Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388090 | XP_003611369.1 | 97.445 | 548 | 12 | 2 | 1 | 546 | 1 | 548 | 0.0 | 1106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388090 | sp|O23522|PLA14_ARATH | 55.179 | 531 | 198 | 10 | 25 | 546 | 18 | 517 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388090 | G7JXH0 | 97.445 | 548 | 12 | 2 | 1 | 546 | 1 | 548 | 0.0 | 1106 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011050 | Msa1388090 | 0.803366 | 3.607543e-49 | -8.615850e-47 |
| Msa0051050 | Msa1388090 | 0.832816 | 7.617509e-56 | -8.615850e-47 |
| Msa0101240 | Msa1388090 | 0.833472 | 5.228810e-56 | -8.615850e-47 |
| Msa1360420 | Msa1388090 | 0.850411 | 1.728479e-60 | -8.615850e-47 |
| Msa1388090 | Msa1409490 | 0.805978 | 1.027945e-49 | -8.615850e-47 |
| Msa1388090 | Msa1424630 | 0.822633 | 2.133799e-53 | -8.615850e-47 |
| Msa1388090 | Msa1463030 | 0.801285 | 9.675718e-49 | -8.615850e-47 |
| Msa0615290 | Msa1388090 | 0.813963 | 1.961392e-51 | -8.615850e-47 |
| Msa0664540 | Msa1388090 | 0.802749 | 4.840085e-49 | -8.615850e-47 |
| Msa0754770 | Msa1388090 | 0.970352 | 1.734979e-131 | -8.615850e-47 |
| Msa0754810 | Msa1388090 | 0.824656 | 7.172319e-54 | -8.615850e-47 |
| Msa0758250 | Msa1388090 | 0.810950 | 8.930718e-51 | -8.615850e-47 |
| Msa0796630 | Msa1388090 | 0.974087 | 1.531056e-137 | -8.615850e-47 |
| Msa0798010 | Msa1388090 | 0.805079 | 1.587275e-49 | -8.615850e-47 |
| Msa0833890 | Msa1388090 | 0.993660 | 2.670229e-201 | -8.615850e-47 |
| Msa0834180 | Msa1388090 | 0.996902 | 7.023227e-234 | -8.615850e-47 |
| Msa0837870 | Msa1388090 | 0.804525 | 2.072072e-49 | -8.615850e-47 |
| Msa0201570 | Msa1388090 | 0.811255 | 7.672581e-51 | -8.615850e-47 |
| Msa1259860 | Msa1388090 | 0.804504 | 2.093026e-49 | -8.615850e-47 |
| Msa1337310 | Msa1388090 | 0.805248 | 1.463171e-49 | -8.615850e-47 |
| Msa0408340 | Msa1388090 | 0.802164 | 6.387857e-49 | -8.615850e-47 |
| Msa0999680 | Msa1388090 | 0.807182 | 5.726051e-50 | -8.615850e-47 |
| Msa1029870 | Msa1388090 | 0.805846 | 1.095847e-49 | -8.615850e-47 |
| Msa1043120 | Msa1388090 | 0.807758 | 4.323046e-50 | -8.615850e-47 |
| Msa1114780 | Msa1388090 | 0.817689 | 2.895479e-52 | -8.615850e-47 |
| Msa1131050 | Msa1388090 | 0.801807 | 7.564697e-49 | -8.615850e-47 |
| Msa0501410 | Msa1388090 | 0.814155 | 1.779579e-51 | -8.615850e-47 |
| Msa0865970 | Msa1388090 | 0.811969 | 5.364916e-51 | -8.615850e-47 |
| Msa0866070 | Msa1388090 | 0.812964 | 3.251861e-51 | -8.615850e-47 |
| Msa0899970 | Msa1388090 | 0.821285 | 4.380465e-53 | -8.615850e-47 |
| Msa0965080 | Msa1388090 | 0.800852 | 1.186478e-48 | -8.615850e-47 |
| Msa0965290 | Msa1388090 | 0.808688 | 2.738210e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388090 | MtrunA17_Chr5g0399641 | 97.445 | 548 | 12 | 2 | 1 | 546 | 1 | 548 | 0.0 | 1106 |
| Msa1388090 | MtrunA17_Chr4g0055691 | 65.766 | 555 | 137 | 9 | 6 | 544 | 4 | 521 | 0.0 | 717 |
| Msa1388090 | MtrunA17_Chr7g0250561 | 46.907 | 388 | 178 | 8 | 129 | 492 | 65 | 448 | 2.65e-119 | 359 |
| Msa1388090 | MtrunA17_Chr7g0250611 | 45.553 | 371 | 167 | 9 | 133 | 492 | 75 | 421 | 4.77e-109 | 332 |
| Msa1388090 | MtrunA17_Chr4g0039301 | 38.281 | 384 | 201 | 7 | 128 | 493 | 95 | 460 | 1.75e-84 | 272 |
| Msa1388090 | MtrunA17_Chr7g0260671 | 39.474 | 380 | 195 | 11 | 133 | 493 | 74 | 437 | 1.49e-80 | 261 |
| Msa1388090 | MtrunA17_Chr7g0260681 | 39.394 | 363 | 185 | 12 | 133 | 476 | 74 | 420 | 1.76e-76 | 248 |
| Msa1388090 | MtrunA17_Chr2g0283561 | 35.156 | 384 | 192 | 9 | 133 | 493 | 39 | 388 | 1.32e-63 | 214 |
| Msa1388090 | MtrunA17_Chr7g0214711 | 32.683 | 410 | 215 | 13 | 109 | 500 | 80 | 446 | 2.58e-57 | 199 |
| Msa1388090 | MtrunA17_Chr4g0046001 | 33.075 | 387 | 195 | 11 | 133 | 495 | 13 | 359 | 4.84e-52 | 182 |
| Msa1388090 | MtrunA17_Chr4g0046011 | 33.333 | 387 | 194 | 12 | 133 | 495 | 4 | 350 | 2.55e-51 | 180 |
| Msa1388090 | MtrunA17_Chr4g0041311 | 29.250 | 400 | 217 | 10 | 129 | 493 | 24 | 392 | 5.51e-49 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388090 | AT4G16820.1 | 55.179 | 531 | 198 | 10 | 25 | 546 | 18 | 517 | 0.0 | 560 |
| Msa1388090 | AT2G44810.2 | 50.136 | 369 | 170 | 7 | 133 | 494 | 86 | 447 | 4.61e-123 | 369 |
| Msa1388090 | AT2G44810.1 | 50.413 | 363 | 166 | 7 | 139 | 494 | 2 | 357 | 1.25e-120 | 360 |
| Msa1388090 | AT1G30370.1 | 38.015 | 413 | 219 | 10 | 124 | 517 | 105 | 499 | 2.57e-86 | 277 |
| Msa1388090 | AT1G51440.1 | 41.463 | 369 | 172 | 10 | 137 | 481 | 91 | 439 | 1.97e-83 | 269 |
| Msa1388090 | AT1G06800.1 | 39.633 | 381 | 187 | 10 | 137 | 493 | 89 | 450 | 4.17e-79 | 258 |
| Msa1388090 | AT2G30550.1 | 39.227 | 362 | 186 | 7 | 137 | 479 | 105 | 451 | 7.44e-79 | 255 |
| Msa1388090 | AT1G06800.2 | 40.385 | 364 | 174 | 10 | 137 | 476 | 89 | 433 | 9.98e-79 | 254 |
| Msa1388090 | AT2G30550.2 | 38.830 | 376 | 196 | 8 | 137 | 493 | 105 | 465 | 6.53e-78 | 255 |
| Msa1388090 | AT2G31690.1 | 35.813 | 363 | 184 | 11 | 133 | 475 | 88 | 421 | 4.64e-65 | 220 |
| Msa1388090 | AT1G05800.1 | 35.833 | 360 | 185 | 9 | 133 | 475 | 80 | 410 | 6.84e-64 | 216 |
| Msa1388090 | AT4G18550.1 | 32.771 | 415 | 211 | 11 | 133 | 515 | 19 | 397 | 3.62e-59 | 202 |
| Msa1388090 | AT4G18550.2 | 32.771 | 415 | 211 | 11 | 133 | 515 | 36 | 414 | 4.94e-59 | 202 |
| Msa1388090 | AT1G06250.1 | 31.959 | 388 | 200 | 10 | 133 | 493 | 5 | 355 | 5.59e-54 | 189 |
| Msa1388090 | AT2G42690.1 | 32.468 | 385 | 204 | 8 | 137 | 493 | 8 | 364 | 2.86e-51 | 181 |
| Msa1388090 | AT4G18550.3 | 36.458 | 288 | 152 | 8 | 133 | 397 | 36 | 315 | 9.28e-46 | 164 |
| Msa1388090 | AT1G06250.2 | 30.797 | 276 | 140 | 7 | 234 | 493 | 1 | 241 | 4.80e-32 | 125 |
Find 134 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAATTGGATTACCTAAA+TGG | 0.127660 | tig0021032:-98512 | Msa1388090:CDS |
| CCTCGGGTAAATCGACTAAT+TGG | 0.206931 | tig0021032:+98319 | None:intergenic |
| GAAGACGCTGTAAGCGTTTC+AGG | 0.238955 | tig0021032:+98799 | None:intergenic |
| TAACCTAGATGAGTTGTTAT+TGG | 0.251262 | tig0021032:+99010 | None:intergenic |
| CTCTTAGCATTAGCTCTAAA+TGG | 0.258178 | tig0021032:+97691 | None:intergenic |
| CGCCTTTGTAAAGTTCAATA+AGG | 0.276950 | tig0021032:+98166 | None:intergenic |
| AAAAGATGAAGGTTGTTTAA+TGG | 0.278707 | tig0021032:+99046 | None:intergenic |
| TTTCTCCCGATGATATTTCT+TGG | 0.282496 | tig0021032:+98753 | None:intergenic |
| AGAGGCTTATTTACATTTAG+TGG | 0.289753 | tig0021032:-97737 | Msa1388090:CDS |
| ATGATGATTCCAAAGGCTTT+TGG | 0.306541 | tig0021032:+98955 | None:intergenic |
| GCCACCTCATCAACCCATTT+AGG | 0.326253 | tig0021032:+98498 | None:intergenic |
| GTTGTATTGGTTGTTGAAAC+TGG | 0.332759 | tig0021032:+98925 | None:intergenic |
| ACTCAACTTTGGGCTTTGAT+TGG | 0.339758 | tig0021032:+98268 | None:intergenic |
| ACAGCCACGGGTGGCACGTT+TGG | 0.344135 | tig0021032:+98060 | None:intergenic |
| TAATTTCCTCGGCCACCAAT+AGG | 0.366166 | tig0021032:+98094 | None:intergenic |
| CGGCGAGAGGTTGTTAGATA+TGG | 0.368122 | tig0021032:-98666 | Msa1388090:CDS |
| CATAAATCCACACTCAACTT+TGG | 0.371336 | tig0021032:+98257 | None:intergenic |
| CTGTAAGCGTTTCAGGTGGC+GGG | 0.378709 | tig0021032:+98806 | None:intergenic |
| TCTTCAGCTGCTTTAATCTC+TGG | 0.381476 | tig0021032:+98837 | None:intergenic |
| AACTTCCACTTGTCTTGAAT+GGG | 0.386150 | tig0021032:-98358 | Msa1388090:CDS |
| GTTGGAAGAGAACACTCCTT+TGG | 0.394244 | tig0021032:-97851 | Msa1388090:CDS |
| CGTGTTGGTAACAGAGCCTT+TGG | 0.394565 | tig0021032:-98018 | Msa1388090:CDS |
| TAAAAGAGAGATTGCAAGAA+TGG | 0.395214 | tig0021032:-98412 | Msa1388090:CDS |
| ATAAATCCACACTCAACTTT+GGG | 0.396883 | tig0021032:+98258 | None:intergenic |
| TCTTGATAGCCAAAAGCCTT+TGG | 0.405866 | tig0021032:-98964 | Msa1388090:CDS |
| GGATGACCCAGCGTTCTAGC+TGG | 0.407435 | tig0021032:-98461 | Msa1388090:CDS |
| ATCAATTGGATTACCTAAAT+GGG | 0.408997 | tig0021032:-98511 | Msa1388090:CDS |
| GGTTGTTAGATATGGTGATT+TGG | 0.409569 | tig0021032:-98658 | Msa1388090:CDS |
| GAACTTCCACTTGTCTTGAA+TGG | 0.412888 | tig0021032:-98359 | Msa1388090:CDS |
| GACTTAACCTAGCAAAACTA+TGG | 0.417487 | tig0021032:-98860 | Msa1388090:CDS |
| CTGTATGCCACATCATCAAT+TGG | 0.418121 | tig0021032:-98525 | Msa1388090:CDS |
| AATTTCCTCGGCCACCAATA+GGG | 0.421437 | tig0021032:+98095 | None:intergenic |
| ATGAGCTTGTACAAGACAAA+AGG | 0.423174 | tig0021032:-98237 | Msa1388090:CDS |
| TTGGAAGAGAACACTCCTTT+GGG | 0.425192 | tig0021032:-97850 | Msa1388090:CDS |
| GAATTAAGCATAACCGTTAC+CGG | 0.425326 | tig0021032:-98141 | Msa1388090:CDS |
| AAGAATTCCAAGGTTGTTAG+TGG | 0.426321 | tig0021032:-97886 | Msa1388090:CDS |
| ACATTTAGTGGATGGATACA+TGG | 0.441165 | tig0021032:-97725 | Msa1388090:CDS |
| AAACCAATAACAACTCATCT+AGG | 0.443716 | tig0021032:-99013 | Msa1388090:CDS |
| AATATCATGGCAGCAACGAC+TGG | 0.446528 | tig0021032:-98722 | Msa1388090:CDS |
| GATGAGGTGGCACCAGATCT+TGG | 0.447657 | tig0021032:-98486 | Msa1388090:CDS |
| CCCGCACGTGCTAATTTCCT+CGG | 0.448005 | tig0021032:+98083 | None:intergenic |
| TAGACAGGGATCCATGTCTA+TGG | 0.450095 | tig0021032:-97551 | Msa1388090:CDS |
| GTTGTTTAATGGAAGAAGAA+TGG | 0.450283 | tig0021032:+99057 | None:intergenic |
| CACTTCTTCAACAACGGACT+CGG | 0.454486 | tig0021032:+98194 | None:intergenic |
| GTGAAGGTTGTGAGCAGGTA+AGG | 0.457213 | tig0021032:+99115 | None:intergenic |
| GTAAGCGTTTCAGGTGGCGG+GGG | 0.458362 | tig0021032:+98808 | None:intergenic |
| CTTGTCTAATCTTAGTAGAC+AGG | 0.459042 | tig0021032:-97566 | Msa1388090:CDS |
| CTAGTGTCGCGCCAAGGCTA+TGG | 0.467757 | tig0021032:+98118 | None:intergenic |
| GCTGTAAGCGTTTCAGGTGG+CGG | 0.475077 | tig0021032:+98805 | None:intergenic |
| GTCTGAGTCTGAGCGTCCTC+GGG | 0.477426 | tig0021032:+98303 | None:intergenic |
| TCGCCGGAGGTTGTCATCCA+AGG | 0.480124 | tig0021032:+98683 | None:intergenic |
| GAAGGGGATGTTAGATCCCT+TGG | 0.480349 | tig0021032:-98700 | Msa1388090:CDS |
| TGGGTCATCCAACCAAGATC+TGG | 0.480411 | tig0021032:+98474 | None:intergenic |
| TGAAGAGAAGCAAAAGATGA+AGG | 0.480894 | tig0021032:+99035 | None:intergenic |
| GCTTCAGTTGTTGACATGGC+AGG | 0.485069 | tig0021032:+98603 | None:intergenic |
| TGGAGAATACTCCGCCGTCT+TGG | 0.486287 | tig0021032:+98773 | None:intergenic |
| TATTGGTTGTTGAAACTGGT+TGG | 0.487668 | tig0021032:+98929 | None:intergenic |
| AGTCTGAGTCTGAGCGTCCT+CGG | 0.490474 | tig0021032:+98302 | None:intergenic |
| AAAAGAGAGATTGCAAGAAT+GGG | 0.490721 | tig0021032:-98411 | Msa1388090:CDS |
| ACACACAAGACGTGATTACA+AGG | 0.492272 | tig0021032:-97951 | Msa1388090:CDS |
| CTCGGGTAAATCGACTAATT+GGG | 0.499666 | tig0021032:+98320 | None:intergenic |
| AACAACTCCACTAACAACCT+TGG | 0.499945 | tig0021032:+97879 | None:intergenic |
| ACAAGGACACCTCTTGATGA+TGG | 0.502751 | tig0021032:+98577 | None:intergenic |
| TGAGCTTGTACAAGACAAAA+GGG | 0.503559 | tig0021032:-98236 | Msa1388090:CDS |
| CCTTTGGGATATTCACATGT+TGG | 0.504000 | tig0021032:-97835 | Msa1388090:CDS |
| GAAATATCATCGGGAGAAAG+TGG | 0.505201 | tig0021032:-98749 | Msa1388090:CDS |
| CTTCAACAACGGACTCGGAT+AGG | 0.508893 | tig0021032:+98199 | None:intergenic |
| TCAGCATCGGGCTTCAAGTA+AGG | 0.510052 | tig0021032:+97781 | None:intergenic |
| CAACAAGCTATGTCAGCATC+GGG | 0.515189 | tig0021032:+97769 | None:intergenic |
| GCTTATTTACATTTAGTGGA+TGG | 0.516513 | tig0021032:-97733 | Msa1388090:CDS |
| GATGACCCAGCGTTCTAGCT+GGG | 0.518537 | tig0021032:-98460 | Msa1388090:CDS |
| GAAGAATGGCATCTGAAACT+AGG | 0.523536 | tig0021032:+99071 | None:intergenic |
| CAAGGACACCTCTTGATGAT+GGG | 0.525696 | tig0021032:+98578 | None:intergenic |
| TCATCAAGAGGTGTCCTTGT+CGG | 0.525857 | tig0021032:-98574 | Msa1388090:CDS |
| TTGTATACTAGTAAGGCTAA+AGG | 0.526986 | tig0021032:-97622 | Msa1388090:CDS |
| ATCCCTTGGATGACAACCTC+CGG | 0.528647 | tig0021032:-98686 | Msa1388090:CDS |
| ATCCAACCCAGCTAGAACGC+TGG | 0.529696 | tig0021032:+98454 | None:intergenic |
| GACGTGATTACAAGGGTGCC+AGG | 0.535150 | tig0021032:-97943 | Msa1388090:CDS |
| CGCGACACTAGCCCTATTGG+TGG | 0.536052 | tig0021032:-98106 | Msa1388090:CDS |
| TAGTGGAGTTGTTGATATGT+TGG | 0.537325 | tig0021032:-97869 | Msa1388090:CDS |
| TGTAAGCGTTTCAGGTGGCG+GGG | 0.538613 | tig0021032:+98807 | None:intergenic |
| ACCGTTACCGGCCATAGCCT+TGG | 0.539736 | tig0021032:-98129 | Msa1388090:CDS |
| ATGGCAGCAACGACTGGAAG+GGG | 0.541567 | tig0021032:-98716 | Msa1388090:CDS |
| ACCTAAATGGGTTGATGAGG+TGG | 0.548455 | tig0021032:-98499 | Msa1388090:CDS |
| ACTAGCCCTATTGGTGGCCG+AGG | 0.548502 | tig0021032:-98100 | Msa1388090:CDS |
| ATTCATGAAGATGATGGACT+AGG | 0.548753 | tig0021032:+97517 | None:intergenic |
| AGGTAATCCAATTGATGATG+TGG | 0.548802 | tig0021032:+98518 | None:intergenic |
| GATATTGTGATATCTCTTCG+TGG | 0.549518 | tig0021032:-98381 | Msa1388090:CDS |
| TTCAGCCCATTCAAGACAAG+TGG | 0.553127 | tig0021032:+98353 | None:intergenic |
| GGACGCTCAGACTCAGACTC+AGG | 0.556991 | tig0021032:-98298 | Msa1388090:CDS |
| CGCCGGAGGTTGTCATCCAA+GGG | 0.557417 | tig0021032:+98684 | None:intergenic |
| ACAACAAGCTATGTCAGCAT+CGG | 0.563181 | tig0021032:+97768 | None:intergenic |
| TCATGGCAGCAACGACTGGA+AGG | 0.564182 | tig0021032:-98718 | Msa1388090:CDS |
| CGCCTTATTGAACTTTACAA+AGG | 0.564214 | tig0021032:-98168 | Msa1388090:CDS |
| ATTCTCCAAGAAATATCATC+GGG | 0.566867 | tig0021032:-98758 | Msa1388090:CDS |
| AGCTTGTTGTCATGATCTAG+AGG | 0.571065 | tig0021032:-97755 | Msa1388090:CDS |
| TGATGTGGCATACAGACTCT+TGG | 0.573169 | tig0021032:+98533 | None:intergenic |
| TAAGCGTTTCAGGTGGCGGG+GGG | 0.576225 | tig0021032:+98809 | None:intergenic |
| GGGTGCTTCAGTTGTTGACA+TGG | 0.576279 | tig0021032:+98599 | None:intergenic |
| CCGAGGAAATTAGCACGTGC+GGG | 0.576932 | tig0021032:-98083 | Msa1388090:CDS |
| TCATTTGGCGGACCTCGTGT+TGG | 0.577348 | tig0021032:-98033 | Msa1388090:CDS |
| CATATCTAACAACCTCTCGC+CGG | 0.581786 | tig0021032:+98667 | None:intergenic |
| CATGGCAGCAACGACTGGAA+GGG | 0.583943 | tig0021032:-98717 | Msa1388090:CDS |
| AATTTGTGAAGGTTGTGAGC+AGG | 0.587076 | tig0021032:+99110 | None:intergenic |
| GCCAAGGCTATGGCCGGTAA+CGG | 0.591069 | tig0021032:+98128 | None:intergenic |
| TATTCTCCAAGAAATATCAT+CGG | 0.595846 | tig0021032:-98759 | Msa1388090:CDS |
| AGAAAGTGGAGGGAATATCA+TGG | 0.601338 | tig0021032:-98735 | Msa1388090:CDS |
| TTGGTTGATGATGATTCCAA+AGG | 0.613659 | tig0021032:+98948 | None:intergenic |
| AGGTGGCACCAGATCTTGGT+TGG | 0.618491 | tig0021032:-98482 | Msa1388090:CDS |
| GGATGACAACCTCCGGCGAG+AGG | 0.618831 | tig0021032:-98679 | Msa1388090:CDS |
| CAGACTCAGACTCAGGCACA+AGG | 0.619166 | tig0021032:-98291 | Msa1388090:CDS |
| TTAGTGCTTGAAATTTGTGA+AGG | 0.626013 | tig0021032:+99099 | None:intergenic |
| TCAAAGCCCAAAGTTGAGTG+TGG | 0.627127 | tig0021032:-98264 | Msa1388090:CDS |
| ACAACAAGCAGCCATAGACA+TGG | 0.628855 | tig0021032:+97540 | None:intergenic |
| GCGTCGCACTTCTTCAACAA+CGG | 0.630718 | tig0021032:+98188 | None:intergenic |
| TTGTCTAATCTTAGTAGACA+GGG | 0.632883 | tig0021032:-97565 | Msa1388090:CDS |
| ATCTAACAACCTCTCGCCGG+AGG | 0.634684 | tig0021032:+98670 | None:intergenic |
| TGAAGCACCCCATCATCAAG+AGG | 0.635362 | tig0021032:-98586 | Msa1388090:CDS |
| AAGGACACCTCTTGATGATG+GGG | 0.638913 | tig0021032:+98579 | None:intergenic |
| TGTCGCGCCAAGGCTATGGC+CGG | 0.642253 | tig0021032:+98122 | None:intergenic |
| ACAGCGTCTTCTTTCCAAGA+CGG | 0.643880 | tig0021032:-98787 | Msa1388090:CDS |
| TCTGTTAATCTTAATAGACA+AGG | 0.646433 | tig0021032:-97595 | Msa1388090:CDS |
| TATCATCGGGAGAAAGTGGA+GGG | 0.648802 | tig0021032:-98745 | Msa1388090:CDS |
| ATTACCTAAATGGGTTGATG+AGG | 0.663925 | tig0021032:-98502 | Msa1388090:CDS |
| ATATCATCGGGAGAAAGTGG+AGG | 0.666029 | tig0021032:-98746 | Msa1388090:CDS |
| ATAGGGCTAGTGTCGCGCCA+AGG | 0.667674 | tig0021032:+98112 | None:intergenic |
| CCAATTAGTCGATTTACCCG+AGG | 0.667868 | tig0021032:-98319 | Msa1388090:CDS |
| GACGCTGTAAGCGTTTCAGG+TGG | 0.674999 | tig0021032:+98802 | None:intergenic |
| TTTATAAGATCTCTCCGACA+AGG | 0.680022 | tig0021032:+98560 | None:intergenic |
| GCGTCTTCTTTCCAAGACGG+CGG | 0.680773 | tig0021032:-98784 | Msa1388090:CDS |
| CCAACATGTGAATATCCCAA+AGG | 0.681313 | tig0021032:+97835 | None:intergenic |
| GAGCTTGTACAAGACAAAAG+GGG | 0.708452 | tig0021032:-98235 | Msa1388090:CDS |
| CACACAAGACGTGATTACAA+GGG | 0.729372 | tig0021032:-97950 | Msa1388090:CDS |
| AAGGCTCTGTTACCAACACG+AGG | 0.743509 | tig0021032:+98021 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAATTAAGAATTCCA+AGG | - | tig0021032:98760-98779 | Msa1388090:CDS | 20.0% |
| !! | AAAAAAGTTGTATACTAGTA+AGG | - | tig0021032:99027-99046 | Msa1388090:CDS | 20.0% |
| !! | AGAAAAAATTAAGAATTCCA+AGG | - | tig0021032:98760-98779 | Msa1388090:CDS | 20.0% |
| !! | AAAAAAGTTGTATACTAGTA+AGG | - | tig0021032:99027-99046 | Msa1388090:CDS | 20.0% |
| ! | AAAAGATGAAGGTTGTTTAA+TGG | + | tig0021032:97613-97632 | None:intergenic | 25.0% |
| !!! | TTTTTGTCACTTTTTTGGAT+AGG | + | tig0021032:97756-97775 | None:intergenic | 25.0% |
| ! | ATCCAAAAAAGTGACAAAAA+AGG | - | tig0021032:97756-97775 | Msa1388090:CDS | 25.0% |
| !!! | TTCCTTTTTTGTCACTTTTT+TGG | + | tig0021032:97761-97780 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAACTTTCTTGA+AGG | - | tig0021032:97774-97793 | Msa1388090:CDS | 25.0% |
| ! | TATTCTCCAAGAAATATCAT+CGG | - | tig0021032:97897-97916 | Msa1388090:CDS | 25.0% |
| ! | ATCAATTGGATTACCTAAAT+GGG | - | tig0021032:98145-98164 | Msa1388090:CDS | 25.0% |
| ! | TCTGTTAATCTTAATAGACA+AGG | - | tig0021032:99061-99080 | Msa1388090:CDS | 25.0% |
| ! | AAAAGATGAAGGTTGTTTAA+TGG | + | tig0021032:97613-97632 | None:intergenic | 25.0% |
| !!! | TTTTTGTCACTTTTTTGGAT+AGG | + | tig0021032:97756-97775 | None:intergenic | 25.0% |
| ! | ATCCAAAAAAGTGACAAAAA+AGG | - | tig0021032:97756-97775 | Msa1388090:CDS | 25.0% |
| !!! | TTCCTTTTTTGTCACTTTTT+TGG | + | tig0021032:97761-97780 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAACTTTCTTGA+AGG | - | tig0021032:97774-97793 | Msa1388090:CDS | 25.0% |
| ! | TATTCTCCAAGAAATATCAT+CGG | - | tig0021032:97897-97916 | Msa1388090:CDS | 25.0% |
| ! | ATCAATTGGATTACCTAAAT+GGG | - | tig0021032:98145-98164 | Msa1388090:CDS | 25.0% |
| ! | TCTGTTAATCTTAATAGACA+AGG | - | tig0021032:99061-99080 | Msa1388090:CDS | 25.0% |
| TTAGTGCTTGAAATTTGTGA+AGG | + | tig0021032:97560-97579 | None:intergenic | 30.0% | |
| GTTGTTTAATGGAAGAAGAA+TGG | + | tig0021032:97602-97621 | None:intergenic | 30.0% | |
| AAACCAATAACAACTCATCT+AGG | - | tig0021032:97643-97662 | Msa1388090:CDS | 30.0% | |
| TAACCTAGATGAGTTGTTAT+TGG | + | tig0021032:97649-97668 | None:intergenic | 30.0% | |
| !!! | CTTTTTTGGATAGGTTGTAT+TGG | + | tig0021032:97747-97766 | None:intergenic | 30.0% |
| ATTCTCCAAGAAATATCATC+GGG | - | tig0021032:97898-97917 | Msa1388090:CDS | 30.0% | |
| CATCAATTGGATTACCTAAA+TGG | - | tig0021032:98144-98163 | Msa1388090:CDS | 30.0% | |
| TAAAAGAGAGATTGCAAGAA+TGG | - | tig0021032:98244-98263 | Msa1388090:CDS | 30.0% | |
| AAAAGAGAGATTGCAAGAAT+GGG | - | tig0021032:98245-98264 | Msa1388090:CDS | 30.0% | |
| ATAAATCCACACTCAACTTT+GGG | + | tig0021032:98401-98420 | None:intergenic | 30.0% | |
| AGAGGCTTATTTACATTTAG+TGG | - | tig0021032:98919-98938 | Msa1388090:CDS | 30.0% | |
| GCTTATTTACATTTAGTGGA+TGG | - | tig0021032:98923-98942 | Msa1388090:CDS | 30.0% | |
| TTGTATACTAGTAAGGCTAA+AGG | - | tig0021032:99034-99053 | Msa1388090:CDS | 30.0% | |
| TTGTCTAATCTTAGTAGACA+GGG | - | tig0021032:99091-99110 | Msa1388090:CDS | 30.0% | |
| TTAGTGCTTGAAATTTGTGA+AGG | + | tig0021032:97560-97579 | None:intergenic | 30.0% | |
| GTTGTTTAATGGAAGAAGAA+TGG | + | tig0021032:97602-97621 | None:intergenic | 30.0% | |
| AAACCAATAACAACTCATCT+AGG | - | tig0021032:97643-97662 | Msa1388090:CDS | 30.0% | |
| TAACCTAGATGAGTTGTTAT+TGG | + | tig0021032:97649-97668 | None:intergenic | 30.0% | |
| !!! | CTTTTTTGGATAGGTTGTAT+TGG | + | tig0021032:97747-97766 | None:intergenic | 30.0% |
| ATTCTCCAAGAAATATCATC+GGG | - | tig0021032:97898-97917 | Msa1388090:CDS | 30.0% | |
| CATCAATTGGATTACCTAAA+TGG | - | tig0021032:98144-98163 | Msa1388090:CDS | 30.0% | |
| TAAAAGAGAGATTGCAAGAA+TGG | - | tig0021032:98244-98263 | Msa1388090:CDS | 30.0% | |
| AAAAGAGAGATTGCAAGAAT+GGG | - | tig0021032:98245-98264 | Msa1388090:CDS | 30.0% | |
| ATAAATCCACACTCAACTTT+GGG | + | tig0021032:98401-98420 | None:intergenic | 30.0% | |
| AGAGGCTTATTTACATTTAG+TGG | - | tig0021032:98919-98938 | Msa1388090:CDS | 30.0% | |
| GCTTATTTACATTTAGTGGA+TGG | - | tig0021032:98923-98942 | Msa1388090:CDS | 30.0% | |
| TTGTATACTAGTAAGGCTAA+AGG | - | tig0021032:99034-99053 | Msa1388090:CDS | 30.0% | |
| TTGTCTAATCTTAGTAGACA+GGG | - | tig0021032:99091-99110 | Msa1388090:CDS | 30.0% | |
| TGAAGAGAAGCAAAAGATGA+AGG | + | tig0021032:97624-97643 | None:intergenic | 35.0% | |
| ! | ATGATGATTCCAAAGGCTTT+TGG | + | tig0021032:97704-97723 | None:intergenic | 35.0% |
| !! | TTGGTTGATGATGATTCCAA+AGG | + | tig0021032:97711-97730 | None:intergenic | 35.0% |
| ! | TATTGGTTGTTGAAACTGGT+TGG | + | tig0021032:97730-97749 | None:intergenic | 35.0% |
| !! | GTTGTATTGGTTGTTGAAAC+TGG | + | tig0021032:97734-97753 | None:intergenic | 35.0% |
| GACTTAACCTAGCAAAACTA+TGG | - | tig0021032:97796-97815 | Msa1388090:CDS | 35.0% | |
| TTTCTCCCGATGATATTTCT+TGG | + | tig0021032:97906-97925 | None:intergenic | 35.0% | |
| GGTTGTTAGATATGGTGATT+TGG | - | tig0021032:97998-98017 | Msa1388090:CDS | 35.0% | |
| TTTATAAGATCTCTCCGACA+AGG | + | tig0021032:98099-98118 | None:intergenic | 35.0% | |
| !! | AGGTAATCCAATTGATGATG+TGG | + | tig0021032:98141-98160 | None:intergenic | 35.0% |
| !! | ATTACCTAAATGGGTTGATG+AGG | - | tig0021032:98154-98173 | Msa1388090:CDS | 35.0% |
| GATATTGTGATATCTCTTCG+TGG | - | tig0021032:98275-98294 | Msa1388090:CDS | 35.0% | |
| AACTTCCACTTGTCTTGAAT+GGG | - | tig0021032:98298-98317 | Msa1388090:CDS | 35.0% | |
| CATAAATCCACACTCAACTT+TGG | + | tig0021032:98402-98421 | None:intergenic | 35.0% | |
| ATGAGCTTGTACAAGACAAA+AGG | - | tig0021032:98419-98438 | Msa1388090:CDS | 35.0% | |
| TGAGCTTGTACAAGACAAAA+GGG | - | tig0021032:98420-98439 | Msa1388090:CDS | 35.0% | |
| ! | CGCCTTATTGAACTTTACAA+AGG | - | tig0021032:98488-98507 | Msa1388090:CDS | 35.0% |
| CGCCTTTGTAAAGTTCAATA+AGG | + | tig0021032:98493-98512 | None:intergenic | 35.0% | |
| GAATTAAGCATAACCGTTAC+CGG | - | tig0021032:98515-98534 | Msa1388090:CDS | 35.0% | |
| !! | CTTTTCAAGATGTTCTCCAA+AGG | + | tig0021032:98657-98676 | None:intergenic | 35.0% |
| TCCTCGCTTAAAAATATTCC+TGG | + | tig0021032:98734-98753 | None:intergenic | 35.0% | |
| AAGAATTCCAAGGTTGTTAG+TGG | - | tig0021032:98770-98789 | Msa1388090:CDS | 35.0% | |
| TAGTGGAGTTGTTGATATGT+TGG | - | tig0021032:98787-98806 | Msa1388090:CDS | 35.0% | |
| ! | ACATTTAGTGGATGGATACA+TGG | - | tig0021032:98931-98950 | Msa1388090:CDS | 35.0% |
| !! | CTCTTAGCATTAGCTCTAAA+TGG | + | tig0021032:98968-98987 | None:intergenic | 35.0% |
| CTTGTCTAATCTTAGTAGAC+AGG | - | tig0021032:99090-99109 | Msa1388090:CDS | 35.0% | |
| TGAAGAGAAGCAAAAGATGA+AGG | + | tig0021032:97624-97643 | None:intergenic | 35.0% | |
| ! | ATGATGATTCCAAAGGCTTT+TGG | + | tig0021032:97704-97723 | None:intergenic | 35.0% |
| !! | TTGGTTGATGATGATTCCAA+AGG | + | tig0021032:97711-97730 | None:intergenic | 35.0% |
| ! | TATTGGTTGTTGAAACTGGT+TGG | + | tig0021032:97730-97749 | None:intergenic | 35.0% |
| !! | GTTGTATTGGTTGTTGAAAC+TGG | + | tig0021032:97734-97753 | None:intergenic | 35.0% |
| GACTTAACCTAGCAAAACTA+TGG | - | tig0021032:97796-97815 | Msa1388090:CDS | 35.0% | |
| TTTCTCCCGATGATATTTCT+TGG | + | tig0021032:97906-97925 | None:intergenic | 35.0% | |
| GGTTGTTAGATATGGTGATT+TGG | - | tig0021032:97998-98017 | Msa1388090:CDS | 35.0% | |
| TTTATAAGATCTCTCCGACA+AGG | + | tig0021032:98099-98118 | None:intergenic | 35.0% | |
| !! | AGGTAATCCAATTGATGATG+TGG | + | tig0021032:98141-98160 | None:intergenic | 35.0% |
| !! | ATTACCTAAATGGGTTGATG+AGG | - | tig0021032:98154-98173 | Msa1388090:CDS | 35.0% |
| GATATTGTGATATCTCTTCG+TGG | - | tig0021032:98275-98294 | Msa1388090:CDS | 35.0% | |
| AACTTCCACTTGTCTTGAAT+GGG | - | tig0021032:98298-98317 | Msa1388090:CDS | 35.0% | |
| CATAAATCCACACTCAACTT+TGG | + | tig0021032:98402-98421 | None:intergenic | 35.0% | |
| ATGAGCTTGTACAAGACAAA+AGG | - | tig0021032:98419-98438 | Msa1388090:CDS | 35.0% | |
| TGAGCTTGTACAAGACAAAA+GGG | - | tig0021032:98420-98439 | Msa1388090:CDS | 35.0% | |
| ! | CGCCTTATTGAACTTTACAA+AGG | - | tig0021032:98488-98507 | Msa1388090:CDS | 35.0% |
| CGCCTTTGTAAAGTTCAATA+AGG | + | tig0021032:98493-98512 | None:intergenic | 35.0% | |
| GAATTAAGCATAACCGTTAC+CGG | - | tig0021032:98515-98534 | Msa1388090:CDS | 35.0% | |
| !! | CTTTTCAAGATGTTCTCCAA+AGG | + | tig0021032:98657-98676 | None:intergenic | 35.0% |
| TCCTCGCTTAAAAATATTCC+TGG | + | tig0021032:98734-98753 | None:intergenic | 35.0% | |
| AAGAATTCCAAGGTTGTTAG+TGG | - | tig0021032:98770-98789 | Msa1388090:CDS | 35.0% | |
| TAGTGGAGTTGTTGATATGT+TGG | - | tig0021032:98787-98806 | Msa1388090:CDS | 35.0% | |
| ! | ACATTTAGTGGATGGATACA+TGG | - | tig0021032:98931-98950 | Msa1388090:CDS | 35.0% |
| !! | CTCTTAGCATTAGCTCTAAA+TGG | + | tig0021032:98968-98987 | None:intergenic | 35.0% |
| CTTGTCTAATCTTAGTAGAC+AGG | - | tig0021032:99090-99109 | Msa1388090:CDS | 35.0% | |
| AATTTGTGAAGGTTGTGAGC+AGG | + | tig0021032:97549-97568 | None:intergenic | 40.0% | |
| ! | GAAGAATGGCATCTGAAACT+AGG | + | tig0021032:97588-97607 | None:intergenic | 40.0% |
| ! | TCTTGATAGCCAAAAGCCTT+TGG | - | tig0021032:97692-97711 | Msa1388090:CDS | 40.0% |
| ! | TCTTCAGCTGCTTTAATCTC+TGG | + | tig0021032:97822-97841 | None:intergenic | 40.0% |
| GAAATATCATCGGGAGAAAG+TGG | - | tig0021032:97907-97926 | Msa1388090:CDS | 40.0% | |
| AGAAAGTGGAGGGAATATCA+TGG | - | tig0021032:97921-97940 | Msa1388090:CDS | 40.0% | |
| CTGTATGCCACATCATCAAT+TGG | - | tig0021032:98131-98150 | Msa1388090:CDS | 40.0% | |
| GAACTTCCACTTGTCTTGAA+TGG | - | tig0021032:98297-98316 | Msa1388090:CDS | 40.0% | |
| CTCGGGTAAATCGACTAATT+GGG | + | tig0021032:98339-98358 | None:intergenic | 40.0% | |
| ! | ACTCAACTTTGGGCTTTGAT+TGG | + | tig0021032:98391-98410 | None:intergenic | 40.0% |
| GAGCTTGTACAAGACAAAAG+GGG | - | tig0021032:98421-98440 | Msa1388090:CDS | 40.0% | |
| CCAAATGAAAAAACAGCCAC+GGG | + | tig0021032:98611-98630 | None:intergenic | 40.0% | |
| GCCAAATGAAAAAACAGCCA+CGG | + | tig0021032:98612-98631 | None:intergenic | 40.0% | |
| !!! | GTGGCTGTTTTTTCATTTGG+CGG | - | tig0021032:98611-98630 | Msa1388090:CDS | 40.0% |
| ACACACAAGACGTGATTACA+AGG | - | tig0021032:98705-98724 | Msa1388090:CDS | 40.0% | |
| CACACAAGACGTGATTACAA+GGG | - | tig0021032:98706-98725 | Msa1388090:CDS | 40.0% | |
| !! | GCCAGGAATATTTTTAAGCG+AGG | - | tig0021032:98730-98749 | Msa1388090:CDS | 40.0% |
| AACAACTCCACTAACAACCT+TGG | + | tig0021032:98780-98799 | None:intergenic | 40.0% | |
| TTGGAAGAGAACACTCCTTT+GGG | - | tig0021032:98806-98825 | Msa1388090:CDS | 40.0% | |
| CCAACATGTGAATATCCCAA+AGG | + | tig0021032:98824-98843 | None:intergenic | 40.0% | |
| !! | CCTTTGGGATATTCACATGT+TGG | - | tig0021032:98821-98840 | Msa1388090:CDS | 40.0% |
| ACAACAAGCTATGTCAGCAT+CGG | + | tig0021032:98891-98910 | None:intergenic | 40.0% | |
| !! | AGCTTGTTGTCATGATCTAG+AGG | - | tig0021032:98901-98920 | Msa1388090:CDS | 40.0% |
| AATTTGTGAAGGTTGTGAGC+AGG | + | tig0021032:97549-97568 | None:intergenic | 40.0% | |
| ! | GAAGAATGGCATCTGAAACT+AGG | + | tig0021032:97588-97607 | None:intergenic | 40.0% |
| ! | TCTTGATAGCCAAAAGCCTT+TGG | - | tig0021032:97692-97711 | Msa1388090:CDS | 40.0% |
| ! | TCTTCAGCTGCTTTAATCTC+TGG | + | tig0021032:97822-97841 | None:intergenic | 40.0% |
| GAAATATCATCGGGAGAAAG+TGG | - | tig0021032:97907-97926 | Msa1388090:CDS | 40.0% | |
| AGAAAGTGGAGGGAATATCA+TGG | - | tig0021032:97921-97940 | Msa1388090:CDS | 40.0% | |
| CTGTATGCCACATCATCAAT+TGG | - | tig0021032:98131-98150 | Msa1388090:CDS | 40.0% | |
| GAACTTCCACTTGTCTTGAA+TGG | - | tig0021032:98297-98316 | Msa1388090:CDS | 40.0% | |
| CTCGGGTAAATCGACTAATT+GGG | + | tig0021032:98339-98358 | None:intergenic | 40.0% | |
| ! | ACTCAACTTTGGGCTTTGAT+TGG | + | tig0021032:98391-98410 | None:intergenic | 40.0% |
| GAGCTTGTACAAGACAAAAG+GGG | - | tig0021032:98421-98440 | Msa1388090:CDS | 40.0% | |
| CCAAATGAAAAAACAGCCAC+GGG | + | tig0021032:98611-98630 | None:intergenic | 40.0% | |
| GCCAAATGAAAAAACAGCCA+CGG | + | tig0021032:98612-98631 | None:intergenic | 40.0% | |
| !!! | GTGGCTGTTTTTTCATTTGG+CGG | - | tig0021032:98611-98630 | Msa1388090:CDS | 40.0% |
| ACACACAAGACGTGATTACA+AGG | - | tig0021032:98705-98724 | Msa1388090:CDS | 40.0% | |
| CACACAAGACGTGATTACAA+GGG | - | tig0021032:98706-98725 | Msa1388090:CDS | 40.0% | |
| !! | GCCAGGAATATTTTTAAGCG+AGG | - | tig0021032:98730-98749 | Msa1388090:CDS | 40.0% |
| AACAACTCCACTAACAACCT+TGG | + | tig0021032:98780-98799 | None:intergenic | 40.0% | |
| TTGGAAGAGAACACTCCTTT+GGG | - | tig0021032:98806-98825 | Msa1388090:CDS | 40.0% | |
| CCAACATGTGAATATCCCAA+AGG | + | tig0021032:98824-98843 | None:intergenic | 40.0% | |
| !! | CCTTTGGGATATTCACATGT+TGG | - | tig0021032:98821-98840 | Msa1388090:CDS | 40.0% |
| ACAACAAGCTATGTCAGCAT+CGG | + | tig0021032:98891-98910 | None:intergenic | 40.0% | |
| !! | AGCTTGTTGTCATGATCTAG+AGG | - | tig0021032:98901-98920 | Msa1388090:CDS | 40.0% |
| !! | TCTCTGGCCATAGTTTTGCT+AGG | + | tig0021032:97806-97825 | None:intergenic | 45.0% |
| ACAGCGTCTTCTTTCCAAGA+CGG | - | tig0021032:97869-97888 | Msa1388090:CDS | 45.0% | |
| ATATCATCGGGAGAAAGTGG+AGG | - | tig0021032:97910-97929 | Msa1388090:CDS | 45.0% | |
| TATCATCGGGAGAAAGTGGA+GGG | - | tig0021032:97911-97930 | Msa1388090:CDS | 45.0% | |
| AATATCATGGCAGCAACGAC+TGG | - | tig0021032:97934-97953 | Msa1388090:CDS | 45.0% | |
| CATATCTAACAACCTCTCGC+CGG | + | tig0021032:97992-98011 | None:intergenic | 45.0% | |
| !! | AAGGACACCTCTTGATGATG+GGG | + | tig0021032:98080-98099 | None:intergenic | 45.0% |
| ! | CAAGGACACCTCTTGATGAT+GGG | + | tig0021032:98081-98100 | None:intergenic | 45.0% |
| ACAAGGACACCTCTTGATGA+TGG | + | tig0021032:98082-98101 | None:intergenic | 45.0% | |
| !! | TCATCAAGAGGTGTCCTTGT+CGG | - | tig0021032:98082-98101 | Msa1388090:CDS | 45.0% |
| TGATGTGGCATACAGACTCT+TGG | + | tig0021032:98126-98145 | None:intergenic | 45.0% | |
| !! | ACCTAAATGGGTTGATGAGG+TGG | - | tig0021032:98157-98176 | Msa1388090:CDS | 45.0% |
| TTCAGCCCATTCAAGACAAG+TGG | + | tig0021032:98306-98325 | None:intergenic | 45.0% | |
| CCTCGGGTAAATCGACTAAT+TGG | + | tig0021032:98340-98359 | None:intergenic | 45.0% | |
| ! | CCAATTAGTCGATTTACCCG+AGG | - | tig0021032:98337-98356 | Msa1388090:CDS | 45.0% |
| TCAAAGCCCAAAGTTGAGTG+TGG | - | tig0021032:98392-98411 | Msa1388090:CDS | 45.0% | |
| ! | CACTTCTTCAACAACGGACT+CGG | + | tig0021032:98465-98484 | None:intergenic | 45.0% |
| AATTTCCTCGGCCACCAATA+GGG | + | tig0021032:98564-98583 | None:intergenic | 45.0% | |
| TAATTTCCTCGGCCACCAAT+AGG | + | tig0021032:98565-98584 | None:intergenic | 45.0% | |
| AATGAAAAAACAGCCACGGG+TGG | + | tig0021032:98608-98627 | None:intergenic | 45.0% | |
| !!! | CCCGTGGCTGTTTTTTCATT+TGG | - | tig0021032:98608-98627 | Msa1388090:CDS | 45.0% |
| GTTGGAAGAGAACACTCCTT+TGG | - | tig0021032:98805-98824 | Msa1388090:CDS | 45.0% | |
| CAACAAGCTATGTCAGCATC+GGG | + | tig0021032:98890-98909 | None:intergenic | 45.0% | |
| TAGACAGGGATCCATGTCTA+TGG | - | tig0021032:99105-99124 | Msa1388090:CDS | 45.0% | |
| ACAACAAGCAGCCATAGACA+TGG | + | tig0021032:99119-99138 | None:intergenic | 45.0% | |
| !! | TCTCTGGCCATAGTTTTGCT+AGG | + | tig0021032:97806-97825 | None:intergenic | 45.0% |
| ACAGCGTCTTCTTTCCAAGA+CGG | - | tig0021032:97869-97888 | Msa1388090:CDS | 45.0% | |
| ATATCATCGGGAGAAAGTGG+AGG | - | tig0021032:97910-97929 | Msa1388090:CDS | 45.0% | |
| TATCATCGGGAGAAAGTGGA+GGG | - | tig0021032:97911-97930 | Msa1388090:CDS | 45.0% | |
| AATATCATGGCAGCAACGAC+TGG | - | tig0021032:97934-97953 | Msa1388090:CDS | 45.0% | |
| CATATCTAACAACCTCTCGC+CGG | + | tig0021032:97992-98011 | None:intergenic | 45.0% | |
| !! | AAGGACACCTCTTGATGATG+GGG | + | tig0021032:98080-98099 | None:intergenic | 45.0% |
| ! | CAAGGACACCTCTTGATGAT+GGG | + | tig0021032:98081-98100 | None:intergenic | 45.0% |
| ACAAGGACACCTCTTGATGA+TGG | + | tig0021032:98082-98101 | None:intergenic | 45.0% | |
| !! | TCATCAAGAGGTGTCCTTGT+CGG | - | tig0021032:98082-98101 | Msa1388090:CDS | 45.0% |
| TGATGTGGCATACAGACTCT+TGG | + | tig0021032:98126-98145 | None:intergenic | 45.0% | |
| !! | ACCTAAATGGGTTGATGAGG+TGG | - | tig0021032:98157-98176 | Msa1388090:CDS | 45.0% |
| TTCAGCCCATTCAAGACAAG+TGG | + | tig0021032:98306-98325 | None:intergenic | 45.0% | |
| CCTCGGGTAAATCGACTAAT+TGG | + | tig0021032:98340-98359 | None:intergenic | 45.0% | |
| ! | CCAATTAGTCGATTTACCCG+AGG | - | tig0021032:98337-98356 | Msa1388090:CDS | 45.0% |
| TCAAAGCCCAAAGTTGAGTG+TGG | - | tig0021032:98392-98411 | Msa1388090:CDS | 45.0% | |
| ! | CACTTCTTCAACAACGGACT+CGG | + | tig0021032:98465-98484 | None:intergenic | 45.0% |
| AATTTCCTCGGCCACCAATA+GGG | + | tig0021032:98564-98583 | None:intergenic | 45.0% | |
| TAATTTCCTCGGCCACCAAT+AGG | + | tig0021032:98565-98584 | None:intergenic | 45.0% | |
| AATGAAAAAACAGCCACGGG+TGG | + | tig0021032:98608-98627 | None:intergenic | 45.0% | |
| !!! | CCCGTGGCTGTTTTTTCATT+TGG | - | tig0021032:98608-98627 | Msa1388090:CDS | 45.0% |
| GTTGGAAGAGAACACTCCTT+TGG | - | tig0021032:98805-98824 | Msa1388090:CDS | 45.0% | |
| CAACAAGCTATGTCAGCATC+GGG | + | tig0021032:98890-98909 | None:intergenic | 45.0% | |
| TAGACAGGGATCCATGTCTA+TGG | - | tig0021032:99105-99124 | Msa1388090:CDS | 45.0% | |
| ACAACAAGCAGCCATAGACA+TGG | + | tig0021032:99119-99138 | None:intergenic | 45.0% | |
| GTGAAGGTTGTGAGCAGGTA+AGG | + | tig0021032:97544-97563 | None:intergenic | 50.0% | |
| GAAGACGCTGTAAGCGTTTC+AGG | + | tig0021032:97860-97879 | None:intergenic | 50.0% | |
| GAAGGGGATGTTAGATCCCT+TGG | - | tig0021032:97956-97975 | Msa1388090:CDS | 50.0% | |
| ATCCCTTGGATGACAACCTC+CGG | - | tig0021032:97970-97989 | Msa1388090:CDS | 50.0% | |
| CGGCGAGAGGTTGTTAGATA+TGG | - | tig0021032:97990-98009 | Msa1388090:CDS | 50.0% | |
| GCTTCAGTTGTTGACATGGC+AGG | + | tig0021032:98056-98075 | None:intergenic | 50.0% | |
| GGGTGCTTCAGTTGTTGACA+TGG | + | tig0021032:98060-98079 | None:intergenic | 50.0% | |
| ! | TGAAGCACCCCATCATCAAG+AGG | - | tig0021032:98070-98089 | Msa1388090:CDS | 50.0% |
| GCCACCTCATCAACCCATTT+AGG | + | tig0021032:98161-98180 | None:intergenic | 50.0% | |
| TGGGTCATCCAACCAAGATC+TGG | + | tig0021032:98185-98204 | None:intergenic | 50.0% | |
| ! | CTTCAACAACGGACTCGGAT+AGG | + | tig0021032:98460-98479 | None:intergenic | 50.0% |
| GCGTCGCACTTCTTCAACAA+CGG | + | tig0021032:98471-98490 | None:intergenic | 50.0% | |
| AAGGCTCTGTTACCAACACG+AGG | + | tig0021032:98638-98657 | None:intergenic | 50.0% | |
| !! | CGTGTTGGTAACAGAGCCTT+TGG | - | tig0021032:98638-98657 | Msa1388090:CDS | 50.0% |
| ! | TCAGCATCGGGCTTCAAGTA+AGG | + | tig0021032:98878-98897 | None:intergenic | 50.0% |
| GTGAAGGTTGTGAGCAGGTA+AGG | + | tig0021032:97544-97563 | None:intergenic | 50.0% | |
| GAAGACGCTGTAAGCGTTTC+AGG | + | tig0021032:97860-97879 | None:intergenic | 50.0% | |
| GAAGGGGATGTTAGATCCCT+TGG | - | tig0021032:97956-97975 | Msa1388090:CDS | 50.0% | |
| ATCCCTTGGATGACAACCTC+CGG | - | tig0021032:97970-97989 | Msa1388090:CDS | 50.0% | |
| CGGCGAGAGGTTGTTAGATA+TGG | - | tig0021032:97990-98009 | Msa1388090:CDS | 50.0% | |
| GCTTCAGTTGTTGACATGGC+AGG | + | tig0021032:98056-98075 | None:intergenic | 50.0% | |
| GGGTGCTTCAGTTGTTGACA+TGG | + | tig0021032:98060-98079 | None:intergenic | 50.0% | |
| ! | TGAAGCACCCCATCATCAAG+AGG | - | tig0021032:98070-98089 | Msa1388090:CDS | 50.0% |
| GCCACCTCATCAACCCATTT+AGG | + | tig0021032:98161-98180 | None:intergenic | 50.0% | |
| TGGGTCATCCAACCAAGATC+TGG | + | tig0021032:98185-98204 | None:intergenic | 50.0% | |
| ! | CTTCAACAACGGACTCGGAT+AGG | + | tig0021032:98460-98479 | None:intergenic | 50.0% |
| GCGTCGCACTTCTTCAACAA+CGG | + | tig0021032:98471-98490 | None:intergenic | 50.0% | |
| AAGGCTCTGTTACCAACACG+AGG | + | tig0021032:98638-98657 | None:intergenic | 50.0% | |
| !! | CGTGTTGGTAACAGAGCCTT+TGG | - | tig0021032:98638-98657 | Msa1388090:CDS | 50.0% |
| ! | TCAGCATCGGGCTTCAAGTA+AGG | + | tig0021032:98878-98897 | None:intergenic | 50.0% |
| ! | TGTAAGCGTTTCAGGTGGCG+GGG | + | tig0021032:97852-97871 | None:intergenic | 55.0% |
| ! | CTGTAAGCGTTTCAGGTGGC+GGG | + | tig0021032:97853-97872 | None:intergenic | 55.0% |
| ! | GCTGTAAGCGTTTCAGGTGG+CGG | + | tig0021032:97854-97873 | None:intergenic | 55.0% |
| GACGCTGTAAGCGTTTCAGG+TGG | + | tig0021032:97857-97876 | None:intergenic | 55.0% | |
| GCGTCTTCTTTCCAAGACGG+CGG | - | tig0021032:97872-97891 | Msa1388090:CDS | 55.0% | |
| TGGAGAATACTCCGCCGTCT+TGG | + | tig0021032:97886-97905 | None:intergenic | 55.0% | |
| TCATGGCAGCAACGACTGGA+AGG | - | tig0021032:97938-97957 | Msa1388090:CDS | 55.0% | |
| CATGGCAGCAACGACTGGAA+GGG | - | tig0021032:97939-97958 | Msa1388090:CDS | 55.0% | |
| ATGGCAGCAACGACTGGAAG+GGG | - | tig0021032:97940-97959 | Msa1388090:CDS | 55.0% | |
| ATCTAACAACCTCTCGCCGG+AGG | + | tig0021032:97989-98008 | None:intergenic | 55.0% | |
| GATGAGGTGGCACCAGATCT+TGG | - | tig0021032:98170-98189 | Msa1388090:CDS | 55.0% | |
| AGGTGGCACCAGATCTTGGT+TGG | - | tig0021032:98174-98193 | Msa1388090:CDS | 55.0% | |
| ! | GATGACCCAGCGTTCTAGCT+GGG | - | tig0021032:98196-98215 | Msa1388090:CDS | 55.0% |
| TCCAACCCAGCTAGAACGCT+GGG | + | tig0021032:98204-98223 | None:intergenic | 55.0% | |
| ATCCAACCCAGCTAGAACGC+TGG | + | tig0021032:98205-98224 | None:intergenic | 55.0% | |
| AGTCTGAGTCTGAGCGTCCT+CGG | + | tig0021032:98357-98376 | None:intergenic | 55.0% | |
| CAGACTCAGACTCAGGCACA+AGG | - | tig0021032:98365-98384 | Msa1388090:CDS | 55.0% | |
| GCCGAGGAAATTAGCACGTG+CGG | - | tig0021032:98572-98591 | Msa1388090:CDS | 55.0% | |
| CCCGCACGTGCTAATTTCCT+CGG | + | tig0021032:98576-98595 | None:intergenic | 55.0% | |
| CCGAGGAAATTAGCACGTGC+GGG | - | tig0021032:98573-98592 | Msa1388090:CDS | 55.0% | |
| ! | TCATTTGGCGGACCTCGTGT+TGG | - | tig0021032:98623-98642 | Msa1388090:CDS | 55.0% |
| !! | GACGTGATTACAAGGGTGCC+AGG | - | tig0021032:98713-98732 | Msa1388090:CDS | 55.0% |
| ! | TGTAAGCGTTTCAGGTGGCG+GGG | + | tig0021032:97852-97871 | None:intergenic | 55.0% |
| ! | CTGTAAGCGTTTCAGGTGGC+GGG | + | tig0021032:97853-97872 | None:intergenic | 55.0% |
| ! | GCTGTAAGCGTTTCAGGTGG+CGG | + | tig0021032:97854-97873 | None:intergenic | 55.0% |
| GACGCTGTAAGCGTTTCAGG+TGG | + | tig0021032:97857-97876 | None:intergenic | 55.0% | |
| GCGTCTTCTTTCCAAGACGG+CGG | - | tig0021032:97872-97891 | Msa1388090:CDS | 55.0% | |
| TGGAGAATACTCCGCCGTCT+TGG | + | tig0021032:97886-97905 | None:intergenic | 55.0% | |
| TCATGGCAGCAACGACTGGA+AGG | - | tig0021032:97938-97957 | Msa1388090:CDS | 55.0% | |
| CATGGCAGCAACGACTGGAA+GGG | - | tig0021032:97939-97958 | Msa1388090:CDS | 55.0% | |
| ATGGCAGCAACGACTGGAAG+GGG | - | tig0021032:97940-97959 | Msa1388090:CDS | 55.0% | |
| ATCTAACAACCTCTCGCCGG+AGG | + | tig0021032:97989-98008 | None:intergenic | 55.0% | |
| GATGAGGTGGCACCAGATCT+TGG | - | tig0021032:98170-98189 | Msa1388090:CDS | 55.0% | |
| AGGTGGCACCAGATCTTGGT+TGG | - | tig0021032:98174-98193 | Msa1388090:CDS | 55.0% | |
| ! | GATGACCCAGCGTTCTAGCT+GGG | - | tig0021032:98196-98215 | Msa1388090:CDS | 55.0% |
| TCCAACCCAGCTAGAACGCT+GGG | + | tig0021032:98204-98223 | None:intergenic | 55.0% | |
| ATCCAACCCAGCTAGAACGC+TGG | + | tig0021032:98205-98224 | None:intergenic | 55.0% | |
| AGTCTGAGTCTGAGCGTCCT+CGG | + | tig0021032:98357-98376 | None:intergenic | 55.0% | |
| CAGACTCAGACTCAGGCACA+AGG | - | tig0021032:98365-98384 | Msa1388090:CDS | 55.0% | |
| GCCGAGGAAATTAGCACGTG+CGG | - | tig0021032:98572-98591 | Msa1388090:CDS | 55.0% | |
| CCCGCACGTGCTAATTTCCT+CGG | + | tig0021032:98576-98595 | None:intergenic | 55.0% | |
| CCGAGGAAATTAGCACGTGC+GGG | - | tig0021032:98573-98592 | Msa1388090:CDS | 55.0% | |
| ! | TCATTTGGCGGACCTCGTGT+TGG | - | tig0021032:98623-98642 | Msa1388090:CDS | 55.0% |
| !! | GACGTGATTACAAGGGTGCC+AGG | - | tig0021032:98713-98732 | Msa1388090:CDS | 55.0% |
| !! | TAAGCGTTTCAGGTGGCGGG+GGG | + | tig0021032:97850-97869 | None:intergenic | 60.0% |
| ! | GTAAGCGTTTCAGGTGGCGG+GGG | + | tig0021032:97851-97870 | None:intergenic | 60.0% |
| CGCCGGAGGTTGTCATCCAA+GGG | + | tig0021032:97975-97994 | None:intergenic | 60.0% | |
| TCGCCGGAGGTTGTCATCCA+AGG | + | tig0021032:97976-97995 | None:intergenic | 60.0% | |
| GGATGACCCAGCGTTCTAGC+TGG | - | tig0021032:98195-98214 | Msa1388090:CDS | 60.0% | |
| ! | ACCCAGCGTTCTAGCTGGGT+TGG | - | tig0021032:98200-98219 | Msa1388090:CDS | 60.0% |
| GTCTGAGTCTGAGCGTCCTC+GGG | + | tig0021032:98356-98375 | None:intergenic | 60.0% | |
| GGACGCTCAGACTCAGACTC+AGG | - | tig0021032:98358-98377 | Msa1388090:CDS | 60.0% | |
| ACCGTTACCGGCCATAGCCT+TGG | - | tig0021032:98527-98546 | Msa1388090:CDS | 60.0% | |
| GCCAAGGCTATGGCCGGTAA+CGG | + | tig0021032:98531-98550 | None:intergenic | 60.0% | |
| CTAGTGTCGCGCCAAGGCTA+TGG | + | tig0021032:98541-98560 | None:intergenic | 60.0% | |
| ! | ATAGGGCTAGTGTCGCGCCA+AGG | + | tig0021032:98547-98566 | None:intergenic | 60.0% |
| TGGCGCGACACTAGCCCTAT+TGG | - | tig0021032:98547-98566 | Msa1388090:CDS | 60.0% | |
| CGCGACACTAGCCCTATTGG+TGG | - | tig0021032:98550-98569 | Msa1388090:CDS | 60.0% | |
| ! | ACTAGCCCTATTGGTGGCCG+AGG | - | tig0021032:98556-98575 | Msa1388090:CDS | 60.0% |
| !! | TAAGCGTTTCAGGTGGCGGG+GGG | + | tig0021032:97850-97869 | None:intergenic | 60.0% |
| ! | GTAAGCGTTTCAGGTGGCGG+GGG | + | tig0021032:97851-97870 | None:intergenic | 60.0% |
| CGCCGGAGGTTGTCATCCAA+GGG | + | tig0021032:97975-97994 | None:intergenic | 60.0% | |
| TCGCCGGAGGTTGTCATCCA+AGG | + | tig0021032:97976-97995 | None:intergenic | 60.0% | |
| GGATGACCCAGCGTTCTAGC+TGG | - | tig0021032:98195-98214 | Msa1388090:CDS | 60.0% | |
| ! | ACCCAGCGTTCTAGCTGGGT+TGG | - | tig0021032:98200-98219 | Msa1388090:CDS | 60.0% |
| GTCTGAGTCTGAGCGTCCTC+GGG | + | tig0021032:98356-98375 | None:intergenic | 60.0% | |
| GGACGCTCAGACTCAGACTC+AGG | - | tig0021032:98358-98377 | Msa1388090:CDS | 60.0% | |
| ACCGTTACCGGCCATAGCCT+TGG | - | tig0021032:98527-98546 | Msa1388090:CDS | 60.0% | |
| GCCAAGGCTATGGCCGGTAA+CGG | + | tig0021032:98531-98550 | None:intergenic | 60.0% | |
| CTAGTGTCGCGCCAAGGCTA+TGG | + | tig0021032:98541-98560 | None:intergenic | 60.0% | |
| ! | ATAGGGCTAGTGTCGCGCCA+AGG | + | tig0021032:98547-98566 | None:intergenic | 60.0% |
| TGGCGCGACACTAGCCCTAT+TGG | - | tig0021032:98547-98566 | Msa1388090:CDS | 60.0% | |
| CGCGACACTAGCCCTATTGG+TGG | - | tig0021032:98550-98569 | Msa1388090:CDS | 60.0% | |
| ! | ACTAGCCCTATTGGTGGCCG+AGG | - | tig0021032:98556-98575 | Msa1388090:CDS | 60.0% |
| GGATGACAACCTCCGGCGAG+AGG | - | tig0021032:97977-97996 | Msa1388090:CDS | 65.0% | |
| TGTCGCGCCAAGGCTATGGC+CGG | + | tig0021032:98537-98556 | None:intergenic | 65.0% | |
| ACAGCCACGGGTGGCACGTT+TGG | + | tig0021032:98599-98618 | None:intergenic | 65.0% | |
| GGATGACAACCTCCGGCGAG+AGG | - | tig0021032:97977-97996 | Msa1388090:CDS | 65.0% | |
| TGTCGCGCCAAGGCTATGGC+CGG | + | tig0021032:98537-98556 | None:intergenic | 65.0% | |
| ACAGCCACGGGTGGCACGTT+TGG | + | tig0021032:98599-98618 | None:intergenic | 65.0% | |
| CGGGCCAAACGTGCCACCCG+TGG | - | tig0021032:98592-98611 | Msa1388090:CDS | 75.0% | |
| CGGGCCAAACGTGCCACCCG+TGG | - | tig0021032:98592-98611 | Msa1388090:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021032 | gene | 97519 | 99159 | 97519 | ID=Msa1388090;Name=Msa1388090 |
| tig0021032 | mRNA | 97519 | 99159 | 97519 | ID=Msa1388090-mRNA-1;Parent=Msa1388090;Name=Msa1388090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|546 |
| tig0021032 | exon | 97519 | 99159 | 97519 | ID=Msa1388090-mRNA-1:exon:10942;Parent=Msa1388090-mRNA-1 |
| tig0021032 | CDS | 97519 | 99159 | 97519 | ID=Msa1388090-mRNA-1:cds;Parent=Msa1388090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
