AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0841700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841700 MtrunA17_Chr5g0411271 89.793 725 60 5 1 721 1 715 0.0 1229
Msa0841700 MtrunA17_Chr6g0458431 70.826 569 133 9 146 705 87 631 0.0 742
Msa0841700 MtrunA17_Chr6g0458441 58.104 728 193 14 18 705 1 656 0.0 716
Msa0841700 MtrunA17_Chr6g0458421 67.430 568 130 10 153 712 27 547 0.0 708
Msa0841700 MtrunA17_Chr8g0366721 56.329 316 122 4 152 466 209 509 5.25e-110 345
Msa0841700 MtrunA17_Chr8g0365831 47.319 317 163 4 152 466 161 475 1.62e-90 293
Msa0841700 MtrunA17_Chr4g0074041 42.405 316 159 6 153 455 90 395 3.67e-73 254
Msa0841700 MtrunA17_Chr4g0062561 39.062 320 174 9 141 456 239 541 2.63e-55 204
Msa0841700 MtrunA17_Chr4g0062561 38.356 292 157 8 173 456 577 853 2.24e-47 181
Msa0841700 MtrunA17_Chr4g0062491 35.897 312 175 7 166 463 1 301 3.44e-54 189
Msa0841700 MtrunA17_Chr1g0150541 35.016 317 179 9 155 455 181 486 1.87e-49 186
Msa0841700 MtrunA17_Chr3g0133061 34.286 315 181 9 156 455 585 888 2.07e-47 181
Msa0841700 MtrunA17_Chr5g0412381 34.713 314 181 9 156 456 425 727 2.56e-47 181
Msa0841700 MtrunA17_Chr2g0312901 33.016 315 187 7 156 455 23 328 5.79e-47 177
Msa0841700 MtrunA17_Chr2g0313171 35.759 316 176 9 156 455 465 769 5.83e-47 179
Msa0841700 MtrunA17_Chr5g0427301 33.968 315 181 10 156 455 543 845 1.61e-44 172
Msa0841700 MtrunA17_Chr1g0149991 31.250 352 183 11 156 456 182 525 9.60e-39 151
Msa0841700 MtrunA17_Chr8g0382161 29.971 347 192 8 156 457 24 364 5.28e-35 137
Msa0841700 MtrunA17_Chr3g0123951 30.172 348 182 11 156 453 24 360 1.63e-34 135
Msa0841700 MtrunA17_Chr4g0064671 28.000 250 121 8 258 456 5 246 1.96e-26 108
Msa0841700 MtrunA17_Chr1g0148321 29.153 295 176 9 155 432 107 385 5.81e-24 108
Msa0841700 MtrunA17_Chr3g0138791 27.665 394 239 17 60 432 17 385 8.28e-23 104
Msa0841700 MtrunA17_Chr4g0020741 26.667 360 193 12 156 455 183 531 1.91e-22 102
Msa0841700 MtrunA17_Chr5g0439971 26.910 301 197 10 142 431 195 483 2.23e-21 99.8
Msa0841700 MtrunA17_Chr3g0119031 27.333 300 195 11 142 430 190 477 3.36e-21 99.4
Msa0841700 MtrunA17_Chr1g0170261 26.923 286 192 11 155 430 201 479 4.13e-20 95.9
Msa0841700 MtrunA17_Chr2g0322211 33.766 154 90 5 305 455 717 861 9.58e-15 78.2
Msa0841700 MtrunA17_Chr1g0189101 35.443 158 89 6 305 458 765 913 1.10e-14 78.2
Msa0841700 MtrunA17_Chr3g0121291 35.938 128 73 3 336 455 943 1069 1.96e-14 77.4
Msa0841700 MtrunA17_Chr3g0121291 30.457 197 91 6 136 300 202 384 2.27e-12 70.9
Msa0841700 MtrunA17_Chr7g0255591 32.911 158 94 6 305 458 754 903 4.38e-14 76.3
Msa0841700 MtrunA17_Chr7g0267641 32.468 154 93 5 305 455 791 936 3.85e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841700 AT4G17895.1 52.078 361 155 5 135 486 155 506 9.14e-114 359
Msa0841700 AT5G46740.1 38.023 597 303 15 147 696 155 731 1.23e-102 331
Msa0841700 AT5G46740.2 36.852 540 276 14 202 696 3 522 1.55e-82 271
Msa0841700 AT5G57990.1 42.857 315 158 6 153 455 105 409 1.43e-75 261
Msa0841700 AT4G31670.1 35.331 317 178 9 155 455 168 473 9.57e-49 182
Msa0841700 AT5G65450.1 35.144 313 180 8 156 455 330 632 1.43e-48 183
Msa0841700 AT5G65450.2 35.144 313 180 8 156 455 349 651 2.69e-48 182
Msa0841700 AT2G24640.1 32.603 365 212 11 107 455 133 479 2.05e-47 179
Msa0841700 AT2G24640.2 34.385 317 181 9 155 455 4 309 6.34e-47 174
Msa0841700 AT3G14400.1 34.483 319 181 8 156 455 25 334 1.29e-46 176
Msa0841700 AT1G17110.2 33.043 345 193 11 130 455 422 747 7.41e-44 170
Msa0841700 AT1G17110.3 33.043 345 193 11 130 455 418 743 7.53e-44 170
Msa0841700 AT1G17110.1 33.043 345 193 11 130 455 418 743 7.53e-44 170
Msa0841700 AT4G24560.1 32.595 316 185 11 156 455 543 846 1.04e-39 158
Msa0841700 AT2G22310.1 31.429 350 184 12 156 458 24 364 1.67e-33 132
Msa0841700 AT4G39910.1 29.944 354 187 10 156 457 24 368 7.10e-33 131
Msa0841700 AT5G10790.2 28.571 364 187 14 156 456 49 402 2.87e-28 119
Msa0841700 AT2G22310.3 30.473 338 179 12 168 458 4 332 3.12e-27 114
Msa0841700 AT5G10790.1 28.571 364 187 14 156 456 178 531 4.50e-27 117
Msa0841700 AT2G22310.2 31.579 285 146 9 217 458 49 327 7.45e-27 112
Msa0841700 AT3G11910.4 27.907 301 194 11 142 431 188 476 3.07e-23 106
Msa0841700 AT3G11910.2 27.907 301 194 11 142 431 188 476 3.07e-23 106
Msa0841700 AT3G11910.3 27.907 301 194 11 142 431 189 477 3.10e-23 106
Msa0841700 AT3G11910.1 27.907 301 194 11 142 431 189 477 3.10e-23 106
Msa0841700 AT4G30890.1 25.138 362 200 9 156 455 198 550 4.88e-23 104
Msa0841700 AT4G30890.2 25.138 362 200 9 156 455 198 550 4.88e-23 104
Msa0841700 AT4G30890.3 25.138 362 200 9 156 455 198 550 4.88e-23 104
Msa0841700 AT5G06600.1 27.907 301 194 11 142 431 190 478 1.79e-22 103
Msa0841700 AT5G06600.3 28.000 300 193 11 142 430 190 477 1.86e-22 103
Msa0841700 AT5G06600.2 27.907 301 194 11 142 431 189 477 1.89e-22 103
Msa0841700 AT3G49600.2 27.148 291 186 10 155 432 106 383 3.28e-20 96.7
Msa0841700 AT3G49600.1 27.148 291 186 10 155 432 106 383 3.28e-20 96.7
Msa0841700 AT3G49600.3 27.148 291 186 10 155 432 106 383 3.47e-20 96.7
Msa0841700 AT5G22030.1 34.416 154 90 5 305 455 723 868 5.98e-16 82.8
Msa0841700 AT5G22030.2 34.416 154 90 5 305 455 765 910 6.59e-16 82.4
Msa0841700 AT2G40930.1 33.333 156 92 6 305 456 769 916 1.00e-14 79.0
Msa0841700 AT2G40930.2 33.333 156 92 6 305 456 769 916 1.00e-14 79.0
Msa0841700 AT4G10590.4 37.419 155 84 6 305 455 748 893 1.18e-14 78.6
Msa0841700 AT4G10590.3 37.419 155 84 6 305 455 748 893 1.18e-14 78.6
Msa0841700 AT4G10590.1 37.419 155 84 6 305 455 748 893 1.18e-14 78.6
Msa0841700 AT4G10590.2 37.419 155 84 6 305 455 748 893 1.18e-14 78.6
Msa0841700 AT4G10570.1 36.774 155 85 7 305 455 749 894 5.25e-14 76.6
Msa0841700 AT4G10570.1 28.910 211 115 5 138 313 285 495 1.85e-11 68.2
Msa0841700 AT1G04860.1 33.974 156 86 4 156 298 232 383 7.23e-14 75.9
Msa0841700 AT1G32850.1 35.484 155 87 7 305 455 734 879 1.23e-13 75.1
Msa0841700 AT2G32780.1 29.341 167 87 6 156 300 203 360 7.57e-11 66.2

Find 167 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATAAACTTCATCCTTTA+AGG 0.041402 5_4:+18179588 None:intergenic
CTGTCTTAAACCTCTTTAAA+TGG 0.207305 5_4:+18178015 None:intergenic
AGTTAATTCTACTCGGATTT+TGG 0.210552 5_4:-18179686 Msa0841700:CDS
TGCTCAATTGGGTATTTCTT+TGG 0.217652 5_4:-18179896 Msa0841700:CDS
AAACAGTCCTTGCAGTTTAC+TGG 0.245751 5_4:-18178730 Msa0841700:CDS
AGACTTCTCAGAAAATTCTT+TGG 0.249608 5_4:+18177180 None:intergenic
ATTGAGAGAAAGAGAAGTTT+AGG 0.251577 5_4:+18180053 None:intergenic
ATGGTGATTTGTCAGATATT+TGG 0.280681 5_4:-18179747 Msa0841700:CDS
AGTTTCTGAGCCTGAGGATA+TGG 0.283386 5_4:-18179830 Msa0841700:CDS
ATTGAATAGTCTTTGACTTT+AGG 0.290779 5_4:-18176462 Msa0841700:exon
TGTCATGACTACATACAATT+TGG 0.304833 5_4:+18176362 None:intergenic
TACAATTTGGCTAGAGGTAT+TGG 0.311108 5_4:+18176375 None:intergenic
AATATTGTGAAGAAAGTCTT+TGG 0.320644 5_4:-18178372 Msa0841700:CDS
AACCGTAGATCCTGCTCAAT+TGG 0.346549 5_4:-18179908 Msa0841700:CDS
AGTCTTTGACTTTAGGCATT+TGG 0.346739 5_4:-18176455 Msa0841700:three_prime_UTR
TATGATTCTGATTCTAAAGT+TGG 0.348463 5_4:-18179571 Msa0841700:CDS
TAGGCATTTGGCTGTGTACT+TGG 0.354596 5_4:-18176443 Msa0841700:three_prime_UTR
GTATCTGTTCTCATGCATAA+TGG 0.357638 5_4:+18176325 None:intergenic
TTGGGAATTTCAGGTCATAA+TGG 0.374228 5_4:-18178787 Msa0841700:intron
AAAATCCGAGTAGAATTAAC+TGG 0.376969 5_4:+18179688 None:intergenic
GTTCTCATGCATAATGGAAC+AGG 0.386413 5_4:+18176331 None:intergenic
TCAAATGATCGCGTGAGATC+TGG 0.390392 5_4:+18176746 None:intergenic
TGGGAATTTCAGGTCATAAT+GGG 0.391890 5_4:-18178786 Msa0841700:intron
TGCCGCAAACAAGTTCCTGC+TGG 0.392129 5_4:-18177094 Msa0841700:CDS
GAAAGTCTTTGGAGGCAGTT+TGG 0.392748 5_4:-18178361 Msa0841700:CDS
TATGCAGTTGTTGTGCATAA+TGG 0.393951 5_4:-18177803 Msa0841700:CDS
GGCAGCTACCCTGTGGCAGC+TGG 0.397430 5_4:-18176493 Msa0841700:CDS
AGCAGTGCTCGCAAGAAATC+AGG 0.399732 5_4:-18176529 Msa0841700:CDS
CTGCAATGAAGAAGTGTCTA+TGG 0.405794 5_4:-18178081 Msa0841700:CDS
TTCTGATTTGATGGCCCAGC+AGG 0.410077 5_4:+18177079 None:intergenic
TCCGGTGGATACCAAGCTTC+CGG 0.412997 5_4:+18179655 None:intergenic
AAAACCAAGGTGTGCCTTGT+CGG 0.413813 5_4:+18177347 None:intergenic
GTGAATTATGCCAGCCCGAC+TGG 0.419613 5_4:-18177007 Msa0841700:CDS
CGAGTAGAATTAACTGGAAC+CGG 0.424615 5_4:+18179694 None:intergenic
ATGATTCTGATTCTAAAGTT+GGG 0.433621 5_4:-18179570 Msa0841700:CDS
TACAACCAGTTCTCATCATC+AGG 0.433784 5_4:+18179625 None:intergenic
GACGTTTATGTTGATGTTGT+CGG 0.434418 5_4:-18179853 Msa0841700:CDS
TGGCTGTGCCGCCGGAAGCT+TGG 0.438381 5_4:-18179666 Msa0841700:CDS
TCCTCTTACTCACCATCATT+AGG 0.442960 5_4:+18178937 None:intergenic
AAATAGAAAATGATTTATCC+TGG 0.443696 5_4:+18177239 None:intergenic
CTTTGCAATGCCAGTCGGGC+TGG 0.444918 5_4:+18176997 None:intergenic
CGGTTCCAGTTAATTCTACT+CGG 0.445652 5_4:-18179693 Msa0841700:CDS
GATTTGTCAGATATTTGGCC+GGG 0.446194 5_4:-18179742 Msa0841700:CDS
GCTGCTGTCTTTGTCCGACT+TGG 0.449405 5_4:+18176549 None:intergenic
AGATATTTGGCCGGGGCCGA+TGG 0.453647 5_4:-18179734 Msa0841700:CDS
AAATGGAATGCAGCAATTGA+AGG 0.458769 5_4:+18178032 None:intergenic
CAGGCTTTGCAATGCCAGTC+GGG 0.460520 5_4:+18176993 None:intergenic
AAGCTGCCAGGGCATATGTT+AGG 0.462405 5_4:-18176654 Msa0841700:CDS
GGTAATTATTCAGGTAACTA+AGG 0.467491 5_4:-18177419 Msa0841700:intron
TGAAGGGACTGTGCTGTCTC+AGG 0.467824 5_4:-18177392 Msa0841700:CDS
TATCAATTTCCCACTGGAGT+TGG 0.469397 5_4:-18177961 Msa0841700:CDS
AATGGAACTTCATCTGACTC+TGG 0.470300 5_4:-18177785 Msa0841700:CDS
AAACCAAGGTGTGCCTTGTC+GGG 0.471326 5_4:+18177348 None:intergenic
GTTTCTGAGCCTGAGGATAT+GGG 0.471454 5_4:-18179829 Msa0841700:CDS
CATAATTCACAGGTAGCACT+TGG 0.473153 5_4:+18177020 None:intergenic
ACCGTAGATCCTGCTCAATT+GGG 0.475265 5_4:-18179907 Msa0841700:CDS
AGCTGCCATTCTCCTAATGA+TGG 0.476167 5_4:-18178949 Msa0841700:intron
GCAAAAGTTGGATGATTCAA+TGG 0.479441 5_4:-18177723 Msa0841700:CDS
AATATTGAAAAGAGTGGGGC+TGG 0.480181 5_4:-18177208 Msa0841700:CDS
TTGCTGCATTCCATTTAAAG+AGG 0.480468 5_4:-18178025 Msa0841700:CDS
AATGAAAATATTGAAAAGAG+TGG 0.488221 5_4:-18177214 Msa0841700:CDS
ATGAAAATATTGAAAAGAGT+GGG 0.488375 5_4:-18177213 Msa0841700:CDS
TTTAGACATCACTGATGGCC+AGG 0.488436 5_4:-18177257 Msa0841700:CDS
GAAGAAATGAAATTCTTGGT+TGG 0.491050 5_4:+18180081 None:intergenic
ATCTCGCTGCGGAACATCAC+CGG 0.496487 5_4:+18179771 None:intergenic
CAAAAGAAGACCCTCGACTA+GGG 0.498254 5_4:+18178972 None:intergenic
TCTAGACTTAGGTCAATCAA+TGG 0.498501 5_4:+18178188 None:intergenic
GCCCAGCAGGAACTTGTTTG+CGG 0.500874 5_4:+18177092 None:intergenic
AGATACTATTTCAAGTGCAT+TGG 0.502024 5_4:-18178153 Msa0841700:CDS
ATCCTCAAAATAAAGCTGCC+AGG 0.504847 5_4:-18176666 Msa0841700:CDS
ACAGCAAGATCCATCGGCCC+CGG 0.506375 5_4:+18179724 None:intergenic
GATGTTCCGCAGCGAGATCA+TGG 0.509643 5_4:-18179766 Msa0841700:CDS
AAATCTTCATTTGAATGGAT+CGG 0.510400 5_4:-18177056 Msa0841700:CDS
CCGACTGGCATTGCAAAGCC+TGG 0.513078 5_4:-18176992 Msa0841700:CDS
ATCATCATCAGGCAAGTCTT+CGG 0.514591 5_4:-18176692 Msa0841700:CDS
ATGCTCCTGATGATGAGAAC+TGG 0.515150 5_4:-18179630 Msa0841700:CDS
AGTGGTAAAAGATCATCATC+AGG 0.517890 5_4:-18176703 Msa0841700:CDS
TATCTCCCCTGTGGTATTCG+TGG 0.519071 5_4:-18178701 Msa0841700:CDS
TCATCATCAGGAGCATAATC+CGG 0.519460 5_4:+18179637 None:intergenic
CCAGGCTTTGCAATGCCAGT+CGG 0.519525 5_4:+18176992 None:intergenic
AAAGCATGTGTTACCAAGGT+TGG 0.521069 5_4:+18179032 None:intergenic
TGTGAAACTCCAGCTGCCAC+AGG 0.523773 5_4:+18176484 None:intergenic
ACTCACCATCATTAGGAGAA+TGG 0.528124 5_4:+18178944 None:intergenic
GCCGCAAACAAGTTCCTGCT+GGG 0.528262 5_4:-18177093 Msa0841700:CDS
TGGAGGCAGTTTGGTTAGCA+AGG 0.528538 5_4:-18178352 Msa0841700:intron
TGAGTTTATGCAGTGTGCAT+TGG 0.528922 5_4:-18178433 Msa0841700:CDS
CAATCACCTGGAGTCTGAGA+AGG 0.530275 5_4:+18176857 None:intergenic
TTAGGAATATGCCTGGTTCA+AGG 0.531245 5_4:-18176636 Msa0841700:CDS
GTCGGGCTGGCATAATTCAC+AGG 0.532843 5_4:+18177010 None:intergenic
TCAAAAGAAGACCCTCGACT+AGG 0.540121 5_4:+18178971 None:intergenic
CTGGCATTGCAAAGCCTGGT+GGG 0.544914 5_4:-18176988 Msa0841700:CDS
AATCACCTGGAGTCTGAGAA+GGG 0.545095 5_4:+18176858 None:intergenic
ACCCAATTGAGCAGGATCTA+CGG 0.547215 5_4:+18179906 None:intergenic
GGTAGCTGCCGACGGAAGCA+TGG 0.550788 5_4:+18176506 None:intergenic
TGATTTGTCAGATATTTGGC+CGG 0.551375 5_4:-18179743 Msa0841700:CDS
TTGGTTAAGCCCATATCCTC+AGG 0.551945 5_4:+18179820 None:intergenic
GCCGGAAGCTTGGTATCCAC+CGG 0.552170 5_4:-18179656 Msa0841700:CDS
CAGGTAACTAAGGTATCTGA+AGG 0.552413 5_4:-18177409 Msa0841700:CDS
TATGGAGAAGCAGCTTATGT+TGG 0.552768 5_4:-18178063 Msa0841700:CDS
AGTGATGTCTAAAACAGACT+TGG 0.553424 5_4:+18177267 None:intergenic
AAAACGCTTACAATCGTCAA+TGG 0.553452 5_4:+18179547 None:intergenic
GGAGCTGGGCTTGCCAACCT+TGG 0.555047 5_4:-18179045 Msa0841700:CDS
ATGGAACTTCATCTGACTCT+GGG 0.557189 5_4:-18177784 Msa0841700:CDS
TCCAGACACATGGCAAAAGT+TGG 0.557241 5_4:-18177735 Msa0841700:CDS
ACAGAGAAGCAAGGAAGTAG+TGG 0.558974 5_4:-18176721 Msa0841700:CDS
ACCTGGAGTCTGAGAAGGGG+GGG 0.559134 5_4:+18176862 None:intergenic
TGCCACAGGGTAGCTGCCGA+CGG 0.563195 5_4:+18176498 None:intergenic
GCATACTGTGCCCCTAGTCG+AGG 0.564517 5_4:-18178983 Msa0841700:CDS
AAATTATCCACGAATACCAC+AGG 0.565734 5_4:+18178694 None:intergenic
TCAGCATATGAACTCCCACC+AGG 0.567820 5_4:+18176974 None:intergenic
GCAGGAACTTGTTTGCGGCA+AGG 0.568113 5_4:+18177097 None:intergenic
TCACCTGGAGTCTGAGAAGG+GGG 0.569077 5_4:+18176860 None:intergenic
TCCTCAAAATAAAGCTGCCA+GGG 0.569220 5_4:-18176665 Msa0841700:CDS
AAAGAAATACCCAATTGAGC+AGG 0.570044 5_4:+18179898 None:intergenic
ACAAATAGAAATCGCGGACA+AGG 0.573534 5_4:-18176304 Msa0841700:three_prime_UTR
CACAGACATAAACTCATCGT+TGG 0.578678 5_4:+18179801 None:intergenic
CATATTCCTAACATATGCCC+TGG 0.580915 5_4:+18176648 None:intergenic
GCATATGTTAGGAATATGCC+TGG 0.584399 5_4:-18176643 Msa0841700:CDS
CAAGCATATCAATTTCCCAC+TGG 0.585157 5_4:-18177967 Msa0841700:CDS
ATTGTGAAGAAAGTCTTTGG+AGG 0.585535 5_4:-18178369 Msa0841700:CDS
TGCATTGGAGTCTTTCACAA+TGG 0.585606 5_4:-18178138 Msa0841700:CDS
AATGCACCTCTCCTTGAACC+AGG 0.588351 5_4:+18176625 None:intergenic
TTCGCACTGCTCCAGACACA+TGG 0.588758 5_4:-18177745 Msa0841700:CDS
GCATACACAGCAAGATCCAT+CGG 0.590600 5_4:+18179718 None:intergenic
TGAAAATATTGAAAAGAGTG+GGG 0.594431 5_4:-18177212 Msa0841700:CDS
GGATCTTGCTGTGTATGCTC+CGG 0.600782 5_4:-18179713 Msa0841700:CDS
ATTTGTCAGATATTTGGCCG+GGG 0.604300 5_4:-18179741 Msa0841700:CDS
GTGATGTCTAAAACAGACTT+GGG 0.604740 5_4:+18177268 None:intergenic
ATGCCCGACAAGGCACACCT+TGG 0.606806 5_4:-18177351 Msa0841700:CDS
TGATGCTAAGATTAAATGTG+AGG 0.612633 5_4:-18178105 Msa0841700:CDS
ATCACCTGGAGTCTGAGAAG+GGG 0.616978 5_4:+18176859 None:intergenic
TGAGAAAGCATGTGTTACCA+AGG 0.617381 5_4:+18179028 None:intergenic
GGTGAAAATACCTTTATCTG+TGG 0.622911 5_4:-18176412 Msa0841700:three_prime_UTR
AACTCTTCCAGTAAACTGCA+AGG 0.624220 5_4:+18178723 None:intergenic
AAAGACTGATTCATCCAAGT+CGG 0.626726 5_4:-18176563 Msa0841700:CDS
GCTCATTAGTGTCAGAAGAG+TGG 0.628120 5_4:+18178210 None:intergenic
AAATCAGGCCATGCTTCCGT+CGG 0.629660 5_4:-18176514 Msa0841700:CDS
GTGAAACTCCAGCTGCCACA+GGG 0.630296 5_4:+18176485 None:intergenic
ATCCTACTCAGATTCAAGCA+TGG 0.632686 5_4:+18177301 None:intergenic
CATACTGTGCCCCTAGTCGA+GGG 0.636860 5_4:-18178982 Msa0841700:CDS
AATATGCCTGGTTCAAGGAG+AGG 0.638632 5_4:-18176631 Msa0841700:CDS
GGTTGCAAATCCAACTCCAG+TGG 0.642634 5_4:+18177951 None:intergenic
TTCCATGCTTGAATCTGAGT+AGG 0.644297 5_4:-18177303 Msa0841700:CDS
ATAATTCACAGGTAGCACTT+GGG 0.648379 5_4:+18177021 None:intergenic
TGTCGGAGTTTCTGAGCCTG+AGG 0.652877 5_4:-18179836 Msa0841700:CDS
ACTACATACAATTTGGCTAG+AGG 0.656761 5_4:+18176369 None:intergenic
AAAAGAAGACCCTCGACTAG+GGG 0.658717 5_4:+18178973 None:intergenic
TTCTCATGCATAATGGAACA+GGG 0.661403 5_4:+18176332 None:intergenic
ACAGATACAAATAGAAATCG+CGG 0.661812 5_4:-18176310 Msa0841700:three_prime_UTR
TTCCGTCGGCAGCTACCCTG+TGG 0.662854 5_4:-18176500 Msa0841700:CDS
ACTGGCATTGCAAAGCCTGG+TGG 0.663624 5_4:-18176989 Msa0841700:CDS
GTTGCAAATCCAACTCCAGT+GGG 0.671853 5_4:+18177952 None:intergenic
AGGTAACTAAGGTATCTGAA+GGG 0.674479 5_4:-18177408 Msa0841700:CDS
TGTTGTTCTTGTTCACCACG+TGG 0.675934 5_4:+18179976 None:intergenic
CACCTGGAGTCTGAGAAGGG+GGG 0.678451 5_4:+18176861 None:intergenic
AGGACTGTTTCATCTGATAG+CGG 0.680625 5_4:+18178743 None:intergenic
TCCGCAAAACTTGAAAACCA+AGG 0.687758 5_4:+18177334 None:intergenic
TCATCAGGAGCATAATCCGG+TGG 0.690832 5_4:+18179640 None:intergenic
GATGCTAAGATTAAATGTGA+GGG 0.695012 5_4:-18178104 Msa0841700:CDS
GGTGGATACCAAGCTTCCGG+CGG 0.695616 5_4:+18179658 None:intergenic
TTTATGTCTGTGATGTACAC+CGG 0.696550 5_4:-18179790 Msa0841700:CDS
TGGAAGAGTTATCTCCCCTG+TGG 0.704661 5_4:-18178710 Msa0841700:CDS
AATTATCCACGAATACCACA+GGG 0.705529 5_4:+18178695 None:intergenic
CATTTGAAGACAGAGAAGCA+AGG 0.707732 5_4:-18176730 Msa0841700:CDS
AAATCACCATGATCTCGCTG+CGG 0.737924 5_4:+18179760 None:intergenic
TCTGATTCAAATTCACCACG+TGG 0.785823 5_4:-18179991 Msa0841700:CDS
ATTATCCACGAATACCACAG+GGG 0.824419 5_4:+18178696 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTGATTTAAATGTATA+TGG - chr5_4:18177444-18177463 Msa0841700:intron 15.0%
!! TAGAACCTTTAATTAATATA+AGG - chr5_4:18177808-18177827 Msa0841700:CDS 15.0%
!! ACTAACCTTATATTAATTAA+AGG + chr5_4:18177816-18177835 None:intergenic 15.0%
!!! TTTTGAAGAAATGAAATTCT+TGG + chr5_4:18176279-18176298 None:intergenic 20.0%
!!! CATTGAAATTTTGAAAGTTA+GGG + chr5_4:18176342-18176361 None:intergenic 20.0%
!!! ACATTGAAATTTTGAAAGTT+AGG + chr5_4:18176343-18176362 None:intergenic 20.0%
!! GCACAAACAATTAATATTAA+AGG + chr5_4:18177231-18177250 None:intergenic 20.0%
!!! TTTTCATTCAAAATAGTGTA+AGG + chr5_4:18178426-18178445 None:intergenic 20.0%
!! ACATGTTTAATGATAAAAGT+TGG - chr5_4:18178706-18178725 Msa0841700:CDS 20.0%
!! TTTATTTAACACGTAATATC+TGG - chr5_4:18178913-18178932 Msa0841700:intron 20.0%
!! AAATAGAAAATGATTTATCC+TGG + chr5_4:18179117-18179136 None:intergenic 20.0%
!! AATGAAAATATTGAAAAGAG+TGG - chr5_4:18179139-18179158 Msa0841700:intron 20.0%
!! ATGAAAATATTGAAAAGAGT+GGG - chr5_4:18179140-18179159 Msa0841700:intron 20.0%
!!! TGATTTTAAGGAATCCTTAA+AGG - chr5_4:18176751-18176770 Msa0841700:CDS 25.0%
! ATCATAAACTTCATCCTTTA+AGG + chr5_4:18176768-18176787 None:intergenic 25.0%
!!! TATGATTCTGATTCTAAAGT+TGG - chr5_4:18176782-18176801 Msa0841700:intron 25.0%
!!! ATGATTCTGATTCTAAAGTT+GGG - chr5_4:18176783-18176802 Msa0841700:intron 25.0%
! ATTTAGATCAAATATGTGTC+TGG + chr5_4:18177055-18177074 None:intergenic 25.0%
!! TTAATATTAAAGGTGTGTCT+GGG + chr5_4:18177221-18177240 None:intergenic 25.0%
!! ATTAATATTAAAGGTGTGTC+TGG + chr5_4:18177222-18177241 None:intergenic 25.0%
! ATTAATTGTTTGTGCTACAT+AGG - chr5_4:18177236-18177255 Msa0841700:CDS 25.0%
!!! AAGATTTTGACCTTTAGATT+GGG - chr5_4:18177548-18177567 Msa0841700:intron 25.0%
! TATCCTTAATACCATATTCA+TGG - chr5_4:18177688-18177707 Msa0841700:intron 25.0%
! TTTCCATGAATATGGTATTA+AGG + chr5_4:18177694-18177713 None:intergenic 25.0%
!! TTGCATATCTTTTCAATGAA+AGG - chr5_4:18177719-18177738 Msa0841700:CDS 25.0%
! TAGAATTGTCTGTCATTAAT+TGG - chr5_4:18177745-18177764 Msa0841700:CDS 25.0%
! AGTAGTGAGTGTTATATTAT+TGG - chr5_4:18177774-18177793 Msa0841700:CDS 25.0%
!! TTAAAGGTTCTATATTTTGC+AGG + chr5_4:18177800-18177819 None:intergenic 25.0%
!!! AGGTTAGTTTCTTTTACTTT+TGG - chr5_4:18177828-18177847 Msa0841700:intron 25.0%
!!! TTAGTTTCTTTTACTTTTGG+TGG - chr5_4:18177831-18177850 Msa0841700:intron 25.0%
!!! GACATGTTTTTCAAATTTTG+AGG - chr5_4:18177953-18177972 Msa0841700:CDS 25.0%
!!! ATGTTTTTCAAATTTTGAGG+AGG - chr5_4:18177956-18177975 Msa0841700:CDS 25.0%
! AATATTGTGAAGAAAGTCTT+TGG - chr5_4:18177981-18178000 Msa0841700:CDS 25.0%
! GAAGCTGAAAAATAAATACA+AGG + chr5_4:18178107-18178126 None:intergenic 25.0%
!!! CATTTTCTATTTCTAGACTT+AGG + chr5_4:18178179-18178198 None:intergenic 25.0%
! TCAGTATAAAGAATTCACAA+GGG + chr5_4:18178489-18178508 None:intergenic 25.0%
! AGTTTGCAAAAACAGTAAAA+TGG + chr5_4:18178814-18178833 None:intergenic 25.0%
!! TGTTTTCTTTGCATATAGTT+AGG - chr5_4:18178850-18178869 Msa0841700:intron 25.0%
!! GTTTTCTTTGCATATAGTTA+GGG - chr5_4:18178851-18178870 Msa0841700:intron 25.0%
! GGCTTATTTAATAATTGCAT+TGG - chr5_4:18178872-18178891 Msa0841700:intron 25.0%
! GTAATATCTGGTAATTATTC+AGG - chr5_4:18178925-18178944 Msa0841700:intron 25.0%
! TGAAAATATTGAAAAGAGTG+GGG - chr5_4:18179141-18179160 Msa0841700:intron 25.0%
!! TCAATAACATCATCATTTTC+AGG + chr5_4:18179229-18179248 None:intergenic 25.0%
!!! TGAAGATTTTTCTGATTTGA+TGG + chr5_4:18179286-18179305 None:intergenic 25.0%
! CAGAAAAATCTTCATTTGAA+TGG - chr5_4:18179292-18179311 Msa0841700:intron 25.0%
! AAATCTTCATTTGAATGGAT+CGG - chr5_4:18179297-18179316 Msa0841700:intron 25.0%
!! AAAAAGTATATTCAATCACC+TGG + chr5_4:18179511-18179530 None:intergenic 25.0%
!!! GGTGATTGAATATACTTTTT+TGG - chr5_4:18179511-18179530 Msa0841700:intron 25.0%
!!! TCTTTTTTCTCTTGTTTTCT+GGG + chr5_4:18179775-18179794 None:intergenic 25.0%
!! ATTGAATAGTCTTTGACTTT+AGG - chr5_4:18179891-18179910 Msa0841700:CDS 25.0%
GAAGAAATGAAATTCTTGGT+TGG + chr5_4:18176275-18176294 None:intergenic 30.0%
ATTGAGAGAAAGAGAAGTTT+AGG + chr5_4:18176303-18176322 None:intergenic 30.0%
! ATGGTGATTTGTCAGATATT+TGG - chr5_4:18176606-18176625 Msa0841700:CDS 30.0%
AAAATCCGAGTAGAATTAAC+TGG + chr5_4:18176668-18176687 None:intergenic 30.0%
! AGTTAATTCTACTCGGATTT+TGG - chr5_4:18176667-18176686 Msa0841700:CDS 30.0%
! GAACTGGTTGTATGATTTTA+AGG - chr5_4:18176739-18176758 Msa0841700:CDS 30.0%
AATTCAGATCAATTGTGTGT+CGG + chr5_4:18176967-18176986 None:intergenic 30.0%
ATCCAGATTAAATGTGTGTT+TGG + chr5_4:18177130-18177149 None:intergenic 30.0%
AATCACTGATACAAAATCAC+AGG + chr5_4:18177155-18177174 None:intergenic 30.0%
! TAATATTAAAGGTGTGTCTG+GGG + chr5_4:18177220-18177239 None:intergenic 30.0%
!! CTACATAGGTTTTGTCTTTT+TGG - chr5_4:18177250-18177269 Msa0841700:CDS 30.0%
!! GAAGATTTTGACCTTTAGAT+TGG - chr5_4:18177547-18177566 Msa0841700:intron 30.0%
CAAGAAAGTTTCCATGAATA+TGG + chr5_4:18177702-18177721 None:intergenic 30.0%
GAAAATTCTGATACAAGTCA+TGG + chr5_4:18177864-18177883 None:intergenic 30.0%
!! TTTTAGAAGACATATGCAAG+AGG - chr5_4:18177890-18177909 Msa0841700:intron 30.0%
CATACCATTCTGAATCAAAA+AGG + chr5_4:18178064-18178083 None:intergenic 30.0%
! AGATACTATTTCAAGTGCAT+TGG - chr5_4:18178200-18178219 Msa0841700:CDS 30.0%
TGATGCTAAGATTAAATGTG+AGG - chr5_4:18178248-18178267 Msa0841700:intron 30.0%
GATGCTAAGATTAAATGTGA+GGG - chr5_4:18178249-18178268 Msa0841700:intron 30.0%
CTGTCTTAAACCTCTTTAAA+TGG + chr5_4:18178341-18178360 None:intergenic 30.0%
GTCAGTATAAAGAATTCACA+AGG + chr5_4:18178490-18178509 None:intergenic 30.0%
TGCCTGTCAACATAAAAAAT+GGG + chr5_4:18178512-18178531 None:intergenic 30.0%
ATGCCTGTCAACATAAAAAA+TGG + chr5_4:18178513-18178532 None:intergenic 30.0%
TCTGTTATACTTGTTCTACT+TGG - chr5_4:18178658-18178677 Msa0841700:intron 30.0%
AAAAGTTGGCTGTAACTTTA+TGG - chr5_4:18178720-18178739 Msa0841700:CDS 30.0%
!!! TTTCCTCAAGATTTTTTCCT+AGG - chr5_4:18178761-18178780 Msa0841700:CDS 30.0%
GGTAATTATTCAGGTAACTA+AGG - chr5_4:18178934-18178953 Msa0841700:intron 30.0%
AGACTTCTCAGAAAATTCTT+TGG + chr5_4:18179176-18179195 None:intergenic 30.0%
!!! AGACTGCATTTGTTTTTATC+AGG + chr5_4:18179415-18179434 None:intergenic 30.0%
TGATAAAAACAAATGCAGTC+TGG - chr5_4:18179414-18179433 Msa0841700:intron 30.0%
TTGTTCAATAACCATTGAGA+TGG - chr5_4:18179565-18179584 Msa0841700:CDS 30.0%
!!! CTTTTTTCTCTTGTTTTCTG+GGG + chr5_4:18179774-18179793 None:intergenic 30.0%
!!! GTCTTTTTTCTCTTGTTTTC+TGG + chr5_4:18179776-18179795 None:intergenic 30.0%
AACAAAAAGACCACAGATAA+AGG + chr5_4:18179954-18179973 None:intergenic 30.0%
TGTCATGACTACATACAATT+TGG + chr5_4:18179994-18180013 None:intergenic 30.0%
ACAGATACAAATAGAAATCG+CGG - chr5_4:18180043-18180062 Msa0841700:five_prime_UTR 30.0%
AAAGAAATACCCAATTGAGC+AGG + chr5_4:18176458-18176477 None:intergenic 35.0%
TGCTCAATTGGGTATTTCTT+TGG - chr5_4:18176457-18176476 Msa0841700:three_prime_UTR 35.0%
GACGTTTATGTTGATGTTGT+CGG - chr5_4:18176500-18176519 Msa0841700:CDS 35.0%
TTTATGTCTGTGATGTACAC+CGG - chr5_4:18176563-18176582 Msa0841700:CDS 35.0%
! TGATTTGTCAGATATTTGGC+CGG - chr5_4:18176610-18176629 Msa0841700:CDS 35.0%
AAAACGCTTACAATCGTCAA+TGG + chr5_4:18176809-18176828 None:intergenic 35.0%
ATTCAGATCAATTGTGTGTC+GGG + chr5_4:18176966-18176985 None:intergenic 35.0%
CTGAATTGTATGTGCTACAT+AGG - chr5_4:18176980-18176999 Msa0841700:CDS 35.0%
CACCAAACACACATTTAATC+TGG - chr5_4:18177125-18177144 Msa0841700:CDS 35.0%
! TTGACGATCTTTTGTTCAAC+AGG - chr5_4:18177286-18177305 Msa0841700:CDS 35.0%
! TGACGATCTTTTGTTCAACA+GGG - chr5_4:18177287-18177306 Msa0841700:CDS 35.0%
ACCTTTAGATTGGGAATTTC+AGG - chr5_4:18177557-18177576 Msa0841700:intron 35.0%
ACCTGAAATTCCCAATCTAA+AGG + chr5_4:18177561-18177580 None:intergenic 35.0%
! TTGGGAATTTCAGGTCATAA+TGG - chr5_4:18177566-18177585 Msa0841700:intron 35.0%
! TGGGAATTTCAGGTCATAAT+GGG - chr5_4:18177567-18177586 Msa0841700:intron 35.0%
AATTATCCACGAATACCACA+GGG + chr5_4:18177661-18177680 None:intergenic 35.0%
AAATTATCCACGAATACCAC+AGG + chr5_4:18177662-18177681 None:intergenic 35.0%
ATTGTGAAGAAAGTCTTTGG+AGG - chr5_4:18177984-18178003 Msa0841700:CDS 35.0%
!! GTCTCCTTTTTGATTCAGAA+TGG - chr5_4:18178057-18178076 Msa0841700:CDS 35.0%
TCTAGACTTAGGTCAATCAA+TGG + chr5_4:18178168-18178187 None:intergenic 35.0%
AAATGGAATGCAGCAATTGA+AGG + chr5_4:18178324-18178343 None:intergenic 35.0%
TTGCTGCATTCCATTTAAAG+AGG - chr5_4:18178328-18178347 Msa0841700:intron 35.0%
!!! GACCCATTTTTTATGTTGAC+AGG - chr5_4:18178507-18178526 Msa0841700:intron 35.0%
TATGCAGTTGTTGTGCATAA+TGG - chr5_4:18178550-18178569 Msa0841700:intron 35.0%
GCAAAAGTTGGATGATTCAA+TGG - chr5_4:18178630-18178649 Msa0841700:intron 35.0%
AGTTTCAAGCTATGAAGACT+GGG + chr5_4:18178789-18178808 None:intergenic 35.0%
TAGTTTCAAGCTATGAAGAC+TGG + chr5_4:18178790-18178809 None:intergenic 35.0%
! AGGTAACTAAGGTATCTGAA+GGG - chr5_4:18178945-18178964 Msa0841700:intron 35.0%
!! ATATTGTTTTATGCCCGACA+AGG - chr5_4:18178992-18179011 Msa0841700:CDS 35.0%
!!! ACCTTGGTTTTCAAGTTTTG+CGG - chr5_4:18179018-18179037 Msa0841700:CDS 35.0%
! GTGATGTCTAAAACAGACTT+GGG + chr5_4:18179088-18179107 None:intergenic 35.0%
! AGTGATGTCTAAAACAGACT+TGG + chr5_4:18179089-18179108 None:intergenic 35.0%
!! TCTGTTTTAGACATCACTGA+TGG - chr5_4:18179091-18179110 Msa0841700:intron 35.0%
ATAATTCACAGGTAGCACTT+GGG + chr5_4:18179335-18179354 None:intergenic 35.0%
AGTGGTAAAAGATCATCATC+AGG - chr5_4:18179650-18179669 Msa0841700:CDS 35.0%
! AAAGACTGATTCATCCAAGT+CGG - chr5_4:18179790-18179809 Msa0841700:CDS 35.0%
! AGTCTTTGACTTTAGGCATT+TGG - chr5_4:18179898-18179917 Msa0841700:CDS 35.0%
GGTGAAAATACCTTTATCTG+TGG - chr5_4:18179941-18179960 Msa0841700:CDS 35.0%
! TACAATTTGGCTAGAGGTAT+TGG + chr5_4:18179981-18180000 None:intergenic 35.0%
ACTACATACAATTTGGCTAG+AGG + chr5_4:18179987-18180006 None:intergenic 35.0%
! TTCTCATGCATAATGGAACA+GGG + chr5_4:18180024-18180043 None:intergenic 35.0%
GTATCTGTTCTCATGCATAA+TGG + chr5_4:18180031-18180050 None:intergenic 35.0%
TCTGATTCAAATTCACCACG+TGG - chr5_4:18176362-18176381 Msa0841700:three_prime_UTR 40.0%
CACAGACATAAACTCATCGT+TGG + chr5_4:18176555-18176574 None:intergenic 40.0%
GATTTGTCAGATATTTGGCC+GGG - chr5_4:18176611-18176630 Msa0841700:CDS 40.0%
ATTTGTCAGATATTTGGCCG+GGG - chr5_4:18176612-18176631 Msa0841700:CDS 40.0%
CGAGTAGAATTAACTGGAAC+CGG + chr5_4:18176662-18176681 None:intergenic 40.0%
CGGTTCCAGTTAATTCTACT+CGG - chr5_4:18176660-18176679 Msa0841700:CDS 40.0%
! TCATCATCAGGAGCATAATC+CGG + chr5_4:18176719-18176738 None:intergenic 40.0%
TACAACCAGTTCTCATCATC+AGG + chr5_4:18176731-18176750 None:intergenic 40.0%
CTAAATTGTCTGTGCTACAG+AGG - chr5_4:18177069-18177088 Msa0841700:CDS 40.0%
AAAGCATGTGTTACCAAGGT+TGG + chr5_4:18177324-18177343 None:intergenic 40.0%
! TGAGAAAGCATGTGTTACCA+AGG + chr5_4:18177328-18177347 None:intergenic 40.0%
ACTCACCATCATTAGGAGAA+TGG + chr5_4:18177412-18177431 None:intergenic 40.0%
! TCCTAATGATGGTGAGTAAG+AGG - chr5_4:18177415-18177434 Msa0841700:intron 40.0%
TCCTCTTACTCACCATCATT+AGG + chr5_4:18177419-18177438 None:intergenic 40.0%
AGGACTGTTTCATCTGATAG+CGG + chr5_4:18177613-18177632 None:intergenic 40.0%
AAACAGTCCTTGCAGTTTAC+TGG - chr5_4:18177623-18177642 Msa0841700:intron 40.0%
AACTCTTCCAGTAAACTGCA+AGG + chr5_4:18177633-18177652 None:intergenic 40.0%
ATTATCCACGAATACCACAG+GGG + chr5_4:18177660-18177679 None:intergenic 40.0%
TGAGTTTATGCAGTGTGCAT+TGG - chr5_4:18177920-18177939 Msa0841700:intron 40.0%
TGCATTGGAGTCTTTCACAA+TGG - chr5_4:18178215-18178234 Msa0841700:CDS 40.0%
!! CTGCAATGAAGAAGTGTCTA+TGG - chr5_4:18178272-18178291 Msa0841700:intron 40.0%
TATGGAGAAGCAGCTTATGT+TGG - chr5_4:18178290-18178309 Msa0841700:intron 40.0%
CAAGCATATCAATTTCCCAC+TGG - chr5_4:18178386-18178405 Msa0841700:CDS 40.0%
TATCAATTTCCCACTGGAGT+TGG - chr5_4:18178392-18178411 Msa0841700:CDS 40.0%
AATGGAACTTCATCTGACTC+TGG - chr5_4:18178568-18178587 Msa0841700:intron 40.0%
ATGGAACTTCATCTGACTCT+GGG - chr5_4:18178569-18178588 Msa0841700:intron 40.0%
GCTCCTAGGAAAAAATCTTG+AGG + chr5_4:18178767-18178786 None:intergenic 40.0%
! CAGGTAACTAAGGTATCTGA+AGG - chr5_4:18178944-18178963 Msa0841700:intron 40.0%
TCCGCAAAACTTGAAAACCA+AGG + chr5_4:18179022-18179041 None:intergenic 40.0%
TTCCATGCTTGAATCTGAGT+AGG - chr5_4:18179050-18179069 Msa0841700:intron 40.0%
ATCCTACTCAGATTCAAGCA+TGG + chr5_4:18179055-18179074 None:intergenic 40.0%
AATATTGAAAAGAGTGGGGC+TGG - chr5_4:18179145-18179164 Msa0841700:intron 40.0%
CATAATTCACAGGTAGCACT+TGG + chr5_4:18179336-18179355 None:intergenic 40.0%
! ACCATTGAGATGGATTTGTC+AGG - chr5_4:18179575-18179594 Msa0841700:CDS 40.0%
ACCTGACAAATCCATCTCAA+TGG + chr5_4:18179579-18179598 None:intergenic 40.0%
CATTTGAAGACAGAGAAGCA+AGG - chr5_4:18179623-18179642 Msa0841700:CDS 40.0%
ATCATCATCAGGCAAGTCTT+CGG - chr5_4:18179661-18179680 Msa0841700:CDS 40.0%
ATCCTCAAAATAAAGCTGCC+AGG - chr5_4:18179687-18179706 Msa0841700:CDS 40.0%
TCCTCAAAATAAAGCTGCCA+GGG - chr5_4:18179688-18179707 Msa0841700:CDS 40.0%
CATATTCCTAACATATGCCC+TGG + chr5_4:18179708-18179727 None:intergenic 40.0%
GCATATGTTAGGAATATGCC+TGG - chr5_4:18179710-18179729 Msa0841700:CDS 40.0%
TTAGGAATATGCCTGGTTCA+AGG - chr5_4:18179717-18179736 Msa0841700:CDS 40.0%
!! TTCAAGGAGAGGTGCATTTT+TGG - chr5_4:18179733-18179752 Msa0841700:CDS 40.0%
!! GGTGCATTTTTGGACTTACT+TGG - chr5_4:18179743-18179762 Msa0841700:CDS 40.0%
!! GCATTTTTGGACTTACTTGG+TGG - chr5_4:18179746-18179765 Msa0841700:CDS 40.0%
!!! TGGCTGTGTACTTGGTTTTT+TGG - chr5_4:18179918-18179937 Msa0841700:CDS 40.0%
!!! GGCTGTGTACTTGGTTTTTT+GGG - chr5_4:18179919-18179938 Msa0841700:CDS 40.0%
!!! GCTGTGTACTTGGTTTTTTG+GGG - chr5_4:18179920-18179939 Msa0841700:CDS 40.0%
! GTTCTCATGCATAATGGAAC+AGG + chr5_4:18180025-18180044 None:intergenic 40.0%
ACAAATAGAAATCGCGGACA+AGG - chr5_4:18180049-18180068 Msa0841700:five_prime_UTR 40.0%
TGTTGTTCTTGTTCACCACG+TGG + chr5_4:18176380-18176399 None:intergenic 45.0%
AACCGTAGATCCTGCTCAAT+TGG - chr5_4:18176445-18176464 Msa0841700:three_prime_UTR 45.0%
ACCGTAGATCCTGCTCAATT+GGG - chr5_4:18176446-18176465 Msa0841700:three_prime_UTR 45.0%
ACCCAATTGAGCAGGATCTA+CGG + chr5_4:18176450-18176469 None:intergenic 45.0%
AGTTTCTGAGCCTGAGGATA+TGG - chr5_4:18176523-18176542 Msa0841700:CDS 45.0%
GTTTCTGAGCCTGAGGATAT+GGG - chr5_4:18176524-18176543 Msa0841700:CDS 45.0%
TTGGTTAAGCCCATATCCTC+AGG + chr5_4:18176536-18176555 None:intergenic 45.0%
AAATCACCATGATCTCGCTG+CGG + chr5_4:18176596-18176615 None:intergenic 45.0%
GCATACACAGCAAGATCCAT+CGG + chr5_4:18176638-18176657 None:intergenic 45.0%
! ATGCTCCTGATGATGAGAAC+TGG - chr5_4:18176723-18176742 Msa0841700:CDS 45.0%
ATTGTCCACCGACACATGTT+AGG - chr5_4:18177102-18177121 Msa0841700:CDS 45.0%
!! GTTTGGTGCCTAACATGTGT+CGG + chr5_4:18177113-18177132 None:intergenic 45.0%
! TCTTTTGTTCAACAGGGAGC+TGG - chr5_4:18177293-18177312 Msa0841700:CDS 45.0%
! CTTTTGTTCAACAGGGAGCT+GGG - chr5_4:18177294-18177313 Msa0841700:CDS 45.0%
AAAAGAAGACCCTCGACTAG+GGG + chr5_4:18177383-18177402 None:intergenic 45.0%
CAAAAGAAGACCCTCGACTA+GGG + chr5_4:18177384-18177403 None:intergenic 45.0%
TCAAAAGAAGACCCTCGACT+AGG + chr5_4:18177385-18177404 None:intergenic 45.0%
AGCTGCCATTCTCCTAATGA+TGG - chr5_4:18177404-18177423 Msa0841700:CDS 45.0%
! GAAAGTCTTTGGAGGCAGTT+TGG - chr5_4:18177992-18178011 Msa0841700:CDS 45.0%
GCTCATTAGTGTCAGAAGAG+TGG + chr5_4:18178146-18178165 None:intergenic 45.0%
GTTGCAAATCCAACTCCAGT+GGG + chr5_4:18178404-18178423 None:intergenic 45.0%
TCCAGACACATGGCAAAAGT+TGG - chr5_4:18178618-18178637 Msa0841700:intron 45.0%
! TCCAACTTTTGCCATGTGTC+TGG + chr5_4:18178622-18178641 None:intergenic 45.0%
AAAACCAAGGTGTGCCTTGT+CGG + chr5_4:18179009-18179028 None:intergenic 45.0%
TTTAGACATCACTGATGGCC+AGG - chr5_4:18179096-18179115 Msa0841700:intron 45.0%
AATCACCTGGAGTCTGAGAA+GGG + chr5_4:18179498-18179517 None:intergenic 45.0%
TCAAATGATCGCGTGAGATC+TGG + chr5_4:18179610-18179629 None:intergenic 45.0%
ACAGAGAAGCAAGGAAGTAG+TGG - chr5_4:18179632-18179651 Msa0841700:CDS 45.0%
AATATGCCTGGTTCAAGGAG+AGG - chr5_4:18179722-18179741 Msa0841700:CDS 45.0%
TAGGCATTTGGCTGTGTACT+TGG - chr5_4:18179910-18179929 Msa0841700:CDS 45.0%
! GGATCTTGCTGTGTATGCTC+CGG - chr5_4:18176640-18176659 Msa0841700:CDS 50.0%
! TCATCAGGAGCATAATCCGG+TGG + chr5_4:18176716-18176735 None:intergenic 50.0%
!! CGGGTATTGACACGTGTAAG+TGG + chr5_4:18176947-18176966 None:intergenic 50.0%
TGGAAGAGTTATCTCCCCTG+TGG - chr5_4:18177643-18177662 Msa0841700:intron 50.0%
TATCTCCCCTGTGGTATTCG+TGG - chr5_4:18177652-18177671 Msa0841700:intron 50.0%
TGGAGGCAGTTTGGTTAGCA+AGG - chr5_4:18178001-18178020 Msa0841700:CDS 50.0%
GGTTGCAAATCCAACTCCAG+TGG + chr5_4:18178405-18178424 None:intergenic 50.0%
AAACCAAGGTGTGCCTTGTC+GGG + chr5_4:18179008-18179027 None:intergenic 50.0%
! TTCTGATTTGATGGCCCAGC+AGG + chr5_4:18179277-18179296 None:intergenic 50.0%
TCAGCATATGAACTCCCACC+AGG + chr5_4:18179382-18179401 None:intergenic 50.0%
ATCACCTGGAGTCTGAGAAG+GGG + chr5_4:18179497-18179516 None:intergenic 50.0%
CAATCACCTGGAGTCTGAGA+AGG + chr5_4:18179499-18179518 None:intergenic 50.0%
!!! GCCCTGGCAGCTTTATTTTG+AGG + chr5_4:18179692-18179711 None:intergenic 50.0%
AAGCTGCCAGGGCATATGTT+AGG - chr5_4:18179699-18179718 Msa0841700:CDS 50.0%
AATGCACCTCTCCTTGAACC+AGG + chr5_4:18179731-18179750 None:intergenic 50.0%
AGCAGTGCTCGCAAGAAATC+AGG - chr5_4:18179824-18179843 Msa0841700:CDS 50.0%
AAATCAGGCCATGCTTCCGT+CGG - chr5_4:18179839-18179858 Msa0841700:CDS 50.0%
TGTCGGAGTTTCTGAGCCTG+AGG - chr5_4:18176517-18176536 Msa0841700:CDS 55.0%
ATCTCGCTGCGGAACATCAC+CGG + chr5_4:18176585-18176604 None:intergenic 55.0%
GATGTTCCGCAGCGAGATCA+TGG - chr5_4:18176587-18176606 Msa0841700:CDS 55.0%
TCCGGTGGATACCAAGCTTC+CGG + chr5_4:18176701-18176720 None:intergenic 55.0%
TGGTGCCTAACATGTGTCGG+TGG + chr5_4:18177110-18177129 None:intergenic 55.0%
CATACTGTGCCCCTAGTCGA+GGG - chr5_4:18177371-18177390 Msa0841700:CDS 55.0%
TTCGCACTGCTCCAGACACA+TGG - chr5_4:18178608-18178627 Msa0841700:intron 55.0%
GCTATGAAGACTGGGCTCCT+AGG + chr5_4:18178781-18178800 None:intergenic 55.0%
TGAAGGGACTGTGCTGTCTC+AGG - chr5_4:18178961-18178980 Msa0841700:CDS 55.0%
! GCAGGAACTTGTTTGCGGCA+AGG + chr5_4:18179259-18179278 None:intergenic 55.0%
TGCCGCAAACAAGTTCCTGC+TGG - chr5_4:18179259-18179278 Msa0841700:intron 55.0%
GCCGCAAACAAGTTCCTGCT+GGG - chr5_4:18179260-18179279 Msa0841700:intron 55.0%
! GCCCAGCAGGAACTTGTTTG+CGG + chr5_4:18179264-18179283 None:intergenic 55.0%
!! GTCGGGCTGGCATAATTCAC+AGG + chr5_4:18179346-18179365 None:intergenic 55.0%
GTGAATTATGCCAGCCCGAC+TGG - chr5_4:18179346-18179365 Msa0841700:intron 55.0%
CAGGCTTTGCAATGCCAGTC+GGG + chr5_4:18179363-18179382 None:intergenic 55.0%
CCAGGCTTTGCAATGCCAGT+CGG + chr5_4:18179364-18179383 None:intergenic 55.0%
ACTGGCATTGCAAAGCCTGG+TGG - chr5_4:18179364-18179383 Msa0841700:intron 55.0%
CTGGCATTGCAAAGCCTGGT+GGG - chr5_4:18179365-18179384 Msa0841700:intron 55.0%
TCACCTGGAGTCTGAGAAGG+GGG + chr5_4:18179496-18179515 None:intergenic 55.0%
GCTGCTGTCTTTGTCCGACT+TGG + chr5_4:18179807-18179826 None:intergenic 55.0%
GTGAAACTCCAGCTGCCACA+GGG + chr5_4:18179871-18179890 None:intergenic 55.0%
TGTGAAACTCCAGCTGCCAC+AGG + chr5_4:18179872-18179891 None:intergenic 55.0%
AGATATTTGGCCGGGGCCGA+TGG - chr5_4:18176619-18176638 Msa0841700:CDS 60.0%
ACAGCAAGATCCATCGGCCC+CGG + chr5_4:18176632-18176651 None:intergenic 60.0%
!!! TCGGATTTTGGCTGTGCCGC+CGG - chr5_4:18176679-18176698 Msa0841700:CDS 60.0%
GGTGGATACCAAGCTTCCGG+CGG + chr5_4:18176698-18176717 None:intergenic 60.0%
GCCGGAAGCTTGGTATCCAC+CGG - chr5_4:18176697-18176716 Msa0841700:CDS 60.0%
GCATACTGTGCCCCTAGTCG+AGG - chr5_4:18177370-18177389 Msa0841700:CDS 60.0%
ATGCCCGACAAGGCACACCT+TGG - chr5_4:18179002-18179021 Msa0841700:CDS 60.0%
CTTTGCAATGCCAGTCGGGC+TGG + chr5_4:18179359-18179378 None:intergenic 60.0%
CCGACTGGCATTGCAAAGCC+TGG - chr5_4:18179361-18179380 Msa0841700:intron 60.0%
GGGGGAGTTGGGAGGAGTTA+AGG + chr5_4:18179476-18179495 None:intergenic 60.0%
GTCTGAGAAGGGGGGGAGTT+GGG + chr5_4:18179487-18179506 None:intergenic 60.0%
AGTCTGAGAAGGGGGGGAGT+TGG + chr5_4:18179488-18179507 None:intergenic 60.0%
ACCTGGAGTCTGAGAAGGGG+GGG + chr5_4:18179494-18179513 None:intergenic 60.0%
CACCTGGAGTCTGAGAAGGG+GGG + chr5_4:18179495-18179514 None:intergenic 60.0%
GGAGCTGGGCTTGCCAACCT+TGG - chr5_4:18177308-18177327 Msa0841700:CDS 65.0%
TGAGAAGGGGGGGAGTTGGG+AGG + chr5_4:18179484-18179503 None:intergenic 65.0%
TCCCCCCCTTCTCAGACTCC+AGG - chr5_4:18179490-18179509 Msa0841700:intron 65.0%
GGTAGCTGCCGACGGAAGCA+TGG + chr5_4:18179850-18179869 None:intergenic 65.0%
TTCCGTCGGCAGCTACCCTG+TGG - chr5_4:18179853-18179872 Msa0841700:CDS 65.0%
TGCCACAGGGTAGCTGCCGA+CGG + chr5_4:18179858-18179877 None:intergenic 65.0%
TGGCTGTGCCGCCGGAAGCT+TGG - chr5_4:18176687-18176706 Msa0841700:CDS 70.0%
GGCAGCTACCCTGTGGCAGC+TGG - chr5_4:18179860-18179879 Msa0841700:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 18176265 18180110 18176265 ID=Msa0841700;Name=Msa0841700
chr5_4 mRNA 18176265 18180110 18176265 ID=Msa0841700-mRNA-1;Parent=Msa0841700;Name=Msa0841700-mRNA-1;_AED=0.08;_eAED=0.08;_QI=94|0.85|0.87|1|1|1|8|215|721
chr5_4 exon 18176265 18176778 18176265 ID=Msa0841700-mRNA-1:exon:7630;Parent=Msa0841700-mRNA-1
chr5_4 exon 18176864 18177428 18176864 ID=Msa0841700-mRNA-1:exon:7629;Parent=Msa0841700-mRNA-1
chr5_4 exon 18177706 18177846 18177706 ID=Msa0841700-mRNA-1:exon:7628;Parent=Msa0841700-mRNA-1
chr5_4 exon 18177923 18178252 18177923 ID=Msa0841700-mRNA-1:exon:7627;Parent=Msa0841700-mRNA-1
chr5_4 exon 18178353 18178498 18178353 ID=Msa0841700-mRNA-1:exon:7626;Parent=Msa0841700-mRNA-1
chr5_4 exon 18178689 18178796 18178689 ID=Msa0841700-mRNA-1:exon:7625;Parent=Msa0841700-mRNA-1
chr5_4 exon 18178950 18179067 18178950 ID=Msa0841700-mRNA-1:exon:7624;Parent=Msa0841700-mRNA-1
chr5_4 exon 18179558 18180110 18179558 ID=Msa0841700-mRNA-1:exon:7623;Parent=Msa0841700-mRNA-1
chr5_4 five_prime_UTR 18180017 18180110 18180017 ID=Msa0841700-mRNA-1:five_prime_utr;Parent=Msa0841700-mRNA-1
chr5_4 CDS 18179558 18180016 18179558 ID=Msa0841700-mRNA-1:cds;Parent=Msa0841700-mRNA-1
chr5_4 CDS 18178950 18179067 18178950 ID=Msa0841700-mRNA-1:cds;Parent=Msa0841700-mRNA-1
chr5_4 CDS 18178689 18178796 18178689 ID=Msa0841700-mRNA-1:cds;Parent=Msa0841700-mRNA-1
chr5_4 CDS 18178353 18178498 18178353 ID=Msa0841700-mRNA-1:cds;Parent=Msa0841700-mRNA-1
chr5_4 CDS 18177923 18178252 18177923 ID=Msa0841700-mRNA-1:cds;Parent=Msa0841700-mRNA-1
chr5_4 CDS 18177706 18177846 18177706 ID=Msa0841700-mRNA-1:cds;Parent=Msa0841700-mRNA-1
chr5_4 CDS 18176864 18177428 18176864 ID=Msa0841700-mRNA-1:cds;Parent=Msa0841700-mRNA-1
chr5_4 CDS 18176480 18176778 18176480 ID=Msa0841700-mRNA-1:cds;Parent=Msa0841700-mRNA-1
chr5_4 three_prime_UTR 18176265 18176479 18176265 ID=Msa0841700-mRNA-1:three_prime_utr;Parent=Msa0841700-mRNA-1
Gene Sequence

>Msa0841700

ATGTCTGATTCAAATTCACCACGTGGTGAACAAGAACAACAAGAGAATCAATTGAATTCATCTTCAACGATGAGTTCAATTTCTGAAACCGTAGATCCTGCTCAATTGGGTATTTCTTTGGCTGATCTTGATGATGACATTGACGTTTATGTTGATGTTGTCGGAGTTTCTGAGCCTGAGGATATGGGCTTAACCAACGATGAGTTTATGTCTGTGATGTACACCGGTGATGTTCCGCAGCGAGATCATGGTGATTTGTCAGATATTTGGCCGGGGCCGATGGATCTTGCTGTGTATGCTCCGGTTCCAGTTAATTCTACTCGGATTTTGGCTGTGCCGCCGGAAGCTTGGTATCCACCGGATTATGCTCCTGATGATGAGAACTGGTTGTATGATTTTAAGGAATCCTTAAAGGATGAAGTTTATGATTCTGATTCTAAAGTTGGGCCATTGACGATTGGAGCTGGGCTTGCCAACCTTGGTAACACATGCTTTCTCAATTCAATTCTGCAATGCTTCACGCATACTGTGCCCCTAGTCGAGGGTCTTCTTTTGAGCTGCCATTCTCCTAATGATGGTCATAATGGGTTCTGTGTTATCTGTGCTTTCCGCTATCAGATGAAACAGTCCTTGCAGTTTACTGGAAGAGTTATCTCCCCTGTGGTATTCGTGGATAATTTGAAGCAATTTTCTAATGATTTTAGAAGACATATGCAAGAGGATGCACATGAGTTTATGCAGTGTGCATTGGATAAACTTGAGACATGTTTTTCAAATTTTGAGGAGGATAATATTGTGAAGAAAGTCTTTGGAGGCAGTTTGGTTAGCAAGCTTCAGTGTTGTAACTGTAGCCACTCTTCTGACACTAATGAGCCATTGATTGACCTAAGTCTAGAAATAGAAAATGTAGATACTATTTCAAGTGCATTGGAGTCTTTCACAATGGTAGAAAAGATTGATGCTAAGATTAAATGTGAGGGCTGCAATGAAGAAGTGTCTATGGAGAAGCAGCTTATGTTGGATCAGACACCTTCAATTGCTGCATTCCATTTAAAGAGGTTTAAGACAGTTGAGAAGTCAGTTGAAAAGATTGACAAGCATATCAATTTCCCACTGGAGTTGGATTTGCAACCTTACACTATTTTGAATGAAAACAATGATGCATCATTGAAATATGATCTATATGCAGTTGTTGTGCATAATGGAACTTCATCTGACTCTGGGCATTATTTCTGCTTTGTTCGCACTGCTCCAGACACATGGCAAAAGTTGGATGATTCAATGGTAGCATCTGTTATACTTGTAACTAAGGTATCTGAAGGGACTGTGCTGTCTCAGGAAGCATACATATTGTTTTATGCCCGACAAGGCACACCTTGGTTTTCAAGTTTTGCGGAATCTACAATTCCATGCTTGAATCTGAGTAGGATGAACACGTCTCCCAAGTCTGTTTTAGACATCACTGATGGCCAGGATAAATCATTTTCTATTTTAAATGAAAATATTGAAAAGAGTGGGGCTGGTAAATCCAAAGAATTTTCTGAGAAGTCTGATTATTCTTGTCAACAAAGTCGCAAGTTTCCTGAAAATGATGATGTTATTGATGCTTCTCCTTGCCGCAAACAAGTTCCTGCTGGGCCATCAAATCAGAAAAATCTTCATTTGAATGGATCGGAAGATATCAGCGCCCAAGTGCTACCTGTGAATTATGCCAGCCCGACTGGCATTGCAAAGCCTGGTGGGAGTTCATATGCTGAGAATGTTGCTCCTGATAAAAACAAATGCAGTCTGGAAGCTAATGATTTTATAGAGAATGATGTTTTCAATGCCTTAACTCCTCCCAACTCCCCCCCTTCTCAGACTCCAGGTAAGAGTTTCCAGATCTCACGCGATCATTTGAAGACAGAGAAGCAAGGAAGTAGTGGTAAAAGATCATCATCAGGCAAGTCTTCGGATAATCCTCAAAATAAAGCTGCCAGGGCATATGTTAGGAATATGCCTGGTTCAAGGAGAGGTGCATTTTTGGACTTACTTGGTGGTTCCCCAGAAAACAAGAGAAAAAAGACTGATTCATCCAAGTCGGACAAAGACAGCAGCAGTGCTCGCAAGAAATCAGGCCATGCTTCCGTCGGCAGCTACCCTGTGGCAGCTGGAGTTTCACATTGA
Protein sequence

>Msa0841700

MSDSNSPRGEQEQQENQLNSSSTMSSISETVDPAQLGISLADLDDDIDVYVDVVGVSEPEDMGLTNDEFMSVMYTGDVPQRDHGDLSDIWPGPMDLAVYAPVPVNSTRILAVPPEAWYPPDYAPDDENWLYDFKESLKDEVYDSDSKVGPLTIGAGLANLGNTCFLNSILQCFTHTVPLVEGLLLSCHSPNDGHNGFCVICAFRYQMKQSLQFTGRVISPVVFVDNLKQFSNDFRRHMQEDAHEFMQCALDKLETCFSNFEEDNIVKKVFGGSLVSKLQCCNCSHSSDTNEPLIDLSLEIENVDTISSALESFTMVEKIDAKIKCEGCNEEVSMEKQLMLDQTPSIAAFHLKRFKTVEKSVEKIDKHINFPLELDLQPYTILNENNDASLKYDLYAVVVHNGTSSDSGHYFCFVRTAPDTWQKLDDSMVASVILVTKVSEGTVLSQEAYILFYARQGTPWFSSFAESTIPCLNLSRMNTSPKSVLDITDGQDKSFSILNENIEKSGAGKSKEFSEKSDYSCQQSRKFPENDDVIDASPCRKQVPAGPSNQKNLHLNGSEDISAQVLPVNYASPTGIAKPGGSSYAENVAPDKNKCSLEANDFIENDVFNALTPPNSPPSQTPGKSFQISRDHLKTEKQGSSGKRSSSGKSSDNPQNKAARAYVRNMPGSRRGAFLDLLGGSPENKRKKTDSSKSDKDSSSARKKSGHASVGSYPVAAGVSH*