890:CDS 60.0%
ACCGTTACCGGCCATAGCCT+TGG + chr5_4:7006260-7006279 Msa0833890:CDS 60.0%
GCCAAGGCTATGGCCGGTAA+CGG - chr5_4:7006264-7006283 None:intergenic 60.0%
CTAGTGTCGCGCCAAGGCTA+TGG - chr5_4:7006274-7006293 None:intergenic 60.0%
! ATAGGGCTAGTGTCGCGCCA+AGG - chr5_4:7006280-7006299 None:intergenic 60.0%
TGGCGCGACACTAGCCCTAT+TGG + chr5_4:7006280-7006299 Msa0833890:CDS 60.0%
CGCGACACTAGCCCTATTGG+TGG + chr5_4:7006283-7006302 Msa0833890:CDS 60.0%
! ACTAGCCCTATTGGTGGCCG+AGG + chr5_4:7006289-7006308 Msa0833890:CDS 60.0%
!! TAAGCGTTTCAGGTGGCGGG+GGG - chr5_4:7005583-7005602 None:intergenic 60.0%
! GTAAGCGTTTCAGGTGGCGG+GGG - chr5_4:7005584-7005603 None:intergenic 60.0%
CGCCGGAGGTTGTCATCCAA+GGG - chr5_4:7005708-7005727 None:intergenic 60.0%
TCGCCGGAGGTTGTCATCCA+AGG - chr5_4:7005709-7005728 None:intergenic 60.0%
GGATGACCCAGCGTTCTAGC+TGG + chr5_4:7005928-7005947 Msa0833890:CDS 60.0%
! ACCCAGCGTTCTAGCTGGGT+TGG + chr5_4:7005933-7005952 Msa0833890:CDS 60.0%
GTCTGAGTCTGAGCGTCCTC+GGG - chr5_4:7006089-7006108 None:intergenic 60.0%
GGACGCTCAGACTCAGACTC+AGG + chr5_4:7006091-7006110 Msa0833890:CDS 60.0%
ACCGTTACCGGCCATAGCCT+TGG + chr5_4:7006260-7006279 Msa0833890:CDS 60.0%
GCCAAGGCTATGGCCGGTAA+CGG - chr5_4:7006264-7006283 None:intergenic 60.0%
CTAGTGTCGCGCCAAGGCTA+TGG - chr5_4:7006274-7006293 None:intergenic 60.0%
! ATAGGGCTAGTGTCGCGCCA+AGG - chr5_4:7006280-7006299 None:intergenic 60.0%
TGGCGCGACACTAGCCCTAT+TGG + chr5_4:7006280-7006299 Msa0833890:CDS 60.0%
CGCGACACTAGCCCTATTGG+TGG + chr5_4:7006283-7006302 Msa0833890:CDS 60.0%
! ACTAGCCCTATTGGTGGCCG+AGG + chr5_4:7006289-7006308 Msa0833890:CDS 60.0%
GGATGACAACCTCCGGCGAG+AGG + chr5_4:7005710-7005729 Msa0833890:CDS 65.0%
TGTCGCGCCAAGGCTATGGC+CGG - chr5_4:7006270-7006289 None:intergenic 65.0%
ACAGCCACGGGTGGCACGTT+TGG - chr5_4:7006332-7006351 None:intergenic 65.0%
GGATGACAACCTCCGGCGAG+AGG + chr5_4:7005710-7005729 Msa0833890:CDS 65.0%
TGTCGCGCCAAGGCTATGGC+CGG - chr5_4:7006270-7006289 None:intergenic 65.0%
ACAGCCACGGGTGGCACGTT+TGG - chr5_4:7006332-7006351 None:intergenic 65.0%
CGGGCCAAACGTGCCACCCG+TGG + chr5_4:7006325-7006344 Msa0833890:CDS 75.0%
CGGGCCAAACGTGCCACCCG+TGG + chr5_4:7006325-7006344 Msa0833890:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 7005252 7006892 7005252 ID=Msa0833890;Name=Msa0833890
chr5_4 mRNA 7005252 7006892 7005252 ID=Msa0833890-mRNA-1;Parent=Msa0833890;Name=Msa0833890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|546
chr5_4 exon 7005252 7006892 7005252 ID=Msa0833890-mRNA-1:exon:3072;Parent=Msa0833890-mRNA-1
chr5_4 CDS 7005252 7006892 7005252 ID=Msa0833890-mRNA-1:cds;Parent=Msa0833890-mRNA-1
Gene Sequence

>Msa0833890

ATGATGCAATTCAGCTCAAGTACCTTACCTGCTCACAACCTTCACAAATTTCAAGCACTAAGATGTCCTAGTTTCAGATGCCATTCTTCTTCCATTAAACAACCTTCATCTTTTGCTTCTCTTCAAACCAATAACAACTCATCTAGGTTACATCTCTCAAATCTTGACAAGTTTCTTGATAGCCAAAAGCCTTTGGAATCATCATCAACCAACCAGTTTCAACAACCAATACAACCTATCCAAAAAAGTGACAAAAAAGGAAAAAACTTTCTTGAAGGACTTAACCTAGCAAAACTATGGCCAGAGATTAAAGCAGCTGAAGAAATCTCCCCCCGCCACCTGAAACGCTTACAGCGTCTTCTTTCCAAGACGGCGGAGTATTCTCCAAGAAATATCATCGGGAGAAAGTGGAGGGAATATCATGGCAGCAACGACTGGAAGGGGATGTTAGATCCCTTGGATGACAACCTCCGGCGAGAGGTTGTTAGATATGGTGATTTGGTTCAAGCTGCGTATCAAGCTTTTCATGCTGATCCTGCCATGTCAACAACTGAAGCACCCCATCATCAAGAGGTGTCCTTGTCGGAGAGATCTTATAAAGTAACCAAGAGTCTGTATGCCACATCATCAATTGGATTACCTAAATGGGTTGATGAGGTGGCACCAGATCTTGGTTGGATGACCCAGCGTTCTAGCTGGGTTGGATATGTTGCAGTTTGCGACGATAAAAGAGAGATTGCAAGAATGGGACGAAGAGATATTGTGATATCTCTTCGTGGAACTTCCACTTGTCTTGAATGGGCTGAAAATATGAGAGCCCAATTAGTCGATTTACCCGAGGACGCTCAGACTCAGACTCAGGCACAAGGCCAATCAAAGCCCAAAGTTGAGTGTGGATTTATGAGCTTGTACAAGACAAAAGGGGCTCATGTGCAAAGCCTATCCGAGTCCGTTGTTGAAGAAGTGCGACGCCTTATTGAACTTTACAAAGGCGAAGAATTAAGCATAACCGTTACCGGCCATAGCCTTGGCGCGACACTAGCCCTATTGGTGGCCGAGGAAATTAGCACGTGCGGGCCAAACGTGCCACCCGTGGCTGTTTTTTCATTTGGCGGACCTCGTGTTGGTAACAGAGCCTTTGGAGAACATCTTGAAAAGAAAAACGTGAAAATTCTTAGAATAGTGAACACACAAGACGTGATTACAAGGGTGCCAGGAATATTTTTAAGCGAGGAGCTTGAAGAAAAAATTAAGAATTCCAAGGTTGTTAGTGGAGTTGTTGATATGTTGGAAGAGAACACTCCTTTGGGATATTCACATGTTGGAACTGAATTACGTGTTAATACTAAGATGTCACCTTACTTGAAGCCCGATGCTGACATAGCTTGTTGTCATGATCTAGAGGCTTATTTACATTTAGTGGATGGATACATGGCTTCTAATTGTCCATTTAGAGCTAATGCTAAGAGAAGTTTAGCTAGATTAATGCAAGATCAAAGTGCTAATGTAAAAAAGTTGTATACTAGTAAGGCTAAAGGCTTGTCTGTTAATCTTAATAGACAAGGATCAAACTTGTCTAATCTTAGTAGACAGGGATCCATGTCTATGGCTGCTTGTTGTCCTAGTCCATCATCTTCATGA

Protein sequence

>Msa0833890

MMQFSSSTLPAHNLHKFQALRCPSFRCHSSSIKQPSSFASLQTNNNSSRLHLSNLDKFLDSQKPLESSSTNQFQQPIQPIQKSDKKGKNFLEGLNLAKLWPEIKAAEEISPRHLKRLQRLLSKTAEYSPRNIIGRKWREYHGSNDWKGMLDPLDDNLRREVVRYGDLVQAAYQAFHADPAMSTTEAPHHQEVSLSERSYKVTKSLYATSSIGLPKWVDEVAPDLGWMTQRSSWVGYVAVCDDKREIARMGRRDIVISLRGTSTCLEWAENMRAQLVDLPEDAQTQTQAQGQSKPKVECGFMSLYKTKGAHVQSLSESVVEEVRRLIELYKGEELSITVTGHSLGATLALLVAEEISTCGPNVPPVAVFSFGGPRVGNRAFGEHLEKKNVKILRIVNTQDVITRVPGIFLSEELEEKIKNSKVVSGVVDMLEENTPLGYSHVGTELRVNTKMSPYLKPDADIACCHDLEAYLHLVDGYMASNCPFRANAKRSLARLMQDQSANVKKLYTSKAKGLSVNLNRQGSNLSNLSRQGSMSMAACCPSPSSS*