Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834180 | XP_003611369.1 | 97.445 | 548 | 12 | 2 | 1 | 546 | 1 | 548 | 0.0 | 1106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834180 | sp|O23522|PLA14_ARATH | 55.179 | 531 | 198 | 10 | 25 | 546 | 18 | 517 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834180 | G7JXH0 | 97.445 | 548 | 12 | 2 | 1 | 546 | 1 | 548 | 0.0 | 1106 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051050 | Msa0834180 | 0.832866 | 7.401117e-56 | -8.615850e-47 |
| Msa0101240 | Msa0834180 | 0.831833 | 1.334394e-55 | -8.615850e-47 |
| Msa0615290 | Msa0834180 | 0.810041 | 1.403712e-50 | -8.615850e-47 |
| Msa0754770 | Msa0834180 | 0.968452 | 1.070149e-128 | -8.615850e-47 |
| Msa0754810 | Msa0834180 | 0.826941 | 2.058124e-54 | -8.615850e-47 |
| Msa0758250 | Msa0834180 | 0.802137 | 6.471133e-49 | -8.615850e-47 |
| Msa0796630 | Msa0834180 | 0.972083 | 3.435988e-134 | -8.615850e-47 |
| Msa0798010 | Msa0834180 | 0.801258 | 9.802899e-49 | -8.615850e-47 |
| Msa0823540 | Msa0834180 | 0.801465 | 8.889596e-49 | -8.615850e-47 |
| Msa0833890 | Msa0834180 | 0.996188 | 1.943805e-224 | -8.615850e-47 |
| Msa0834180 | Msa0837870 | 0.801578 | 8.429888e-49 | -8.615850e-47 |
| Msa0834180 | Msa0865970 | 0.803735 | 3.024911e-49 | -8.615850e-47 |
| Msa0834180 | Msa0866070 | 0.806658 | 7.391041e-50 | -8.615850e-47 |
| Msa0834180 | Msa0899970 | 0.816791 | 4.609565e-52 | -8.615850e-47 |
| Msa0834180 | Msa0965290 | 0.804584 | 2.013994e-49 | -8.615850e-47 |
| Msa0834180 | Msa0999680 | 0.802315 | 5.948143e-49 | -8.615850e-47 |
| Msa0834180 | Msa1029870 | 0.803906 | 2.787592e-49 | -8.615850e-47 |
| Msa0834180 | Msa1043120 | 0.801062 | 1.074694e-48 | -8.615850e-47 |
| Msa0834180 | Msa1114780 | 0.824880 | 6.350471e-54 | -8.615850e-47 |
| Msa0834180 | Msa1259860 | 0.801013 | 1.100074e-48 | -8.615850e-47 |
| Msa0834180 | Msa1337310 | 0.800550 | 1.367533e-48 | -8.615850e-47 |
| Msa0834180 | Msa1360420 | 0.847364 | 1.211893e-59 | -8.615850e-47 |
| Msa0834180 | Msa1388090 | 0.996902 | 7.023227e-234 | -8.615850e-47 |
| Msa0834180 | Msa1424630 | 0.812162 | 4.870281e-51 | -8.615850e-47 |
| Msa0501410 | Msa0834180 | 0.813651 | 2.298072e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834180 | MtrunA17_Chr5g0399641 | 97.445 | 548 | 12 | 2 | 1 | 546 | 1 | 548 | 0.0 | 1106 |
| Msa0834180 | MtrunA17_Chr4g0055691 | 65.766 | 555 | 137 | 9 | 6 | 544 | 4 | 521 | 0.0 | 717 |
| Msa0834180 | MtrunA17_Chr7g0250561 | 46.907 | 388 | 178 | 8 | 129 | 492 | 65 | 448 | 2.65e-119 | 359 |
| Msa0834180 | MtrunA17_Chr7g0250611 | 45.553 | 371 | 167 | 9 | 133 | 492 | 75 | 421 | 4.77e-109 | 332 |
| Msa0834180 | MtrunA17_Chr4g0039301 | 38.281 | 384 | 201 | 7 | 128 | 493 | 95 | 460 | 1.75e-84 | 272 |
| Msa0834180 | MtrunA17_Chr7g0260671 | 39.474 | 380 | 195 | 11 | 133 | 493 | 74 | 437 | 1.49e-80 | 261 |
| Msa0834180 | MtrunA17_Chr7g0260681 | 39.394 | 363 | 185 | 12 | 133 | 476 | 74 | 420 | 1.76e-76 | 248 |
| Msa0834180 | MtrunA17_Chr2g0283561 | 35.156 | 384 | 192 | 9 | 133 | 493 | 39 | 388 | 1.32e-63 | 214 |
| Msa0834180 | MtrunA17_Chr7g0214711 | 32.683 | 410 | 215 | 13 | 109 | 500 | 80 | 446 | 2.58e-57 | 199 |
| Msa0834180 | MtrunA17_Chr4g0046001 | 33.075 | 387 | 195 | 11 | 133 | 495 | 13 | 359 | 4.84e-52 | 182 |
| Msa0834180 | MtrunA17_Chr4g0046011 | 33.333 | 387 | 194 | 12 | 133 | 495 | 4 | 350 | 2.55e-51 | 180 |
| Msa0834180 | MtrunA17_Chr4g0041311 | 29.250 | 400 | 217 | 10 | 129 | 493 | 24 | 392 | 5.51e-49 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834180 | AT4G16820.1 | 55.179 | 531 | 198 | 10 | 25 | 546 | 18 | 517 | 0.0 | 560 |
| Msa0834180 | AT2G44810.2 | 50.136 | 369 | 170 | 7 | 133 | 494 | 86 | 447 | 4.61e-123 | 369 |
| Msa0834180 | AT2G44810.1 | 50.413 | 363 | 166 | 7 | 139 | 494 | 2 | 357 | 1.25e-120 | 360 |
| Msa0834180 | AT1G30370.1 | 38.015 | 413 | 219 | 10 | 124 | 517 | 105 | 499 | 2.57e-86 | 277 |
| Msa0834180 | AT1G51440.1 | 41.463 | 369 | 172 | 10 | 137 | 481 | 91 | 439 | 1.97e-83 | 269 |
| Msa0834180 | AT1G06800.1 | 39.633 | 381 | 187 | 10 | 137 | 493 | 89 | 450 | 4.17e-79 | 258 |
| Msa0834180 | AT2G30550.1 | 39.227 | 362 | 186 | 7 | 137 | 479 | 105 | 451 | 7.44e-79 | 255 |
| Msa0834180 | AT1G06800.2 | 40.385 | 364 | 174 | 10 | 137 | 476 | 89 | 433 | 9.98e-79 | 254 |
| Msa0834180 | AT2G30550.2 | 38.830 | 376 | 196 | 8 | 137 | 493 | 105 | 465 | 6.53e-78 | 255 |
| Msa0834180 | AT2G31690.1 | 35.813 | 363 | 184 | 11 | 133 | 475 | 88 | 421 | 4.64e-65 | 220 |
| Msa0834180 | AT1G05800.1 | 35.833 | 360 | 185 | 9 | 133 | 475 | 80 | 410 | 6.84e-64 | 216 |
| Msa0834180 | AT4G18550.1 | 32.771 | 415 | 211 | 11 | 133 | 515 | 19 | 397 | 3.62e-59 | 202 |
| Msa0834180 | AT4G18550.2 | 32.771 | 415 | 211 | 11 | 133 | 515 | 36 | 414 | 4.94e-59 | 202 |
| Msa0834180 | AT1G06250.1 | 31.959 | 388 | 200 | 10 | 133 | 493 | 5 | 355 | 5.59e-54 | 189 |
| Msa0834180 | AT2G42690.1 | 32.468 | 385 | 204 | 8 | 137 | 493 | 8 | 364 | 2.86e-51 | 181 |
| Msa0834180 | AT4G18550.3 | 36.458 | 288 | 152 | 8 | 133 | 397 | 36 | 315 | 9.28e-46 | 164 |
| Msa0834180 | AT1G06250.2 | 30.797 | 276 | 140 | 7 | 234 | 493 | 1 | 241 | 4.80e-32 | 125 |
Find 134 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAATTGGATTACCTAAA+TGG | 0.127660 | 5_4:-7192891 | Msa0834180:CDS |
| CCTCGGGTAAATCGACTAAT+TGG | 0.206931 | 5_4:+7192698 | None:intergenic |
| GAAGACGCTGTAAGCGTTTC+AGG | 0.238955 | 5_4:+7193178 | None:intergenic |
| TAACCTAGATGAGTTGTTAT+TGG | 0.251262 | 5_4:+7193389 | None:intergenic |
| CTCTTAGCATTAGCTCTAAA+TGG | 0.258178 | 5_4:+7192070 | None:intergenic |
| CGCCTTTGTAAAGTTCAATA+AGG | 0.276950 | 5_4:+7192545 | None:intergenic |
| AAAAGATGAAGGTTGTTTAA+TGG | 0.278707 | 5_4:+7193425 | None:intergenic |
| TTTCTCCCGATGATATTTCT+TGG | 0.282496 | 5_4:+7193132 | None:intergenic |
| AGAGGCTTATTTACATTTAG+TGG | 0.289753 | 5_4:-7192116 | Msa0834180:CDS |
| ATGATGATTCCAAAGGCTTT+TGG | 0.306541 | 5_4:+7193334 | None:intergenic |
| GCCACCTCATCAACCCATTT+AGG | 0.326253 | 5_4:+7192877 | None:intergenic |
| GTTGTATTGGTTGTTGAAAC+TGG | 0.332759 | 5_4:+7193304 | None:intergenic |
| ACTCAACTTTGGGCTTTGAT+TGG | 0.339758 | 5_4:+7192647 | None:intergenic |
| ACAGCCACGGGTGGCACGTT+TGG | 0.344135 | 5_4:+7192439 | None:intergenic |
| TAATTTCCTCGGCCACCAAT+AGG | 0.366166 | 5_4:+7192473 | None:intergenic |
| CGGCGAGAGGTTGTTAGATA+TGG | 0.368122 | 5_4:-7193045 | Msa0834180:CDS |
| CATAAATCCACACTCAACTT+TGG | 0.371336 | 5_4:+7192636 | None:intergenic |
| CTGTAAGCGTTTCAGGTGGC+GGG | 0.378709 | 5_4:+7193185 | None:intergenic |
| TCTTCAGCTGCTTTAATCTC+TGG | 0.381476 | 5_4:+7193216 | None:intergenic |
| AACTTCCACTTGTCTTGAAT+GGG | 0.386150 | 5_4:-7192737 | Msa0834180:CDS |
| GTTGGAAGAGAACACTCCTT+TGG | 0.394244 | 5_4:-7192230 | Msa0834180:CDS |
| CGTGTTGGTAACAGAGCCTT+TGG | 0.394565 | 5_4:-7192397 | Msa0834180:CDS |
| TAAAAGAGAGATTGCAAGAA+TGG | 0.395214 | 5_4:-7192791 | Msa0834180:CDS |
| ATAAATCCACACTCAACTTT+GGG | 0.396883 | 5_4:+7192637 | None:intergenic |
| TCTTGATAGCCAAAAGCCTT+TGG | 0.405866 | 5_4:-7193343 | Msa0834180:CDS |
| GGATGACCCAGCGTTCTAGC+TGG | 0.407435 | 5_4:-7192840 | Msa0834180:CDS |
| ATCAATTGGATTACCTAAAT+GGG | 0.408997 | 5_4:-7192890 | Msa0834180:CDS |
| GGTTGTTAGATATGGTGATT+TGG | 0.409569 | 5_4:-7193037 | Msa0834180:CDS |
| GAACTTCCACTTGTCTTGAA+TGG | 0.412888 | 5_4:-7192738 | Msa0834180:CDS |
| GACTTAACCTAGCAAAACTA+TGG | 0.417487 | 5_4:-7193239 | Msa0834180:CDS |
| CTGTATGCCACATCATCAAT+TGG | 0.418121 | 5_4:-7192904 | Msa0834180:CDS |
| AATTTCCTCGGCCACCAATA+GGG | 0.421437 | 5_4:+7192474 | None:intergenic |
| ATGAGCTTGTACAAGACAAA+AGG | 0.423174 | 5_4:-7192616 | Msa0834180:CDS |
| TTGGAAGAGAACACTCCTTT+GGG | 0.425192 | 5_4:-7192229 | Msa0834180:CDS |
| GAATTAAGCATAACCGTTAC+CGG | 0.425326 | 5_4:-7192520 | Msa0834180:CDS |
| AAGAATTCCAAGGTTGTTAG+TGG | 0.426321 | 5_4:-7192265 | Msa0834180:CDS |
| ACATTTAGTGGATGGATACA+TGG | 0.441165 | 5_4:-7192104 | Msa0834180:CDS |
| AAACCAATAACAACTCATCT+AGG | 0.443716 | 5_4:-7193392 | Msa0834180:CDS |
| AATATCATGGCAGCAACGAC+TGG | 0.446528 | 5_4:-7193101 | Msa0834180:CDS |
| GATGAGGTGGCACCAGATCT+TGG | 0.447657 | 5_4:-7192865 | Msa0834180:CDS |
| CCCGCACGTGCTAATTTCCT+CGG | 0.448005 | 5_4:+7192462 | None:intergenic |
| TAGACAGGGATCCATGTCTA+TGG | 0.450095 | 5_4:-7191930 | Msa0834180:CDS |
| GTTGTTTAATGGAAGAAGAA+TGG | 0.450283 | 5_4:+7193436 | None:intergenic |
| CACTTCTTCAACAACGGACT+CGG | 0.454486 | 5_4:+7192573 | None:intergenic |
| GTGAAGGTTGTGAGCAGGTA+AGG | 0.457213 | 5_4:+7193494 | None:intergenic |
| GTAAGCGTTTCAGGTGGCGG+GGG | 0.458362 | 5_4:+7193187 | None:intergenic |
| CTTGTCTAATCTTAGTAGAC+AGG | 0.459042 | 5_4:-7191945 | Msa0834180:CDS |
| CTAGTGTCGCGCCAAGGCTA+TGG | 0.467757 | 5_4:+7192497 | None:intergenic |
| GCTGTAAGCGTTTCAGGTGG+CGG | 0.475077 | 5_4:+7193184 | None:intergenic |
| GTCTGAGTCTGAGCGTCCTC+GGG | 0.477426 | 5_4:+7192682 | None:intergenic |
| TCGCCGGAGGTTGTCATCCA+AGG | 0.480124 | 5_4:+7193062 | None:intergenic |
| GAAGGGGATGTTAGATCCCT+TGG | 0.480349 | 5_4:-7193079 | Msa0834180:CDS |
| TGGGTCATCCAACCAAGATC+TGG | 0.480411 | 5_4:+7192853 | None:intergenic |
| TGAAGAGAAGCAAAAGATGA+AGG | 0.480894 | 5_4:+7193414 | None:intergenic |
| GCTTCAGTTGTTGACATGGC+AGG | 0.485069 | 5_4:+7192982 | None:intergenic |
| TGGAGAATACTCCGCCGTCT+TGG | 0.486287 | 5_4:+7193152 | None:intergenic |
| TATTGGTTGTTGAAACTGGT+TGG | 0.487668 | 5_4:+7193308 | None:intergenic |
| AGTCTGAGTCTGAGCGTCCT+CGG | 0.490474 | 5_4:+7192681 | None:intergenic |
| AAAAGAGAGATTGCAAGAAT+GGG | 0.490721 | 5_4:-7192790 | Msa0834180:CDS |
| ACACACAAGACGTGATTACA+AGG | 0.492272 | 5_4:-7192330 | Msa0834180:CDS |
| CTCGGGTAAATCGACTAATT+GGG | 0.499666 | 5_4:+7192699 | None:intergenic |
| AACAACTCCACTAACAACCT+TGG | 0.499945 | 5_4:+7192258 | None:intergenic |
| ACAAGGACACCTCTTGATGA+TGG | 0.502751 | 5_4:+7192956 | None:intergenic |
| TGAGCTTGTACAAGACAAAA+GGG | 0.503559 | 5_4:-7192615 | Msa0834180:CDS |
| CCTTTGGGATATTCACATGT+TGG | 0.504000 | 5_4:-7192214 | Msa0834180:CDS |
| GAAATATCATCGGGAGAAAG+TGG | 0.505201 | 5_4:-7193128 | Msa0834180:CDS |
| CTTCAACAACGGACTCGGAT+AGG | 0.508893 | 5_4:+7192578 | None:intergenic |
| TCAGCATCGGGCTTCAAGTA+AGG | 0.510052 | 5_4:+7192160 | None:intergenic |
| CAACAAGCTATGTCAGCATC+GGG | 0.515189 | 5_4:+7192148 | None:intergenic |
| GCTTATTTACATTTAGTGGA+TGG | 0.516513 | 5_4:-7192112 | Msa0834180:CDS |
| GATGACCCAGCGTTCTAGCT+GGG | 0.518537 | 5_4:-7192839 | Msa0834180:CDS |
| GAAGAATGGCATCTGAAACT+AGG | 0.523536 | 5_4:+7193450 | None:intergenic |
| CAAGGACACCTCTTGATGAT+GGG | 0.525696 | 5_4:+7192957 | None:intergenic |
| TCATCAAGAGGTGTCCTTGT+CGG | 0.525857 | 5_4:-7192953 | Msa0834180:CDS |
| TTGTATACTAGTAAGGCTAA+AGG | 0.526986 | 5_4:-7192001 | Msa0834180:CDS |
| ATCCCTTGGATGACAACCTC+CGG | 0.528647 | 5_4:-7193065 | Msa0834180:CDS |
| ATCCAACCCAGCTAGAACGC+TGG | 0.529696 | 5_4:+7192833 | None:intergenic |
| GACGTGATTACAAGGGTGCC+AGG | 0.535150 | 5_4:-7192322 | Msa0834180:CDS |
| CGCGACACTAGCCCTATTGG+TGG | 0.536052 | 5_4:-7192485 | Msa0834180:CDS |
| TAGTGGAGTTGTTGATATGT+TGG | 0.537325 | 5_4:-7192248 | Msa0834180:CDS |
| TGTAAGCGTTTCAGGTGGCG+GGG | 0.538613 | 5_4:+7193186 | None:intergenic |
| ACCGTTACCGGCCATAGCCT+TGG | 0.539736 | 5_4:-7192508 | Msa0834180:CDS |
| ATGGCAGCAACGACTGGAAG+GGG | 0.541567 | 5_4:-7193095 | Msa0834180:CDS |
| ACCTAAATGGGTTGATGAGG+TGG | 0.548455 | 5_4:-7192878 | Msa0834180:CDS |
| ACTAGCCCTATTGGTGGCCG+AGG | 0.548502 | 5_4:-7192479 | Msa0834180:CDS |
| ATTCATGAAGATGATGGACT+AGG | 0.548753 | 5_4:+7191896 | None:intergenic |
| AGGTAATCCAATTGATGATG+TGG | 0.548802 | 5_4:+7192897 | None:intergenic |
| GATATTGTGATATCTCTTCG+TGG | 0.549518 | 5_4:-7192760 | Msa0834180:CDS |
| TTCAGCCCATTCAAGACAAG+TGG | 0.553127 | 5_4:+7192732 | None:intergenic |
| GGACGCTCAGACTCAGACTC+AGG | 0.556991 | 5_4:-7192677 | Msa0834180:CDS |
| CGCCGGAGGTTGTCATCCAA+GGG | 0.557417 | 5_4:+7193063 | None:intergenic |
| ACAACAAGCTATGTCAGCAT+CGG | 0.563181 | 5_4:+7192147 | None:intergenic |
| TCATGGCAGCAACGACTGGA+AGG | 0.564182 | 5_4:-7193097 | Msa0834180:CDS |
| CGCCTTATTGAACTTTACAA+AGG | 0.564214 | 5_4:-7192547 | Msa0834180:CDS |
| ATTCTCCAAGAAATATCATC+GGG | 0.566867 | 5_4:-7193137 | Msa0834180:CDS |
| AGCTTGTTGTCATGATCTAG+AGG | 0.571065 | 5_4:-7192134 | Msa0834180:CDS |
| TGATGTGGCATACAGACTCT+TGG | 0.573169 | 5_4:+7192912 | None:intergenic |
| TAAGCGTTTCAGGTGGCGGG+GGG | 0.576225 | 5_4:+7193188 | None:intergenic |
| GGGTGCTTCAGTTGTTGACA+TGG | 0.576279 | 5_4:+7192978 | None:intergenic |
| CCGAGGAAATTAGCACGTGC+GGG | 0.576932 | 5_4:-7192462 | Msa0834180:CDS |
| TCATTTGGCGGACCTCGTGT+TGG | 0.577348 | 5_4:-7192412 | Msa0834180:CDS |
| CATATCTAACAACCTCTCGC+CGG | 0.581786 | 5_4:+7193046 | None:intergenic |
| CATGGCAGCAACGACTGGAA+GGG | 0.583943 | 5_4:-7193096 | Msa0834180:CDS |
| AATTTGTGAAGGTTGTGAGC+AGG | 0.587076 | 5_4:+7193489 | None:intergenic |
| GCCAAGGCTATGGCCGGTAA+CGG | 0.591069 | 5_4:+7192507 | None:intergenic |
| TATTCTCCAAGAAATATCAT+CGG | 0.595846 | 5_4:-7193138 | Msa0834180:CDS |
| AGAAAGTGGAGGGAATATCA+TGG | 0.601338 | 5_4:-7193114 | Msa0834180:CDS |
| TTGGTTGATGATGATTCCAA+AGG | 0.613659 | 5_4:+7193327 | None:intergenic |
| AGGTGGCACCAGATCTTGGT+TGG | 0.618491 | 5_4:-7192861 | Msa0834180:CDS |
| GGATGACAACCTCCGGCGAG+AGG | 0.618831 | 5_4:-7193058 | Msa0834180:CDS |
| CAGACTCAGACTCAGGCACA+AGG | 0.619166 | 5_4:-7192670 | Msa0834180:CDS |
| TTAGTGCTTGAAATTTGTGA+AGG | 0.626013 | 5_4:+7193478 | None:intergenic |
| TCAAAGCCCAAAGTTGAGTG+TGG | 0.627127 | 5_4:-7192643 | Msa0834180:CDS |
| ACAACAAGCAGCCATAGACA+TGG | 0.628855 | 5_4:+7191919 | None:intergenic |
| GCGTCGCACTTCTTCAACAA+CGG | 0.630718 | 5_4:+7192567 | None:intergenic |
| TTGTCTAATCTTAGTAGACA+GGG | 0.632883 | 5_4:-7191944 | Msa0834180:CDS |
| ATCTAACAACCTCTCGCCGG+AGG | 0.634684 | 5_4:+7193049 | None:intergenic |
| TGAAGCACCCCATCATCAAG+AGG | 0.635362 | 5_4:-7192965 | Msa0834180:CDS |
| AAGGACACCTCTTGATGATG+GGG | 0.638913 | 5_4:+7192958 | None:intergenic |
| TGTCGCGCCAAGGCTATGGC+CGG | 0.642253 | 5_4:+7192501 | None:intergenic |
| ACAGCGTCTTCTTTCCAAGA+CGG | 0.643880 | 5_4:-7193166 | Msa0834180:CDS |
| TCTGTTAATCTTAATAGACA+AGG | 0.646433 | 5_4:-7191974 | Msa0834180:CDS |
| TATCATCGGGAGAAAGTGGA+GGG | 0.648802 | 5_4:-7193124 | Msa0834180:CDS |
| ATTACCTAAATGGGTTGATG+AGG | 0.663925 | 5_4:-7192881 | Msa0834180:CDS |
| ATATCATCGGGAGAAAGTGG+AGG | 0.666029 | 5_4:-7193125 | Msa0834180:CDS |
| ATAGGGCTAGTGTCGCGCCA+AGG | 0.667674 | 5_4:+7192491 | None:intergenic |
| CCAATTAGTCGATTTACCCG+AGG | 0.667868 | 5_4:-7192698 | Msa0834180:CDS |
| GACGCTGTAAGCGTTTCAGG+TGG | 0.674999 | 5_4:+7193181 | None:intergenic |
| TTTATAAGATCTCTCCGACA+AGG | 0.680022 | 5_4:+7192939 | None:intergenic |
| GCGTCTTCTTTCCAAGACGG+CGG | 0.680773 | 5_4:-7193163 | Msa0834180:CDS |
| CCAACATGTGAATATCCCAA+AGG | 0.681313 | 5_4:+7192214 | None:intergenic |
| GAGCTTGTACAAGACAAAAG+GGG | 0.708452 | 5_4:-7192614 | Msa0834180:CDS |
| CACACAAGACGTGATTACAA+GGG | 0.729372 | 5_4:-7192329 | Msa0834180:CDS |
| AAGGCTCTGTTACCAACACG+AGG | 0.743509 | 5_4:+7192400 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAATTAAGAATTCCA+AGG | - | chr5_4:7193139-7193158 | Msa0834180:CDS | 20.0% |
| !! | AAAAAAGTTGTATACTAGTA+AGG | - | chr5_4:7193406-7193425 | Msa0834180:CDS | 20.0% |
| !! | AGAAAAAATTAAGAATTCCA+AGG | - | chr5_4:7193139-7193158 | Msa0834180:CDS | 20.0% |
| !! | AAAAAAGTTGTATACTAGTA+AGG | - | chr5_4:7193406-7193425 | Msa0834180:CDS | 20.0% |
| ! | AAAAGATGAAGGTTGTTTAA+TGG | + | chr5_4:7191992-7192011 | None:intergenic | 25.0% |
| !!! | TTTTTGTCACTTTTTTGGAT+AGG | + | chr5_4:7192135-7192154 | None:intergenic | 25.0% |
| ! | ATCCAAAAAAGTGACAAAAA+AGG | - | chr5_4:7192135-7192154 | Msa0834180:CDS | 25.0% |
| !!! | TTCCTTTTTTGTCACTTTTT+TGG | + | chr5_4:7192140-7192159 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAACTTTCTTGA+AGG | - | chr5_4:7192153-7192172 | Msa0834180:CDS | 25.0% |
| ! | TATTCTCCAAGAAATATCAT+CGG | - | chr5_4:7192276-7192295 | Msa0834180:CDS | 25.0% |
| ! | ATCAATTGGATTACCTAAAT+GGG | - | chr5_4:7192524-7192543 | Msa0834180:CDS | 25.0% |
| ! | TCTGTTAATCTTAATAGACA+AGG | - | chr5_4:7193440-7193459 | Msa0834180:CDS | 25.0% |
| ! | AAAAGATGAAGGTTGTTTAA+TGG | + | chr5_4:7191992-7192011 | None:intergenic | 25.0% |
| !!! | TTTTTGTCACTTTTTTGGAT+AGG | + | chr5_4:7192135-7192154 | None:intergenic | 25.0% |
| ! | ATCCAAAAAAGTGACAAAAA+AGG | - | chr5_4:7192135-7192154 | Msa0834180:CDS | 25.0% |
| !!! | TTCCTTTTTTGTCACTTTTT+TGG | + | chr5_4:7192140-7192159 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAACTTTCTTGA+AGG | - | chr5_4:7192153-7192172 | Msa0834180:CDS | 25.0% |
| ! | TATTCTCCAAGAAATATCAT+CGG | - | chr5_4:7192276-7192295 | Msa0834180:CDS | 25.0% |
| ! | ATCAATTGGATTACCTAAAT+GGG | - | chr5_4:7192524-7192543 | Msa0834180:CDS | 25.0% |
| ! | TCTGTTAATCTTAATAGACA+AGG | - | chr5_4:7193440-7193459 | Msa0834180:CDS | 25.0% |
| TTAGTGCTTGAAATTTGTGA+AGG | + | chr5_4:7191939-7191958 | None:intergenic | 30.0% | |
| GTTGTTTAATGGAAGAAGAA+TGG | + | chr5_4:7191981-7192000 | None:intergenic | 30.0% | |
| AAACCAATAACAACTCATCT+AGG | - | chr5_4:7192022-7192041 | Msa0834180:CDS | 30.0% | |
| TAACCTAGATGAGTTGTTAT+TGG | + | chr5_4:7192028-7192047 | None:intergenic | 30.0% | |
| !!! | CTTTTTTGGATAGGTTGTAT+TGG | + | chr5_4:7192126-7192145 | None:intergenic | 30.0% |
| ATTCTCCAAGAAATATCATC+GGG | - | chr5_4:7192277-7192296 | Msa0834180:CDS | 30.0% | |
| CATCAATTGGATTACCTAAA+TGG | - | chr5_4:7192523-7192542 | Msa0834180:CDS | 30.0% | |
| TAAAAGAGAGATTGCAAGAA+TGG | - | chr5_4:7192623-7192642 | Msa0834180:CDS | 30.0% | |
| AAAAGAGAGATTGCAAGAAT+GGG | - | chr5_4:7192624-7192643 | Msa0834180:CDS | 30.0% | |
| ATAAATCCACACTCAACTTT+GGG | + | chr5_4:7192780-7192799 | None:intergenic | 30.0% | |
| AGAGGCTTATTTACATTTAG+TGG | - | chr5_4:7193298-7193317 | Msa0834180:CDS | 30.0% | |
| GCTTATTTACATTTAGTGGA+TGG | - | chr5_4:7193302-7193321 | Msa0834180:CDS | 30.0% | |
| TTGTATACTAGTAAGGCTAA+AGG | - | chr5_4:7193413-7193432 | Msa0834180:CDS | 30.0% | |
| TTGTCTAATCTTAGTAGACA+GGG | - | chr5_4:7193470-7193489 | Msa0834180:CDS | 30.0% | |
| TTAGTGCTTGAAATTTGTGA+AGG | + | chr5_4:7191939-7191958 | None:intergenic | 30.0% | |
| GTTGTTTAATGGAAGAAGAA+TGG | + | chr5_4:7191981-7192000 | None:intergenic | 30.0% | |
| AAACCAATAACAACTCATCT+AGG | - | chr5_4:7192022-7192041 | Msa0834180:CDS | 30.0% | |
| TAACCTAGATGAGTTGTTAT+TGG | + | chr5_4:7192028-7192047 | None:intergenic | 30.0% | |
| !!! | CTTTTTTGGATAGGTTGTAT+TGG | + | chr5_4:7192126-7192145 | None:intergenic | 30.0% |
| ATTCTCCAAGAAATATCATC+GGG | - | chr5_4:7192277-7192296 | Msa0834180:CDS | 30.0% | |
| CATCAATTGGATTACCTAAA+TGG | - | chr5_4:7192523-7192542 | Msa0834180:CDS | 30.0% | |
| TAAAAGAGAGATTGCAAGAA+TGG | - | chr5_4:7192623-7192642 | Msa0834180:CDS | 30.0% | |
| AAAAGAGAGATTGCAAGAAT+GGG | - | chr5_4:7192624-7192643 | Msa0834180:CDS | 30.0% | |
| ATAAATCCACACTCAACTTT+GGG | + | chr5_4:7192780-7192799 | None:intergenic | 30.0% | |
| AGAGGCTTATTTACATTTAG+TGG | - | chr5_4:7193298-7193317 | Msa0834180:CDS | 30.0% | |
| GCTTATTTACATTTAGTGGA+TGG | - | chr5_4:7193302-7193321 | Msa0834180:CDS | 30.0% | |
| TTGTATACTAGTAAGGCTAA+AGG | - | chr5_4:7193413-7193432 | Msa0834180:CDS | 30.0% | |
| TTGTCTAATCTTAGTAGACA+GGG | - | chr5_4:7193470-7193489 | Msa0834180:CDS | 30.0% | |
| TGAAGAGAAGCAAAAGATGA+AGG | + | chr5_4:7192003-7192022 | None:intergenic | 35.0% | |
| ! | ATGATGATTCCAAAGGCTTT+TGG | + | chr5_4:7192083-7192102 | None:intergenic | 35.0% |
| !! | TTGGTTGATGATGATTCCAA+AGG | + | chr5_4:7192090-7192109 | None:intergenic | 35.0% |
| ! | TATTGGTTGTTGAAACTGGT+TGG | + | chr5_4:7192109-7192128 | None:intergenic | 35.0% |
| !! | GTTGTATTGGTTGTTGAAAC+TGG | + | chr5_4:7192113-7192132 | None:intergenic | 35.0% |
| GACTTAACCTAGCAAAACTA+TGG | - | chr5_4:7192175-7192194 | Msa0834180:CDS | 35.0% | |
| TTTCTCCCGATGATATTTCT+TGG | + | chr5_4:7192285-7192304 | None:intergenic | 35.0% | |
| GGTTGTTAGATATGGTGATT+TGG | - | chr5_4:7192377-7192396 | Msa0834180:CDS | 35.0% | |
| TTTATAAGATCTCTCCGACA+AGG | + | chr5_4:7192478-7192497 | None:intergenic | 35.0% | |
| !! | AGGTAATCCAATTGATGATG+TGG | + | chr5_4:7192520-7192539 | None:intergenic | 35.0% |
| !! | ATTACCTAAATGGGTTGATG+AGG | - | chr5_4:7192533-7192552 | Msa0834180:CDS | 35.0% |
| GATATTGTGATATCTCTTCG+TGG | - | chr5_4:7192654-7192673 | Msa0834180:CDS | 35.0% | |
| AACTTCCACTTGTCTTGAAT+GGG | - | chr5_4:7192677-7192696 | Msa0834180:CDS | 35.0% | |
| CATAAATCCACACTCAACTT+TGG | + | chr5_4:7192781-7192800 | None:intergenic | 35.0% | |
| ATGAGCTTGTACAAGACAAA+AGG | - | chr5_4:7192798-7192817 | Msa0834180:CDS | 35.0% | |
| TGAGCTTGTACAAGACAAAA+GGG | - | chr5_4:7192799-7192818 | Msa0834180:CDS | 35.0% | |
| ! | CGCCTTATTGAACTTTACAA+AGG | - | chr5_4:7192867-7192886 | Msa0834180:CDS | 35.0% |
| CGCCTTTGTAAAGTTCAATA+AGG | + | chr5_4:7192872-7192891 | None:intergenic | 35.0% | |
| GAATTAAGCATAACCGTTAC+CGG | - | chr5_4:7192894-7192913 | Msa0834180:CDS | 35.0% | |
| !! | CTTTTCAAGATGTTCTCCAA+AGG | + | chr5_4:7193036-7193055 | None:intergenic | 35.0% |
| TCCTCGCTTAAAAATATTCC+TGG | + | chr5_4:7193113-7193132 | None:intergenic | 35.0% | |
| AAGAATTCCAAGGTTGTTAG+TGG | - | chr5_4:7193149-7193168 | Msa0834180:CDS | 35.0% | |
| TAGTGGAGTTGTTGATATGT+TGG | - | chr5_4:7193166-7193185 | Msa0834180:CDS | 35.0% | |
| ! | ACATTTAGTGGATGGATACA+TGG | - | chr5_4:7193310-7193329 | Msa0834180:CDS | 35.0% |
| !! | CTCTTAGCATTAGCTCTAAA+TGG | + | chr5_4:7193347-7193366 | None:intergenic | 35.0% |
| CTTGTCTAATCTTAGTAGAC+AGG | - | chr5_4:7193469-7193488 | Msa0834180:CDS | 35.0% | |
| TGAAGAGAAGCAAAAGATGA+AGG | + | chr5_4:7192003-7192022 | None:intergenic | 35.0% | |
| ! | ATGATGATTCCAAAGGCTTT+TGG | + | chr5_4:7192083-7192102 | None:intergenic | 35.0% |
| !! | TTGGTTGATGATGATTCCAA+AGG | + | chr5_4:7192090-7192109 | None:intergenic | 35.0% |
| ! | TATTGGTTGTTGAAACTGGT+TGG | + | chr5_4:7192109-7192128 | None:intergenic | 35.0% |
| !! | GTTGTATTGGTTGTTGAAAC+TGG | + | chr5_4:7192113-7192132 | None:intergenic | 35.0% |
| GACTTAACCTAGCAAAACTA+TGG | - | chr5_4:7192175-7192194 | Msa0834180:CDS | 35.0% | |
| TTTCTCCCGATGATATTTCT+TGG | + | chr5_4:7192285-7192304 | None:intergenic | 35.0% | |
| GGTTGTTAGATATGGTGATT+TGG | - | chr5_4:7192377-7192396 | Msa0834180:CDS | 35.0% | |
| TTTATAAGATCTCTCCGACA+AGG | + | chr5_4:7192478-7192497 | None:intergenic | 35.0% | |
| !! | AGGTAATCCAATTGATGATG+TGG | + | chr5_4:7192520-7192539 | None:intergenic | 35.0% |
| !! | ATTACCTAAATGGGTTGATG+AGG | - | chr5_4:7192533-7192552 | Msa0834180:CDS | 35.0% |
| GATATTGTGATATCTCTTCG+TGG | - | chr5_4:7192654-7192673 | Msa0834180:CDS | 35.0% | |
| AACTTCCACTTGTCTTGAAT+GGG | - | chr5_4:7192677-7192696 | Msa0834180:CDS | 35.0% | |
| CATAAATCCACACTCAACTT+TGG | + | chr5_4:7192781-7192800 | None:intergenic | 35.0% | |
| ATGAGCTTGTACAAGACAAA+AGG | - | chr5_4:7192798-7192817 | Msa0834180:CDS | 35.0% | |
| TGAGCTTGTACAAGACAAAA+GGG | - | chr5_4:7192799-7192818 | Msa0834180:CDS | 35.0% | |
| ! | CGCCTTATTGAACTTTACAA+AGG | - | chr5_4:7192867-7192886 | Msa0834180:CDS | 35.0% |
| CGCCTTTGTAAAGTTCAATA+AGG | + | chr5_4:7192872-7192891 | None:intergenic | 35.0% | |
| GAATTAAGCATAACCGTTAC+CGG | - | chr5_4:7192894-7192913 | Msa0834180:CDS | 35.0% | |
| !! | CTTTTCAAGATGTTCTCCAA+AGG | + | chr5_4:7193036-7193055 | None:intergenic | 35.0% |
| TCCTCGCTTAAAAATATTCC+TGG | + | chr5_4:7193113-7193132 | None:intergenic | 35.0% | |
| AAGAATTCCAAGGTTGTTAG+TGG | - | chr5_4:7193149-7193168 | Msa0834180:CDS | 35.0% | |
| TAGTGGAGTTGTTGATATGT+TGG | - | chr5_4:7193166-7193185 | Msa0834180:CDS | 35.0% | |
| ! | ACATTTAGTGGATGGATACA+TGG | - | chr5_4:7193310-7193329 | Msa0834180:CDS | 35.0% |
| !! | CTCTTAGCATTAGCTCTAAA+TGG | + | chr5_4:7193347-7193366 | None:intergenic | 35.0% |
| CTTGTCTAATCTTAGTAGAC+AGG | - | chr5_4:7193469-7193488 | Msa0834180:CDS | 35.0% | |
| AATTTGTGAAGGTTGTGAGC+AGG | + | chr5_4:7191928-7191947 | None:intergenic | 40.0% | |
| ! | GAAGAATGGCATCTGAAACT+AGG | + | chr5_4:7191967-7191986 | None:intergenic | 40.0% |
| ! | TCTTGATAGCCAAAAGCCTT+TGG | - | chr5_4:7192071-7192090 | Msa0834180:CDS | 40.0% |
| ! | TCTTCAGCTGCTTTAATCTC+TGG | + | chr5_4:7192201-7192220 | None:intergenic | 40.0% |
| GAAATATCATCGGGAGAAAG+TGG | - | chr5_4:7192286-7192305 | Msa0834180:CDS | 40.0% | |
| AGAAAGTGGAGGGAATATCA+TGG | - | chr5_4:7192300-7192319 | Msa0834180:CDS | 40.0% | |
| CTGTATGCCACATCATCAAT+TGG | - | chr5_4:7192510-7192529 | Msa0834180:CDS | 40.0% | |
| GAACTTCCACTTGTCTTGAA+TGG | - | chr5_4:7192676-7192695 | Msa0834180:CDS | 40.0% | |
| CTCGGGTAAATCGACTAATT+GGG | + | chr5_4:7192718-7192737 | None:intergenic | 40.0% | |
| ! | ACTCAACTTTGGGCTTTGAT+TGG | + | chr5_4:7192770-7192789 | None:intergenic | 40.0% |
| GAGCTTGTACAAGACAAAAG+GGG | - | chr5_4:7192800-7192819 | Msa0834180:CDS | 40.0% | |
| CCAAATGAAAAAACAGCCAC+GGG | + | chr5_4:7192990-7193009 | None:intergenic | 40.0% | |
| GCCAAATGAAAAAACAGCCA+CGG | + | chr5_4:7192991-7193010 | None:intergenic | 40.0% | |
| !!! | GTGGCTGTTTTTTCATTTGG+CGG | - | chr5_4:7192990-7193009 | Msa0834180:CDS | 40.0% |
| ACACACAAGACGTGATTACA+AGG | - | chr5_4:7193084-7193103 | Msa0834180:CDS | 40.0% | |
| CACACAAGACGTGATTACAA+GGG | - | chr5_4:7193085-7193104 | Msa0834180:CDS | 40.0% | |
| !! | GCCAGGAATATTTTTAAGCG+AGG | - | chr5_4:7193109-7193128 | Msa0834180:CDS | 40.0% |
| AACAACTCCACTAACAACCT+TGG | + | chr5_4:7193159-7193178 | None:intergenic | 40.0% | |
| TTGGAAGAGAACACTCCTTT+GGG | - | chr5_4:7193185-7193204 | Msa0834180:CDS | 40.0% | |
| CCAACATGTGAATATCCCAA+AGG | + | chr5_4:7193203-7193222 | None:intergenic | 40.0% | |
| !! | CCTTTGGGATATTCACATGT+TGG | - | chr5_4:7193200-7193219 | Msa0834180:CDS | 40.0% |
| ACAACAAGCTATGTCAGCAT+CGG | + | chr5_4:7193270-7193289 | None:intergenic | 40.0% | |
| !! | AGCTTGTTGTCATGATCTAG+AGG | - | chr5_4:7193280-7193299 | Msa0834180:CDS | 40.0% |
| AATTTGTGAAGGTTGTGAGC+AGG | + | chr5_4:7191928-7191947 | None:intergenic | 40.0% | |
| ! | GAAGAATGGCATCTGAAACT+AGG | + | chr5_4:7191967-7191986 | None:intergenic | 40.0% |
| ! | TCTTGATAGCCAAAAGCCTT+TGG | - | chr5_4:7192071-7192090 | Msa0834180:CDS | 40.0% |
| ! | TCTTCAGCTGCTTTAATCTC+TGG | + | chr5_4:7192201-7192220 | None:intergenic | 40.0% |
| GAAATATCATCGGGAGAAAG+TGG | - | chr5_4:7192286-7192305 | Msa0834180:CDS | 40.0% | |
| AGAAAGTGGAGGGAATATCA+TGG | - | chr5_4:7192300-7192319 | Msa0834180:CDS | 40.0% | |
| CTGTATGCCACATCATCAAT+TGG | - | chr5_4:7192510-7192529 | Msa0834180:CDS | 40.0% | |
| GAACTTCCACTTGTCTTGAA+TGG | - | chr5_4:7192676-7192695 | Msa0834180:CDS | 40.0% | |
| CTCGGGTAAATCGACTAATT+GGG | + | chr5_4:7192718-7192737 | None:intergenic | 40.0% | |
| ! | ACTCAACTTTGGGCTTTGAT+TGG | + | chr5_4:7192770-7192789 | None:intergenic | 40.0% |
| GAGCTTGTACAAGACAAAAG+GGG | - | chr5_4:7192800-7192819 | Msa0834180:CDS | 40.0% | |
| CCAAATGAAAAAACAGCCAC+GGG | + | chr5_4:7192990-7193009 | None:intergenic | 40.0% | |
| GCCAAATGAAAAAACAGCCA+CGG | + | chr5_4:7192991-7193010 | None:intergenic | 40.0% | |
| !!! | GTGGCTGTTTTTTCATTTGG+CGG | - | chr5_4:7192990-7193009 | Msa0834180:CDS | 40.0% |
| ACACACAAGACGTGATTACA+AGG | - | chr5_4:7193084-7193103 | Msa0834180:CDS | 40.0% | |
| CACACAAGACGTGATTACAA+GGG | - | chr5_4:7193085-7193104 | Msa0834180:CDS | 40.0% | |
| !! | GCCAGGAATATTTTTAAGCG+AGG | - | chr5_4:7193109-7193128 | Msa0834180:CDS | 40.0% |
| AACAACTCCACTAACAACCT+TGG | + | chr5_4:7193159-7193178 | None:intergenic | 40.0% | |
| TTGGAAGAGAACACTCCTTT+GGG | - | chr5_4:7193185-7193204 | Msa0834180:CDS | 40.0% | |
| CCAACATGTGAATATCCCAA+AGG | + | chr5_4:7193203-7193222 | None:intergenic | 40.0% | |
| !! | CCTTTGGGATATTCACATGT+TGG | - | chr5_4:7193200-7193219 | Msa0834180:CDS | 40.0% |
| ACAACAAGCTATGTCAGCAT+CGG | + | chr5_4:7193270-7193289 | None:intergenic | 40.0% | |
| !! | AGCTTGTTGTCATGATCTAG+AGG | - | chr5_4:7193280-7193299 | Msa0834180:CDS | 40.0% |
| !! | TCTCTGGCCATAGTTTTGCT+AGG | + | chr5_4:7192185-7192204 | None:intergenic | 45.0% |
| ACAGCGTCTTCTTTCCAAGA+CGG | - | chr5_4:7192248-7192267 | Msa0834180:CDS | 45.0% | |
| ATATCATCGGGAGAAAGTGG+AGG | - | chr5_4:7192289-7192308 | Msa0834180:CDS | 45.0% | |
| TATCATCGGGAGAAAGTGGA+GGG | - | chr5_4:7192290-7192309 | Msa0834180:CDS | 45.0% | |
| AATATCATGGCAGCAACGAC+TGG | - | chr5_4:7192313-7192332 | Msa0834180:CDS | 45.0% | |
| CATATCTAACAACCTCTCGC+CGG | + | chr5_4:7192371-7192390 | None:intergenic | 45.0% | |
| !! | AAGGACACCTCTTGATGATG+GGG | + | chr5_4:7192459-7192478 | None:intergenic | 45.0% |
| ! | CAAGGACACCTCTTGATGAT+GGG | + | chr5_4:7192460-7192479 | None:intergenic | 45.0% |
| ACAAGGACACCTCTTGATGA+TGG | + | chr5_4:7192461-7192480 | None:intergenic | 45.0% | |
| !! | TCATCAAGAGGTGTCCTTGT+CGG | - | chr5_4:7192461-7192480 | Msa0834180:CDS | 45.0% |
| TGATGTGGCATACAGACTCT+TGG | + | chr5_4:7192505-7192524 | None:intergenic | 45.0% | |
| !! | ACCTAAATGGGTTGATGAGG+TGG | - | chr5_4:7192536-7192555 | Msa0834180:CDS | 45.0% |
| TTCAGCCCATTCAAGACAAG+TGG | + | chr5_4:7192685-7192704 | None:intergenic | 45.0% | |
| CCTCGGGTAAATCGACTAAT+TGG | + | chr5_4:7192719-7192738 | None:intergenic | 45.0% | |
| ! | CCAATTAGTCGATTTACCCG+AGG | - | chr5_4:7192716-7192735 | Msa0834180:CDS | 45.0% |
| TCAAAGCCCAAAGTTGAGTG+TGG | - | chr5_4:7192771-7192790 | Msa0834180:CDS | 45.0% | |
| ! | CACTTCTTCAACAACGGACT+CGG | + | chr5_4:7192844-7192863 | None:intergenic | 45.0% |
| AATTTCCTCGGCCACCAATA+GGG | + | chr5_4:7192943-7192962 | None:intergenic | 45.0% | |
| TAATTTCCTCGGCCACCAAT+AGG | + | chr5_4:7192944-7192963 | None:intergenic | 45.0% | |
| AATGAAAAAACAGCCACGGG+TGG | + | chr5_4:7192987-7193006 | None:intergenic | 45.0% | |
| !!! | CCCGTGGCTGTTTTTTCATT+TGG | - | chr5_4:7192987-7193006 | Msa0834180:CDS | 45.0% |
| GTTGGAAGAGAACACTCCTT+TGG | - | chr5_4:7193184-7193203 | Msa0834180:CDS | 45.0% | |
| CAACAAGCTATGTCAGCATC+GGG | + | chr5_4:7193269-7193288 | None:intergenic | 45.0% | |
| TAGACAGGGATCCATGTCTA+TGG | - | chr5_4:7193484-7193503 | Msa0834180:CDS | 45.0% | |
| ACAACAAGCAGCCATAGACA+TGG | + | chr5_4:7193498-7193517 | None:intergenic | 45.0% | |
| !! | TCTCTGGCCATAGTTTTGCT+AGG | + | chr5_4:7192185-7192204 | None:intergenic | 45.0% |
| ACAGCGTCTTCTTTCCAAGA+CGG | - | chr5_4:7192248-7192267 | Msa0834180:CDS | 45.0% | |
| ATATCATCGGGAGAAAGTGG+AGG | - | chr5_4:7192289-7192308 | Msa0834180:CDS | 45.0% | |
| TATCATCGGGAGAAAGTGGA+GGG | - | chr5_4:7192290-7192309 | Msa0834180:CDS | 45.0% | |
| AATATCATGGCAGCAACGAC+TGG | - | chr5_4:7192313-7192332 | Msa0834180:CDS | 45.0% | |
| CATATCTAACAACCTCTCGC+CGG | + | chr5_4:7192371-7192390 | None:intergenic | 45.0% | |
| !! | AAGGACACCTCTTGATGATG+GGG | + | chr5_4:7192459-7192478 | None:intergenic | 45.0% |
| ! | CAAGGACACCTCTTGATGAT+GGG | + | chr5_4:7192460-7192479 | None:intergenic | 45.0% |
| ACAAGGACACCTCTTGATGA+TGG | + | chr5_4:7192461-7192480 | None:intergenic | 45.0% | |
| !! | TCATCAAGAGGTGTCCTTGT+CGG | - | chr5_4:7192461-7192480 | Msa0834180:CDS | 45.0% |
| TGATGTGGCATACAGACTCT+TGG | + | chr5_4:7192505-7192524 | None:intergenic | 45.0% | |
| !! | ACCTAAATGGGTTGATGAGG+TGG | - | chr5_4:7192536-7192555 | Msa0834180:CDS | 45.0% |
| TTCAGCCCATTCAAGACAAG+TGG | + | chr5_4:7192685-7192704 | None:intergenic | 45.0% | |
| CCTCGGGTAAATCGACTAAT+TGG | + | chr5_4:7192719-7192738 | None:intergenic | 45.0% | |
| ! | CCAATTAGTCGATTTACCCG+AGG | - | chr5_4:7192716-7192735 | Msa0834180:CDS | 45.0% |
| TCAAAGCCCAAAGTTGAGTG+TGG | - | chr5_4:7192771-7192790 | Msa0834180:CDS | 45.0% | |
| ! | CACTTCTTCAACAACGGACT+CGG | + | chr5_4:7192844-7192863 | None:intergenic | 45.0% |
| AATTTCCTCGGCCACCAATA+GGG | + | chr5_4:7192943-7192962 | None:intergenic | 45.0% | |
| TAATTTCCTCGGCCACCAAT+AGG | + | chr5_4:7192944-7192963 | None:intergenic | 45.0% | |
| AATGAAAAAACAGCCACGGG+TGG | + | chr5_4:7192987-7193006 | None:intergenic | 45.0% | |
| !!! | CCCGTGGCTGTTTTTTCATT+TGG | - | chr5_4:7192987-7193006 | Msa0834180:CDS | 45.0% |
| GTTGGAAGAGAACACTCCTT+TGG | - | chr5_4:7193184-7193203 | Msa0834180:CDS | 45.0% | |
| CAACAAGCTATGTCAGCATC+GGG | + | chr5_4:7193269-7193288 | None:intergenic | 45.0% | |
| TAGACAGGGATCCATGTCTA+TGG | - | chr5_4:7193484-7193503 | Msa0834180:CDS | 45.0% | |
| ACAACAAGCAGCCATAGACA+TGG | + | chr5_4:7193498-7193517 | None:intergenic | 45.0% | |
| GTGAAGGTTGTGAGCAGGTA+AGG | + | chr5_4:7191923-7191942 | None:intergenic | 50.0% | |
| GAAGACGCTGTAAGCGTTTC+AGG | + | chr5_4:7192239-7192258 | None:intergenic | 50.0% | |
| GAAGGGGATGTTAGATCCCT+TGG | - | chr5_4:7192335-7192354 | Msa0834180:CDS | 50.0% | |
| ATCCCTTGGATGACAACCTC+CGG | - | chr5_4:7192349-7192368 | Msa0834180:CDS | 50.0% | |
| CGGCGAGAGGTTGTTAGATA+TGG | - | chr5_4:7192369-7192388 | Msa0834180:CDS | 50.0% | |
| GCTTCAGTTGTTGACATGGC+AGG | + | chr5_4:7192435-7192454 | None:intergenic | 50.0% | |
| GGGTGCTTCAGTTGTTGACA+TGG | + | chr5_4:7192439-7192458 | None:intergenic | 50.0% | |
| ! | TGAAGCACCCCATCATCAAG+AGG | - | chr5_4:7192449-7192468 | Msa0834180:CDS | 50.0% |
| GCCACCTCATCAACCCATTT+AGG | + | chr5_4:7192540-7192559 | None:intergenic | 50.0% | |
| TGGGTCATCCAACCAAGATC+TGG | + | chr5_4:7192564-7192583 | None:intergenic | 50.0% | |
| ! | CTTCAACAACGGACTCGGAT+AGG | + | chr5_4:7192839-7192858 | None:intergenic | 50.0% |
| GCGTCGCACTTCTTCAACAA+CGG | + | chr5_4:7192850-7192869 | None:intergenic | 50.0% | |
| AAGGCTCTGTTACCAACACG+AGG | + | chr5_4:7193017-7193036 | None:intergenic | 50.0% | |
| !! | CGTGTTGGTAACAGAGCCTT+TGG | - | chr5_4:7193017-7193036 | Msa0834180:CDS | 50.0% |
| ! | TCAGCATCGGGCTTCAAGTA+AGG | + | chr5_4:7193257-7193276 | None:intergenic | 50.0% |
| GTGAAGGTTGTGAGCAGGTA+AGG | + | chr5_4:7191923-7191942 | None:intergenic | 50.0% | |
| GAAGACGCTGTAAGCGTTTC+AGG | + | chr5_4:7192239-7192258 | None:intergenic | 50.0% | |
| GAAGGGGATGTTAGATCCCT+TGG | - | chr5_4:7192335-7192354 | Msa0834180:CDS | 50.0% | |
| ATCCCTTGGATGACAACCTC+CGG | - | chr5_4:7192349-7192368 | Msa0834180:CDS | 50.0% | |
| CGGCGAGAGGTTGTTAGATA+TGG | - | chr5_4:7192369-7192388 | Msa0834180:CDS | 50.0% | |
| GCTTCAGTTGTTGACATGGC+AGG | + | chr5_4:7192435-7192454 | None:intergenic | 50.0% | |
| GGGTGCTTCAGTTGTTGACA+TGG | + | chr5_4:7192439-7192458 | None:intergenic | 50.0% | |
| ! | TGAAGCACCCCATCATCAAG+AGG | - | chr5_4:7192449-7192468 | Msa0834180:CDS | 50.0% |
| GCCACCTCATCAACCCATTT+AGG | + | chr5_4:7192540-7192559 | None:intergenic | 50.0% | |
| TGGGTCATCCAACCAAGATC+TGG | + | chr5_4:7192564-7192583 | None:intergenic | 50.0% | |
| ! | CTTCAACAACGGACTCGGAT+AGG | + | chr5_4:7192839-7192858 | None:intergenic | 50.0% |
| GCGTCGCACTTCTTCAACAA+CGG | + | chr5_4:7192850-7192869 | None:intergenic | 50.0% | |
| AAGGCTCTGTTACCAACACG+AGG | + | chr5_4:7193017-7193036 | None:intergenic | 50.0% | |
| !! | CGTGTTGGTAACAGAGCCTT+TGG | - | chr5_4:7193017-7193036 | Msa0834180:CDS | 50.0% |
| ! | TCAGCATCGGGCTTCAAGTA+AGG | + | chr5_4:7193257-7193276 | None:intergenic | 50.0% |
| ! | TGTAAGCGTTTCAGGTGGCG+GGG | + | chr5_4:7192231-7192250 | None:intergenic | 55.0% |
| ! | CTGTAAGCGTTTCAGGTGGC+GGG | + | chr5_4:7192232-7192251 | None:intergenic | 55.0% |
| ! | GCTGTAAGCGTTTCAGGTGG+CGG | + | chr5_4:7192233-7192252 | None:intergenic | 55.0% |
| GACGCTGTAAGCGTTTCAGG+TGG | + | chr5_4:7192236-7192255 | None:intergenic | 55.0% | |
| GCGTCTTCTTTCCAAGACGG+CGG | - | chr5_4:7192251-7192270 | Msa0834180:CDS | 55.0% | |
| TGGAGAATACTCCGCCGTCT+TGG | + | chr5_4:7192265-7192284 | None:intergenic | 55.0% | |
| TCATGGCAGCAACGACTGGA+AGG | - | chr5_4:7192317-7192336 | Msa0834180:CDS | 55.0% | |
| CATGGCAGCAACGACTGGAA+GGG | - | chr5_4:7192318-7192337 | Msa0834180:CDS | 55.0% | |
| ATGGCAGCAACGACTGGAAG+GGG | - | chr5_4:7192319-7192338 | Msa0834180:CDS | 55.0% | |
| ATCTAACAACCTCTCGCCGG+AGG | + | chr5_4:7192368-7192387 | None:intergenic | 55.0% | |
| GATGAGGTGGCACCAGATCT+TGG | - | chr5_4:7192549-7192568 | Msa0834180:CDS | 55.0% | |
| AGGTGGCACCAGATCTTGGT+TGG | - | chr5_4:7192553-7192572 | Msa0834180:CDS | 55.0% | |
| ! | GATGACCCAGCGTTCTAGCT+GGG | - | chr5_4:7192575-7192594 | Msa0834180:CDS | 55.0% |
| TCCAACCCAGCTAGAACGCT+GGG | + | chr5_4:7192583-7192602 | None:intergenic | 55.0% | |
| ATCCAACCCAGCTAGAACGC+TGG | + | chr5_4:7192584-7192603 | None:intergenic | 55.0% | |
| AGTCTGAGTCTGAGCGTCCT+CGG | + | chr5_4:7192736-7192755 | None:intergenic | 55.0% | |
| CAGACTCAGACTCAGGCACA+AGG | - | chr5_4:7192744-7192763 | Msa0834180:CDS | 55.0% | |
| GCCGAGGAAATTAGCACGTG+CGG | - | chr5_4:7192951-7192970 | Msa0834180:CDS | 55.0% | |
| CCCGCACGTGCTAATTTCCT+CGG | + | chr5_4:7192955-7192974 | None:intergenic | 55.0% | |
| CCGAGGAAATTAGCACGTGC+GGG | - | chr5_4:7192952-7192971 | Msa0834180:CDS | 55.0% | |
| ! | TCATTTGGCGGACCTCGTGT+TGG | - | chr5_4:7193002-7193021 | Msa0834180:CDS | 55.0% |
| !! | GACGTGATTACAAGGGTGCC+AGG | - | chr5_4:7193092-7193111 | Msa0834180:CDS | 55.0% |
| ! | TGTAAGCGTTTCAGGTGGCG+GGG | + | chr5_4:7192231-7192250 | None:intergenic | 55.0% |
| ! | CTGTAAGCGTTTCAGGTGGC+GGG | + | chr5_4:7192232-7192251 | None:intergenic | 55.0% |
| ! | GCTGTAAGCGTTTCAGGTGG+CGG | + | chr5_4:7192233-7192252 | None:intergenic | 55.0% |
| GACGCTGTAAGCGTTTCAGG+TGG | + | chr5_4:7192236-7192255 | None:intergenic | 55.0% | |
| GCGTCTTCTTTCCAAGACGG+CGG | - | chr5_4:7192251-7192270 | Msa0834180:CDS | 55.0% | |
| TGGAGAATACTCCGCCGTCT+TGG | + | chr5_4:7192265-7192284 | None:intergenic | 55.0% | |
| TCATGGCAGCAACGACTGGA+AGG | - | chr5_4:7192317-7192336 | Msa0834180:CDS | 55.0% | |
| CATGGCAGCAACGACTGGAA+GGG | - | chr5_4:7192318-7192337 | Msa0834180:CDS | 55.0% | |
| ATGGCAGCAACGACTGGAAG+GGG | - | chr5_4:7192319-7192338 | Msa0834180:CDS | 55.0% | |
| ATCTAACAACCTCTCGCCGG+AGG | + | chr5_4:7192368-7192387 | None:intergenic | 55.0% | |
| GATGAGGTGGCACCAGATCT+TGG | - | chr5_4:7192549-7192568 | Msa0834180:CDS | 55.0% | |
| AGGTGGCACCAGATCTTGGT+TGG | - | chr5_4:7192553-7192572 | Msa0834180:CDS | 55.0% | |
| ! | GATGACCCAGCGTTCTAGCT+GGG | - | chr5_4:7192575-7192594 | Msa0834180:CDS | 55.0% |
| TCCAACCCAGCTAGAACGCT+GGG | + | chr5_4:7192583-7192602 | None:intergenic | 55.0% | |
| ATCCAACCCAGCTAGAACGC+TGG | + | chr5_4:7192584-7192603 | None:intergenic | 55.0% | |
| AGTCTGAGTCTGAGCGTCCT+CGG | + | chr5_4:7192736-7192755 | None:intergenic | 55.0% | |
| CAGACTCAGACTCAGGCACA+AGG | - | chr5_4:7192744-7192763 | Msa0834180:CDS | 55.0% | |
| GCCGAGGAAATTAGCACGTG+CGG | - | chr5_4:7192951-7192970 | Msa0834180:CDS | 55.0% | |
| CCCGCACGTGCTAATTTCCT+CGG | + | chr5_4:7192955-7192974 | None:intergenic | 55.0% | |
| CCGAGGAAATTAGCACGTGC+GGG | - | chr5_4:7192952-7192971 | Msa0834180:CDS | 55.0% | |
| ! | TCATTTGGCGGACCTCGTGT+TGG | - | chr5_4:7193002-7193021 | Msa0834180:CDS | 55.0% |
| !! | GACGTGATTACAAGGGTGCC+AGG | - | chr5_4:7193092-7193111 | Msa0834180:CDS | 55.0% |
| !! | TAAGCGTTTCAGGTGGCGGG+GGG | + | chr5_4:7192229-7192248 | None:intergenic | 60.0% |
| ! | GTAAGCGTTTCAGGTGGCGG+GGG | + | chr5_4:7192230-7192249 | None:intergenic | 60.0% |
| CGCCGGAGGTTGTCATCCAA+GGG | + | chr5_4:7192354-7192373 | None:intergenic | 60.0% | |
| TCGCCGGAGGTTGTCATCCA+AGG | + | chr5_4:7192355-7192374 | None:intergenic | 60.0% | |
| GGATGACCCAGCGTTCTAGC+TGG | - | chr5_4:7192574-7192593 | Msa0834180:CDS | 60.0% | |
| ! | ACCCAGCGTTCTAGCTGGGT+TGG | - | chr5_4:7192579-7192598 | Msa0834180:CDS | 60.0% |
| GTCTGAGTCTGAGCGTCCTC+GGG | + | chr5_4:7192735-7192754 | None:intergenic | 60.0% | |
| GGACGCTCAGACTCAGACTC+AGG | - | chr5_4:7192737-7192756 | Msa0834180:CDS | 60.0% | |
| ACCGTTACCGGCCATAGCCT+TGG | - | chr5_4:7192906-7192925 | Msa0834180:CDS | 60.0% | |
| GCCAAGGCTATGGCCGGTAA+CGG | + | chr5_4:7192910-7192929 | None:intergenic | 60.0% | |
| CTAGTGTCGCGCCAAGGCTA+TGG | + | chr5_4:7192920-7192939 | None:intergenic | 60.0% | |
| ! | ATAGGGCTAGTGTCGCGCCA+AGG | + | chr5_4:7192926-7192945 | None:intergenic | 60.0% |
| TGGCGCGACACTAGCCCTAT+TGG | - | chr5_4:7192926-7192945 | Msa0834180:CDS | 60.0% | |
| CGCGACACTAGCCCTATTGG+TGG | - | chr5_4:7192929-7192948 | Msa0834180:CDS | 60.0% | |
| ! | ACTAGCCCTATTGGTGGCCG+AGG | - | chr5_4:7192935-7192954 | Msa0834180:CDS | 60.0% |
| !! | TAAGCGTTTCAGGTGGCGGG+GGG | + | chr5_4:7192229-7192248 | None:intergenic | 60.0% |
| ! | GTAAGCGTTTCAGGTGGCGG+GGG | + | chr5_4:7192230-7192249 | None:intergenic | 60.0% |
| CGCCGGAGGTTGTCATCCAA+GGG | + | chr5_4:7192354-7192373 | None:intergenic | 60.0% | |
| TCGCCGGAGGTTGTCATCCA+AGG | + | chr5_4:7192355-7192374 | None:intergenic | 60.0% | |
| GGATGACCCAGCGTTCTAGC+TGG | - | chr5_4:7192574-7192593 | Msa0834180:CDS | 60.0% | |
| ! | ACCCAGCGTTCTAGCTGGGT+TGG | - | chr5_4:7192579-7192598 | Msa0834180:CDS | 60.0% |
| GTCTGAGTCTGAGCGTCCTC+GGG | + | chr5_4:7192735-7192754 | None:intergenic | 60.0% | |
| GGACGCTCAGACTCAGACTC+AGG | - | chr5_4:7192737-7192756 | Msa0834180:CDS | 60.0% | |
| ACCGTTACCGGCCATAGCCT+TGG | - | chr5_4:7192906-7192925 | Msa0834180:CDS | 60.0% | |
| GCCAAGGCTATGGCCGGTAA+CGG | + | chr5_4:7192910-7192929 | None:intergenic | 60.0% | |
| CTAGTGTCGCGCCAAGGCTA+TGG | + | chr5_4:7192920-7192939 | None:intergenic | 60.0% | |
| ! | ATAGGGCTAGTGTCGCGCCA+AGG | + | chr5_4:7192926-7192945 | None:intergenic | 60.0% |
| TGGCGCGACACTAGCCCTAT+TGG | - | chr5_4:7192926-7192945 | Msa0834180:CDS | 60.0% | |
| CGCGACACTAGCCCTATTGG+TGG | - | chr5_4:7192929-7192948 | Msa0834180:CDS | 60.0% | |
| ! | ACTAGCCCTATTGGTGGCCG+AGG | - | chr5_4:7192935-7192954 | Msa0834180:CDS | 60.0% |
| GGATGACAACCTCCGGCGAG+AGG | - | chr5_4:7192356-7192375 | Msa0834180:CDS | 65.0% | |
| TGTCGCGCCAAGGCTATGGC+CGG | + | chr5_4:7192916-7192935 | None:intergenic | 65.0% | |
| ACAGCCACGGGTGGCACGTT+TGG | + | chr5_4:7192978-7192997 | None:intergenic | 65.0% | |
| GGATGACAACCTCCGGCGAG+AGG | - | chr5_4:7192356-7192375 | Msa0834180:CDS | 65.0% | |
| TGTCGCGCCAAGGCTATGGC+CGG | + | chr5_4:7192916-7192935 | None:intergenic | 65.0% | |
| ACAGCCACGGGTGGCACGTT+TGG | + | chr5_4:7192978-7192997 | None:intergenic | 65.0% | |
| CGGGCCAAACGTGCCACCCG+TGG | - | chr5_4:7192971-7192990 | Msa0834180:CDS | 75.0% | |
| CGGGCCAAACGTGCCACCCG+TGG | - | chr5_4:7192971-7192990 | Msa0834180:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7191898 | 7193538 | 7191898 | ID=Msa0834180;Name=Msa0834180 |
| chr5_4 | mRNA | 7191898 | 7193538 | 7191898 | ID=Msa0834180-mRNA-1;Parent=Msa0834180;Name=Msa0834180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|546 |
| chr5_4 | exon | 7191898 | 7193538 | 7191898 | ID=Msa0834180-mRNA-1:exon:3220;Parent=Msa0834180-mRNA-1 |
| chr5_4 | CDS | 7191898 | 7193538 | 7191898 | ID=Msa0834180-mRNA-1:cds;Parent=Msa0834180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
