Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796630 | XP_003611369.1 | 97.273 | 550 | 11 | 3 | 1 | 548 | 1 | 548 | 0.0 | 1105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796630 | sp|O23522|PLA14_ARATH | 54.972 | 533 | 198 | 10 | 25 | 548 | 18 | 517 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796630 | G7JXH0 | 97.273 | 550 | 11 | 3 | 1 | 548 | 1 | 548 | 0.0 | 1105 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051050 | Msa0796630 | 0.837762 | 4.293130e-57 | -8.615850e-47 |
| Msa0060070 | Msa0796630 | 0.808736 | 2.674477e-50 | -8.615850e-47 |
| Msa0076170 | Msa0796630 | 0.800221 | 1.595408e-48 | -8.615850e-47 |
| Msa0101240 | Msa0796630 | 0.840857 | 6.753023e-58 | -8.615850e-47 |
| Msa0615290 | Msa0796630 | 0.807165 | 5.776215e-50 | -8.615850e-47 |
| Msa0664540 | Msa0796630 | 0.824487 | 7.859569e-54 | -8.615850e-47 |
| Msa0696850 | Msa0796630 | 0.802612 | 5.166297e-49 | -8.615850e-47 |
| Msa0743870 | Msa0796630 | 0.802451 | 5.575672e-49 | -8.615850e-47 |
| Msa0754770 | Msa0796630 | 0.988670 | 6.148089e-175 | -8.615850e-47 |
| Msa0754810 | Msa0796630 | 0.854266 | 1.380394e-61 | -8.615850e-47 |
| Msa0758250 | Msa0796630 | 0.826163 | 3.153380e-54 | -8.615850e-47 |
| Msa0796630 | Msa0833890 | 0.967030 | 1.017329e-126 | -8.615850e-47 |
| Msa0796630 | Msa0834180 | 0.972083 | 3.435988e-134 | -8.615850e-47 |
| Msa0796630 | Msa0837870 | 0.826949 | 2.048160e-54 | -8.615850e-47 |
| Msa0796630 | Msa0865970 | 0.833078 | 6.556706e-56 | -8.615850e-47 |
| Msa0796630 | Msa0866070 | 0.835844 | 1.324696e-56 | -8.615850e-47 |
| Msa0796630 | Msa0899970 | 0.808430 | 3.109380e-50 | -8.615850e-47 |
| Msa0796630 | Msa1029870 | 0.819888 | 9.165313e-53 | -8.615850e-47 |
| Msa0796630 | Msa1040980 | 0.811445 | 6.976535e-51 | -8.615850e-47 |
| Msa0796630 | Msa1043120 | 0.811539 | 6.656938e-51 | -8.615850e-47 |
| Msa0796630 | Msa1259860 | 0.803035 | 4.224085e-49 | -8.615850e-47 |
| Msa0796630 | Msa1266490 | 0.806348 | 8.591427e-50 | -8.615850e-47 |
| Msa0796630 | Msa1337310 | 0.813477 | 2.509152e-51 | -8.615850e-47 |
| Msa0796630 | Msa1360420 | 0.856450 | 3.191983e-62 | -8.615850e-47 |
| Msa0796630 | Msa1366550 | 0.815166 | 1.062621e-51 | -8.615850e-47 |
| Msa0796630 | Msa1388090 | 0.974087 | 1.531056e-137 | -8.615850e-47 |
| Msa0796630 | Msa1399260 | 0.812141 | 4.922934e-51 | -8.615850e-47 |
| Msa0796630 | Msa1409490 | 0.801792 | 7.618027e-49 | -8.615850e-47 |
| Msa0796630 | Msa1424630 | 0.824734 | 6.874774e-54 | -8.615850e-47 |
| Msa0796630 | Msa1430550 | 0.806414 | 8.322605e-50 | -8.615850e-47 |
| Msa0796630 | Msa1463030 | 0.823143 | 1.622997e-53 | -8.615850e-47 |
| Msa0124200 | Msa0796630 | 0.800535 | 1.377237e-48 | -8.615850e-47 |
| Msa0124320 | Msa0796630 | 0.807545 | 4.797384e-50 | -8.615850e-47 |
| Msa0168570 | Msa0796630 | 0.807302 | 5.402059e-50 | -8.615850e-47 |
| Msa0187830 | Msa0796630 | 0.805620 | 1.222279e-49 | -8.615850e-47 |
| Msa0194890 | Msa0796630 | 0.803663 | 3.130492e-49 | -8.615850e-47 |
| Msa0211200 | Msa0796630 | 0.804187 | 2.437012e-49 | -8.615850e-47 |
| Msa0408340 | Msa0796630 | 0.806041 | 9.973513e-50 | -8.615850e-47 |
| Msa0254260 | Msa0796630 | 0.802688 | 4.981152e-49 | -8.615850e-47 |
| Msa0559510 | Msa0796630 | 0.807217 | 5.629106e-50 | -8.615850e-47 |
| Msa0568800 | Msa0796630 | 0.805778 | 1.132384e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796630 | MtrunA17_Chr5g0399641 | 97.273 | 550 | 11 | 3 | 1 | 548 | 1 | 548 | 0.0 | 1105 |
| Msa0796630 | MtrunA17_Chr4g0055691 | 65.530 | 557 | 137 | 9 | 6 | 546 | 4 | 521 | 0.0 | 717 |
| Msa0796630 | MtrunA17_Chr7g0250561 | 47.423 | 388 | 178 | 8 | 129 | 494 | 65 | 448 | 3.79e-120 | 361 |
| Msa0796630 | MtrunA17_Chr7g0250611 | 45.283 | 371 | 170 | 8 | 133 | 494 | 75 | 421 | 5.41e-109 | 332 |
| Msa0796630 | MtrunA17_Chr4g0039301 | 38.342 | 386 | 200 | 8 | 128 | 495 | 95 | 460 | 5.51e-84 | 271 |
| Msa0796630 | MtrunA17_Chr7g0260671 | 39.267 | 382 | 195 | 11 | 133 | 495 | 74 | 437 | 2.19e-80 | 260 |
| Msa0796630 | MtrunA17_Chr7g0260681 | 39.178 | 365 | 185 | 12 | 133 | 478 | 74 | 420 | 4.23e-76 | 246 |
| Msa0796630 | MtrunA17_Chr2g0283561 | 34.974 | 386 | 192 | 9 | 133 | 495 | 39 | 388 | 2.31e-63 | 213 |
| Msa0796630 | MtrunA17_Chr7g0214711 | 32.524 | 412 | 215 | 13 | 109 | 502 | 80 | 446 | 4.69e-57 | 199 |
| Msa0796630 | MtrunA17_Chr4g0046001 | 32.905 | 389 | 195 | 11 | 133 | 497 | 13 | 359 | 9.73e-52 | 182 |
| Msa0796630 | MtrunA17_Chr4g0046011 | 33.162 | 389 | 194 | 12 | 133 | 497 | 4 | 350 | 5.06e-51 | 180 |
| Msa0796630 | MtrunA17_Chr4g0041311 | 29.250 | 400 | 219 | 10 | 129 | 495 | 24 | 392 | 4.12e-49 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796630 | AT4G16820.1 | 54.972 | 533 | 198 | 10 | 25 | 548 | 18 | 517 | 0.0 | 559 |
| Msa0796630 | AT2G44810.2 | 50.269 | 372 | 167 | 9 | 133 | 496 | 86 | 447 | 5.66e-122 | 366 |
| Msa0796630 | AT2G44810.1 | 50.546 | 366 | 163 | 9 | 139 | 496 | 2 | 357 | 2.86e-119 | 356 |
| Msa0796630 | AT1G30370.1 | 37.831 | 415 | 219 | 10 | 124 | 519 | 105 | 499 | 4.47e-86 | 276 |
| Msa0796630 | AT1G51440.1 | 41.287 | 373 | 169 | 11 | 137 | 483 | 91 | 439 | 5.81e-83 | 268 |
| Msa0796630 | AT2G30550.1 | 39.011 | 364 | 186 | 7 | 137 | 481 | 105 | 451 | 9.19e-79 | 255 |
| Msa0796630 | AT1G06800.1 | 39.426 | 383 | 187 | 10 | 137 | 495 | 89 | 450 | 1.63e-78 | 256 |
| Msa0796630 | AT1G06800.2 | 40.164 | 366 | 174 | 10 | 137 | 478 | 89 | 433 | 2.85e-78 | 253 |
| Msa0796630 | AT2G30550.2 | 38.624 | 378 | 196 | 8 | 137 | 495 | 105 | 465 | 5.75e-78 | 255 |
| Msa0796630 | AT2G31690.1 | 35.616 | 365 | 184 | 11 | 133 | 477 | 88 | 421 | 9.20e-65 | 219 |
| Msa0796630 | AT1G05800.1 | 35.635 | 362 | 185 | 9 | 133 | 477 | 80 | 410 | 1.50e-63 | 215 |
| Msa0796630 | AT4G18550.1 | 32.614 | 417 | 211 | 11 | 133 | 517 | 19 | 397 | 6.63e-59 | 202 |
| Msa0796630 | AT4G18550.2 | 32.614 | 417 | 211 | 11 | 133 | 517 | 36 | 414 | 9.23e-59 | 202 |
| Msa0796630 | AT1G06250.1 | 31.959 | 388 | 202 | 9 | 133 | 495 | 5 | 355 | 2.74e-55 | 192 |
| Msa0796630 | AT2G42690.1 | 32.468 | 385 | 206 | 8 | 137 | 495 | 8 | 364 | 7.46e-52 | 182 |
| Msa0796630 | AT4G18550.3 | 36.207 | 290 | 152 | 8 | 133 | 399 | 36 | 315 | 1.69e-45 | 163 |
| Msa0796630 | AT1G06250.2 | 30.797 | 276 | 142 | 6 | 234 | 495 | 1 | 241 | 2.85e-33 | 129 |
Find 134 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAATTGGATTACCTAAA+TGG | 0.127660 | 5_3:-8659513 | Msa0796630:CDS |
| CCTCGGGTAAATCGACTAAT+TGG | 0.206931 | 5_3:+8659320 | None:intergenic |
| GAAGACGCTGTAAGCGTTTC+AGG | 0.238955 | 5_3:+8659800 | None:intergenic |
| TAACCTAGATGAGTTGTTAT+TGG | 0.251262 | 5_3:+8660011 | None:intergenic |
| CTCTTAGCATTAGCTCTAAA+TGG | 0.258178 | 5_3:+8658686 | None:intergenic |
| CGCCTTTGTAAAGTTCAATA+AGG | 0.276950 | 5_3:+8659161 | None:intergenic |
| AAAAGATGAAGGTTGTTTAA+TGG | 0.278707 | 5_3:+8660047 | None:intergenic |
| TTTCTCCCGATGATATTTCT+TGG | 0.282496 | 5_3:+8659754 | None:intergenic |
| AGAGGCTTATTTACATTTAG+TGG | 0.289753 | 5_3:-8658732 | Msa0796630:CDS |
| ATGATGATTCCAAAGGCTTT+TGG | 0.306541 | 5_3:+8659956 | None:intergenic |
| GCCACCTCATCAACCCATTT+AGG | 0.326253 | 5_3:+8659499 | None:intergenic |
| GTTGTATTGGTTGTTGAAAC+TGG | 0.332759 | 5_3:+8659926 | None:intergenic |
| ACTCAACTTTGGGCTTTGAT+TGG | 0.339758 | 5_3:+8659263 | None:intergenic |
| ACAGCCACGGGTGGCACGTT+TGG | 0.344135 | 5_3:+8659055 | None:intergenic |
| TAATTTCCTCGGCCACCAAT+AGG | 0.366166 | 5_3:+8659089 | None:intergenic |
| CGGCGAGAGGTTGTTAGATA+TGG | 0.368122 | 5_3:-8659667 | Msa0796630:CDS |
| CATAAATCCACACTCAACTT+TGG | 0.371336 | 5_3:+8659252 | None:intergenic |
| CTGTAAGCGTTTCAGGTGGC+GGG | 0.378709 | 5_3:+8659807 | None:intergenic |
| TCTTCAGCTGCTTTAATCTC+TGG | 0.381476 | 5_3:+8659838 | None:intergenic |
| AACTTCCACTTGTCTTGAAT+GGG | 0.386150 | 5_3:-8659359 | Msa0796630:CDS |
| GTTGGAAGAGAACACTCCTT+TGG | 0.394244 | 5_3:-8658846 | Msa0796630:CDS |
| CGTGTTGGTAACAGAGCCTT+TGG | 0.394565 | 5_3:-8659013 | Msa0796630:CDS |
| TAAAAGAGAGATTGCAAGAA+TGG | 0.395214 | 5_3:-8659413 | Msa0796630:CDS |
| ATAAATCCACACTCAACTTT+GGG | 0.396883 | 5_3:+8659253 | None:intergenic |
| TCTTGATAGCCAAAAGCCTT+TGG | 0.405866 | 5_3:-8659965 | Msa0796630:CDS |
| GGATGACCCAGCGTTCTAGC+TGG | 0.407435 | 5_3:-8659462 | Msa0796630:CDS |
| ATCAATTGGATTACCTAAAT+GGG | 0.408997 | 5_3:-8659512 | Msa0796630:CDS |
| GGTTGTTAGATATGGTGATT+TGG | 0.409569 | 5_3:-8659659 | Msa0796630:CDS |
| GAACTTCCACTTGTCTTGAA+TGG | 0.412888 | 5_3:-8659360 | Msa0796630:CDS |
| GACTTAACCTAGCAAAACTA+TGG | 0.417487 | 5_3:-8659861 | Msa0796630:CDS |
| CTGTATGCCACATCATCAAT+TGG | 0.418121 | 5_3:-8659526 | Msa0796630:CDS |
| AATTTCCTCGGCCACCAATA+GGG | 0.421437 | 5_3:+8659090 | None:intergenic |
| ATGAGCTTGTACAAGACAAA+AGG | 0.423174 | 5_3:-8659232 | Msa0796630:CDS |
| TTGGAAGAGAACACTCCTTT+GGG | 0.425192 | 5_3:-8658845 | Msa0796630:CDS |
| GAATTAAGCATAACCGTTAC+CGG | 0.425326 | 5_3:-8659136 | Msa0796630:CDS |
| AAGAATTCCAAGGTTGTTAG+TGG | 0.426321 | 5_3:-8658881 | Msa0796630:CDS |
| ACATTTAGTGGATGGATACA+TGG | 0.441165 | 5_3:-8658720 | Msa0796630:CDS |
| AAACCAATAACAACTCATCT+AGG | 0.443716 | 5_3:-8660014 | Msa0796630:CDS |
| AATATCATGGCAGCAACGAC+TGG | 0.446528 | 5_3:-8659723 | Msa0796630:CDS |
| GATGAGGTGGCACCAGATCT+TGG | 0.447657 | 5_3:-8659487 | Msa0796630:CDS |
| CCCGCACGTGCTAATTTCCT+CGG | 0.448005 | 5_3:+8659078 | None:intergenic |
| TAGACAGGGATCCATGTCTA+TGG | 0.450095 | 5_3:-8658546 | Msa0796630:CDS |
| GTTGTTTAATGGAAGAAGAA+TGG | 0.450283 | 5_3:+8660058 | None:intergenic |
| CACTTCTTCAACAACGGACT+CGG | 0.454486 | 5_3:+8659189 | None:intergenic |
| GTGAAGGTTGTGAGCAGGTA+AGG | 0.457213 | 5_3:+8660116 | None:intergenic |
| GTAAGCGTTTCAGGTGGCGG+GGG | 0.458362 | 5_3:+8659809 | None:intergenic |
| CTTGTCTAATCTTAGTAGAC+AGG | 0.459042 | 5_3:-8658561 | Msa0796630:CDS |
| CTAGTGTCGCGCCAAGGCTA+TGG | 0.467757 | 5_3:+8659113 | None:intergenic |
| GCTGTAAGCGTTTCAGGTGG+CGG | 0.475077 | 5_3:+8659806 | None:intergenic |
| GTCTGAGTCTGAGCGTCCTC+GGG | 0.477426 | 5_3:+8659304 | None:intergenic |
| TCGCCGGAGGTTGTCATCCA+AGG | 0.480124 | 5_3:+8659684 | None:intergenic |
| GAAGGGGATGTTAGATCCCT+TGG | 0.480349 | 5_3:-8659701 | Msa0796630:CDS |
| TGGGTCATCCAACCAAGATC+TGG | 0.480411 | 5_3:+8659475 | None:intergenic |
| TGAAGAGAAGCAAAAGATGA+AGG | 0.480894 | 5_3:+8660036 | None:intergenic |
| GCTTCAGTTGTTGACATGGC+AGG | 0.485069 | 5_3:+8659604 | None:intergenic |
| AGTCTGAGTCTGAGCGTCCT+CGG | 0.485837 | 5_3:+8659303 | None:intergenic |
| TGGAGAATACTCCGCCGTCT+TGG | 0.486287 | 5_3:+8659774 | None:intergenic |
| TATTGGTTGTTGAAACTGGT+TGG | 0.487668 | 5_3:+8659930 | None:intergenic |
| AAAAGAGAGATTGCAAGAAT+GGG | 0.490721 | 5_3:-8659412 | Msa0796630:CDS |
| ACACACAAGACGTGATTACA+AGG | 0.492272 | 5_3:-8658946 | Msa0796630:CDS |
| CTCGGGTAAATCGACTAATT+GGG | 0.499666 | 5_3:+8659321 | None:intergenic |
| AACAACTCCACTAACAACCT+TGG | 0.499945 | 5_3:+8658874 | None:intergenic |
| ACAAGGACACCTCTTGATGA+TGG | 0.502751 | 5_3:+8659578 | None:intergenic |
| TGAGCTTGTACAAGACAAAA+GGG | 0.503559 | 5_3:-8659231 | Msa0796630:CDS |
| CCTTTGGGATATTCACATGT+TGG | 0.504000 | 5_3:-8658830 | Msa0796630:CDS |
| GAAATATCATCGGGAGAAAG+TGG | 0.505201 | 5_3:-8659750 | Msa0796630:CDS |
| CTTCAACAACGGACTCGGAT+AGG | 0.508893 | 5_3:+8659194 | None:intergenic |
| TCAGCATCGGGCTTCAAGTA+AGG | 0.510052 | 5_3:+8658776 | None:intergenic |
| CAACAAGCTATGTCAGCATC+GGG | 0.515189 | 5_3:+8658764 | None:intergenic |
| GCTTATTTACATTTAGTGGA+TGG | 0.516513 | 5_3:-8658728 | Msa0796630:CDS |
| GATGACCCAGCGTTCTAGCT+GGG | 0.518537 | 5_3:-8659461 | Msa0796630:CDS |
| GAAGAATGGCATCTGAAACT+AGG | 0.523536 | 5_3:+8660072 | None:intergenic |
| CAAGGACACCTCTTGATGAT+GGG | 0.525696 | 5_3:+8659579 | None:intergenic |
| TCATCAAGAGGTGTCCTTGT+CGG | 0.525857 | 5_3:-8659575 | Msa0796630:CDS |
| TTGTATACTAGTAAGGCTAA+AGG | 0.526986 | 5_3:-8658617 | Msa0796630:CDS |
| ATCCCTTGGATGACAACCTC+CGG | 0.528647 | 5_3:-8659687 | Msa0796630:CDS |
| ATCCAACCCAGCTAGAACGC+TGG | 0.529696 | 5_3:+8659455 | None:intergenic |
| GACGTGATTACAAGGGTGCC+AGG | 0.535150 | 5_3:-8658938 | Msa0796630:CDS |
| CGCGACACTAGCCCTATTGG+TGG | 0.536052 | 5_3:-8659101 | Msa0796630:CDS |
| TAGTGGAGTTGTTGATATGT+TGG | 0.537325 | 5_3:-8658864 | Msa0796630:CDS |
| TGTAAGCGTTTCAGGTGGCG+GGG | 0.538613 | 5_3:+8659808 | None:intergenic |
| ACCGTTACCGGCCATAGCCT+TGG | 0.539736 | 5_3:-8659124 | Msa0796630:CDS |
| ATGGCAGCAACGACTGGAAG+GGG | 0.541567 | 5_3:-8659717 | Msa0796630:CDS |
| TCAGACTCAGACTCAGACTC+AGG | 0.547611 | 5_3:-8659293 | Msa0796630:CDS |
| ACCTAAATGGGTTGATGAGG+TGG | 0.548455 | 5_3:-8659500 | Msa0796630:CDS |
| ACTAGCCCTATTGGTGGCCG+AGG | 0.548502 | 5_3:-8659095 | Msa0796630:CDS |
| ATTCATGAAGATGATGGACT+AGG | 0.548753 | 5_3:+8658512 | None:intergenic |
| AGGTAATCCAATTGATGATG+TGG | 0.548802 | 5_3:+8659519 | None:intergenic |
| GATATTGTGATATCTCTTCG+TGG | 0.549518 | 5_3:-8659382 | Msa0796630:CDS |
| TTCAGCCCATTCAAGACAAG+TGG | 0.553127 | 5_3:+8659354 | None:intergenic |
| CGCCGGAGGTTGTCATCCAA+GGG | 0.557417 | 5_3:+8659685 | None:intergenic |
| ACAACAAGCTATGTCAGCAT+CGG | 0.563181 | 5_3:+8658763 | None:intergenic |
| TCATGGCAGCAACGACTGGA+AGG | 0.564182 | 5_3:-8659719 | Msa0796630:CDS |
| CGCCTTATTGAACTTTACAA+AGG | 0.564214 | 5_3:-8659163 | Msa0796630:CDS |
| ATTCTCCAAGAAATATCATC+GGG | 0.566867 | 5_3:-8659759 | Msa0796630:CDS |
| AGCTTGTTGTCATGATCTAG+AGG | 0.571065 | 5_3:-8658750 | Msa0796630:CDS |
| TGATGTGGCATACAGACTCT+TGG | 0.573169 | 5_3:+8659534 | None:intergenic |
| TAAGCGTTTCAGGTGGCGGG+GGG | 0.576225 | 5_3:+8659810 | None:intergenic |
| GGGTGCTTCAGTTGTTGACA+TGG | 0.576279 | 5_3:+8659600 | None:intergenic |
| CCGAGGAAATTAGCACGTGC+GGG | 0.576932 | 5_3:-8659078 | Msa0796630:CDS |
| TCATTTGGCGGACCTCGTGT+TGG | 0.577348 | 5_3:-8659028 | Msa0796630:CDS |
| CATATCTAACAACCTCTCGC+CGG | 0.581786 | 5_3:+8659668 | None:intergenic |
| CATGGCAGCAACGACTGGAA+GGG | 0.583943 | 5_3:-8659718 | Msa0796630:CDS |
| AATTTGTGAAGGTTGTGAGC+AGG | 0.587076 | 5_3:+8660111 | None:intergenic |
| GCCAAGGCTATGGCCGGTAA+CGG | 0.591069 | 5_3:+8659123 | None:intergenic |
| TATTCTCCAAGAAATATCAT+CGG | 0.595846 | 5_3:-8659760 | Msa0796630:CDS |
| AGAAAGTGGAGGGAATATCA+TGG | 0.601338 | 5_3:-8659736 | Msa0796630:CDS |
| TTGGTTGATGATGATTCCAA+AGG | 0.613659 | 5_3:+8659949 | None:intergenic |
| AGGTGGCACCAGATCTTGGT+TGG | 0.618491 | 5_3:-8659483 | Msa0796630:CDS |
| GGATGACAACCTCCGGCGAG+AGG | 0.618831 | 5_3:-8659680 | Msa0796630:CDS |
| CAGACTCAGACTCAGGCACA+AGG | 0.619166 | 5_3:-8659286 | Msa0796630:CDS |
| TTAGTGCTTGAAATTTGTGA+AGG | 0.626013 | 5_3:+8660100 | None:intergenic |
| TCAAAGCCCAAAGTTGAGTG+TGG | 0.627127 | 5_3:-8659259 | Msa0796630:CDS |
| ACAACAAGCAGCCATAGACA+TGG | 0.628855 | 5_3:+8658535 | None:intergenic |
| GCGTCGCACTTCTTCAACAA+CGG | 0.630718 | 5_3:+8659183 | None:intergenic |
| TTGTCTAATCTTAGTAGACA+GGG | 0.632883 | 5_3:-8658560 | Msa0796630:CDS |
| ATCTAACAACCTCTCGCCGG+AGG | 0.634684 | 5_3:+8659671 | None:intergenic |
| TGAAGCACCCCATCATCAAG+AGG | 0.635362 | 5_3:-8659587 | Msa0796630:CDS |
| AAGGACACCTCTTGATGATG+GGG | 0.638913 | 5_3:+8659580 | None:intergenic |
| TGTCGCGCCAAGGCTATGGC+CGG | 0.642253 | 5_3:+8659117 | None:intergenic |
| ACAGCGTCTTCTTTCCAAGA+CGG | 0.643880 | 5_3:-8659788 | Msa0796630:CDS |
| TCTGTTAATCTTAATAGACA+AGG | 0.646433 | 5_3:-8658590 | Msa0796630:CDS |
| TATCATCGGGAGAAAGTGGA+GGG | 0.648802 | 5_3:-8659746 | Msa0796630:CDS |
| ATTACCTAAATGGGTTGATG+AGG | 0.663925 | 5_3:-8659503 | Msa0796630:CDS |
| ATATCATCGGGAGAAAGTGG+AGG | 0.666029 | 5_3:-8659747 | Msa0796630:CDS |
| ATAGGGCTAGTGTCGCGCCA+AGG | 0.667674 | 5_3:+8659107 | None:intergenic |
| CCAATTAGTCGATTTACCCG+AGG | 0.667868 | 5_3:-8659320 | Msa0796630:CDS |
| GACGCTGTAAGCGTTTCAGG+TGG | 0.674999 | 5_3:+8659803 | None:intergenic |
| TTTATAAGATCTCTCCGACA+AGG | 0.680022 | 5_3:+8659561 | None:intergenic |
| GCGTCTTCTTTCCAAGACGG+CGG | 0.680773 | 5_3:-8659785 | Msa0796630:CDS |
| CCAACATGTGAATATCCCAA+AGG | 0.681313 | 5_3:+8658830 | None:intergenic |
| GAGCTTGTACAAGACAAAAG+GGG | 0.708452 | 5_3:-8659230 | Msa0796630:CDS |
| CACACAAGACGTGATTACAA+GGG | 0.729372 | 5_3:-8658945 | Msa0796630:CDS |
| AAGGCTCTGTTACCAACACG+AGG | 0.743509 | 5_3:+8659016 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAATTAAGAATTCCA+AGG | - | chr5_3:8659761-8659780 | Msa0796630:CDS | 20.0% |
| !! | AAAAAAGTTGTATACTAGTA+AGG | - | chr5_3:8660028-8660047 | Msa0796630:CDS | 20.0% |
| !! | AGAAAAAATTAAGAATTCCA+AGG | - | chr5_3:8659761-8659780 | Msa0796630:CDS | 20.0% |
| !! | AAAAAAGTTGTATACTAGTA+AGG | - | chr5_3:8660028-8660047 | Msa0796630:CDS | 20.0% |
| ! | AAAAGATGAAGGTTGTTTAA+TGG | + | chr5_3:8658608-8658627 | None:intergenic | 25.0% |
| !!! | TTTTTGTCACTTTTTTGGAT+AGG | + | chr5_3:8658751-8658770 | None:intergenic | 25.0% |
| ! | ATCCAAAAAAGTGACAAAAA+AGG | - | chr5_3:8658751-8658770 | Msa0796630:CDS | 25.0% |
| !!! | TTCCTTTTTTGTCACTTTTT+TGG | + | chr5_3:8658756-8658775 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAACTTTCTTGA+AGG | - | chr5_3:8658769-8658788 | Msa0796630:CDS | 25.0% |
| ! | TATTCTCCAAGAAATATCAT+CGG | - | chr5_3:8658892-8658911 | Msa0796630:CDS | 25.0% |
| ! | ATCAATTGGATTACCTAAAT+GGG | - | chr5_3:8659140-8659159 | Msa0796630:CDS | 25.0% |
| ! | TCTGTTAATCTTAATAGACA+AGG | - | chr5_3:8660062-8660081 | Msa0796630:CDS | 25.0% |
| ! | AAAAGATGAAGGTTGTTTAA+TGG | + | chr5_3:8658608-8658627 | None:intergenic | 25.0% |
| !!! | TTTTTGTCACTTTTTTGGAT+AGG | + | chr5_3:8658751-8658770 | None:intergenic | 25.0% |
| ! | ATCCAAAAAAGTGACAAAAA+AGG | - | chr5_3:8658751-8658770 | Msa0796630:CDS | 25.0% |
| !!! | TTCCTTTTTTGTCACTTTTT+TGG | + | chr5_3:8658756-8658775 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAACTTTCTTGA+AGG | - | chr5_3:8658769-8658788 | Msa0796630:CDS | 25.0% |
| ! | TATTCTCCAAGAAATATCAT+CGG | - | chr5_3:8658892-8658911 | Msa0796630:CDS | 25.0% |
| ! | ATCAATTGGATTACCTAAAT+GGG | - | chr5_3:8659140-8659159 | Msa0796630:CDS | 25.0% |
| ! | TCTGTTAATCTTAATAGACA+AGG | - | chr5_3:8660062-8660081 | Msa0796630:CDS | 25.0% |
| TTAGTGCTTGAAATTTGTGA+AGG | + | chr5_3:8658555-8658574 | None:intergenic | 30.0% | |
| GTTGTTTAATGGAAGAAGAA+TGG | + | chr5_3:8658597-8658616 | None:intergenic | 30.0% | |
| AAACCAATAACAACTCATCT+AGG | - | chr5_3:8658638-8658657 | Msa0796630:CDS | 30.0% | |
| TAACCTAGATGAGTTGTTAT+TGG | + | chr5_3:8658644-8658663 | None:intergenic | 30.0% | |
| !!! | CTTTTTTGGATAGGTTGTAT+TGG | + | chr5_3:8658742-8658761 | None:intergenic | 30.0% |
| ATTCTCCAAGAAATATCATC+GGG | - | chr5_3:8658893-8658912 | Msa0796630:CDS | 30.0% | |
| CATCAATTGGATTACCTAAA+TGG | - | chr5_3:8659139-8659158 | Msa0796630:CDS | 30.0% | |
| TAAAAGAGAGATTGCAAGAA+TGG | - | chr5_3:8659239-8659258 | Msa0796630:CDS | 30.0% | |
| AAAAGAGAGATTGCAAGAAT+GGG | - | chr5_3:8659240-8659259 | Msa0796630:CDS | 30.0% | |
| ATAAATCCACACTCAACTTT+GGG | + | chr5_3:8659402-8659421 | None:intergenic | 30.0% | |
| AGAGGCTTATTTACATTTAG+TGG | - | chr5_3:8659920-8659939 | Msa0796630:CDS | 30.0% | |
| GCTTATTTACATTTAGTGGA+TGG | - | chr5_3:8659924-8659943 | Msa0796630:CDS | 30.0% | |
| TTGTATACTAGTAAGGCTAA+AGG | - | chr5_3:8660035-8660054 | Msa0796630:CDS | 30.0% | |
| TTGTCTAATCTTAGTAGACA+GGG | - | chr5_3:8660092-8660111 | Msa0796630:CDS | 30.0% | |
| TTAGTGCTTGAAATTTGTGA+AGG | + | chr5_3:8658555-8658574 | None:intergenic | 30.0% | |
| GTTGTTTAATGGAAGAAGAA+TGG | + | chr5_3:8658597-8658616 | None:intergenic | 30.0% | |
| AAACCAATAACAACTCATCT+AGG | - | chr5_3:8658638-8658657 | Msa0796630:CDS | 30.0% | |
| TAACCTAGATGAGTTGTTAT+TGG | + | chr5_3:8658644-8658663 | None:intergenic | 30.0% | |
| !!! | CTTTTTTGGATAGGTTGTAT+TGG | + | chr5_3:8658742-8658761 | None:intergenic | 30.0% |
| ATTCTCCAAGAAATATCATC+GGG | - | chr5_3:8658893-8658912 | Msa0796630:CDS | 30.0% | |
| CATCAATTGGATTACCTAAA+TGG | - | chr5_3:8659139-8659158 | Msa0796630:CDS | 30.0% | |
| TAAAAGAGAGATTGCAAGAA+TGG | - | chr5_3:8659239-8659258 | Msa0796630:CDS | 30.0% | |
| AAAAGAGAGATTGCAAGAAT+GGG | - | chr5_3:8659240-8659259 | Msa0796630:CDS | 30.0% | |
| ATAAATCCACACTCAACTTT+GGG | + | chr5_3:8659402-8659421 | None:intergenic | 30.0% | |
| AGAGGCTTATTTACATTTAG+TGG | - | chr5_3:8659920-8659939 | Msa0796630:CDS | 30.0% | |
| GCTTATTTACATTTAGTGGA+TGG | - | chr5_3:8659924-8659943 | Msa0796630:CDS | 30.0% | |
| TTGTATACTAGTAAGGCTAA+AGG | - | chr5_3:8660035-8660054 | Msa0796630:CDS | 30.0% | |
| TTGTCTAATCTTAGTAGACA+GGG | - | chr5_3:8660092-8660111 | Msa0796630:CDS | 30.0% | |
| TGAAGAGAAGCAAAAGATGA+AGG | + | chr5_3:8658619-8658638 | None:intergenic | 35.0% | |
| ! | ATGATGATTCCAAAGGCTTT+TGG | + | chr5_3:8658699-8658718 | None:intergenic | 35.0% |
| !! | TTGGTTGATGATGATTCCAA+AGG | + | chr5_3:8658706-8658725 | None:intergenic | 35.0% |
| ! | TATTGGTTGTTGAAACTGGT+TGG | + | chr5_3:8658725-8658744 | None:intergenic | 35.0% |
| !! | GTTGTATTGGTTGTTGAAAC+TGG | + | chr5_3:8658729-8658748 | None:intergenic | 35.0% |
| GACTTAACCTAGCAAAACTA+TGG | - | chr5_3:8658791-8658810 | Msa0796630:CDS | 35.0% | |
| TTTCTCCCGATGATATTTCT+TGG | + | chr5_3:8658901-8658920 | None:intergenic | 35.0% | |
| GGTTGTTAGATATGGTGATT+TGG | - | chr5_3:8658993-8659012 | Msa0796630:CDS | 35.0% | |
| TTTATAAGATCTCTCCGACA+AGG | + | chr5_3:8659094-8659113 | None:intergenic | 35.0% | |
| !! | AGGTAATCCAATTGATGATG+TGG | + | chr5_3:8659136-8659155 | None:intergenic | 35.0% |
| !! | ATTACCTAAATGGGTTGATG+AGG | - | chr5_3:8659149-8659168 | Msa0796630:CDS | 35.0% |
| GATATTGTGATATCTCTTCG+TGG | - | chr5_3:8659270-8659289 | Msa0796630:CDS | 35.0% | |
| AACTTCCACTTGTCTTGAAT+GGG | - | chr5_3:8659293-8659312 | Msa0796630:CDS | 35.0% | |
| CATAAATCCACACTCAACTT+TGG | + | chr5_3:8659403-8659422 | None:intergenic | 35.0% | |
| ATGAGCTTGTACAAGACAAA+AGG | - | chr5_3:8659420-8659439 | Msa0796630:CDS | 35.0% | |
| TGAGCTTGTACAAGACAAAA+GGG | - | chr5_3:8659421-8659440 | Msa0796630:CDS | 35.0% | |
| ! | CGCCTTATTGAACTTTACAA+AGG | - | chr5_3:8659489-8659508 | Msa0796630:CDS | 35.0% |
| CGCCTTTGTAAAGTTCAATA+AGG | + | chr5_3:8659494-8659513 | None:intergenic | 35.0% | |
| GAATTAAGCATAACCGTTAC+CGG | - | chr5_3:8659516-8659535 | Msa0796630:CDS | 35.0% | |
| !! | CTTTTCAAGATGTTCTCCAA+AGG | + | chr5_3:8659658-8659677 | None:intergenic | 35.0% |
| TCCTCGCTTAAAAATATTCC+TGG | + | chr5_3:8659735-8659754 | None:intergenic | 35.0% | |
| AAGAATTCCAAGGTTGTTAG+TGG | - | chr5_3:8659771-8659790 | Msa0796630:CDS | 35.0% | |
| TAGTGGAGTTGTTGATATGT+TGG | - | chr5_3:8659788-8659807 | Msa0796630:CDS | 35.0% | |
| ! | ACATTTAGTGGATGGATACA+TGG | - | chr5_3:8659932-8659951 | Msa0796630:CDS | 35.0% |
| !! | CTCTTAGCATTAGCTCTAAA+TGG | + | chr5_3:8659969-8659988 | None:intergenic | 35.0% |
| CTTGTCTAATCTTAGTAGAC+AGG | - | chr5_3:8660091-8660110 | Msa0796630:CDS | 35.0% | |
| TGAAGAGAAGCAAAAGATGA+AGG | + | chr5_3:8658619-8658638 | None:intergenic | 35.0% | |
| ! | ATGATGATTCCAAAGGCTTT+TGG | + | chr5_3:8658699-8658718 | None:intergenic | 35.0% |
| !! | TTGGTTGATGATGATTCCAA+AGG | + | chr5_3:8658706-8658725 | None:intergenic | 35.0% |
| ! | TATTGGTTGTTGAAACTGGT+TGG | + | chr5_3:8658725-8658744 | None:intergenic | 35.0% |
| !! | GTTGTATTGGTTGTTGAAAC+TGG | + | chr5_3:8658729-8658748 | None:intergenic | 35.0% |
| GACTTAACCTAGCAAAACTA+TGG | - | chr5_3:8658791-8658810 | Msa0796630:CDS | 35.0% | |
| TTTCTCCCGATGATATTTCT+TGG | + | chr5_3:8658901-8658920 | None:intergenic | 35.0% | |
| GGTTGTTAGATATGGTGATT+TGG | - | chr5_3:8658993-8659012 | Msa0796630:CDS | 35.0% | |
| TTTATAAGATCTCTCCGACA+AGG | + | chr5_3:8659094-8659113 | None:intergenic | 35.0% | |
| !! | AGGTAATCCAATTGATGATG+TGG | + | chr5_3:8659136-8659155 | None:intergenic | 35.0% |
| !! | ATTACCTAAATGGGTTGATG+AGG | - | chr5_3:8659149-8659168 | Msa0796630:CDS | 35.0% |
| GATATTGTGATATCTCTTCG+TGG | - | chr5_3:8659270-8659289 | Msa0796630:CDS | 35.0% | |
| AACTTCCACTTGTCTTGAAT+GGG | - | chr5_3:8659293-8659312 | Msa0796630:CDS | 35.0% | |
| CATAAATCCACACTCAACTT+TGG | + | chr5_3:8659403-8659422 | None:intergenic | 35.0% | |
| ATGAGCTTGTACAAGACAAA+AGG | - | chr5_3:8659420-8659439 | Msa0796630:CDS | 35.0% | |
| TGAGCTTGTACAAGACAAAA+GGG | - | chr5_3:8659421-8659440 | Msa0796630:CDS | 35.0% | |
| ! | CGCCTTATTGAACTTTACAA+AGG | - | chr5_3:8659489-8659508 | Msa0796630:CDS | 35.0% |
| CGCCTTTGTAAAGTTCAATA+AGG | + | chr5_3:8659494-8659513 | None:intergenic | 35.0% | |
| GAATTAAGCATAACCGTTAC+CGG | - | chr5_3:8659516-8659535 | Msa0796630:CDS | 35.0% | |
| !! | CTTTTCAAGATGTTCTCCAA+AGG | + | chr5_3:8659658-8659677 | None:intergenic | 35.0% |
| TCCTCGCTTAAAAATATTCC+TGG | + | chr5_3:8659735-8659754 | None:intergenic | 35.0% | |
| AAGAATTCCAAGGTTGTTAG+TGG | - | chr5_3:8659771-8659790 | Msa0796630:CDS | 35.0% | |
| TAGTGGAGTTGTTGATATGT+TGG | - | chr5_3:8659788-8659807 | Msa0796630:CDS | 35.0% | |
| ! | ACATTTAGTGGATGGATACA+TGG | - | chr5_3:8659932-8659951 | Msa0796630:CDS | 35.0% |
| !! | CTCTTAGCATTAGCTCTAAA+TGG | + | chr5_3:8659969-8659988 | None:intergenic | 35.0% |
| CTTGTCTAATCTTAGTAGAC+AGG | - | chr5_3:8660091-8660110 | Msa0796630:CDS | 35.0% | |
| AATTTGTGAAGGTTGTGAGC+AGG | + | chr5_3:8658544-8658563 | None:intergenic | 40.0% | |
| ! | GAAGAATGGCATCTGAAACT+AGG | + | chr5_3:8658583-8658602 | None:intergenic | 40.0% |
| ! | TCTTGATAGCCAAAAGCCTT+TGG | - | chr5_3:8658687-8658706 | Msa0796630:CDS | 40.0% |
| ! | TCTTCAGCTGCTTTAATCTC+TGG | + | chr5_3:8658817-8658836 | None:intergenic | 40.0% |
| GAAATATCATCGGGAGAAAG+TGG | - | chr5_3:8658902-8658921 | Msa0796630:CDS | 40.0% | |
| AGAAAGTGGAGGGAATATCA+TGG | - | chr5_3:8658916-8658935 | Msa0796630:CDS | 40.0% | |
| CTGTATGCCACATCATCAAT+TGG | - | chr5_3:8659126-8659145 | Msa0796630:CDS | 40.0% | |
| GAACTTCCACTTGTCTTGAA+TGG | - | chr5_3:8659292-8659311 | Msa0796630:CDS | 40.0% | |
| CTCGGGTAAATCGACTAATT+GGG | + | chr5_3:8659334-8659353 | None:intergenic | 40.0% | |
| ! | ACTCAACTTTGGGCTTTGAT+TGG | + | chr5_3:8659392-8659411 | None:intergenic | 40.0% |
| GAGCTTGTACAAGACAAAAG+GGG | - | chr5_3:8659422-8659441 | Msa0796630:CDS | 40.0% | |
| CCAAATGAAAAAACAGCCAC+GGG | + | chr5_3:8659612-8659631 | None:intergenic | 40.0% | |
| GCCAAATGAAAAAACAGCCA+CGG | + | chr5_3:8659613-8659632 | None:intergenic | 40.0% | |
| !!! | GTGGCTGTTTTTTCATTTGG+CGG | - | chr5_3:8659612-8659631 | Msa0796630:CDS | 40.0% |
| ACACACAAGACGTGATTACA+AGG | - | chr5_3:8659706-8659725 | Msa0796630:CDS | 40.0% | |
| CACACAAGACGTGATTACAA+GGG | - | chr5_3:8659707-8659726 | Msa0796630:CDS | 40.0% | |
| !! | GCCAGGAATATTTTTAAGCG+AGG | - | chr5_3:8659731-8659750 | Msa0796630:CDS | 40.0% |
| AACAACTCCACTAACAACCT+TGG | + | chr5_3:8659781-8659800 | None:intergenic | 40.0% | |
| TTGGAAGAGAACACTCCTTT+GGG | - | chr5_3:8659807-8659826 | Msa0796630:CDS | 40.0% | |
| CCAACATGTGAATATCCCAA+AGG | + | chr5_3:8659825-8659844 | None:intergenic | 40.0% | |
| !! | CCTTTGGGATATTCACATGT+TGG | - | chr5_3:8659822-8659841 | Msa0796630:CDS | 40.0% |
| ACAACAAGCTATGTCAGCAT+CGG | + | chr5_3:8659892-8659911 | None:intergenic | 40.0% | |
| !! | AGCTTGTTGTCATGATCTAG+AGG | - | chr5_3:8659902-8659921 | Msa0796630:CDS | 40.0% |
| AATTTGTGAAGGTTGTGAGC+AGG | + | chr5_3:8658544-8658563 | None:intergenic | 40.0% | |
| ! | GAAGAATGGCATCTGAAACT+AGG | + | chr5_3:8658583-8658602 | None:intergenic | 40.0% |
| ! | TCTTGATAGCCAAAAGCCTT+TGG | - | chr5_3:8658687-8658706 | Msa0796630:CDS | 40.0% |
| ! | TCTTCAGCTGCTTTAATCTC+TGG | + | chr5_3:8658817-8658836 | None:intergenic | 40.0% |
| GAAATATCATCGGGAGAAAG+TGG | - | chr5_3:8658902-8658921 | Msa0796630:CDS | 40.0% | |
| AGAAAGTGGAGGGAATATCA+TGG | - | chr5_3:8658916-8658935 | Msa0796630:CDS | 40.0% | |
| CTGTATGCCACATCATCAAT+TGG | - | chr5_3:8659126-8659145 | Msa0796630:CDS | 40.0% | |
| GAACTTCCACTTGTCTTGAA+TGG | - | chr5_3:8659292-8659311 | Msa0796630:CDS | 40.0% | |
| CTCGGGTAAATCGACTAATT+GGG | + | chr5_3:8659334-8659353 | None:intergenic | 40.0% | |
| ! | ACTCAACTTTGGGCTTTGAT+TGG | + | chr5_3:8659392-8659411 | None:intergenic | 40.0% |
| GAGCTTGTACAAGACAAAAG+GGG | - | chr5_3:8659422-8659441 | Msa0796630:CDS | 40.0% | |
| CCAAATGAAAAAACAGCCAC+GGG | + | chr5_3:8659612-8659631 | None:intergenic | 40.0% | |
| GCCAAATGAAAAAACAGCCA+CGG | + | chr5_3:8659613-8659632 | None:intergenic | 40.0% | |
| !!! | GTGGCTGTTTTTTCATTTGG+CGG | - | chr5_3:8659612-8659631 | Msa0796630:CDS | 40.0% |
| ACACACAAGACGTGATTACA+AGG | - | chr5_3:8659706-8659725 | Msa0796630:CDS | 40.0% | |
| CACACAAGACGTGATTACAA+GGG | - | chr5_3:8659707-8659726 | Msa0796630:CDS | 40.0% | |
| !! | GCCAGGAATATTTTTAAGCG+AGG | - | chr5_3:8659731-8659750 | Msa0796630:CDS | 40.0% |
| AACAACTCCACTAACAACCT+TGG | + | chr5_3:8659781-8659800 | None:intergenic | 40.0% | |
| TTGGAAGAGAACACTCCTTT+GGG | - | chr5_3:8659807-8659826 | Msa0796630:CDS | 40.0% | |
| CCAACATGTGAATATCCCAA+AGG | + | chr5_3:8659825-8659844 | None:intergenic | 40.0% | |
| !! | CCTTTGGGATATTCACATGT+TGG | - | chr5_3:8659822-8659841 | Msa0796630:CDS | 40.0% |
| ACAACAAGCTATGTCAGCAT+CGG | + | chr5_3:8659892-8659911 | None:intergenic | 40.0% | |
| !! | AGCTTGTTGTCATGATCTAG+AGG | - | chr5_3:8659902-8659921 | Msa0796630:CDS | 40.0% |
| !! | TCTCTGGCCATAGTTTTGCT+AGG | + | chr5_3:8658801-8658820 | None:intergenic | 45.0% |
| ACAGCGTCTTCTTTCCAAGA+CGG | - | chr5_3:8658864-8658883 | Msa0796630:CDS | 45.0% | |
| ATATCATCGGGAGAAAGTGG+AGG | - | chr5_3:8658905-8658924 | Msa0796630:CDS | 45.0% | |
| TATCATCGGGAGAAAGTGGA+GGG | - | chr5_3:8658906-8658925 | Msa0796630:CDS | 45.0% | |
| AATATCATGGCAGCAACGAC+TGG | - | chr5_3:8658929-8658948 | Msa0796630:CDS | 45.0% | |
| CATATCTAACAACCTCTCGC+CGG | + | chr5_3:8658987-8659006 | None:intergenic | 45.0% | |
| !! | AAGGACACCTCTTGATGATG+GGG | + | chr5_3:8659075-8659094 | None:intergenic | 45.0% |
| ! | CAAGGACACCTCTTGATGAT+GGG | + | chr5_3:8659076-8659095 | None:intergenic | 45.0% |
| ACAAGGACACCTCTTGATGA+TGG | + | chr5_3:8659077-8659096 | None:intergenic | 45.0% | |
| !! | TCATCAAGAGGTGTCCTTGT+CGG | - | chr5_3:8659077-8659096 | Msa0796630:CDS | 45.0% |
| TGATGTGGCATACAGACTCT+TGG | + | chr5_3:8659121-8659140 | None:intergenic | 45.0% | |
| !! | ACCTAAATGGGTTGATGAGG+TGG | - | chr5_3:8659152-8659171 | Msa0796630:CDS | 45.0% |
| TTCAGCCCATTCAAGACAAG+TGG | + | chr5_3:8659301-8659320 | None:intergenic | 45.0% | |
| CCTCGGGTAAATCGACTAAT+TGG | + | chr5_3:8659335-8659354 | None:intergenic | 45.0% | |
| ! | CCAATTAGTCGATTTACCCG+AGG | - | chr5_3:8659332-8659351 | Msa0796630:CDS | 45.0% |
| TCAAAGCCCAAAGTTGAGTG+TGG | - | chr5_3:8659393-8659412 | Msa0796630:CDS | 45.0% | |
| ! | CACTTCTTCAACAACGGACT+CGG | + | chr5_3:8659466-8659485 | None:intergenic | 45.0% |
| AATTTCCTCGGCCACCAATA+GGG | + | chr5_3:8659565-8659584 | None:intergenic | 45.0% | |
| TAATTTCCTCGGCCACCAAT+AGG | + | chr5_3:8659566-8659585 | None:intergenic | 45.0% | |
| AATGAAAAAACAGCCACGGG+TGG | + | chr5_3:8659609-8659628 | None:intergenic | 45.0% | |
| !!! | CCCGTGGCTGTTTTTTCATT+TGG | - | chr5_3:8659609-8659628 | Msa0796630:CDS | 45.0% |
| GTTGGAAGAGAACACTCCTT+TGG | - | chr5_3:8659806-8659825 | Msa0796630:CDS | 45.0% | |
| CAACAAGCTATGTCAGCATC+GGG | + | chr5_3:8659891-8659910 | None:intergenic | 45.0% | |
| TAGACAGGGATCCATGTCTA+TGG | - | chr5_3:8660106-8660125 | Msa0796630:CDS | 45.0% | |
| ACAACAAGCAGCCATAGACA+TGG | + | chr5_3:8660120-8660139 | None:intergenic | 45.0% | |
| !! | TCTCTGGCCATAGTTTTGCT+AGG | + | chr5_3:8658801-8658820 | None:intergenic | 45.0% |
| ACAGCGTCTTCTTTCCAAGA+CGG | - | chr5_3:8658864-8658883 | Msa0796630:CDS | 45.0% | |
| ATATCATCGGGAGAAAGTGG+AGG | - | chr5_3:8658905-8658924 | Msa0796630:CDS | 45.0% | |
| TATCATCGGGAGAAAGTGGA+GGG | - | chr5_3:8658906-8658925 | Msa0796630:CDS | 45.0% | |
| AATATCATGGCAGCAACGAC+TGG | - | chr5_3:8658929-8658948 | Msa0796630:CDS | 45.0% | |
| CATATCTAACAACCTCTCGC+CGG | + | chr5_3:8658987-8659006 | None:intergenic | 45.0% | |
| !! | AAGGACACCTCTTGATGATG+GGG | + | chr5_3:8659075-8659094 | None:intergenic | 45.0% |
| ! | CAAGGACACCTCTTGATGAT+GGG | + | chr5_3:8659076-8659095 | None:intergenic | 45.0% |
| ACAAGGACACCTCTTGATGA+TGG | + | chr5_3:8659077-8659096 | None:intergenic | 45.0% | |
| !! | TCATCAAGAGGTGTCCTTGT+CGG | - | chr5_3:8659077-8659096 | Msa0796630:CDS | 45.0% |
| TGATGTGGCATACAGACTCT+TGG | + | chr5_3:8659121-8659140 | None:intergenic | 45.0% | |
| !! | ACCTAAATGGGTTGATGAGG+TGG | - | chr5_3:8659152-8659171 | Msa0796630:CDS | 45.0% |
| TTCAGCCCATTCAAGACAAG+TGG | + | chr5_3:8659301-8659320 | None:intergenic | 45.0% | |
| CCTCGGGTAAATCGACTAAT+TGG | + | chr5_3:8659335-8659354 | None:intergenic | 45.0% | |
| ! | CCAATTAGTCGATTTACCCG+AGG | - | chr5_3:8659332-8659351 | Msa0796630:CDS | 45.0% |
| TCAAAGCCCAAAGTTGAGTG+TGG | - | chr5_3:8659393-8659412 | Msa0796630:CDS | 45.0% | |
| ! | CACTTCTTCAACAACGGACT+CGG | + | chr5_3:8659466-8659485 | None:intergenic | 45.0% |
| AATTTCCTCGGCCACCAATA+GGG | + | chr5_3:8659565-8659584 | None:intergenic | 45.0% | |
| TAATTTCCTCGGCCACCAAT+AGG | + | chr5_3:8659566-8659585 | None:intergenic | 45.0% | |
| AATGAAAAAACAGCCACGGG+TGG | + | chr5_3:8659609-8659628 | None:intergenic | 45.0% | |
| !!! | CCCGTGGCTGTTTTTTCATT+TGG | - | chr5_3:8659609-8659628 | Msa0796630:CDS | 45.0% |
| GTTGGAAGAGAACACTCCTT+TGG | - | chr5_3:8659806-8659825 | Msa0796630:CDS | 45.0% | |
| CAACAAGCTATGTCAGCATC+GGG | + | chr5_3:8659891-8659910 | None:intergenic | 45.0% | |
| TAGACAGGGATCCATGTCTA+TGG | - | chr5_3:8660106-8660125 | Msa0796630:CDS | 45.0% | |
| ACAACAAGCAGCCATAGACA+TGG | + | chr5_3:8660120-8660139 | None:intergenic | 45.0% | |
| GTGAAGGTTGTGAGCAGGTA+AGG | + | chr5_3:8658539-8658558 | None:intergenic | 50.0% | |
| GAAGACGCTGTAAGCGTTTC+AGG | + | chr5_3:8658855-8658874 | None:intergenic | 50.0% | |
| GAAGGGGATGTTAGATCCCT+TGG | - | chr5_3:8658951-8658970 | Msa0796630:CDS | 50.0% | |
| ATCCCTTGGATGACAACCTC+CGG | - | chr5_3:8658965-8658984 | Msa0796630:CDS | 50.0% | |
| CGGCGAGAGGTTGTTAGATA+TGG | - | chr5_3:8658985-8659004 | Msa0796630:CDS | 50.0% | |
| GCTTCAGTTGTTGACATGGC+AGG | + | chr5_3:8659051-8659070 | None:intergenic | 50.0% | |
| GGGTGCTTCAGTTGTTGACA+TGG | + | chr5_3:8659055-8659074 | None:intergenic | 50.0% | |
| ! | TGAAGCACCCCATCATCAAG+AGG | - | chr5_3:8659065-8659084 | Msa0796630:CDS | 50.0% |
| GCCACCTCATCAACCCATTT+AGG | + | chr5_3:8659156-8659175 | None:intergenic | 50.0% | |
| TGGGTCATCCAACCAAGATC+TGG | + | chr5_3:8659180-8659199 | None:intergenic | 50.0% | |
| TCAGACTCAGACTCAGACTC+AGG | - | chr5_3:8659359-8659378 | Msa0796630:CDS | 50.0% | |
| ! | CTTCAACAACGGACTCGGAT+AGG | + | chr5_3:8659461-8659480 | None:intergenic | 50.0% |
| GCGTCGCACTTCTTCAACAA+CGG | + | chr5_3:8659472-8659491 | None:intergenic | 50.0% | |
| AAGGCTCTGTTACCAACACG+AGG | + | chr5_3:8659639-8659658 | None:intergenic | 50.0% | |
| !! | CGTGTTGGTAACAGAGCCTT+TGG | - | chr5_3:8659639-8659658 | Msa0796630:CDS | 50.0% |
| ! | TCAGCATCGGGCTTCAAGTA+AGG | + | chr5_3:8659879-8659898 | None:intergenic | 50.0% |
| GTGAAGGTTGTGAGCAGGTA+AGG | + | chr5_3:8658539-8658558 | None:intergenic | 50.0% | |
| GAAGACGCTGTAAGCGTTTC+AGG | + | chr5_3:8658855-8658874 | None:intergenic | 50.0% | |
| GAAGGGGATGTTAGATCCCT+TGG | - | chr5_3:8658951-8658970 | Msa0796630:CDS | 50.0% | |
| ATCCCTTGGATGACAACCTC+CGG | - | chr5_3:8658965-8658984 | Msa0796630:CDS | 50.0% | |
| CGGCGAGAGGTTGTTAGATA+TGG | - | chr5_3:8658985-8659004 | Msa0796630:CDS | 50.0% | |
| GCTTCAGTTGTTGACATGGC+AGG | + | chr5_3:8659051-8659070 | None:intergenic | 50.0% | |
| GGGTGCTTCAGTTGTTGACA+TGG | + | chr5_3:8659055-8659074 | None:intergenic | 50.0% | |
| ! | TGAAGCACCCCATCATCAAG+AGG | - | chr5_3:8659065-8659084 | Msa0796630:CDS | 50.0% |
| GCCACCTCATCAACCCATTT+AGG | + | chr5_3:8659156-8659175 | None:intergenic | 50.0% | |
| TGGGTCATCCAACCAAGATC+TGG | + | chr5_3:8659180-8659199 | None:intergenic | 50.0% | |
| TCAGACTCAGACTCAGACTC+AGG | - | chr5_3:8659359-8659378 | Msa0796630:CDS | 50.0% | |
| ! | CTTCAACAACGGACTCGGAT+AGG | + | chr5_3:8659461-8659480 | None:intergenic | 50.0% |
| GCGTCGCACTTCTTCAACAA+CGG | + | chr5_3:8659472-8659491 | None:intergenic | 50.0% | |
| AAGGCTCTGTTACCAACACG+AGG | + | chr5_3:8659639-8659658 | None:intergenic | 50.0% | |
| !! | CGTGTTGGTAACAGAGCCTT+TGG | - | chr5_3:8659639-8659658 | Msa0796630:CDS | 50.0% |
| ! | TCAGCATCGGGCTTCAAGTA+AGG | + | chr5_3:8659879-8659898 | None:intergenic | 50.0% |
| ! | TGTAAGCGTTTCAGGTGGCG+GGG | + | chr5_3:8658847-8658866 | None:intergenic | 55.0% |
| ! | CTGTAAGCGTTTCAGGTGGC+GGG | + | chr5_3:8658848-8658867 | None:intergenic | 55.0% |
| ! | GCTGTAAGCGTTTCAGGTGG+CGG | + | chr5_3:8658849-8658868 | None:intergenic | 55.0% |
| GACGCTGTAAGCGTTTCAGG+TGG | + | chr5_3:8658852-8658871 | None:intergenic | 55.0% | |
| GCGTCTTCTTTCCAAGACGG+CGG | - | chr5_3:8658867-8658886 | Msa0796630:CDS | 55.0% | |
| TGGAGAATACTCCGCCGTCT+TGG | + | chr5_3:8658881-8658900 | None:intergenic | 55.0% | |
| TCATGGCAGCAACGACTGGA+AGG | - | chr5_3:8658933-8658952 | Msa0796630:CDS | 55.0% | |
| CATGGCAGCAACGACTGGAA+GGG | - | chr5_3:8658934-8658953 | Msa0796630:CDS | 55.0% | |
| ATGGCAGCAACGACTGGAAG+GGG | - | chr5_3:8658935-8658954 | Msa0796630:CDS | 55.0% | |
| ATCTAACAACCTCTCGCCGG+AGG | + | chr5_3:8658984-8659003 | None:intergenic | 55.0% | |
| GATGAGGTGGCACCAGATCT+TGG | - | chr5_3:8659165-8659184 | Msa0796630:CDS | 55.0% | |
| AGGTGGCACCAGATCTTGGT+TGG | - | chr5_3:8659169-8659188 | Msa0796630:CDS | 55.0% | |
| ! | GATGACCCAGCGTTCTAGCT+GGG | - | chr5_3:8659191-8659210 | Msa0796630:CDS | 55.0% |
| TCCAACCCAGCTAGAACGCT+GGG | + | chr5_3:8659199-8659218 | None:intergenic | 55.0% | |
| ATCCAACCCAGCTAGAACGC+TGG | + | chr5_3:8659200-8659219 | None:intergenic | 55.0% | |
| AGTCTGAGTCTGAGCGTCCT+CGG | + | chr5_3:8659352-8659371 | None:intergenic | 55.0% | |
| CAGACTCAGACTCAGGCACA+AGG | - | chr5_3:8659366-8659385 | Msa0796630:CDS | 55.0% | |
| GCCGAGGAAATTAGCACGTG+CGG | - | chr5_3:8659573-8659592 | Msa0796630:CDS | 55.0% | |
| CCCGCACGTGCTAATTTCCT+CGG | + | chr5_3:8659577-8659596 | None:intergenic | 55.0% | |
| CCGAGGAAATTAGCACGTGC+GGG | - | chr5_3:8659574-8659593 | Msa0796630:CDS | 55.0% | |
| ! | TCATTTGGCGGACCTCGTGT+TGG | - | chr5_3:8659624-8659643 | Msa0796630:CDS | 55.0% |
| !! | GACGTGATTACAAGGGTGCC+AGG | - | chr5_3:8659714-8659733 | Msa0796630:CDS | 55.0% |
| ! | TGTAAGCGTTTCAGGTGGCG+GGG | + | chr5_3:8658847-8658866 | None:intergenic | 55.0% |
| ! | CTGTAAGCGTTTCAGGTGGC+GGG | + | chr5_3:8658848-8658867 | None:intergenic | 55.0% |
| ! | GCTGTAAGCGTTTCAGGTGG+CGG | + | chr5_3:8658849-8658868 | None:intergenic | 55.0% |
| GACGCTGTAAGCGTTTCAGG+TGG | + | chr5_3:8658852-8658871 | None:intergenic | 55.0% | |
| GCGTCTTCTTTCCAAGACGG+CGG | - | chr5_3:8658867-8658886 | Msa0796630:CDS | 55.0% | |
| TGGAGAATACTCCGCCGTCT+TGG | + | chr5_3:8658881-8658900 | None:intergenic | 55.0% | |
| TCATGGCAGCAACGACTGGA+AGG | - | chr5_3:8658933-8658952 | Msa0796630:CDS | 55.0% | |
| CATGGCAGCAACGACTGGAA+GGG | - | chr5_3:8658934-8658953 | Msa0796630:CDS | 55.0% | |
| ATGGCAGCAACGACTGGAAG+GGG | - | chr5_3:8658935-8658954 | Msa0796630:CDS | 55.0% | |
| ATCTAACAACCTCTCGCCGG+AGG | + | chr5_3:8658984-8659003 | None:intergenic | 55.0% | |
| GATGAGGTGGCACCAGATCT+TGG | - | chr5_3:8659165-8659184 | Msa0796630:CDS | 55.0% | |
| AGGTGGCACCAGATCTTGGT+TGG | - | chr5_3:8659169-8659188 | Msa0796630:CDS | 55.0% | |
| ! | GATGACCCAGCGTTCTAGCT+GGG | - | chr5_3:8659191-8659210 | Msa0796630:CDS | 55.0% |
| TCCAACCCAGCTAGAACGCT+GGG | + | chr5_3:8659199-8659218 | None:intergenic | 55.0% | |
| ATCCAACCCAGCTAGAACGC+TGG | + | chr5_3:8659200-8659219 | None:intergenic | 55.0% | |
| AGTCTGAGTCTGAGCGTCCT+CGG | + | chr5_3:8659352-8659371 | None:intergenic | 55.0% | |
| CAGACTCAGACTCAGGCACA+AGG | - | chr5_3:8659366-8659385 | Msa0796630:CDS | 55.0% | |
| GCCGAGGAAATTAGCACGTG+CGG | - | chr5_3:8659573-8659592 | Msa0796630:CDS | 55.0% | |
| CCCGCACGTGCTAATTTCCT+CGG | + | chr5_3:8659577-8659596 | None:intergenic | 55.0% | |
| CCGAGGAAATTAGCACGTGC+GGG | - | chr5_3:8659574-8659593 | Msa0796630:CDS | 55.0% | |
| ! | TCATTTGGCGGACCTCGTGT+TGG | - | chr5_3:8659624-8659643 | Msa0796630:CDS | 55.0% |
| !! | GACGTGATTACAAGGGTGCC+AGG | - | chr5_3:8659714-8659733 | Msa0796630:CDS | 55.0% |
| !! | TAAGCGTTTCAGGTGGCGGG+GGG | + | chr5_3:8658845-8658864 | None:intergenic | 60.0% |
| ! | GTAAGCGTTTCAGGTGGCGG+GGG | + | chr5_3:8658846-8658865 | None:intergenic | 60.0% |
| CGCCGGAGGTTGTCATCCAA+GGG | + | chr5_3:8658970-8658989 | None:intergenic | 60.0% | |
| TCGCCGGAGGTTGTCATCCA+AGG | + | chr5_3:8658971-8658990 | None:intergenic | 60.0% | |
| GGATGACCCAGCGTTCTAGC+TGG | - | chr5_3:8659190-8659209 | Msa0796630:CDS | 60.0% | |
| ! | ACCCAGCGTTCTAGCTGGGT+TGG | - | chr5_3:8659195-8659214 | Msa0796630:CDS | 60.0% |
| GTCTGAGTCTGAGCGTCCTC+GGG | + | chr5_3:8659351-8659370 | None:intergenic | 60.0% | |
| ACCGTTACCGGCCATAGCCT+TGG | - | chr5_3:8659528-8659547 | Msa0796630:CDS | 60.0% | |
| GCCAAGGCTATGGCCGGTAA+CGG | + | chr5_3:8659532-8659551 | None:intergenic | 60.0% | |
| CTAGTGTCGCGCCAAGGCTA+TGG | + | chr5_3:8659542-8659561 | None:intergenic | 60.0% | |
| ! | ATAGGGCTAGTGTCGCGCCA+AGG | + | chr5_3:8659548-8659567 | None:intergenic | 60.0% |
| TGGCGCGACACTAGCCCTAT+TGG | - | chr5_3:8659548-8659567 | Msa0796630:CDS | 60.0% | |
| CGCGACACTAGCCCTATTGG+TGG | - | chr5_3:8659551-8659570 | Msa0796630:CDS | 60.0% | |
| ! | ACTAGCCCTATTGGTGGCCG+AGG | - | chr5_3:8659557-8659576 | Msa0796630:CDS | 60.0% |
| !! | TAAGCGTTTCAGGTGGCGGG+GGG | + | chr5_3:8658845-8658864 | None:intergenic | 60.0% |
| ! | GTAAGCGTTTCAGGTGGCGG+GGG | + | chr5_3:8658846-8658865 | None:intergenic | 60.0% |
| CGCCGGAGGTTGTCATCCAA+GGG | + | chr5_3:8658970-8658989 | None:intergenic | 60.0% | |
| TCGCCGGAGGTTGTCATCCA+AGG | + | chr5_3:8658971-8658990 | None:intergenic | 60.0% | |
| GGATGACCCAGCGTTCTAGC+TGG | - | chr5_3:8659190-8659209 | Msa0796630:CDS | 60.0% | |
| ! | ACCCAGCGTTCTAGCTGGGT+TGG | - | chr5_3:8659195-8659214 | Msa0796630:CDS | 60.0% |
| GTCTGAGTCTGAGCGTCCTC+GGG | + | chr5_3:8659351-8659370 | None:intergenic | 60.0% | |
| ACCGTTACCGGCCATAGCCT+TGG | - | chr5_3:8659528-8659547 | Msa0796630:CDS | 60.0% | |
| GCCAAGGCTATGGCCGGTAA+CGG | + | chr5_3:8659532-8659551 | None:intergenic | 60.0% | |
| CTAGTGTCGCGCCAAGGCTA+TGG | + | chr5_3:8659542-8659561 | None:intergenic | 60.0% | |
| ! | ATAGGGCTAGTGTCGCGCCA+AGG | + | chr5_3:8659548-8659567 | None:intergenic | 60.0% |
| TGGCGCGACACTAGCCCTAT+TGG | - | chr5_3:8659548-8659567 | Msa0796630:CDS | 60.0% | |
| CGCGACACTAGCCCTATTGG+TGG | - | chr5_3:8659551-8659570 | Msa0796630:CDS | 60.0% | |
| ! | ACTAGCCCTATTGGTGGCCG+AGG | - | chr5_3:8659557-8659576 | Msa0796630:CDS | 60.0% |
| GGATGACAACCTCCGGCGAG+AGG | - | chr5_3:8658972-8658991 | Msa0796630:CDS | 65.0% | |
| TGTCGCGCCAAGGCTATGGC+CGG | + | chr5_3:8659538-8659557 | None:intergenic | 65.0% | |
| ACAGCCACGGGTGGCACGTT+TGG | + | chr5_3:8659600-8659619 | None:intergenic | 65.0% | |
| GGATGACAACCTCCGGCGAG+AGG | - | chr5_3:8658972-8658991 | Msa0796630:CDS | 65.0% | |
| TGTCGCGCCAAGGCTATGGC+CGG | + | chr5_3:8659538-8659557 | None:intergenic | 65.0% | |
| ACAGCCACGGGTGGCACGTT+TGG | + | chr5_3:8659600-8659619 | None:intergenic | 65.0% | |
| CGGGCCAAACGTGCCACCCG+TGG | - | chr5_3:8659593-8659612 | Msa0796630:CDS | 75.0% | |
| CGGGCCAAACGTGCCACCCG+TGG | - | chr5_3:8659593-8659612 | Msa0796630:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 8658514 | 8660160 | 8658514 | ID=Msa0796630;Name=Msa0796630 |
| chr5_3 | mRNA | 8658514 | 8660160 | 8658514 | ID=Msa0796630-mRNA-1;Parent=Msa0796630;Name=Msa0796630-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|548 |
| chr5_3 | exon | 8658514 | 8660160 | 8658514 | ID=Msa0796630-mRNA-1:exon:3643;Parent=Msa0796630-mRNA-1 |
| chr5_3 | CDS | 8658514 | 8660160 | 8658514 | ID=Msa0796630-mRNA-1:cds;Parent=Msa0796630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
