Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754770 | sp|O23522|PLA14_ARATH | 54.972 | 533 | 198 | 10 | 25 | 548 | 18 | 517 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754770 | G7JXH0 | 97.273 | 550 | 11 | 3 | 1 | 548 | 1 | 548 | 0.0 | 1105 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051050 | Msa0754770 | 0.842715 | 2.182793e-58 | -8.615850e-47 |
| Msa0101240 | Msa0754770 | 0.841647 | 4.184547e-58 | -8.615850e-47 |
| Msa0664540 | Msa0754770 | 0.806398 | 8.389021e-50 | -8.615850e-47 |
| Msa0754770 | Msa0754810 | 0.882437 | 1.042377e-70 | -8.615850e-47 |
| Msa0754770 | Msa0758250 | 0.810340 | 1.210399e-50 | -8.615850e-47 |
| Msa0754770 | Msa0796630 | 0.988670 | 6.148089e-175 | -8.615850e-47 |
| Msa0754770 | Msa0833890 | 0.968060 | 3.830216e-128 | -8.615850e-47 |
| Msa0754770 | Msa0834180 | 0.968452 | 1.070149e-128 | -8.615850e-47 |
| Msa0754770 | Msa0837870 | 0.816497 | 5.363985e-52 | -8.615850e-47 |
| Msa0754770 | Msa0865970 | 0.820574 | 6.383378e-53 | -8.615850e-47 |
| Msa0754770 | Msa0866070 | 0.823733 | 1.181734e-53 | -8.615850e-47 |
| Msa0754770 | Msa1029870 | 0.822355 | 2.476480e-53 | -8.615850e-47 |
| Msa0754770 | Msa1040980 | 0.800595 | 1.338676e-48 | -8.615850e-47 |
| Msa0754770 | Msa1043120 | 0.805736 | 1.155677e-49 | -8.615850e-47 |
| Msa0754770 | Msa1266490 | 0.801532 | 8.612261e-49 | -8.615850e-47 |
| Msa0754770 | Msa1337310 | 0.806132 | 9.543759e-50 | -8.615850e-47 |
| Msa0754770 | Msa1360420 | 0.859494 | 3.979656e-63 | -8.615850e-47 |
| Msa0754770 | Msa1388090 | 0.970352 | 1.734979e-131 | -8.615850e-47 |
| Msa0754770 | Msa1399260 | 0.814466 | 1.519103e-51 | -8.615850e-47 |
| Msa0754770 | Msa1424630 | 0.800610 | 1.329238e-48 | -8.615850e-47 |
| Msa0754770 | Msa1463030 | 0.809228 | 2.099430e-50 | -8.615850e-47 |
| Msa0211200 | Msa0754770 | 0.803166 | 3.968128e-49 | -8.615850e-47 |
| Msa0408340 | Msa0754770 | 0.803983 | 2.686840e-49 | -8.615850e-47 |
| Msa0254260 | Msa0754770 | 0.802743 | 4.854594e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754770 | MtrunA17_Chr5g0399641 | 97.273 | 550 | 11 | 3 | 1 | 548 | 1 | 548 | 0.0 | 1105 |
| Msa0754770 | MtrunA17_Chr4g0055691 | 65.530 | 557 | 137 | 9 | 6 | 546 | 4 | 521 | 0.0 | 717 |
| Msa0754770 | MtrunA17_Chr7g0250561 | 47.423 | 388 | 178 | 8 | 129 | 494 | 65 | 448 | 3.79e-120 | 361 |
| Msa0754770 | MtrunA17_Chr7g0250611 | 45.283 | 371 | 170 | 8 | 133 | 494 | 75 | 421 | 5.41e-109 | 332 |
| Msa0754770 | MtrunA17_Chr4g0039301 | 38.342 | 386 | 200 | 8 | 128 | 495 | 95 | 460 | 5.51e-84 | 271 |
| Msa0754770 | MtrunA17_Chr7g0260671 | 39.267 | 382 | 195 | 11 | 133 | 495 | 74 | 437 | 2.19e-80 | 260 |
| Msa0754770 | MtrunA17_Chr7g0260681 | 39.178 | 365 | 185 | 12 | 133 | 478 | 74 | 420 | 4.23e-76 | 246 |
| Msa0754770 | MtrunA17_Chr2g0283561 | 34.974 | 386 | 192 | 9 | 133 | 495 | 39 | 388 | 2.31e-63 | 213 |
| Msa0754770 | MtrunA17_Chr7g0214711 | 32.524 | 412 | 215 | 13 | 109 | 502 | 80 | 446 | 4.69e-57 | 199 |
| Msa0754770 | MtrunA17_Chr4g0046001 | 32.905 | 389 | 195 | 11 | 133 | 497 | 13 | 359 | 9.73e-52 | 182 |
| Msa0754770 | MtrunA17_Chr4g0046011 | 33.162 | 389 | 194 | 12 | 133 | 497 | 4 | 350 | 5.06e-51 | 180 |
| Msa0754770 | MtrunA17_Chr4g0041311 | 29.250 | 400 | 219 | 10 | 129 | 495 | 24 | 392 | 4.12e-49 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754770 | AT4G16820.1 | 54.972 | 533 | 198 | 10 | 25 | 548 | 18 | 517 | 0.0 | 559 |
| Msa0754770 | AT2G44810.2 | 50.269 | 372 | 167 | 9 | 133 | 496 | 86 | 447 | 5.66e-122 | 366 |
| Msa0754770 | AT2G44810.1 | 50.546 | 366 | 163 | 9 | 139 | 496 | 2 | 357 | 2.86e-119 | 356 |
| Msa0754770 | AT1G30370.1 | 37.831 | 415 | 219 | 10 | 124 | 519 | 105 | 499 | 4.47e-86 | 276 |
| Msa0754770 | AT1G51440.1 | 41.287 | 373 | 169 | 11 | 137 | 483 | 91 | 439 | 5.81e-83 | 268 |
| Msa0754770 | AT2G30550.1 | 39.011 | 364 | 186 | 7 | 137 | 481 | 105 | 451 | 9.19e-79 | 255 |
| Msa0754770 | AT1G06800.1 | 39.426 | 383 | 187 | 10 | 137 | 495 | 89 | 450 | 1.63e-78 | 256 |
| Msa0754770 | AT1G06800.2 | 40.164 | 366 | 174 | 10 | 137 | 478 | 89 | 433 | 2.85e-78 | 253 |
| Msa0754770 | AT2G30550.2 | 38.624 | 378 | 196 | 8 | 137 | 495 | 105 | 465 | 5.75e-78 | 255 |
| Msa0754770 | AT2G31690.1 | 35.616 | 365 | 184 | 11 | 133 | 477 | 88 | 421 | 9.20e-65 | 219 |
| Msa0754770 | AT1G05800.1 | 35.635 | 362 | 185 | 9 | 133 | 477 | 80 | 410 | 1.50e-63 | 215 |
| Msa0754770 | AT4G18550.1 | 32.614 | 417 | 211 | 11 | 133 | 517 | 19 | 397 | 6.63e-59 | 202 |
| Msa0754770 | AT4G18550.2 | 32.614 | 417 | 211 | 11 | 133 | 517 | 36 | 414 | 9.23e-59 | 202 |
| Msa0754770 | AT1G06250.1 | 31.959 | 388 | 202 | 9 | 133 | 495 | 5 | 355 | 2.74e-55 | 192 |
| Msa0754770 | AT2G42690.1 | 32.468 | 385 | 206 | 8 | 137 | 495 | 8 | 364 | 7.46e-52 | 182 |
| Msa0754770 | AT4G18550.3 | 36.207 | 290 | 152 | 8 | 133 | 399 | 36 | 315 | 1.69e-45 | 163 |
| Msa0754770 | AT1G06250.2 | 30.797 | 276 | 142 | 6 | 234 | 495 | 1 | 241 | 2.85e-33 | 129 |
Find 134 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAATTGGATTACCTAAA+TGG | 0.127660 | 5_2:+8483235 | Msa0754770:CDS |
| CCTCGGGTAAATCGACTAAT+TGG | 0.206931 | 5_2:-8483428 | None:intergenic |
| GAAGACGCTGTAAGCGTTTC+AGG | 0.238955 | 5_2:-8482948 | None:intergenic |
| TAACCTAGATGAGTTGTTAT+TGG | 0.251262 | 5_2:-8482737 | None:intergenic |
| CTCTTAGCATTAGCTCTAAA+TGG | 0.258178 | 5_2:-8484062 | None:intergenic |
| CGCCTTTGTAAAGTTCAATA+AGG | 0.276950 | 5_2:-8483587 | None:intergenic |
| AAAAGATGAAGGTTGTTTAA+TGG | 0.278707 | 5_2:-8482701 | None:intergenic |
| TTTCTCCCGATGATATTTCT+TGG | 0.282496 | 5_2:-8482994 | None:intergenic |
| AGAGGCTTATTTACATTTAG+TGG | 0.289753 | 5_2:+8484016 | Msa0754770:CDS |
| ATGATGATTCCAAAGGCTTT+TGG | 0.306541 | 5_2:-8482792 | None:intergenic |
| GCCACCTCATCAACCCATTT+AGG | 0.326253 | 5_2:-8483249 | None:intergenic |
| GTTGTATTGGTTGTTGAAAC+TGG | 0.332759 | 5_2:-8482822 | None:intergenic |
| ACTCAACTTTGGGCTTTGAT+TGG | 0.339758 | 5_2:-8483485 | None:intergenic |
| ACAGCCACGGGTGGCACGTT+TGG | 0.344135 | 5_2:-8483693 | None:intergenic |
| TAATTTCCTCGGCCACCAAT+AGG | 0.366166 | 5_2:-8483659 | None:intergenic |
| CGGCGAGAGGTTGTTAGATA+TGG | 0.368122 | 5_2:+8483081 | Msa0754770:CDS |
| CATAAATCCACACTCAACTT+TGG | 0.371336 | 5_2:-8483496 | None:intergenic |
| CTGTAAGCGTTTCAGGTGGC+GGG | 0.378709 | 5_2:-8482941 | None:intergenic |
| TCTTCAGCTGCTTTAATCTC+TGG | 0.381476 | 5_2:-8482910 | None:intergenic |
| AACTTCCACTTGTCTTGAAT+GGG | 0.386150 | 5_2:+8483389 | Msa0754770:CDS |
| GTTGGAAGAGAACACTCCTT+TGG | 0.394244 | 5_2:+8483902 | Msa0754770:CDS |
| CGTGTTGGTAACAGAGCCTT+TGG | 0.394565 | 5_2:+8483735 | Msa0754770:CDS |
| TAAAAGAGAGATTGCAAGAA+TGG | 0.395214 | 5_2:+8483335 | Msa0754770:CDS |
| ATAAATCCACACTCAACTTT+GGG | 0.396883 | 5_2:-8483495 | None:intergenic |
| TCTTGATAGCCAAAAGCCTT+TGG | 0.405866 | 5_2:+8482783 | Msa0754770:CDS |
| GGATGACCCAGCGTTCTAGC+TGG | 0.407435 | 5_2:+8483286 | Msa0754770:CDS |
| ATCAATTGGATTACCTAAAT+GGG | 0.408997 | 5_2:+8483236 | Msa0754770:CDS |
| GGTTGTTAGATATGGTGATT+TGG | 0.409569 | 5_2:+8483089 | Msa0754770:CDS |
| GAACTTCCACTTGTCTTGAA+TGG | 0.412888 | 5_2:+8483388 | Msa0754770:CDS |
| GACTTAACCTAGCAAAACTA+TGG | 0.417487 | 5_2:+8482887 | Msa0754770:CDS |
| CTGTATGCCACATCATCAAT+TGG | 0.418121 | 5_2:+8483222 | Msa0754770:CDS |
| AATTTCCTCGGCCACCAATA+GGG | 0.421437 | 5_2:-8483658 | None:intergenic |
| ATGAGCTTGTACAAGACAAA+AGG | 0.423174 | 5_2:+8483516 | Msa0754770:CDS |
| TTGGAAGAGAACACTCCTTT+GGG | 0.425192 | 5_2:+8483903 | Msa0754770:CDS |
| GAATTAAGCATAACCGTTAC+CGG | 0.425326 | 5_2:+8483612 | Msa0754770:CDS |
| AAGAATTCCAAGGTTGTTAG+TGG | 0.426321 | 5_2:+8483867 | Msa0754770:CDS |
| ACATTTAGTGGATGGATACA+TGG | 0.441165 | 5_2:+8484028 | Msa0754770:CDS |
| AAACCAATAACAACTCATCT+AGG | 0.443716 | 5_2:+8482734 | Msa0754770:CDS |
| AATATCATGGCAGCAACGAC+TGG | 0.446528 | 5_2:+8483025 | Msa0754770:CDS |
| GATGAGGTGGCACCAGATCT+TGG | 0.447657 | 5_2:+8483261 | Msa0754770:CDS |
| CCCGCACGTGCTAATTTCCT+CGG | 0.448005 | 5_2:-8483670 | None:intergenic |
| TAGACAGGGATCCATGTCTA+TGG | 0.450095 | 5_2:+8484202 | Msa0754770:CDS |
| GTTGTTTAATGGAAGAAGAA+TGG | 0.450283 | 5_2:-8482690 | None:intergenic |
| CACTTCTTCAACAACGGACT+CGG | 0.454486 | 5_2:-8483559 | None:intergenic |
| GTGAAGGTTGTGAGCAGGTA+AGG | 0.457213 | 5_2:-8482632 | None:intergenic |
| GTAAGCGTTTCAGGTGGCGG+GGG | 0.458362 | 5_2:-8482939 | None:intergenic |
| CTTGTCTAATCTTAGTAGAC+AGG | 0.459042 | 5_2:+8484187 | Msa0754770:CDS |
| CTAGTGTCGCGCCAAGGCTA+TGG | 0.467757 | 5_2:-8483635 | None:intergenic |
| GCTGTAAGCGTTTCAGGTGG+CGG | 0.475077 | 5_2:-8482942 | None:intergenic |
| GTCTGAGTCTGAGCGTCCTC+GGG | 0.477426 | 5_2:-8483444 | None:intergenic |
| TCGCCGGAGGTTGTCATCCA+AGG | 0.480124 | 5_2:-8483064 | None:intergenic |
| GAAGGGGATGTTAGATCCCT+TGG | 0.480349 | 5_2:+8483047 | Msa0754770:CDS |
| TGGGTCATCCAACCAAGATC+TGG | 0.480411 | 5_2:-8483273 | None:intergenic |
| TGAAGAGAAGCAAAAGATGA+AGG | 0.480894 | 5_2:-8482712 | None:intergenic |
| GCTTCAGTTGTTGACATGGC+AGG | 0.485069 | 5_2:-8483144 | None:intergenic |
| AGTCTGAGTCTGAGCGTCCT+CGG | 0.485837 | 5_2:-8483445 | None:intergenic |
| TGGAGAATACTCCGCCGTCT+TGG | 0.486287 | 5_2:-8482974 | None:intergenic |
| TATTGGTTGTTGAAACTGGT+TGG | 0.487668 | 5_2:-8482818 | None:intergenic |
| AAAAGAGAGATTGCAAGAAT+GGG | 0.490721 | 5_2:+8483336 | Msa0754770:CDS |
| ACACACAAGACGTGATTACA+AGG | 0.492272 | 5_2:+8483802 | Msa0754770:CDS |
| CTCGGGTAAATCGACTAATT+GGG | 0.499666 | 5_2:-8483427 | None:intergenic |
| AACAACTCCACTAACAACCT+TGG | 0.499945 | 5_2:-8483874 | None:intergenic |
| ACAAGGACACCTCTTGATGA+TGG | 0.502751 | 5_2:-8483170 | None:intergenic |
| TGAGCTTGTACAAGACAAAA+GGG | 0.503559 | 5_2:+8483517 | Msa0754770:CDS |
| CCTTTGGGATATTCACATGT+TGG | 0.504000 | 5_2:+8483918 | Msa0754770:CDS |
| GAAATATCATCGGGAGAAAG+TGG | 0.505201 | 5_2:+8482998 | Msa0754770:CDS |
| CTTCAACAACGGACTCGGAT+AGG | 0.508893 | 5_2:-8483554 | None:intergenic |
| TCAGCATCGGGCTTCAAGTA+AGG | 0.510052 | 5_2:-8483972 | None:intergenic |
| CAACAAGCTATGTCAGCATC+GGG | 0.515189 | 5_2:-8483984 | None:intergenic |
| GCTTATTTACATTTAGTGGA+TGG | 0.516513 | 5_2:+8484020 | Msa0754770:CDS |
| GATGACCCAGCGTTCTAGCT+GGG | 0.518537 | 5_2:+8483287 | Msa0754770:CDS |
| GAAGAATGGCATCTGAAACT+AGG | 0.523536 | 5_2:-8482676 | None:intergenic |
| CAAGGACACCTCTTGATGAT+GGG | 0.525696 | 5_2:-8483169 | None:intergenic |
| TCATCAAGAGGTGTCCTTGT+CGG | 0.525857 | 5_2:+8483173 | Msa0754770:CDS |
| TTGTATACTAGTAAGGCTAA+AGG | 0.526986 | 5_2:+8484131 | Msa0754770:CDS |
| ATCCCTTGGATGACAACCTC+CGG | 0.528647 | 5_2:+8483061 | Msa0754770:CDS |
| ATCCAACCCAGCTAGAACGC+TGG | 0.529696 | 5_2:-8483293 | None:intergenic |
| GACGTGATTACAAGGGTGCC+AGG | 0.535150 | 5_2:+8483810 | Msa0754770:CDS |
| CGCGACACTAGCCCTATTGG+TGG | 0.536052 | 5_2:+8483647 | Msa0754770:CDS |
| TAGTGGAGTTGTTGATATGT+TGG | 0.537325 | 5_2:+8483884 | Msa0754770:CDS |
| TGTAAGCGTTTCAGGTGGCG+GGG | 0.538613 | 5_2:-8482940 | None:intergenic |
| ACCGTTACCGGCCATAGCCT+TGG | 0.539736 | 5_2:+8483624 | Msa0754770:CDS |
| ATGGCAGCAACGACTGGAAG+GGG | 0.541567 | 5_2:+8483031 | Msa0754770:CDS |
| TCAGACTCAGACTCAGACTC+AGG | 0.547611 | 5_2:+8483455 | Msa0754770:CDS |
| ACCTAAATGGGTTGATGAGG+TGG | 0.548455 | 5_2:+8483248 | Msa0754770:CDS |
| ACTAGCCCTATTGGTGGCCG+AGG | 0.548502 | 5_2:+8483653 | Msa0754770:CDS |
| ATTCATGAAGATGATGGACT+AGG | 0.548753 | 5_2:-8484236 | None:intergenic |
| AGGTAATCCAATTGATGATG+TGG | 0.548802 | 5_2:-8483229 | None:intergenic |
| GATATTGTGATATCTCTTCG+TGG | 0.549518 | 5_2:+8483366 | Msa0754770:CDS |
| TTCAGCCCATTCAAGACAAG+TGG | 0.553127 | 5_2:-8483394 | None:intergenic |
| CGCCGGAGGTTGTCATCCAA+GGG | 0.557417 | 5_2:-8483063 | None:intergenic |
| ACAACAAGCTATGTCAGCAT+CGG | 0.563181 | 5_2:-8483985 | None:intergenic |
| TCATGGCAGCAACGACTGGA+AGG | 0.564182 | 5_2:+8483029 | Msa0754770:CDS |
| CGCCTTATTGAACTTTACAA+AGG | 0.564214 | 5_2:+8483585 | Msa0754770:CDS |
| ATTCTCCAAGAAATATCATC+GGG | 0.566867 | 5_2:+8482989 | Msa0754770:CDS |
| AGCTTGTTGTCATGATCTAG+AGG | 0.571065 | 5_2:+8483998 | Msa0754770:CDS |
| TGATGTGGCATACAGACTCT+TGG | 0.573169 | 5_2:-8483214 | None:intergenic |
| TAAGCGTTTCAGGTGGCGGG+GGG | 0.576225 | 5_2:-8482938 | None:intergenic |
| GGGTGCTTCAGTTGTTGACA+TGG | 0.576279 | 5_2:-8483148 | None:intergenic |
| CCGAGGAAATTAGCACGTGC+GGG | 0.576932 | 5_2:+8483670 | Msa0754770:CDS |
| TCATTTGGCGGACCTCGTGT+TGG | 0.577348 | 5_2:+8483720 | Msa0754770:CDS |
| CATATCTAACAACCTCTCGC+CGG | 0.581786 | 5_2:-8483080 | None:intergenic |
| CATGGCAGCAACGACTGGAA+GGG | 0.583943 | 5_2:+8483030 | Msa0754770:CDS |
| AATTTGTGAAGGTTGTGAGC+AGG | 0.587076 | 5_2:-8482637 | None:intergenic |
| GCCAAGGCTATGGCCGGTAA+CGG | 0.591069 | 5_2:-8483625 | None:intergenic |
| TATTCTCCAAGAAATATCAT+CGG | 0.595846 | 5_2:+8482988 | Msa0754770:CDS |
| AGAAAGTGGAGGGAATATCA+TGG | 0.601338 | 5_2:+8483012 | Msa0754770:CDS |
| TTGGTTGATGATGATTCCAA+AGG | 0.613659 | 5_2:-8482799 | None:intergenic |
| AGGTGGCACCAGATCTTGGT+TGG | 0.618491 | 5_2:+8483265 | Msa0754770:CDS |
| GGATGACAACCTCCGGCGAG+AGG | 0.618831 | 5_2:+8483068 | Msa0754770:CDS |
| CAGACTCAGACTCAGGCACA+AGG | 0.619166 | 5_2:+8483462 | Msa0754770:CDS |
| TTAGTGCTTGAAATTTGTGA+AGG | 0.626013 | 5_2:-8482648 | None:intergenic |
| TCAAAGCCCAAAGTTGAGTG+TGG | 0.627127 | 5_2:+8483489 | Msa0754770:CDS |
| ACAACAAGCAGCCATAGACA+TGG | 0.628855 | 5_2:-8484213 | None:intergenic |
| GCGTCGCACTTCTTCAACAA+CGG | 0.630718 | 5_2:-8483565 | None:intergenic |
| TTGTCTAATCTTAGTAGACA+GGG | 0.632883 | 5_2:+8484188 | Msa0754770:CDS |
| ATCTAACAACCTCTCGCCGG+AGG | 0.634684 | 5_2:-8483077 | None:intergenic |
| TGAAGCACCCCATCATCAAG+AGG | 0.635362 | 5_2:+8483161 | Msa0754770:CDS |
| AAGGACACCTCTTGATGATG+GGG | 0.638913 | 5_2:-8483168 | None:intergenic |
| TGTCGCGCCAAGGCTATGGC+CGG | 0.642253 | 5_2:-8483631 | None:intergenic |
| ACAGCGTCTTCTTTCCAAGA+CGG | 0.643880 | 5_2:+8482960 | Msa0754770:CDS |
| TCTGTTAATCTTAATAGACA+AGG | 0.646433 | 5_2:+8484158 | Msa0754770:CDS |
| TATCATCGGGAGAAAGTGGA+GGG | 0.648802 | 5_2:+8483002 | Msa0754770:CDS |
| ATTACCTAAATGGGTTGATG+AGG | 0.663925 | 5_2:+8483245 | Msa0754770:CDS |
| ATATCATCGGGAGAAAGTGG+AGG | 0.666029 | 5_2:+8483001 | Msa0754770:CDS |
| ATAGGGCTAGTGTCGCGCCA+AGG | 0.667674 | 5_2:-8483641 | None:intergenic |
| CCAATTAGTCGATTTACCCG+AGG | 0.667868 | 5_2:+8483428 | Msa0754770:CDS |
| GACGCTGTAAGCGTTTCAGG+TGG | 0.674999 | 5_2:-8482945 | None:intergenic |
| TTTATAAGATCTCTCCGACA+AGG | 0.680022 | 5_2:-8483187 | None:intergenic |
| GCGTCTTCTTTCCAAGACGG+CGG | 0.680773 | 5_2:+8482963 | Msa0754770:CDS |
| CCAACATGTGAATATCCCAA+AGG | 0.681313 | 5_2:-8483918 | None:intergenic |
| GAGCTTGTACAAGACAAAAG+GGG | 0.708452 | 5_2:+8483518 | Msa0754770:CDS |
| CACACAAGACGTGATTACAA+GGG | 0.729372 | 5_2:+8483803 | Msa0754770:CDS |
| AAGGCTCTGTTACCAACACG+AGG | 0.743509 | 5_2:-8483732 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAATTAAGAATTCCA+AGG | + | chr5_2:8483857-8483876 | Msa0754770:CDS | 20.0% |
| !! | AAAAAAGTTGTATACTAGTA+AGG | + | chr5_2:8484124-8484143 | Msa0754770:CDS | 20.0% |
| !! | AGAAAAAATTAAGAATTCCA+AGG | + | chr5_2:8483857-8483876 | Msa0754770:CDS | 20.0% |
| !! | AAAAAAGTTGTATACTAGTA+AGG | + | chr5_2:8484124-8484143 | Msa0754770:CDS | 20.0% |
| ! | AAAAGATGAAGGTTGTTTAA+TGG | - | chr5_2:8482704-8482723 | None:intergenic | 25.0% |
| !!! | TTTTTGTCACTTTTTTGGAT+AGG | - | chr5_2:8482847-8482866 | None:intergenic | 25.0% |
| ! | ATCCAAAAAAGTGACAAAAA+AGG | + | chr5_2:8482847-8482866 | Msa0754770:CDS | 25.0% |
| !!! | TTCCTTTTTTGTCACTTTTT+TGG | - | chr5_2:8482852-8482871 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAACTTTCTTGA+AGG | + | chr5_2:8482865-8482884 | Msa0754770:CDS | 25.0% |
| ! | TATTCTCCAAGAAATATCAT+CGG | + | chr5_2:8482988-8483007 | Msa0754770:CDS | 25.0% |
| ! | ATCAATTGGATTACCTAAAT+GGG | + | chr5_2:8483236-8483255 | Msa0754770:CDS | 25.0% |
| ! | TCTGTTAATCTTAATAGACA+AGG | + | chr5_2:8484158-8484177 | Msa0754770:CDS | 25.0% |
| ! | AAAAGATGAAGGTTGTTTAA+TGG | - | chr5_2:8482704-8482723 | None:intergenic | 25.0% |
| !!! | TTTTTGTCACTTTTTTGGAT+AGG | - | chr5_2:8482847-8482866 | None:intergenic | 25.0% |
| ! | ATCCAAAAAAGTGACAAAAA+AGG | + | chr5_2:8482847-8482866 | Msa0754770:CDS | 25.0% |
| !!! | TTCCTTTTTTGTCACTTTTT+TGG | - | chr5_2:8482852-8482871 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAACTTTCTTGA+AGG | + | chr5_2:8482865-8482884 | Msa0754770:CDS | 25.0% |
| ! | TATTCTCCAAGAAATATCAT+CGG | + | chr5_2:8482988-8483007 | Msa0754770:CDS | 25.0% |
| ! | ATCAATTGGATTACCTAAAT+GGG | + | chr5_2:8483236-8483255 | Msa0754770:CDS | 25.0% |
| ! | TCTGTTAATCTTAATAGACA+AGG | + | chr5_2:8484158-8484177 | Msa0754770:CDS | 25.0% |
| TTAGTGCTTGAAATTTGTGA+AGG | - | chr5_2:8482651-8482670 | None:intergenic | 30.0% | |
| GTTGTTTAATGGAAGAAGAA+TGG | - | chr5_2:8482693-8482712 | None:intergenic | 30.0% | |
| AAACCAATAACAACTCATCT+AGG | + | chr5_2:8482734-8482753 | Msa0754770:CDS | 30.0% | |
| TAACCTAGATGAGTTGTTAT+TGG | - | chr5_2:8482740-8482759 | None:intergenic | 30.0% | |
| !!! | CTTTTTTGGATAGGTTGTAT+TGG | - | chr5_2:8482838-8482857 | None:intergenic | 30.0% |
| ATTCTCCAAGAAATATCATC+GGG | + | chr5_2:8482989-8483008 | Msa0754770:CDS | 30.0% | |
| CATCAATTGGATTACCTAAA+TGG | + | chr5_2:8483235-8483254 | Msa0754770:CDS | 30.0% | |
| TAAAAGAGAGATTGCAAGAA+TGG | + | chr5_2:8483335-8483354 | Msa0754770:CDS | 30.0% | |
| AAAAGAGAGATTGCAAGAAT+GGG | + | chr5_2:8483336-8483355 | Msa0754770:CDS | 30.0% | |
| ATAAATCCACACTCAACTTT+GGG | - | chr5_2:8483498-8483517 | None:intergenic | 30.0% | |
| AGAGGCTTATTTACATTTAG+TGG | + | chr5_2:8484016-8484035 | Msa0754770:CDS | 30.0% | |
| GCTTATTTACATTTAGTGGA+TGG | + | chr5_2:8484020-8484039 | Msa0754770:CDS | 30.0% | |
| TTGTATACTAGTAAGGCTAA+AGG | + | chr5_2:8484131-8484150 | Msa0754770:CDS | 30.0% | |
| TTGTCTAATCTTAGTAGACA+GGG | + | chr5_2:8484188-8484207 | Msa0754770:CDS | 30.0% | |
| TTAGTGCTTGAAATTTGTGA+AGG | - | chr5_2:8482651-8482670 | None:intergenic | 30.0% | |
| GTTGTTTAATGGAAGAAGAA+TGG | - | chr5_2:8482693-8482712 | None:intergenic | 30.0% | |
| AAACCAATAACAACTCATCT+AGG | + | chr5_2:8482734-8482753 | Msa0754770:CDS | 30.0% | |
| TAACCTAGATGAGTTGTTAT+TGG | - | chr5_2:8482740-8482759 | None:intergenic | 30.0% | |
| !!! | CTTTTTTGGATAGGTTGTAT+TGG | - | chr5_2:8482838-8482857 | None:intergenic | 30.0% |
| ATTCTCCAAGAAATATCATC+GGG | + | chr5_2:8482989-8483008 | Msa0754770:CDS | 30.0% | |
| CATCAATTGGATTACCTAAA+TGG | + | chr5_2:8483235-8483254 | Msa0754770:CDS | 30.0% | |
| TAAAAGAGAGATTGCAAGAA+TGG | + | chr5_2:8483335-8483354 | Msa0754770:CDS | 30.0% | |
| AAAAGAGAGATTGCAAGAAT+GGG | + | chr5_2:8483336-8483355 | Msa0754770:CDS | 30.0% | |
| ATAAATCCACACTCAACTTT+GGG | - | chr5_2:8483498-8483517 | None:intergenic | 30.0% | |
| AGAGGCTTATTTACATTTAG+TGG | + | chr5_2:8484016-8484035 | Msa0754770:CDS | 30.0% | |
| GCTTATTTACATTTAGTGGA+TGG | + | chr5_2:8484020-8484039 | Msa0754770:CDS | 30.0% | |
| TTGTATACTAGTAAGGCTAA+AGG | + | chr5_2:8484131-8484150 | Msa0754770:CDS | 30.0% | |
| TTGTCTAATCTTAGTAGACA+GGG | + | chr5_2:8484188-8484207 | Msa0754770:CDS | 30.0% | |
| TGAAGAGAAGCAAAAGATGA+AGG | - | chr5_2:8482715-8482734 | None:intergenic | 35.0% | |
| ! | ATGATGATTCCAAAGGCTTT+TGG | - | chr5_2:8482795-8482814 | None:intergenic | 35.0% |
| !! | TTGGTTGATGATGATTCCAA+AGG | - | chr5_2:8482802-8482821 | None:intergenic | 35.0% |
| ! | TATTGGTTGTTGAAACTGGT+TGG | - | chr5_2:8482821-8482840 | None:intergenic | 35.0% |
| !! | GTTGTATTGGTTGTTGAAAC+TGG | - | chr5_2:8482825-8482844 | None:intergenic | 35.0% |
| GACTTAACCTAGCAAAACTA+TGG | + | chr5_2:8482887-8482906 | Msa0754770:CDS | 35.0% | |
| TTTCTCCCGATGATATTTCT+TGG | - | chr5_2:8482997-8483016 | None:intergenic | 35.0% | |
| GGTTGTTAGATATGGTGATT+TGG | + | chr5_2:8483089-8483108 | Msa0754770:CDS | 35.0% | |
| TTTATAAGATCTCTCCGACA+AGG | - | chr5_2:8483190-8483209 | None:intergenic | 35.0% | |
| !! | AGGTAATCCAATTGATGATG+TGG | - | chr5_2:8483232-8483251 | None:intergenic | 35.0% |
| !! | ATTACCTAAATGGGTTGATG+AGG | + | chr5_2:8483245-8483264 | Msa0754770:CDS | 35.0% |
| GATATTGTGATATCTCTTCG+TGG | + | chr5_2:8483366-8483385 | Msa0754770:CDS | 35.0% | |
| AACTTCCACTTGTCTTGAAT+GGG | + | chr5_2:8483389-8483408 | Msa0754770:CDS | 35.0% | |
| CATAAATCCACACTCAACTT+TGG | - | chr5_2:8483499-8483518 | None:intergenic | 35.0% | |
| ATGAGCTTGTACAAGACAAA+AGG | + | chr5_2:8483516-8483535 | Msa0754770:CDS | 35.0% | |
| TGAGCTTGTACAAGACAAAA+GGG | + | chr5_2:8483517-8483536 | Msa0754770:CDS | 35.0% | |
| ! | CGCCTTATTGAACTTTACAA+AGG | + | chr5_2:8483585-8483604 | Msa0754770:CDS | 35.0% |
| CGCCTTTGTAAAGTTCAATA+AGG | - | chr5_2:8483590-8483609 | None:intergenic | 35.0% | |
| GAATTAAGCATAACCGTTAC+CGG | + | chr5_2:8483612-8483631 | Msa0754770:CDS | 35.0% | |
| !! | CTTTTCAAGATGTTCTCCAA+AGG | - | chr5_2:8483754-8483773 | None:intergenic | 35.0% |
| TCCTCGCTTAAAAATATTCC+TGG | - | chr5_2:8483831-8483850 | None:intergenic | 35.0% | |
| AAGAATTCCAAGGTTGTTAG+TGG | + | chr5_2:8483867-8483886 | Msa0754770:CDS | 35.0% | |
| TAGTGGAGTTGTTGATATGT+TGG | + | chr5_2:8483884-8483903 | Msa0754770:CDS | 35.0% | |
| ! | ACATTTAGTGGATGGATACA+TGG | + | chr5_2:8484028-8484047 | Msa0754770:CDS | 35.0% |
| !! | CTCTTAGCATTAGCTCTAAA+TGG | - | chr5_2:8484065-8484084 | None:intergenic | 35.0% |
| CTTGTCTAATCTTAGTAGAC+AGG | + | chr5_2:8484187-8484206 | Msa0754770:CDS | 35.0% | |
| TGAAGAGAAGCAAAAGATGA+AGG | - | chr5_2:8482715-8482734 | None:intergenic | 35.0% | |
| ! | ATGATGATTCCAAAGGCTTT+TGG | - | chr5_2:8482795-8482814 | None:intergenic | 35.0% |
| !! | TTGGTTGATGATGATTCCAA+AGG | - | chr5_2:8482802-8482821 | None:intergenic | 35.0% |
| ! | TATTGGTTGTTGAAACTGGT+TGG | - | chr5_2:8482821-8482840 | None:intergenic | 35.0% |
| !! | GTTGTATTGGTTGTTGAAAC+TGG | - | chr5_2:8482825-8482844 | None:intergenic | 35.0% |
| GACTTAACCTAGCAAAACTA+TGG | + | chr5_2:8482887-8482906 | Msa0754770:CDS | 35.0% | |
| TTTCTCCCGATGATATTTCT+TGG | - | chr5_2:8482997-8483016 | None:intergenic | 35.0% | |
| GGTTGTTAGATATGGTGATT+TGG | + | chr5_2:8483089-8483108 | Msa0754770:CDS | 35.0% | |
| TTTATAAGATCTCTCCGACA+AGG | - | chr5_2:8483190-8483209 | None:intergenic | 35.0% | |
| !! | AGGTAATCCAATTGATGATG+TGG | - | chr5_2:8483232-8483251 | None:intergenic | 35.0% |
| !! | ATTACCTAAATGGGTTGATG+AGG | + | chr5_2:8483245-8483264 | Msa0754770:CDS | 35.0% |
| GATATTGTGATATCTCTTCG+TGG | + | chr5_2:8483366-8483385 | Msa0754770:CDS | 35.0% | |
| AACTTCCACTTGTCTTGAAT+GGG | + | chr5_2:8483389-8483408 | Msa0754770:CDS | 35.0% | |
| CATAAATCCACACTCAACTT+TGG | - | chr5_2:8483499-8483518 | None:intergenic | 35.0% | |
| ATGAGCTTGTACAAGACAAA+AGG | + | chr5_2:8483516-8483535 | Msa0754770:CDS | 35.0% | |
| TGAGCTTGTACAAGACAAAA+GGG | + | chr5_2:8483517-8483536 | Msa0754770:CDS | 35.0% | |
| ! | CGCCTTATTGAACTTTACAA+AGG | + | chr5_2:8483585-8483604 | Msa0754770:CDS | 35.0% |
| CGCCTTTGTAAAGTTCAATA+AGG | - | chr5_2:8483590-8483609 | None:intergenic | 35.0% | |
| GAATTAAGCATAACCGTTAC+CGG | + | chr5_2:8483612-8483631 | Msa0754770:CDS | 35.0% | |
| !! | CTTTTCAAGATGTTCTCCAA+AGG | - | chr5_2:8483754-8483773 | None:intergenic | 35.0% |
| TCCTCGCTTAAAAATATTCC+TGG | - | chr5_2:8483831-8483850 | None:intergenic | 35.0% | |
| AAGAATTCCAAGGTTGTTAG+TGG | + | chr5_2:8483867-8483886 | Msa0754770:CDS | 35.0% | |
| TAGTGGAGTTGTTGATATGT+TGG | + | chr5_2:8483884-8483903 | Msa0754770:CDS | 35.0% | |
| ! | ACATTTAGTGGATGGATACA+TGG | + | chr5_2:8484028-8484047 | Msa0754770:CDS | 35.0% |
| !! | CTCTTAGCATTAGCTCTAAA+TGG | - | chr5_2:8484065-8484084 | None:intergenic | 35.0% |
| CTTGTCTAATCTTAGTAGAC+AGG | + | chr5_2:8484187-8484206 | Msa0754770:CDS | 35.0% | |
| AATTTGTGAAGGTTGTGAGC+AGG | - | chr5_2:8482640-8482659 | None:intergenic | 40.0% | |
| ! | GAAGAATGGCATCTGAAACT+AGG | - | chr5_2:8482679-8482698 | None:intergenic | 40.0% |
| ! | TCTTGATAGCCAAAAGCCTT+TGG | + | chr5_2:8482783-8482802 | Msa0754770:CDS | 40.0% |
| ! | TCTTCAGCTGCTTTAATCTC+TGG | - | chr5_2:8482913-8482932 | None:intergenic | 40.0% |
| GAAATATCATCGGGAGAAAG+TGG | + | chr5_2:8482998-8483017 | Msa0754770:CDS | 40.0% | |
| AGAAAGTGGAGGGAATATCA+TGG | + | chr5_2:8483012-8483031 | Msa0754770:CDS | 40.0% | |
| CTGTATGCCACATCATCAAT+TGG | + | chr5_2:8483222-8483241 | Msa0754770:CDS | 40.0% | |
| GAACTTCCACTTGTCTTGAA+TGG | + | chr5_2:8483388-8483407 | Msa0754770:CDS | 40.0% | |
| CTCGGGTAAATCGACTAATT+GGG | - | chr5_2:8483430-8483449 | None:intergenic | 40.0% | |
| ! | ACTCAACTTTGGGCTTTGAT+TGG | - | chr5_2:8483488-8483507 | None:intergenic | 40.0% |
| GAGCTTGTACAAGACAAAAG+GGG | + | chr5_2:8483518-8483537 | Msa0754770:CDS | 40.0% | |
| CCAAATGAAAAAACAGCCAC+GGG | - | chr5_2:8483708-8483727 | None:intergenic | 40.0% | |
| GCCAAATGAAAAAACAGCCA+CGG | - | chr5_2:8483709-8483728 | None:intergenic | 40.0% | |
| !!! | GTGGCTGTTTTTTCATTTGG+CGG | + | chr5_2:8483708-8483727 | Msa0754770:CDS | 40.0% |
| ACACACAAGACGTGATTACA+AGG | + | chr5_2:8483802-8483821 | Msa0754770:CDS | 40.0% | |
| CACACAAGACGTGATTACAA+GGG | + | chr5_2:8483803-8483822 | Msa0754770:CDS | 40.0% | |
| !! | GCCAGGAATATTTTTAAGCG+AGG | + | chr5_2:8483827-8483846 | Msa0754770:CDS | 40.0% |
| AACAACTCCACTAACAACCT+TGG | - | chr5_2:8483877-8483896 | None:intergenic | 40.0% | |
| TTGGAAGAGAACACTCCTTT+GGG | + | chr5_2:8483903-8483922 | Msa0754770:CDS | 40.0% | |
| CCAACATGTGAATATCCCAA+AGG | - | chr5_2:8483921-8483940 | None:intergenic | 40.0% | |
| !! | CCTTTGGGATATTCACATGT+TGG | + | chr5_2:8483918-8483937 | Msa0754770:CDS | 40.0% |
| ACAACAAGCTATGTCAGCAT+CGG | - | chr5_2:8483988-8484007 | None:intergenic | 40.0% | |
| !! | AGCTTGTTGTCATGATCTAG+AGG | + | chr5_2:8483998-8484017 | Msa0754770:CDS | 40.0% |
| AATTTGTGAAGGTTGTGAGC+AGG | - | chr5_2:8482640-8482659 | None:intergenic | 40.0% | |
| ! | GAAGAATGGCATCTGAAACT+AGG | - | chr5_2:8482679-8482698 | None:intergenic | 40.0% |
| ! | TCTTGATAGCCAAAAGCCTT+TGG | + | chr5_2:8482783-8482802 | Msa0754770:CDS | 40.0% |
| ! | TCTTCAGCTGCTTTAATCTC+TGG | - | chr5_2:8482913-8482932 | None:intergenic | 40.0% |
| GAAATATCATCGGGAGAAAG+TGG | + | chr5_2:8482998-8483017 | Msa0754770:CDS | 40.0% | |
| AGAAAGTGGAGGGAATATCA+TGG | + | chr5_2:8483012-8483031 | Msa0754770:CDS | 40.0% | |
| CTGTATGCCACATCATCAAT+TGG | + | chr5_2:8483222-8483241 | Msa0754770:CDS | 40.0% | |
| GAACTTCCACTTGTCTTGAA+TGG | + | chr5_2:8483388-8483407 | Msa0754770:CDS | 40.0% | |
| CTCGGGTAAATCGACTAATT+GGG | - | chr5_2:8483430-8483449 | None:intergenic | 40.0% | |
| ! | ACTCAACTTTGGGCTTTGAT+TGG | - | chr5_2:8483488-8483507 | None:intergenic | 40.0% |
| GAGCTTGTACAAGACAAAAG+GGG | + | chr5_2:8483518-8483537 | Msa0754770:CDS | 40.0% | |
| CCAAATGAAAAAACAGCCAC+GGG | - | chr5_2:8483708-8483727 | None:intergenic | 40.0% | |
| GCCAAATGAAAAAACAGCCA+CGG | - | chr5_2:8483709-8483728 | None:intergenic | 40.0% | |
| !!! | GTGGCTGTTTTTTCATTTGG+CGG | + | chr5_2:8483708-8483727 | Msa0754770:CDS | 40.0% |
| ACACACAAGACGTGATTACA+AGG | + | chr5_2:8483802-8483821 | Msa0754770:CDS | 40.0% | |
| CACACAAGACGTGATTACAA+GGG | + | chr5_2:8483803-8483822 | Msa0754770:CDS | 40.0% | |
| !! | GCCAGGAATATTTTTAAGCG+AGG | + | chr5_2:8483827-8483846 | Msa0754770:CDS | 40.0% |
| AACAACTCCACTAACAACCT+TGG | - | chr5_2:8483877-8483896 | None:intergenic | 40.0% | |
| TTGGAAGAGAACACTCCTTT+GGG | + | chr5_2:8483903-8483922 | Msa0754770:CDS | 40.0% | |
| CCAACATGTGAATATCCCAA+AGG | - | chr5_2:8483921-8483940 | None:intergenic | 40.0% | |
| !! | CCTTTGGGATATTCACATGT+TGG | + | chr5_2:8483918-8483937 | Msa0754770:CDS | 40.0% |
| ACAACAAGCTATGTCAGCAT+CGG | - | chr5_2:8483988-8484007 | None:intergenic | 40.0% | |
| !! | AGCTTGTTGTCATGATCTAG+AGG | + | chr5_2:8483998-8484017 | Msa0754770:CDS | 40.0% |
| !! | TCTCTGGCCATAGTTTTGCT+AGG | - | chr5_2:8482897-8482916 | None:intergenic | 45.0% |
| ACAGCGTCTTCTTTCCAAGA+CGG | + | chr5_2:8482960-8482979 | Msa0754770:CDS | 45.0% | |
| ATATCATCGGGAGAAAGTGG+AGG | + | chr5_2:8483001-8483020 | Msa0754770:CDS | 45.0% | |
| TATCATCGGGAGAAAGTGGA+GGG | + | chr5_2:8483002-8483021 | Msa0754770:CDS | 45.0% | |
| AATATCATGGCAGCAACGAC+TGG | + | chr5_2:8483025-8483044 | Msa0754770:CDS | 45.0% | |
| CATATCTAACAACCTCTCGC+CGG | - | chr5_2:8483083-8483102 | None:intergenic | 45.0% | |
| !! | AAGGACACCTCTTGATGATG+GGG | - | chr5_2:8483171-8483190 | None:intergenic | 45.0% |
| ! | CAAGGACACCTCTTGATGAT+GGG | - | chr5_2:8483172-8483191 | None:intergenic | 45.0% |
| ACAAGGACACCTCTTGATGA+TGG | - | chr5_2:8483173-8483192 | None:intergenic | 45.0% | |
| !! | TCATCAAGAGGTGTCCTTGT+CGG | + | chr5_2:8483173-8483192 | Msa0754770:CDS | 45.0% |
| TGATGTGGCATACAGACTCT+TGG | - | chr5_2:8483217-8483236 | None:intergenic | 45.0% | |
| !! | ACCTAAATGGGTTGATGAGG+TGG | + | chr5_2:8483248-8483267 | Msa0754770:CDS | 45.0% |
| TTCAGCCCATTCAAGACAAG+TGG | - | chr5_2:8483397-8483416 | None:intergenic | 45.0% | |
| CCTCGGGTAAATCGACTAAT+TGG | - | chr5_2:8483431-8483450 | None:intergenic | 45.0% | |
| ! | CCAATTAGTCGATTTACCCG+AGG | + | chr5_2:8483428-8483447 | Msa0754770:CDS | 45.0% |
| TCAAAGCCCAAAGTTGAGTG+TGG | + | chr5_2:8483489-8483508 | Msa0754770:CDS | 45.0% | |
| ! | CACTTCTTCAACAACGGACT+CGG | - | chr5_2:8483562-8483581 | None:intergenic | 45.0% |
| AATTTCCTCGGCCACCAATA+GGG | - | chr5_2:8483661-8483680 | None:intergenic | 45.0% | |
| TAATTTCCTCGGCCACCAAT+AGG | - | chr5_2:8483662-8483681 | None:intergenic | 45.0% | |
| AATGAAAAAACAGCCACGGG+TGG | - | chr5_2:8483705-8483724 | None:intergenic | 45.0% | |
| !!! | CCCGTGGCTGTTTTTTCATT+TGG | + | chr5_2:8483705-8483724 | Msa0754770:CDS | 45.0% |
| GTTGGAAGAGAACACTCCTT+TGG | + | chr5_2:8483902-8483921 | Msa0754770:CDS | 45.0% | |
| CAACAAGCTATGTCAGCATC+GGG | - | chr5_2:8483987-8484006 | None:intergenic | 45.0% | |
| TAGACAGGGATCCATGTCTA+TGG | + | chr5_2:8484202-8484221 | Msa0754770:CDS | 45.0% | |
| ACAACAAGCAGCCATAGACA+TGG | - | chr5_2:8484216-8484235 | None:intergenic | 45.0% | |
| !! | TCTCTGGCCATAGTTTTGCT+AGG | - | chr5_2:8482897-8482916 | None:intergenic | 45.0% |
| ACAGCGTCTTCTTTCCAAGA+CGG | + | chr5_2:8482960-8482979 | Msa0754770:CDS | 45.0% | |
| ATATCATCGGGAGAAAGTGG+AGG | + | chr5_2:8483001-8483020 | Msa0754770:CDS | 45.0% | |
| TATCATCGGGAGAAAGTGGA+GGG | + | chr5_2:8483002-8483021 | Msa0754770:CDS | 45.0% | |
| AATATCATGGCAGCAACGAC+TGG | + | chr5_2:8483025-8483044 | Msa0754770:CDS | 45.0% | |
| CATATCTAACAACCTCTCGC+CGG | - | chr5_2:8483083-8483102 | None:intergenic | 45.0% | |
| !! | AAGGACACCTCTTGATGATG+GGG | - | chr5_2:8483171-8483190 | None:intergenic | 45.0% |
| ! | CAAGGACACCTCTTGATGAT+GGG | - | chr5_2:8483172-8483191 | None:intergenic | 45.0% |
| ACAAGGACACCTCTTGATGA+TGG | - | chr5_2:8483173-8483192 | None:intergenic | 45.0% | |
| !! | TCATCAAGAGGTGTCCTTGT+CGG | + | chr5_2:8483173-8483192 | Msa0754770:CDS | 45.0% |
| TGATGTGGCATACAGACTCT+TGG | - | chr5_2:8483217-8483236 | None:intergenic | 45.0% | |
| !! | ACCTAAATGGGTTGATGAGG+TGG | + | chr5_2:8483248-8483267 | Msa0754770:CDS | 45.0% |
| TTCAGCCCATTCAAGACAAG+TGG | - | chr5_2:8483397-8483416 | None:intergenic | 45.0% | |
| CCTCGGGTAAATCGACTAAT+TGG | - | chr5_2:8483431-8483450 | None:intergenic | 45.0% | |
| ! | CCAATTAGTCGATTTACCCG+AGG | + | chr5_2:8483428-8483447 | Msa0754770:CDS | 45.0% |
| TCAAAGCCCAAAGTTGAGTG+TGG | + | chr5_2:8483489-8483508 | Msa0754770:CDS | 45.0% | |
| ! | CACTTCTTCAACAACGGACT+CGG | - | chr5_2:8483562-8483581 | None:intergenic | 45.0% |
| AATTTCCTCGGCCACCAATA+GGG | - | chr5_2:8483661-8483680 | None:intergenic | 45.0% | |
| TAATTTCCTCGGCCACCAAT+AGG | - | chr5_2:8483662-8483681 | None:intergenic | 45.0% | |
| AATGAAAAAACAGCCACGGG+TGG | - | chr5_2:8483705-8483724 | None:intergenic | 45.0% | |
| !!! | CCCGTGGCTGTTTTTTCATT+TGG | + | chr5_2:8483705-8483724 | Msa0754770:CDS | 45.0% |
| GTTGGAAGAGAACACTCCTT+TGG | + | chr5_2:8483902-8483921 | Msa0754770:CDS | 45.0% | |
| CAACAAGCTATGTCAGCATC+GGG | - | chr5_2:8483987-8484006 | None:intergenic | 45.0% | |
| TAGACAGGGATCCATGTCTA+TGG | + | chr5_2:8484202-8484221 | Msa0754770:CDS | 45.0% | |
| ACAACAAGCAGCCATAGACA+TGG | - | chr5_2:8484216-8484235 | None:intergenic | 45.0% | |
| GTGAAGGTTGTGAGCAGGTA+AGG | - | chr5_2:8482635-8482654 | None:intergenic | 50.0% | |
| GAAGACGCTGTAAGCGTTTC+AGG | - | chr5_2:8482951-8482970 | None:intergenic | 50.0% | |
| GAAGGGGATGTTAGATCCCT+TGG | + | chr5_2:8483047-8483066 | Msa0754770:CDS | 50.0% | |
| ATCCCTTGGATGACAACCTC+CGG | + | chr5_2:8483061-8483080 | Msa0754770:CDS | 50.0% | |
| CGGCGAGAGGTTGTTAGATA+TGG | + | chr5_2:8483081-8483100 | Msa0754770:CDS | 50.0% | |
| GCTTCAGTTGTTGACATGGC+AGG | - | chr5_2:8483147-8483166 | None:intergenic | 50.0% | |
| GGGTGCTTCAGTTGTTGACA+TGG | - | chr5_2:8483151-8483170 | None:intergenic | 50.0% | |
| ! | TGAAGCACCCCATCATCAAG+AGG | + | chr5_2:8483161-8483180 | Msa0754770:CDS | 50.0% |
| GCCACCTCATCAACCCATTT+AGG | - | chr5_2:8483252-8483271 | None:intergenic | 50.0% | |
| TGGGTCATCCAACCAAGATC+TGG | - | chr5_2:8483276-8483295 | None:intergenic | 50.0% | |
| TCAGACTCAGACTCAGACTC+AGG | + | chr5_2:8483455-8483474 | Msa0754770:CDS | 50.0% | |
| ! | CTTCAACAACGGACTCGGAT+AGG | - | chr5_2:8483557-8483576 | None:intergenic | 50.0% |
| GCGTCGCACTTCTTCAACAA+CGG | - | chr5_2:8483568-8483587 | None:intergenic | 50.0% | |
| AAGGCTCTGTTACCAACACG+AGG | - | chr5_2:8483735-8483754 | None:intergenic | 50.0% | |
| !! | CGTGTTGGTAACAGAGCCTT+TGG | + | chr5_2:8483735-8483754 | Msa0754770:CDS | 50.0% |
| ! | TCAGCATCGGGCTTCAAGTA+AGG | - | chr5_2:8483975-8483994 | None:intergenic | 50.0% |
| GTGAAGGTTGTGAGCAGGTA+AGG | - | chr5_2:8482635-8482654 | None:intergenic | 50.0% | |
| GAAGACGCTGTAAGCGTTTC+AGG | - | chr5_2:8482951-8482970 | None:intergenic | 50.0% | |
| GAAGGGGATGTTAGATCCCT+TGG | + | chr5_2:8483047-8483066 | Msa0754770:CDS | 50.0% | |
| ATCCCTTGGATGACAACCTC+CGG | + | chr5_2:8483061-8483080 | Msa0754770:CDS | 50.0% | |
| CGGCGAGAGGTTGTTAGATA+TGG | + | chr5_2:8483081-8483100 | Msa0754770:CDS | 50.0% | |
| GCTTCAGTTGTTGACATGGC+AGG | - | chr5_2:8483147-8483166 | None:intergenic | 50.0% | |
| GGGTGCTTCAGTTGTTGACA+TGG | - | chr5_2:8483151-8483170 | None:intergenic | 50.0% | |
| ! | TGAAGCACCCCATCATCAAG+AGG | + | chr5_2:8483161-8483180 | Msa0754770:CDS | 50.0% |
| GCCACCTCATCAACCCATTT+AGG | - | chr5_2:8483252-8483271 | None:intergenic | 50.0% | |
| TGGGTCATCCAACCAAGATC+TGG | - | chr5_2:8483276-8483295 | None:intergenic | 50.0% | |
| TCAGACTCAGACTCAGACTC+AGG | + | chr5_2:8483455-8483474 | Msa0754770:CDS | 50.0% | |
| ! | CTTCAACAACGGACTCGGAT+AGG | - | chr5_2:8483557-8483576 | None:intergenic | 50.0% |
| GCGTCGCACTTCTTCAACAA+CGG | - | chr5_2:8483568-8483587 | None:intergenic | 50.0% | |
| AAGGCTCTGTTACCAACACG+AGG | - | chr5_2:8483735-8483754 | None:intergenic | 50.0% | |
| !! | CGTGTTGGTAACAGAGCCTT+TGG | + | chr5_2:8483735-8483754 | Msa0754770:CDS | 50.0% |
| ! | TCAGCATCGGGCTTCAAGTA+AGG | - | chr5_2:8483975-8483994 | None:intergenic | 50.0% |
| ! | TGTAAGCGTTTCAGGTGGCG+GGG | - | chr5_2:8482943-8482962 | None:intergenic | 55.0% |
| ! | CTGTAAGCGTTTCAGGTGGC+GGG | - | chr5_2:8482944-8482963 | None:intergenic | 55.0% |
| ! | GCTGTAAGCGTTTCAGGTGG+CGG | - | chr5_2:8482945-8482964 | None:intergenic | 55.0% |
| GACGCTGTAAGCGTTTCAGG+TGG | - | chr5_2:8482948-8482967 | None:intergenic | 55.0% | |
| GCGTCTTCTTTCCAAGACGG+CGG | + | chr5_2:8482963-8482982 | Msa0754770:CDS | 55.0% | |
| TGGAGAATACTCCGCCGTCT+TGG | - | chr5_2:8482977-8482996 | None:intergenic | 55.0% | |
| TCATGGCAGCAACGACTGGA+AGG | + | chr5_2:8483029-8483048 | Msa0754770:CDS | 55.0% | |
| CATGGCAGCAACGACTGGAA+GGG | + | chr5_2:8483030-8483049 | Msa0754770:CDS | 55.0% | |
| ATGGCAGCAACGACTGGAAG+GGG | + | chr5_2:8483031-8483050 | Msa0754770:CDS | 55.0% | |
| ATCTAACAACCTCTCGCCGG+AGG | - | chr5_2:8483080-8483099 | None:intergenic | 55.0% | |
| GATGAGGTGGCACCAGATCT+TGG | + | chr5_2:8483261-8483280 | Msa0754770:CDS | 55.0% | |
| AGGTGGCACCAGATCTTGGT+TGG | + | chr5_2:8483265-8483284 | Msa0754770:CDS | 55.0% | |
| ! | GATGACCCAGCGTTCTAGCT+GGG | + | chr5_2:8483287-8483306 | Msa0754770:CDS | 55.0% |
| TCCAACCCAGCTAGAACGCT+GGG | - | chr5_2:8483295-8483314 | None:intergenic | 55.0% | |
| ATCCAACCCAGCTAGAACGC+TGG | - | chr5_2:8483296-8483315 | None:intergenic | 55.0% | |
| AGTCTGAGTCTGAGCGTCCT+CGG | - | chr5_2:8483448-8483467 | None:intergenic | 55.0% | |
| CAGACTCAGACTCAGGCACA+AGG | + | chr5_2:8483462-8483481 | Msa0754770:CDS | 55.0% | |
| GCCGAGGAAATTAGCACGTG+CGG | + | chr5_2:8483669-8483688 | Msa0754770:CDS | 55.0% | |
| CCCGCACGTGCTAATTTCCT+CGG | - | chr5_2:8483673-8483692 | None:intergenic | 55.0% | |
| CCGAGGAAATTAGCACGTGC+GGG | + | chr5_2:8483670-8483689 | Msa0754770:CDS | 55.0% | |
| ! | TCATTTGGCGGACCTCGTGT+TGG | + | chr5_2:8483720-8483739 | Msa0754770:CDS | 55.0% |
| !! | GACGTGATTACAAGGGTGCC+AGG | + | chr5_2:8483810-8483829 | Msa0754770:CDS | 55.0% |
| ! | TGTAAGCGTTTCAGGTGGCG+GGG | - | chr5_2:8482943-8482962 | None:intergenic | 55.0% |
| ! | CTGTAAGCGTTTCAGGTGGC+GGG | - | chr5_2:8482944-8482963 | None:intergenic | 55.0% |
| ! | GCTGTAAGCGTTTCAGGTGG+CGG | - | chr5_2:8482945-8482964 | None:intergenic | 55.0% |
| GACGCTGTAAGCGTTTCAGG+TGG | - | chr5_2:8482948-8482967 | None:intergenic | 55.0% | |
| GCGTCTTCTTTCCAAGACGG+CGG | + | chr5_2:8482963-8482982 | Msa0754770:CDS | 55.0% | |
| TGGAGAATACTCCGCCGTCT+TGG | - | chr5_2:8482977-8482996 | None:intergenic | 55.0% | |
| TCATGGCAGCAACGACTGGA+AGG | + | chr5_2:8483029-8483048 | Msa0754770:CDS | 55.0% | |
| CATGGCAGCAACGACTGGAA+GGG | + | chr5_2:8483030-8483049 | Msa0754770:CDS | 55.0% | |
| ATGGCAGCAACGACTGGAAG+GGG | + | chr5_2:8483031-8483050 | Msa0754770:CDS | 55.0% | |
| ATCTAACAACCTCTCGCCGG+AGG | - | chr5_2:8483080-8483099 | None:intergenic | 55.0% | |
| GATGAGGTGGCACCAGATCT+TGG | + | chr5_2:8483261-8483280 | Msa0754770:CDS | 55.0% | |
| AGGTGGCACCAGATCTTGGT+TGG | + | chr5_2:8483265-8483284 | Msa0754770:CDS | 55.0% | |
| ! | GATGACCCAGCGTTCTAGCT+GGG | + | chr5_2:8483287-8483306 | Msa0754770:CDS | 55.0% |
| TCCAACCCAGCTAGAACGCT+GGG | - | chr5_2:8483295-8483314 | None:intergenic | 55.0% | |
| ATCCAACCCAGCTAGAACGC+TGG | - | chr5_2:8483296-8483315 | None:intergenic | 55.0% | |
| AGTCTGAGTCTGAGCGTCCT+CGG | - | chr5_2:8483448-8483467 | None:intergenic | 55.0% | |
| CAGACTCAGACTCAGGCACA+AGG | + | chr5_2:8483462-8483481 | Msa0754770:CDS | 55.0% | |
| GCCGAGGAAATTAGCACGTG+CGG | + | chr5_2:8483669-8483688 | Msa0754770:CDS | 55.0% | |
| CCCGCACGTGCTAATTTCCT+CGG | - | chr5_2:8483673-8483692 | None:intergenic | 55.0% | |
| CCGAGGAAATTAGCACGTGC+GGG | + | chr5_2:8483670-8483689 | Msa0754770:CDS | 55.0% | |
| ! | TCATTTGGCGGACCTCGTGT+TGG | + | chr5_2:8483720-8483739 | Msa0754770:CDS | 55.0% |
| !! | GACGTGATTACAAGGGTGCC+AGG | + | chr5_2:8483810-8483829 | Msa0754770:CDS | 55.0% |
| !! | TAAGCGTTTCAGGTGGCGGG+GGG | - | chr5_2:8482941-8482960 | None:intergenic | 60.0% |
| ! | GTAAGCGTTTCAGGTGGCGG+GGG | - | chr5_2:8482942-8482961 | None:intergenic | 60.0% |
| CGCCGGAGGTTGTCATCCAA+GGG | - | chr5_2:8483066-8483085 | None:intergenic | 60.0% | |
| TCGCCGGAGGTTGTCATCCA+AGG | - | chr5_2:8483067-8483086 | None:intergenic | 60.0% | |
| GGATGACCCAGCGTTCTAGC+TGG | + | chr5_2:8483286-8483305 | Msa0754770:CDS | 60.0% | |
| ! | ACCCAGCGTTCTAGCTGGGT+TGG | + | chr5_2:8483291-8483310 | Msa0754770:CDS | 60.0% |
| GTCTGAGTCTGAGCGTCCTC+GGG | - | chr5_2:8483447-8483466 | None:intergenic | 60.0% | |
| ACCGTTACCGGCCATAGCCT+TGG | + | chr5_2:8483624-8483643 | Msa0754770:CDS | 60.0% | |
| GCCAAGGCTATGGCCGGTAA+CGG | - | chr5_2:8483628-8483647 | None:intergenic | 60.0% | |
| CTAGTGTCGCGCCAAGGCTA+TGG | - | chr5_2:8483638-8483657 | None:intergenic | 60.0% | |
| ! | ATAGGGCTAGTGTCGCGCCA+AGG | - | chr5_2:8483644-8483663 | None:intergenic | 60.0% |
| TGGCGCGACACTAGCCCTAT+TGG | + | chr5_2:8483644-8483663 | Msa0754770:CDS | 60.0% | |
| CGCGACACTAGCCCTATTGG+TGG | + | chr5_2:8483647-8483666 | Msa0754770:CDS | 60.0% | |
| ! | ACTAGCCCTATTGGTGGCCG+AGG | + | chr5_2:8483653-8483672 | Msa0754770:CDS | 60.0% |
| !! | TAAGCGTTTCAGGTGGCGGG+GGG | - | chr5_2:8482941-8482960 | None:intergenic | 60.0% |
| ! | GTAAGCGTTTCAGGTGGCGG+GGG | - | chr5_2:8482942-8482961 | None:intergenic | 60.0% |
| CGCCGGAGGTTGTCATCCAA+GGG | - | chr5_2:8483066-8483085 | None:intergenic | 60.0% | |
| TCGCCGGAGGTTGTCATCCA+AGG | - | chr5_2:8483067-8483086 | None:intergenic | 60.0% | |
| GGATGACCCAGCGTTCTAGC+TGG | + | chr5_2:8483286-8483305 | Msa0754770:CDS | 60.0% | |
| ! | ACCCAGCGTTCTAGCTGGGT+TGG | + | chr5_2:8483291-8483310 | Msa0754770:CDS | 60.0% |
| GTCTGAGTCTGAGCGTCCTC+GGG | - | chr5_2:8483447-8483466 | None:intergenic | 60.0% | |
| ACCGTTACCGGCCATAGCCT+TGG | + | chr5_2:8483624-8483643 | Msa0754770:CDS | 60.0% | |
| GCCAAGGCTATGGCCGGTAA+CGG | - | chr5_2:8483628-8483647 | None:intergenic | 60.0% | |
| CTAGTGTCGCGCCAAGGCTA+TGG | - | chr5_2:8483638-8483657 | None:intergenic | 60.0% | |
| ! | ATAGGGCTAGTGTCGCGCCA+AGG | - | chr5_2:8483644-8483663 | None:intergenic | 60.0% |
| TGGCGCGACACTAGCCCTAT+TGG | + | chr5_2:8483644-8483663 | Msa0754770:CDS | 60.0% | |
| CGCGACACTAGCCCTATTGG+TGG | + | chr5_2:8483647-8483666 | Msa0754770:CDS | 60.0% | |
| ! | ACTAGCCCTATTGGTGGCCG+AGG | + | chr5_2:8483653-8483672 | Msa0754770:CDS | 60.0% |
| GGATGACAACCTCCGGCGAG+AGG | + | chr5_2:8483068-8483087 | Msa0754770:CDS | 65.0% | |
| TGTCGCGCCAAGGCTATGGC+CGG | - | chr5_2:8483634-8483653 | None:intergenic | 65.0% | |
| ACAGCCACGGGTGGCACGTT+TGG | - | chr5_2:8483696-8483715 | None:intergenic | 65.0% | |
| GGATGACAACCTCCGGCGAG+AGG | + | chr5_2:8483068-8483087 | Msa0754770:CDS | 65.0% | |
| TGTCGCGCCAAGGCTATGGC+CGG | - | chr5_2:8483634-8483653 | None:intergenic | 65.0% | |
| ACAGCCACGGGTGGCACGTT+TGG | - | chr5_2:8483696-8483715 | None:intergenic | 65.0% | |
| CGGGCCAAACGTGCCACCCG+TGG | + | chr5_2:8483689-8483708 | Msa0754770:CDS | 75.0% | |
| CGGGCCAAACGTGCCACCCG+TGG | + | chr5_2:8483689-8483708 | Msa0754770:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 8482610 | 8484256 | 8482610 | ID=Msa0754770;Name=Msa0754770 |
| chr5_2 | mRNA | 8482610 | 8484256 | 8482610 | ID=Msa0754770-mRNA-1;Parent=Msa0754770;Name=Msa0754770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|548 |
| chr5_2 | exon | 8482610 | 8484256 | 8482610 | ID=Msa0754770-mRNA-1:exon:3808;Parent=Msa0754770-mRNA-1 |
| chr5_2 | CDS | 8482610 | 8484256 | 8482610 | ID=Msa0754770-mRNA-1:cds;Parent=Msa0754770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
