AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0778600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778600 MtrunA17_Chr5g0434691 97.549 204 5 0 1 204 1 204 4.11e-140 389
Msa0778600 MtrunA17_Chr3g0110481 53.535 198 65 6 1 194 1 175 7.47e-48 155
Msa0778600 MtrunA17_Chr8g0392851 39.269 219 82 9 13 192 28 234 4.52e-22 92.8
Msa0778600 MtrunA17_Chr6g0482691 43.000 100 45 3 13 100 43 142 5.53e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778600 AT1G14900.1 45.500 200 75 5 10 197 21 198 2.55e-42 142
Msa0778600 AT3G18035.1 35.772 123 40 1 13 96 66 188 2.02e-15 74.3
Msa0778600 AT3G18035.2 35.772 123 40 1 13 96 66 188 5.40e-15 72.8
Msa0778600 AT1G48620.1 48.387 62 32 0 15 76 78 139 2.71e-14 71.2

Find 93 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTATTATGCATAATTT+TGG 0.129688 5_2:-59142162 None:intergenic
GGGGTCTTGGGAGGTGCATT+AGG 0.195810 5_2:-59141603 None:intergenic
TCAGTCCTTTGAACCTTCTT+TGG 0.198015 5_2:-59141660 None:intergenic
CCTCTCTTTGGTGGTGCATT+TGG 0.255109 5_2:-59141486 None:intergenic
CTTCCACTTGAAGCAGCCTT+AGG 0.283817 5_2:-59141624 None:intergenic
ATCATAGATGATTGATTAGA+TGG 0.303766 5_2:+59141854 Msa0778600:exon
GATCTGAGGATTGAATTTAA+AGG 0.320514 5_2:-59140724 None:intergenic
GGTCTTCCACGTCCTCTCTT+TGG 0.323730 5_2:-59141498 None:intergenic
CTTAACCAGATGAAGGAAAA+TGG 0.327311 5_2:+59141423 Msa0778600:CDS
TTTGGTGGTGCATTTGGATC+AGG 0.346536 5_2:-59141480 None:intergenic
GCCAATGGATCCTTTGGCTT+TGG 0.350044 5_2:-59141522 None:intergenic
GGGTCTTGGGAGGTGCATTA+GGG 0.356682 5_2:-59141602 None:intergenic
TGAAGCAGCCTTAGGGGTCT+TGG 0.357314 5_2:-59141616 None:intergenic
AGAACAATTGAATGGCCTTC+TGG 0.359176 5_2:-59141390 None:intergenic
AATGGATCCTTTGGCTTTGG+TGG 0.367305 5_2:-59141519 None:intergenic
GTCAAACATGACAGTGACTT+TGG 0.368090 5_2:+59142063 Msa0778600:three_prime_UTR
TTCCACTTGAAGCAGCCTTA+GGG 0.394198 5_2:-59141623 None:intergenic
GGAGGTGCATTAGGGTCCTT+AGG 0.395197 5_2:-59141594 None:intergenic
AACTACATAGAATCAATCTA+TGG 0.397570 5_2:+59141360 Msa0778600:CDS
GACGACCTCTTGGCCTTGGT+GGG 0.404356 5_2:-59141569 None:intergenic
GGTGGAGCCAATGGATCCTT+TGG 0.422272 5_2:-59141528 None:intergenic
GGAGGACGACCTCTTGGCCT+TGG 0.423053 5_2:-59141573 None:intergenic
TTCAGATGAACACAAGATAT+AGG 0.426044 5_2:+59140632 None:intergenic
CTTCCCCTTCCACTAGTAGT+TGG 0.429832 5_2:-59141783 None:intergenic
GATGATTTGTTTGAACCATT+TGG 0.430370 5_2:-59141330 None:intergenic
GGACGACCTCTTGGCCTTGG+TGG 0.430385 5_2:-59141570 None:intergenic
GAAGCAGCCTTAGGGGTCTT+GGG 0.435245 5_2:-59141615 None:intergenic
GACAGAACAGCAGCTGGTGG+TGG 0.460682 5_2:-59141546 None:intergenic
ACTACTAGTGGAAGGGGAAG+GGG 0.460928 5_2:+59141786 Msa0778600:CDS
TAGTCTAAGAAGAGACTTGT+TGG 0.463890 5_2:+59142025 Msa0778600:three_prime_UTR
TCAAACATGACAGTGACTTT+GGG 0.469100 5_2:+59142064 Msa0778600:three_prime_UTR
GTGTGAATTACCTCAGGGTA+TGG 0.477814 5_2:-59140905 None:intergenic
TCCTTAGGAGGACGACCTCT+TGG 0.478277 5_2:-59141579 None:intergenic
GTCATCTGAGGCTTAACCTT+AGG 0.479453 5_2:-59141816 None:intergenic
AACTACTAGTGGAAGGGGAA+GGG 0.479852 5_2:+59141785 Msa0778600:CDS
GATGAACACAAGATATAGGT+TGG 0.492453 5_2:+59140636 None:intergenic
AGTCTAAGAAGAGACTTGTT+GGG 0.507234 5_2:+59142026 Msa0778600:three_prime_UTR
CTTCCACGTCCTCTCTTTGG+TGG 0.517078 5_2:-59141495 None:intergenic
GATTTGCAAGAACAATTGAA+TGG 0.519543 5_2:-59141398 None:intergenic
GCAGCTGGTGGTGGAGCCAA+TGG 0.520984 5_2:-59141537 None:intergenic
GGGAAGGGGTAGGCCTCCTA+AGG 0.528357 5_2:+59141800 Msa0778600:CDS
GTAGATGATTATGAAGGCAC+TGG 0.529915 5_2:+59141293 Msa0778600:intron
AAGGCTGCTTCAAGTGGAAG+AGG 0.531029 5_2:+59141627 Msa0778600:CDS
ACCCCTAAGGCTGCTTCAAG+TGG 0.532524 5_2:+59141621 Msa0778600:CDS
GCCAAGAGGTCGTCCTCCTA+AGG 0.534326 5_2:+59141578 Msa0778600:CDS
TCCACTTGAAGCAGCCTTAG+GGG 0.536454 5_2:-59141622 None:intergenic
ATCTGAGGCTTAACCTTAGG+AGG 0.537376 5_2:-59141813 None:intergenic
ATGAACACAAGATATAGGTT+GGG 0.537497 5_2:+59140637 None:intergenic
ACCAAAGCCAAAGGATCCAT+TGG 0.542885 5_2:+59141521 Msa0778600:CDS
GCTTCAAGTGGAAGAGGAAG+GGG 0.550156 5_2:+59141633 Msa0778600:CDS
GGTGGGGACAGAACAGCAGC+TGG 0.550403 5_2:-59141552 None:intergenic
TGCTTCAAGTGGAAGAGGAA+GGG 0.550902 5_2:+59141632 Msa0778600:CDS
AGGAAGGGGTAGGCCAAAGA+AGG 0.551487 5_2:+59141647 Msa0778600:CDS
ACAGCAACAGCAGCAACACT+TGG 0.556119 5_2:-59141759 None:intergenic
CAACTACTAGTGGAAGGGGA+AGG 0.556781 5_2:+59141784 Msa0778600:CDS
CCAGCACCATCTCCACCACT+TGG 0.561242 5_2:-59141696 None:intergenic
GGGTATGGAGGAAGTGAAAG+AGG 0.561822 5_2:-59140890 None:intergenic
CTGCTTCAAGTGGAAGAGGA+AGG 0.565034 5_2:+59141631 Msa0778600:CDS
AGCTTCAATGGCTACTCAAG+AGG 0.565718 5_2:+59140859 Msa0778600:exon
GTGTTGTCAAGATCTTACTT+TGG 0.566186 5_2:+59142124 Msa0778600:three_prime_UTR
AAATCACCTTAACCAGATGA+AGG 0.568245 5_2:+59141416 Msa0778600:CDS
TGCACCTCCCAAGACCCCTA+AGG 0.569439 5_2:+59141608 Msa0778600:CDS
TTTGTAAAATCTCCATGTAG+TGG 0.570739 5_2:+59141996 Msa0778600:three_prime_UTR
GAAGCACTGAATGAACCAAA+TGG 0.572522 5_2:+59141315 Msa0778600:CDS
GTAGTGATTAAATGTAGAAG+TGG 0.573838 5_2:+59141908 Msa0778600:three_prime_UTR
CTGTTCCAACTACTAGTGGA+AGG 0.576494 5_2:+59141778 Msa0778600:CDS
CTGCTGTTCTGTCCCCACCA+AGG 0.579342 5_2:+59141556 Msa0778600:CDS
TAGTGATTAAATGTAGAAGT+GGG 0.585673 5_2:+59141909 Msa0778600:three_prime_UTR
GTTCCAACTACTAGTGGAAG+GGG 0.585748 5_2:+59141780 Msa0778600:CDS
AGACTAAACTAACCACTACA+TGG 0.595678 5_2:-59142008 None:intergenic
TCAAATCCAAGTGGTGGAGA+TGG 0.596389 5_2:+59141690 Msa0778600:CDS
GTTGCTGTTCCAACTACTAG+TGG 0.598369 5_2:+59141774 Msa0778600:CDS
ACGACCTCTTGGCCTTGGTG+GGG 0.598499 5_2:-59141568 None:intergenic
GCACCACCAAAGAGAGGACG+TGG 0.602504 5_2:+59141492 Msa0778600:CDS
CCAAGTGGTGGAGATGGTGC+TGG 0.603694 5_2:+59141696 Msa0778600:CDS
AATGTTTCAAATCCAAGTGG+TGG 0.604254 5_2:+59141684 Msa0778600:CDS
GGGGACAGAACAGCAGCTGG+TGG 0.609403 5_2:-59141549 None:intergenic
TGTTCCAACTACTAGTGGAA+GGG 0.611701 5_2:+59141779 Msa0778600:CDS
TGAATTACCTCAGGGTATGG+AGG 0.618283 5_2:-59140902 None:intergenic
ATCTATGGTGAATTACCAGA+AGG 0.621839 5_2:+59141375 Msa0778600:CDS
GTAGGCCAAAGAAGGTTCAA+AGG 0.622028 5_2:+59141655 Msa0778600:CDS
ACACTCACTTCAGTCATCTG+AGG 0.623459 5_2:-59141828 None:intergenic
GGTGCATTAGGGTCCTTAGG+AGG 0.623591 5_2:-59141591 None:intergenic
TGGAAGACCACCAAAGCCAA+AGG 0.624315 5_2:+59141512 Msa0778600:CDS
ATTAAATGTAGAAGTGGGTG+TGG 0.625542 5_2:+59141914 Msa0778600:three_prime_UTR
GCAGCCTTAGGGGTCTTGGG+AGG 0.627198 5_2:-59141612 None:intergenic
CCAAATGCACCACCAAAGAG+AGG 0.648545 5_2:+59141486 Msa0778600:CDS
CTAGTGGAAGGGGAAGGGGT+AGG 0.654025 5_2:+59141790 Msa0778600:CDS
CTGTCCCCACCAAGGCCAAG+AGG 0.676490 5_2:+59141564 Msa0778600:CDS
TTCACTTCCTCCATACCCTG+AGG 0.676529 5_2:+59140895 Msa0778600:CDS
GAGAATGTTTCAAATCCAAG+TGG 0.689463 5_2:+59141681 Msa0778600:CDS
CAAGTGGAAGAGGAAGGGGT+AGG 0.697070 5_2:+59141637 Msa0778600:CDS
TGTGATAGTTGCAAGATCTG+AGG 0.701586 5_2:-59140738 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAGGAAATTTTTTTTA+GGG + chr5_2:59141091-59141110 Msa0778600:intron 10.0%
!!! AAATAAGGAAATTTTTTTTA+GGG + chr5_2:59141091-59141110 Msa0778600:intron 10.0%
!! AAGAAAAATGTATTAAAGAT+TGG - chr5_2:59140704-59140723 None:intergenic 15.0%
!! TTCTTGAAAAAATAAGAAAA+GGG - chr5_2:59140950-59140969 None:intergenic 15.0%
!! TTTCTTGAAAAAATAAGAAA+AGG - chr5_2:59140951-59140970 None:intergenic 15.0%
!!! CAAATAAGGAAATTTTTTTT+AGG + chr5_2:59141090-59141109 Msa0778600:intron 15.0%
!!! TGAATTATTATGCATAATTT+TGG - chr5_2:59142165-59142184 None:intergenic 15.0%
!! AAGAAAAATGTATTAAAGAT+TGG - chr5_2:59140704-59140723 None:intergenic 15.0%
!! TTCTTGAAAAAATAAGAAAA+GGG - chr5_2:59140950-59140969 None:intergenic 15.0%
!! TTTCTTGAAAAAATAAGAAA+AGG - chr5_2:59140951-59140970 None:intergenic 15.0%
!!! CAAATAAGGAAATTTTTTTT+AGG + chr5_2:59141090-59141109 Msa0778600:intron 15.0%
!!! TGAATTATTATGCATAATTT+TGG - chr5_2:59142165-59142184 None:intergenic 15.0%
!! TCTTGAAAAAATAAGAAAAG+GGG - chr5_2:59140949-59140968 None:intergenic 20.0%
!!! TTTAACAATTTTTACTCACT+TGG + chr5_2:59141019-59141038 Msa0778600:intron 20.0%
!!! TTAACAATTTTTACTCACTT+GGG + chr5_2:59141020-59141039 Msa0778600:intron 20.0%
!! AAATCATTCAACATGTTAAT+GGG - chr5_2:59141202-59141221 None:intergenic 20.0%
!! AAAATCATTCAACATGTTAA+TGG - chr5_2:59141203-59141222 None:intergenic 20.0%
!!! ATGCATAATAATTCATTTTG+TGG + chr5_2:59142170-59142189 Msa0778600:three_prime_UTR 20.0%
!!! AATAATTCATTTTGTGGAAA+AGG + chr5_2:59142176-59142195 Msa0778600:three_prime_UTR 20.0%
!! TCTTGAAAAAATAAGAAAAG+GGG - chr5_2:59140949-59140968 None:intergenic 20.0%
!!! TTTAACAATTTTTACTCACT+TGG + chr5_2:59141019-59141038 Msa0778600:intron 20.0%
!!! TTAACAATTTTTACTCACTT+GGG + chr5_2:59141020-59141039 Msa0778600:intron 20.0%
!! AAATCATTCAACATGTTAAT+GGG - chr5_2:59141202-59141221 None:intergenic 20.0%
!! AAAATCATTCAACATGTTAA+TGG - chr5_2:59141203-59141222 None:intergenic 20.0%
!!! ATGCATAATAATTCATTTTG+TGG + chr5_2:59142170-59142189 Msa0778600:three_prime_UTR 20.0%
!!! ATTGCTACTTTTACTATGAA+AGG - chr5_2:59140979-59140998 None:intergenic 25.0%
!!! GCTGTTTTTGTAATCAAATA+AGG + chr5_2:59141076-59141095 Msa0778600:intron 25.0%
!!! TACAAAGACTTTTTTCTGTT+TGG - chr5_2:59141133-59141152 None:intergenic 25.0%
!! GATTTTGTAGATGATTATGA+AGG + chr5_2:59141287-59141306 Msa0778600:intron 25.0%
! AACTACATAGAATCAATCTA+TGG + chr5_2:59141360-59141379 Msa0778600:CDS 25.0%
! ATCATAGATGATTGATTAGA+TGG + chr5_2:59141854-59141873 Msa0778600:exon 25.0%
! TAGTGATTAAATGTAGAAGT+GGG + chr5_2:59141909-59141928 Msa0778600:three_prime_UTR 25.0%
!!! ATTGCTACTTTTACTATGAA+AGG - chr5_2:59140979-59140998 None:intergenic 25.0%
!!! GCTGTTTTTGTAATCAAATA+AGG + chr5_2:59141076-59141095 Msa0778600:intron 25.0%
!!! TACAAAGACTTTTTTCTGTT+TGG - chr5_2:59141133-59141152 None:intergenic 25.0%
!! GATTTTGTAGATGATTATGA+AGG + chr5_2:59141287-59141306 Msa0778600:intron 25.0%
! AACTACATAGAATCAATCTA+TGG + chr5_2:59141360-59141379 Msa0778600:CDS 25.0%
! ATCATAGATGATTGATTAGA+TGG + chr5_2:59141854-59141873 Msa0778600:exon 25.0%
! TAGTGATTAAATGTAGAAGT+GGG + chr5_2:59141909-59141928 Msa0778600:three_prime_UTR 25.0%
GATCTGAGGATTGAATTTAA+AGG - chr5_2:59140727-59140746 None:intergenic 30.0%
!! TCACTATTTTCAAGCTTCAA+TGG + chr5_2:59140847-59140866 Msa0778600:exon 30.0%
! TCAAGATTACTATTTGGTGA+GGG - chr5_2:59141056-59141075 None:intergenic 30.0%
AACAGCTCAAGATTACTATT+TGG - chr5_2:59141062-59141081 None:intergenic 30.0%
! GTTGAATGATTTTCTCAACA+TGG + chr5_2:59141210-59141229 Msa0778600:intron 30.0%
!! GATGATTTGTTTGAACCATT+TGG - chr5_2:59141333-59141352 None:intergenic 30.0%
GATTTGCAAGAACAATTGAA+TGG - chr5_2:59141401-59141420 None:intergenic 30.0%
AGTTGTTCTTTGCAAAAACA+AGG - chr5_2:59141452-59141471 None:intergenic 30.0%
GTAGTGATTAAATGTAGAAG+TGG + chr5_2:59141908-59141927 Msa0778600:three_prime_UTR 30.0%
TTTGTAAAATCTCCATGTAG+TGG + chr5_2:59141996-59142015 Msa0778600:three_prime_UTR 30.0%
GATCTGAGGATTGAATTTAA+AGG - chr5_2:59140727-59140746 None:intergenic 30.0%
!! TCACTATTTTCAAGCTTCAA+TGG + chr5_2:59140847-59140866 Msa0778600:exon 30.0%
! TCAAGATTACTATTTGGTGA+GGG - chr5_2:59141056-59141075 None:intergenic 30.0%
AACAGCTCAAGATTACTATT+TGG - chr5_2:59141062-59141081 None:intergenic 30.0%
! GTTGAATGATTTTCTCAACA+TGG + chr5_2:59141210-59141229 Msa0778600:intron 30.0%
!! GATGATTTGTTTGAACCATT+TGG - chr5_2:59141333-59141352 None:intergenic 30.0%
GATTTGCAAGAACAATTGAA+TGG - chr5_2:59141401-59141420 None:intergenic 30.0%
AGTTGTTCTTTGCAAAAACA+AGG - chr5_2:59141452-59141471 None:intergenic 30.0%
GTAGTGATTAAATGTAGAAG+TGG + chr5_2:59141908-59141927 Msa0778600:three_prime_UTR 30.0%
TTTGTAAAATCTCCATGTAG+TGG + chr5_2:59141996-59142015 Msa0778600:three_prime_UTR 30.0%
! AGATATAGGTTGGGAAAAAG+AGG + chr5_2:59140646-59140665 Msa0778600:five_prime_UTR 35.0%
! AAGGGGTGTATGTTGAATTA+GGG - chr5_2:59140932-59140951 None:intergenic 35.0%
! AAAGGGGTGTATGTTGAATT+AGG - chr5_2:59140933-59140952 None:intergenic 35.0%
! CAAGATTACTATTTGGTGAG+GGG - chr5_2:59141055-59141074 None:intergenic 35.0%
! CTCAAGATTACTATTTGGTG+AGG - chr5_2:59141057-59141076 None:intergenic 35.0%
ATCTATGGTGAATTACCAGA+AGG + chr5_2:59141375-59141394 Msa0778600:CDS 35.0%
AAATCACCTTAACCAGATGA+AGG + chr5_2:59141416-59141435 Msa0778600:CDS 35.0%
! CATTTTCCTTCATCTGGTTA+AGG - chr5_2:59141425-59141444 None:intergenic 35.0%
CTTAACCAGATGAAGGAAAA+TGG + chr5_2:59141423-59141442 Msa0778600:CDS 35.0%
GAGAATGTTTCAAATCCAAG+TGG + chr5_2:59141681-59141700 Msa0778600:CDS 35.0%
AATGTTTCAAATCCAAGTGG+TGG + chr5_2:59141684-59141703 Msa0778600:CDS 35.0%
ATTAAATGTAGAAGTGGGTG+TGG + chr5_2:59141914-59141933 Msa0778600:three_prime_UTR 35.0%
AGACTAAACTAACCACTACA+TGG - chr5_2:59142011-59142030 None:intergenic 35.0%
TAGTCTAAGAAGAGACTTGT+TGG + chr5_2:59142025-59142044 Msa0778600:three_prime_UTR 35.0%
! AGTCTAAGAAGAGACTTGTT+GGG + chr5_2:59142026-59142045 Msa0778600:three_prime_UTR 35.0%
TCAAACATGACAGTGACTTT+GGG + chr5_2:59142064-59142083 Msa0778600:three_prime_UTR 35.0%
GTGTTGTCAAGATCTTACTT+TGG + chr5_2:59142124-59142143 Msa0778600:three_prime_UTR 35.0%
! AGATATAGGTTGGGAAAAAG+AGG + chr5_2:59140646-59140665 Msa0778600:five_prime_UTR 35.0%
! AAGGGGTGTATGTTGAATTA+GGG - chr5_2:59140932-59140951 None:intergenic 35.0%
! AAAGGGGTGTATGTTGAATT+AGG - chr5_2:59140933-59140952 None:intergenic 35.0%
! CAAGATTACTATTTGGTGAG+GGG - chr5_2:59141055-59141074 None:intergenic 35.0%
! CTCAAGATTACTATTTGGTG+AGG - chr5_2:59141057-59141076 None:intergenic 35.0%
ATCTATGGTGAATTACCAGA+AGG + chr5_2:59141375-59141394 Msa0778600:CDS 35.0%
AAATCACCTTAACCAGATGA+AGG + chr5_2:59141416-59141435 Msa0778600:CDS 35.0%
! CATTTTCCTTCATCTGGTTA+AGG - chr5_2:59141425-59141444 None:intergenic 35.0%
CTTAACCAGATGAAGGAAAA+TGG + chr5_2:59141423-59141442 Msa0778600:CDS 35.0%
GAGAATGTTTCAAATCCAAG+TGG + chr5_2:59141681-59141700 Msa0778600:CDS 35.0%
AATGTTTCAAATCCAAGTGG+TGG + chr5_2:59141684-59141703 Msa0778600:CDS 35.0%
ATTAAATGTAGAAGTGGGTG+TGG + chr5_2:59141914-59141933 Msa0778600:three_prime_UTR 35.0%
AGACTAAACTAACCACTACA+TGG - chr5_2:59142011-59142030 None:intergenic 35.0%
TAGTCTAAGAAGAGACTTGT+TGG + chr5_2:59142025-59142044 Msa0778600:three_prime_UTR 35.0%
! AGTCTAAGAAGAGACTTGTT+GGG + chr5_2:59142026-59142045 Msa0778600:three_prime_UTR 35.0%
TCAAACATGACAGTGACTTT+GGG + chr5_2:59142064-59142083 Msa0778600:three_prime_UTR 35.0%
GTGTTGTCAAGATCTTACTT+TGG + chr5_2:59142124-59142143 Msa0778600:three_prime_UTR 35.0%
TGTGATAGTTGCAAGATCTG+AGG - chr5_2:59140741-59140760 None:intergenic 40.0%
! AGGGGTGTATGTTGAATTAG+GGG - chr5_2:59140931-59140950 None:intergenic 40.0%
! GTAGATGATTATGAAGGCAC+TGG + chr5_2:59141293-59141312 Msa0778600:intron 40.0%
!! GAAGCACTGAATGAACCAAA+TGG + chr5_2:59141315-59141334 Msa0778600:CDS 40.0%
AGAACAATTGAATGGCCTTC+TGG - chr5_2:59141393-59141412 None:intergenic 40.0%
TCAGTCCTTTGAACCTTCTT+TGG - chr5_2:59141663-59141682 None:intergenic 40.0%
TGTTCCAACTACTAGTGGAA+GGG + chr5_2:59141779-59141798 Msa0778600:CDS 40.0%
GTCAAACATGACAGTGACTT+TGG + chr5_2:59142063-59142082 Msa0778600:three_prime_UTR 40.0%
TGTGATAGTTGCAAGATCTG+AGG - chr5_2:59140741-59140760 None:intergenic 40.0%
! AGGGGTGTATGTTGAATTAG+GGG - chr5_2:59140931-59140950 None:intergenic 40.0%
! GTAGATGATTATGAAGGCAC+TGG + chr5_2:59141293-59141312 Msa0778600:intron 40.0%
!! GAAGCACTGAATGAACCAAA+TGG + chr5_2:59141315-59141334 Msa0778600:CDS 40.0%
AGAACAATTGAATGGCCTTC+TGG - chr5_2:59141393-59141412 None:intergenic 40.0%
TCAGTCCTTTGAACCTTCTT+TGG - chr5_2:59141663-59141682 None:intergenic 40.0%
TGTTCCAACTACTAGTGGAA+GGG + chr5_2:59141779-59141798 Msa0778600:CDS 40.0%
GTCAAACATGACAGTGACTT+TGG + chr5_2:59142063-59142082 Msa0778600:three_prime_UTR 40.0%
AGCTTCAATGGCTACTCAAG+AGG + chr5_2:59140859-59140878 Msa0778600:exon 45.0%
TGAATTACCTCAGGGTATGG+AGG - chr5_2:59140905-59140924 None:intergenic 45.0%
GTGTGAATTACCTCAGGGTA+TGG - chr5_2:59140908-59140927 None:intergenic 45.0%
GGGGTGTATGTTGAATTAGG+GGG - chr5_2:59140930-59140949 None:intergenic 45.0%
! GGTCACCATTTTCCTTCATC+TGG - chr5_2:59141431-59141450 None:intergenic 45.0%
!! TTTGGTGGTGCATTTGGATC+AGG - chr5_2:59141483-59141502 None:intergenic 45.0%
!! AATGGATCCTTTGGCTTTGG+TGG - chr5_2:59141522-59141541 None:intergenic 45.0%
ACCAAAGCCAAAGGATCCAT+TGG + chr5_2:59141521-59141540 Msa0778600:CDS 45.0%
TTCCACTTGAAGCAGCCTTA+GGG - chr5_2:59141626-59141645 None:intergenic 45.0%
TGCTTCAAGTGGAAGAGGAA+GGG + chr5_2:59141632-59141651 Msa0778600:CDS 45.0%
GTAGGCCAAAGAAGGTTCAA+AGG + chr5_2:59141655-59141674 Msa0778600:CDS 45.0%
! TCAAATCCAAGTGGTGGAGA+TGG + chr5_2:59141690-59141709 Msa0778600:CDS 45.0%
! GTTGCTGTTCCAACTACTAG+TGG + chr5_2:59141774-59141793 Msa0778600:CDS 45.0%
CTGTTCCAACTACTAGTGGA+AGG + chr5_2:59141778-59141797 Msa0778600:CDS 45.0%
GTTCCAACTACTAGTGGAAG+GGG + chr5_2:59141780-59141799 Msa0778600:CDS 45.0%
AACTACTAGTGGAAGGGGAA+GGG + chr5_2:59141785-59141804 Msa0778600:CDS 45.0%
! ATCTGAGGCTTAACCTTAGG+AGG - chr5_2:59141816-59141835 None:intergenic 45.0%
! GTCATCTGAGGCTTAACCTT+AGG - chr5_2:59141819-59141838 None:intergenic 45.0%
ACACTCACTTCAGTCATCTG+AGG - chr5_2:59141831-59141850 None:intergenic 45.0%
AGCTTCAATGGCTACTCAAG+AGG + chr5_2:59140859-59140878 Msa0778600:exon 45.0%
TGAATTACCTCAGGGTATGG+AGG - chr5_2:59140905-59140924 None:intergenic 45.0%
GTGTGAATTACCTCAGGGTA+TGG - chr5_2:59140908-59140927 None:intergenic 45.0%
GGGGTGTATGTTGAATTAGG+GGG - chr5_2:59140930-59140949 None:intergenic 45.0%
! GGTCACCATTTTCCTTCATC+TGG - chr5_2:59141431-59141450 None:intergenic 45.0%
!! TTTGGTGGTGCATTTGGATC+AGG - chr5_2:59141483-59141502 None:intergenic 45.0%
!! AATGGATCCTTTGGCTTTGG+TGG - chr5_2:59141522-59141541 None:intergenic 45.0%
ACCAAAGCCAAAGGATCCAT+TGG + chr5_2:59141521-59141540 Msa0778600:CDS 45.0%
TTCCACTTGAAGCAGCCTTA+GGG - chr5_2:59141626-59141645 None:intergenic 45.0%
TGCTTCAAGTGGAAGAGGAA+GGG + chr5_2:59141632-59141651 Msa0778600:CDS 45.0%
GTAGGCCAAAGAAGGTTCAA+AGG + chr5_2:59141655-59141674 Msa0778600:CDS 45.0%
! TCAAATCCAAGTGGTGGAGA+TGG + chr5_2:59141690-59141709 Msa0778600:CDS 45.0%
! GTTGCTGTTCCAACTACTAG+TGG + chr5_2:59141774-59141793 Msa0778600:CDS 45.0%
CTGTTCCAACTACTAGTGGA+AGG + chr5_2:59141778-59141797 Msa0778600:CDS 45.0%
GTTCCAACTACTAGTGGAAG+GGG + chr5_2:59141780-59141799 Msa0778600:CDS 45.0%
AACTACTAGTGGAAGGGGAA+GGG + chr5_2:59141785-59141804 Msa0778600:CDS 45.0%
! ATCTGAGGCTTAACCTTAGG+AGG - chr5_2:59141816-59141835 None:intergenic 45.0%
! GTCATCTGAGGCTTAACCTT+AGG - chr5_2:59141819-59141838 None:intergenic 45.0%
ACACTCACTTCAGTCATCTG+AGG - chr5_2:59141831-59141850 None:intergenic 45.0%
GGGTATGGAGGAAGTGAAAG+AGG - chr5_2:59140893-59140912 None:intergenic 50.0%
TTCACTTCCTCCATACCCTG+AGG + chr5_2:59140895-59140914 Msa0778600:CDS 50.0%
! AGGGGGTGTGAATTACCTCA+GGG - chr5_2:59140913-59140932 None:intergenic 50.0%
! TAGGGGGTGTGAATTACCTC+AGG - chr5_2:59140914-59140933 None:intergenic 50.0%
!! CCTCTCTTTGGTGGTGCATT+TGG - chr5_2:59141489-59141508 None:intergenic 50.0%
CCAAATGCACCACCAAAGAG+AGG + chr5_2:59141486-59141505 Msa0778600:CDS 50.0%
TGGAAGACCACCAAAGCCAA+AGG + chr5_2:59141512-59141531 Msa0778600:CDS 50.0%
! GCCAATGGATCCTTTGGCTT+TGG - chr5_2:59141525-59141544 None:intergenic 50.0%
TCCACTTGAAGCAGCCTTAG+GGG - chr5_2:59141625-59141644 None:intergenic 50.0%
CTTCCACTTGAAGCAGCCTT+AGG - chr5_2:59141627-59141646 None:intergenic 50.0%
AAGGCTGCTTCAAGTGGAAG+AGG + chr5_2:59141627-59141646 Msa0778600:CDS 50.0%
CTGCTTCAAGTGGAAGAGGA+AGG + chr5_2:59141631-59141650 Msa0778600:CDS 50.0%
GCTTCAAGTGGAAGAGGAAG+GGG + chr5_2:59141633-59141652 Msa0778600:CDS 50.0%
ACAGCAACAGCAGCAACACT+TGG - chr5_2:59141762-59141781 None:intergenic 50.0%
CTTCCCCTTCCACTAGTAGT+TGG - chr5_2:59141786-59141805 None:intergenic 50.0%
CAACTACTAGTGGAAGGGGA+AGG + chr5_2:59141784-59141803 Msa0778600:CDS 50.0%
ACTACTAGTGGAAGGGGAAG+GGG + chr5_2:59141786-59141805 Msa0778600:CDS 50.0%
GGGTATGGAGGAAGTGAAAG+AGG - chr5_2:59140893-59140912 None:intergenic 50.0%
TTCACTTCCTCCATACCCTG+AGG + chr5_2:59140895-59140914 Msa0778600:CDS 50.0%
! AGGGGGTGTGAATTACCTCA+GGG - chr5_2:59140913-59140932 None:intergenic 50.0%
! TAGGGGGTGTGAATTACCTC+AGG - chr5_2:59140914-59140933 None:intergenic 50.0%
!! CCTCTCTTTGGTGGTGCATT+TGG - chr5_2:59141489-59141508 None:intergenic 50.0%
CCAAATGCACCACCAAAGAG+AGG + chr5_2:59141486-59141505 Msa0778600:CDS 50.0%
TGGAAGACCACCAAAGCCAA+AGG + chr5_2:59141512-59141531 Msa0778600:CDS 50.0%
! GCCAATGGATCCTTTGGCTT+TGG - chr5_2:59141525-59141544 None:intergenic 50.0%
TCCACTTGAAGCAGCCTTAG+GGG - chr5_2:59141625-59141644 None:intergenic 50.0%
CTTCCACTTGAAGCAGCCTT+AGG - chr5_2:59141627-59141646 None:intergenic 50.0%
AAGGCTGCTTCAAGTGGAAG+AGG + chr5_2:59141627-59141646 Msa0778600:CDS 50.0%
CTGCTTCAAGTGGAAGAGGA+AGG + chr5_2:59141631-59141650 Msa0778600:CDS 50.0%
GCTTCAAGTGGAAGAGGAAG+GGG + chr5_2:59141633-59141652 Msa0778600:CDS 50.0%
ACAGCAACAGCAGCAACACT+TGG - chr5_2:59141762-59141781 None:intergenic 50.0%
CTTCCCCTTCCACTAGTAGT+TGG - chr5_2:59141786-59141805 None:intergenic 50.0%
CAACTACTAGTGGAAGGGGA+AGG + chr5_2:59141784-59141803 Msa0778600:CDS 50.0%
ACTACTAGTGGAAGGGGAAG+GGG + chr5_2:59141786-59141805 Msa0778600:CDS 50.0%
CTTCCACGTCCTCTCTTTGG+TGG - chr5_2:59141498-59141517 None:intergenic 55.0%
GGTCTTCCACGTCCTCTCTT+TGG - chr5_2:59141501-59141520 None:intergenic 55.0%
GGTGGAGCCAATGGATCCTT+TGG - chr5_2:59141531-59141550 None:intergenic 55.0%
TCCTTAGGAGGACGACCTCT+TGG - chr5_2:59141582-59141601 None:intergenic 55.0%
GGTGCATTAGGGTCCTTAGG+AGG - chr5_2:59141594-59141613 None:intergenic 55.0%
! GGAGGTGCATTAGGGTCCTT+AGG - chr5_2:59141597-59141616 None:intergenic 55.0%
! GGGTCTTGGGAGGTGCATTA+GGG - chr5_2:59141605-59141624 None:intergenic 55.0%
GAAGCAGCCTTAGGGGTCTT+GGG - chr5_2:59141618-59141637 None:intergenic 55.0%
TGAAGCAGCCTTAGGGGTCT+TGG - chr5_2:59141619-59141638 None:intergenic 55.0%
ACCCCTAAGGCTGCTTCAAG+TGG + chr5_2:59141621-59141640 Msa0778600:CDS 55.0%
CAAGTGGAAGAGGAAGGGGT+AGG + chr5_2:59141637-59141656 Msa0778600:CDS 55.0%
AGGAAGGGGTAGGCCAAAGA+AGG + chr5_2:59141647-59141666 Msa0778600:CDS 55.0%
CTTCCACGTCCTCTCTTTGG+TGG - chr5_2:59141498-59141517 None:intergenic 55.0%
GGTCTTCCACGTCCTCTCTT+TGG - chr5_2:59141501-59141520 None:intergenic 55.0%
GGTGGAGCCAATGGATCCTT+TGG - chr5_2:59141531-59141550 None:intergenic 55.0%
TCCTTAGGAGGACGACCTCT+TGG - chr5_2:59141582-59141601 None:intergenic 55.0%
GGTGCATTAGGGTCCTTAGG+AGG - chr5_2:59141594-59141613 None:intergenic 55.0%
! GGAGGTGCATTAGGGTCCTT+AGG - chr5_2:59141597-59141616 None:intergenic 55.0%
! GGGTCTTGGGAGGTGCATTA+GGG - chr5_2:59141605-59141624 None:intergenic 55.0%
GAAGCAGCCTTAGGGGTCTT+GGG - chr5_2:59141618-59141637 None:intergenic 55.0%
TGAAGCAGCCTTAGGGGTCT+TGG - chr5_2:59141619-59141638 None:intergenic 55.0%
ACCCCTAAGGCTGCTTCAAG+TGG + chr5_2:59141621-59141640 Msa0778600:CDS 55.0%
CAAGTGGAAGAGGAAGGGGT+AGG + chr5_2:59141637-59141656 Msa0778600:CDS 55.0%
AGGAAGGGGTAGGCCAAAGA+AGG + chr5_2:59141647-59141666 Msa0778600:CDS 55.0%
GCACCACCAAAGAGAGGACG+TGG + chr5_2:59141492-59141511 Msa0778600:CDS 60.0%
GACAGAACAGCAGCTGGTGG+TGG - chr5_2:59141549-59141568 None:intergenic 60.0%
CTGCTGTTCTGTCCCCACCA+AGG + chr5_2:59141556-59141575 Msa0778600:CDS 60.0%
!! ACGACCTCTTGGCCTTGGTG+GGG - chr5_2:59141571-59141590 None:intergenic 60.0%
!! GACGACCTCTTGGCCTTGGT+GGG - chr5_2:59141572-59141591 None:intergenic 60.0%
GCCAAGAGGTCGTCCTCCTA+AGG + chr5_2:59141578-59141597 Msa0778600:CDS 60.0%
! GGGGTCTTGGGAGGTGCATT+AGG - chr5_2:59141606-59141625 None:intergenic 60.0%
TGCACCTCCCAAGACCCCTA+AGG + chr5_2:59141608-59141627 Msa0778600:CDS 60.0%
CCAGCACCATCTCCACCACT+TGG - chr5_2:59141699-59141718 None:intergenic 60.0%
! CCAAGTGGTGGAGATGGTGC+TGG + chr5_2:59141696-59141715 Msa0778600:CDS 60.0%
CTAGTGGAAGGGGAAGGGGT+AGG + chr5_2:59141790-59141809 Msa0778600:CDS 60.0%
GCACCACCAAAGAGAGGACG+TGG + chr5_2:59141492-59141511 Msa0778600:CDS 60.0%
GACAGAACAGCAGCTGGTGG+TGG - chr5_2:59141549-59141568 None:intergenic 60.0%
CTGCTGTTCTGTCCCCACCA+AGG + chr5_2:59141556-59141575 Msa0778600:CDS 60.0%
!! ACGACCTCTTGGCCTTGGTG+GGG - chr5_2:59141571-59141590 None:intergenic 60.0%
!! GACGACCTCTTGGCCTTGGT+GGG - chr5_2:59141572-59141591 None:intergenic 60.0%
GCCAAGAGGTCGTCCTCCTA+AGG + chr5_2:59141578-59141597 Msa0778600:CDS 60.0%
! GGGGTCTTGGGAGGTGCATT+AGG - chr5_2:59141606-59141625 None:intergenic 60.0%
TGCACCTCCCAAGACCCCTA+AGG + chr5_2:59141608-59141627 Msa0778600:CDS 60.0%
CCAGCACCATCTCCACCACT+TGG - chr5_2:59141699-59141718 None:intergenic 60.0%
! CCAAGTGGTGGAGATGGTGC+TGG + chr5_2:59141696-59141715 Msa0778600:CDS 60.0%
CTAGTGGAAGGGGAAGGGGT+AGG + chr5_2:59141790-59141809 Msa0778600:CDS 60.0%
!! GCAGCTGGTGGTGGAGCCAA+TGG - chr5_2:59141540-59141559 None:intergenic 65.0%
GGGGACAGAACAGCAGCTGG+TGG - chr5_2:59141552-59141571 None:intergenic 65.0%
GGTGGGGACAGAACAGCAGC+TGG - chr5_2:59141555-59141574 None:intergenic 65.0%
CTGTCCCCACCAAGGCCAAG+AGG + chr5_2:59141564-59141583 Msa0778600:CDS 65.0%
!! GGACGACCTCTTGGCCTTGG+TGG - chr5_2:59141573-59141592 None:intergenic 65.0%
GGAGGACGACCTCTTGGCCT+TGG - chr5_2:59141576-59141595 None:intergenic 65.0%
GCAGCCTTAGGGGTCTTGGG+AGG - chr5_2:59141615-59141634 None:intergenic 65.0%
!! TGGTGCTGCTGCTGCTGCTG+AGG + chr5_2:59141716-59141735 Msa0778600:CDS 65.0%
GGGAAGGGGTAGGCCTCCTA+AGG + chr5_2:59141800-59141819 Msa0778600:CDS 65.0%
!! GCAGCTGGTGGTGGAGCCAA+TGG - chr5_2:59141540-59141559 None:intergenic 65.0%
GGGGACAGAACAGCAGCTGG+TGG - chr5_2:59141552-59141571 None:intergenic 65.0%
GGTGGGGACAGAACAGCAGC+TGG - chr5_2:59141555-59141574 None:intergenic 65.0%
CTGTCCCCACCAAGGCCAAG+AGG + chr5_2:59141564-59141583 Msa0778600:CDS 65.0%
!! GGACGACCTCTTGGCCTTGG+TGG - chr5_2:59141573-59141592 None:intergenic 65.0%
GGAGGACGACCTCTTGGCCT+TGG - chr5_2:59141576-59141595 None:intergenic 65.0%
GCAGCCTTAGGGGTCTTGGG+AGG - chr5_2:59141615-59141634 None:intergenic 65.0%
!! TGGTGCTGCTGCTGCTGCTG+AGG + chr5_2:59141716-59141735 Msa0778600:CDS 65.0%
GGGAAGGGGTAGGCCTCCTA+AGG + chr5_2:59141800-59141819 Msa0778600:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 59140638 59142198 59140638 ID=Msa0778600;Name=Msa0778600
chr5_2 mRNA 59140638 59142198 59140638 ID=Msa0778600-mRNA-1;Parent=Msa0778600;Name=Msa0778600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=228|1|1|1|1|1|2|338|204
chr5_2 exon 59140638 59140916 59140638 ID=Msa0778600-mRNA-1:exon:17409;Parent=Msa0778600-mRNA-1
chr5_2 exon 59141297 59142198 59141297 ID=Msa0778600-mRNA-1:exon:17410;Parent=Msa0778600-mRNA-1
chr5_2 five_prime_UTR 59140638 59140865 59140638 ID=Msa0778600-mRNA-1:five_prime_utr;Parent=Msa0778600-mRNA-1
chr5_2 CDS 59140866 59140916 59140866 ID=Msa0778600-mRNA-1:cds;Parent=Msa0778600-mRNA-1
chr5_2 CDS 59141297 59141860 59141297 ID=Msa0778600-mRNA-1:cds;Parent=Msa0778600-mRNA-1
chr5_2 three_prime_UTR 59141861 59142198 59141861 ID=Msa0778600-mRNA-1:three_prime_utr;Parent=Msa0778600-mRNA-1
Gene Sequence

>Msa0778600

ATGGCTACTCAAGAGGTTAATAAGCCTCTTTCACTTCCTCCATACCCTGAGATGATTATGAAGGCACTGGAAGCACTGAATGAACCAAATGGTTCAAACAAATCATCAATTTCAAACTACATAGAATCAATCTATGGTGAATTACCAGAAGGCCATTCAATTGTTCTTGCAAATCACCTTAACCAGATGAAGGAAAATGGTGACCTTGTTTTTGCAAAGAACAACTACATGAAGCCTGATCCAAATGCACCACCAAAGAGAGGACGTGGAAGACCACCAAAGCCAAAGGATCCATTGGCTCCACCACCAGCTGCTGTTCTGTCCCCACCAAGGCCAAGAGGTCGTCCTCCTAAGGACCCTAATGCACCTCCCAAGACCCCTAAGGCTGCTTCAAGTGGAAGAGGAAGGGGTAGGCCAAAGAAGGTTCAAAGGACTGAGAATGTTTCAAATCCAAGTGGTGGAGATGGTGCTGGTGCTGCTGCTGCTGCTGAGGTTGATGATGATGATGCTGCTCCAAGTGTTGCTGCTGTTGCTGTTCCAACTACTAGTGGAAGGGGAAGGGGTAGGCCTCCTAAGGTTAAGCCTCAGATGACTGAAGTGAGTGTTGAATCATAG

Protein sequence

>Msa0778600

MATQEVNKPLSLPPYPEMIMKALEALNEPNGSNKSSISNYIESIYGELPEGHSIVLANHLNQMKENGDLVFAKNNYMKPDPNAPPKRGRGRPPKPKDPLAPPPAAVLSPPRPRGRPPKDPNAPPKTPKAASSGRGRGRPKKVQRTENVSNPSGGDGAGAAAAAEVDDDDAAPSVAAVAVPTTSGRGRGRPPKVKPQMTEVSVES*