AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0845560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0845560 MtrunA17_Chr5g0417111 85.744 961 83 5 1 960 1 908 0.0 1497
Msa0845560 MtrunA17_Chr8g0361681 59.446 397 133 7 579 960 452 835 3.28e-141 442
Msa0845560 MtrunA17_Chr7g0217181 43.925 428 203 9 551 960 336 744 3.76e-108 352
Msa0845560 MtrunA17_Chr8g0361691 55.621 169 65 3 712 871 1 168 8.39e-47 165
Msa0845560 MtrunA17_Chr4g0000281 31.250 336 175 13 649 960 121 424 2.94e-31 127
Msa0845560 MtrunA17_Chr8g0391071 30.888 259 152 7 717 960 315 561 1.28e-22 103
Msa0845560 MtrunA17_Chr6g0484451 29.956 227 138 7 649 868 305 517 9.72e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0845560 AT5G39785.1 41.106 416 199 12 574 960 207 605 7.47e-95 312
Msa0845560 AT5G39785.3 41.106 416 199 12 574 960 207 605 7.47e-95 312
Msa0845560 AT5G39785.5 41.106 416 199 12 574 960 207 605 7.47e-95 312
Msa0845560 AT5G39785.2 40.767 417 200 13 574 960 207 606 2.41e-92 306
Msa0845560 AT5G39785.4 38.776 441 199 13 574 960 207 630 2.94e-89 298
Msa0845560 AT1G69610.3 45.025 402 177 11 575 960 218 591 3.09e-87 291
Msa0845560 AT1G69610.2 45.025 402 177 11 575 960 263 636 1.14e-86 291
Msa0845560 AT1G69610.1 45.025 402 177 11 575 960 262 635 1.47e-86 291
Msa0845560 AT3G20260.1 29.129 333 196 10 649 960 123 436 5.54e-29 121
Msa0845560 AT1G73850.2 28.402 338 195 10 649 960 317 633 8.79e-26 114
Msa0845560 AT1G73850.1 28.402 338 195 10 649 960 317 633 8.79e-26 114
Msa0845560 AT3G01175.1 28.739 341 187 12 649 960 262 575 8.56e-22 101

Find 161 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTCTTCGTATGCATTT+TGG 0.103220 5_4:+24814091 None:intergenic
AGTTTGGTTGGATTTGATTA+TGG 0.167143 5_4:-24815468 Msa0845560:five_prime_UTR
GATGATAAAGTTTCAAAATT+TGG 0.171216 5_4:-24813733 Msa0845560:CDS
GTTCGAACAGATAAAGAAAA+TGG 0.172724 5_4:-24811412 Msa0845560:CDS
TTTGAAGCATAATTTGTATT+TGG 0.174654 5_4:+24815649 None:intergenic
CCATTTGAGATGGTGGATTT+TGG 0.181688 5_4:+24812550 None:intergenic
CTTCATGTTCCAGCTATTAA+AGG 0.195836 5_4:-24812202 Msa0845560:intron
GTTGATCCTCATGGTGCTTT+TGG 0.199273 5_4:+24810484 None:intergenic
CTTTATCATCAAATGAAAAT+TGG 0.208295 5_4:+24813746 None:intergenic
TTTAAAAGATCATGAGATTA+AGG 0.248739 5_4:-24814385 Msa0845560:CDS
AAGAATCAATGCGTGTGTTT+TGG 0.250995 5_4:-24811441 Msa0845560:CDS
TGTTTCAGGTTTCTTAAATT+AGG 0.252942 5_4:-24815185 Msa0845560:intron
CATCATAGTTATCTAATAAA+TGG 0.276814 5_4:-24810151 Msa0845560:three_prime_UTR
GAAGAAACAGAACAAGAAAC+AGG 0.279850 5_4:-24814270 Msa0845560:CDS
TTTAATTCTTCAACCACTTT+TGG 0.284097 5_4:+24813400 None:intergenic
AATAGATGAAAATGAGAAAA+TGG 0.284130 5_4:-24814424 Msa0845560:CDS
GTTTGGTTGGATTTGATTAT+GGG 0.300673 5_4:-24815467 Msa0845560:five_prime_UTR
TTATTCCACAAGTTGGAAAA+AGG 0.303261 5_4:-24815622 Msa0845560:five_prime_UTR
CTAAATTGGTTGAATCAATA+TGG 0.311123 5_4:+24810294 None:intergenic
TCCATACTCTAACTTGGTTA+TGG 0.317119 5_4:-24815528 Msa0845560:five_prime_UTR
CTAGTTCAAGTGGTTTAATC+TGG 0.318389 5_4:-24813885 Msa0845560:CDS
TCCATAACCAAGTTAGAGTA+TGG 0.323571 5_4:+24815527 None:intergenic
TCATCAACTTCATATAGATT+TGG 0.328013 5_4:-24812458 Msa0845560:CDS
GTTAGAGTATGGAGAAGAAA+TGG 0.330475 5_4:+24815538 None:intergenic
AAATGGCAAGAGAAATTAAA+AGG 0.333084 5_4:-24810134 Msa0845560:three_prime_UTR
AATGTTATTTCTAAGCAAAT+TGG 0.334163 5_4:-24811382 Msa0845560:CDS
TTTCATGATTTCAAGGTTGA+TGG 0.335926 5_4:-24815107 Msa0845560:CDS
TCCTGAATGTATCAACTTCA+TGG 0.336668 5_4:+24810025 None:intergenic
AATTATGTGTTCTATTCATT+TGG 0.341860 5_4:-24815318 Msa0845560:CDS
TCATGATGATGGTAAGAAAA+TGG 0.346383 5_4:-24814361 Msa0845560:CDS
CAAATAGGTAAACTGCCTAA+TGG 0.353262 5_4:-24815876 Msa0845560:five_prime_UTR
GGTATTGAAATTAATTTAAG+AGG 0.353651 5_4:+24812571 None:intergenic
TGCAACCTTCCACTTGCAAT+TGG 0.357673 5_4:+24811475 None:intergenic
TCCATGAAGTTGATACATTC+AGG 0.358496 5_4:-24810026 Msa0845560:three_prime_UTR
ACCTATTTGTTCACTTAACT+TGG 0.359962 5_4:+24815890 None:intergenic
CGCTTTGAGAGCGAGGTGTT+TGG 0.371344 5_4:-24813985 Msa0845560:CDS
AGATGAAGGAATAGAAGGTT+TGG 0.378666 5_4:-24813776 Msa0845560:CDS
TTTGCTACCAAGAAACTCAT+AGG 0.381015 5_4:+24813831 None:intergenic
AATTCACCGTCACAATCATT+AGG 0.383506 5_4:-24815140 Msa0845560:CDS
TAAAGAATCGTTGTGTGATT+AGG 0.384028 5_4:-24812231 Msa0845560:CDS
ACTAGAAGGTTTGAAATTGC+AGG 0.392608 5_4:+24811343 None:intergenic
GATGAATTTGTTCAAGAAGA+TGG 0.396227 5_4:-24814846 Msa0845560:CDS
AAATAGGTAAACTGCCTAAT+GGG 0.398325 5_4:-24815875 Msa0845560:five_prime_UTR
ACTTCATATAGATTTGGAAT+TGG 0.398632 5_4:-24812452 Msa0845560:CDS
AAAAGATATAAGTTGCTTTG+TGG 0.399117 5_4:-24814181 Msa0845560:CDS
GAAGATGGAGGAAAATTTGA+TGG 0.400416 5_4:-24814630 Msa0845560:CDS
GATTTGGAATTGGTATATGT+TGG 0.401399 5_4:-24812442 Msa0845560:CDS
TTTACATAATTCTGAATCCT+TGG 0.404409 5_4:+24812250 None:intergenic
ATGAGAGATGAAGGAATAGA+AGG 0.410576 5_4:-24813781 Msa0845560:CDS
AAAGATCTTATTCCACAAGT+TGG 0.415099 5_4:-24815629 Msa0845560:five_prime_UTR
AAGTTGATACATTCAGGAAT+GGG 0.417379 5_4:-24810020 Msa0845560:three_prime_UTR
AATACTGATTGATTCCCATT+AGG 0.419183 5_4:+24815861 None:intergenic
TCTTGTGTGGCATACAAGTT+TGG 0.421420 5_4:-24810100 Msa0845560:three_prime_UTR
TCAACTTGATCATGAGCAAT+TGG 0.421810 5_4:-24810466 Msa0845560:CDS
AGCTTCACTTCAATCTTCAA+TGG 0.422108 5_4:+24813376 None:intergenic
CATAGGTATAACCATGTTGC+TGG 0.424551 5_4:-24812337 Msa0845560:CDS
TATCAAACCATGCATGCATT+AGG 0.425507 5_4:-24813271 Msa0845560:intron
GATTCTTAGATGATAGTAAA+GGG 0.426605 5_4:-24811510 Msa0845560:intron
TGAGAAAAGAACAAGTACTA+TGG 0.427979 5_4:-24810392 Msa0845560:CDS
GTATTCGAATGTCCACTAGA+AGG 0.428041 5_4:+24811329 None:intergenic
CCAAAATCCACCATCTCAAA+TGG 0.430562 5_4:-24812550 Msa0845560:CDS
AAACTGAATCGCAATGTTGT+TGG 0.431487 5_4:+24814153 None:intergenic
TCCAAGTTAAGTGAACAAAT+AGG 0.431689 5_4:-24815891 Msa0845560:five_prime_UTR
TTGGGTTGCGATTGATTTCA+AGG 0.431841 5_4:-24810434 Msa0845560:CDS
CTTAAGGACATAGTAAGAAC+TGG 0.431997 5_4:-24810528 Msa0845560:CDS
TTGGACAAATTTGCCTCTCA+TGG 0.432910 5_4:-24812423 Msa0845560:CDS
ATCCTTGGTCCACCTTGAAA+TGG 0.434484 5_4:+24812265 None:intergenic
AACTCTAATGTTCATGAAGA+TGG 0.434844 5_4:-24814645 Msa0845560:CDS
AAAGATGAAAAGGAAATAGA+AGG 0.441294 5_4:-24814552 Msa0845560:CDS
ATAAAATGATATACTAGCTT+AGG 0.442507 5_4:-24810249 Msa0845560:three_prime_UTR
TTCTACTTCTTCTATGATTG+TGG 0.448987 5_4:+24813477 None:intergenic
ATGACTCACAAAAGTCTCAT+AGG 0.450321 5_4:-24812354 Msa0845560:CDS
GCTAGAATTCAATGATCAAA+TGG 0.452356 5_4:-24813356 Msa0845560:CDS
TGGGAAACGGTTGAAACATC+AGG 0.458060 5_4:+24814111 None:intergenic
TTCTTCTCCATACTCTAACT+TGG 0.460502 5_4:-24815534 Msa0845560:five_prime_UTR
CATTCGAATACAACTACAAA+AGG 0.463325 5_4:-24811317 Msa0845560:intron
GTGTGGCATACAAGTTTGGC+TGG 0.466450 5_4:-24810096 Msa0845560:three_prime_UTR
TTCGAACAGATAAAGAAAAT+GGG 0.468460 5_4:-24811411 Msa0845560:CDS
ATAGAGAATGAGCCATTTCA+AGG 0.469644 5_4:-24812277 Msa0845560:CDS
GAATAATCTCTCAAAATTTG+TGG 0.472353 5_4:-24812528 Msa0845560:CDS
AAATGAGAAAATGGATATAG+AGG 0.472396 5_4:-24814415 Msa0845560:CDS
ATTTCAATTTCATGAACAGT+TGG 0.477035 5_4:+24814771 None:intergenic
AGCAATTGGTTGCTCAAGTT+GGG 0.477639 5_4:-24810452 Msa0845560:CDS
AATATGTCACCTTTAATAGC+TGG 0.480683 5_4:+24812193 None:intergenic
CTTTCATGTGTAGCCAACAT+AGG 0.483006 5_4:+24812395 None:intergenic
GAGCAATTGGTTGCTCAAGT+TGG 0.485402 5_4:-24810453 Msa0845560:CDS
TTCAAAATTTGGAGTTGATG+AGG 0.486316 5_4:-24813722 Msa0845560:CDS
AAAAGTGAAGAGGAATTGAA+TGG 0.487614 5_4:-24813595 Msa0845560:CDS
GTCTCTGATGTTACTGAAGA+TGG 0.488309 5_4:-24814453 Msa0845560:CDS
AATGAGAATGTAAATGAAGA+TGG 0.489169 5_4:-24814582 Msa0845560:CDS
TTCAAAACCATGTTCTTCAA+AGG 0.489333 5_4:+24813645 None:intergenic
AACCATTCATAGTGGAAAAG+TGG 0.489671 5_4:+24815596 None:intergenic
GATTATTCCATTTGAGATGG+TGG 0.492227 5_4:+24812543 None:intergenic
ATCAAATCAACCATTCATAG+TGG 0.512972 5_4:+24815588 None:intergenic
AACAGTTGGATGATTCTCAA+TGG 0.513251 5_4:+24814785 None:intergenic
TCATACTCAGATTCTTCTTG+AGG 0.513731 5_4:-24815293 Msa0845560:intron
AATGTATCAACTTCATGGAA+TGG 0.515115 5_4:+24810030 None:intergenic
GAAGTTGATACATTCAGGAA+TGG 0.517747 5_4:-24810021 Msa0845560:three_prime_UTR
TTAGAGTATGGAGAAGAAAT+GGG 0.518320 5_4:+24815539 None:intergenic
ATGGGAACATGAAGAAATAG+TGG 0.519070 5_4:-24813545 Msa0845560:CDS
AAAATCTTCTCCTACAATCT+CGG 0.520935 5_4:-24815684 Msa0845560:five_prime_UTR
GAGTCTAAGCTTCATGAAGA+TGG 0.521287 5_4:-24814510 Msa0845560:CDS
AGAAGTGGAACCTCATATGA+AGG 0.522739 5_4:-24813677 Msa0845560:CDS
TGATTCTTAGATGATAGTAA+AGG 0.525864 5_4:-24811511 Msa0845560:intron
TTTGAGAGCGAGGTGTTTGG+TGG 0.527279 5_4:-24813982 Msa0845560:CDS
GTTCTCACCTAATGCATGCA+TGG 0.527529 5_4:+24813264 None:intergenic
TGCAATTTCAAACCTTCTAG+TGG 0.527719 5_4:-24811341 Msa0845560:CDS
AGAGATTATTCCATTTGAGA+TGG 0.527855 5_4:+24812540 None:intergenic
GAGATTAAGGTTCATGATGA+TGG 0.532953 5_4:-24814372 Msa0845560:CDS
TAATAGCTGGAACATGAAGC+AGG 0.539080 5_4:+24812206 None:intergenic
GTATTGAAATTAATTTAAGA+GGG 0.545143 5_4:+24812572 None:intergenic
TGGACAAATTTGCCTCTCAT+GGG 0.546353 5_4:-24812422 Msa0845560:CDS
AGAGCTATGCAGAGAAAATG+AGG 0.547615 5_4:-24813312 Msa0845560:CDS
TGTTCAAGAAGATGGCGGTA+AGG 0.548460 5_4:-24814838 Msa0845560:CDS
TCAGAATCATCTAGTTCAAG+TGG 0.552751 5_4:-24813895 Msa0845560:CDS
TCCACATCGCTTTGAGAGCG+AGG 0.553578 5_4:-24813992 Msa0845560:CDS
AATGGATGAAATTGAAACAA+GGG 0.554219 5_4:-24814343 Msa0845560:CDS
TGAAAATGAGTATATAGAAG+TGG 0.556429 5_4:-24813692 Msa0845560:CDS
AAGTTGATGATGAGAGATGA+AGG 0.557662 5_4:-24813790 Msa0845560:CDS
TTGAAAACCTTTGAAGAACA+TGG 0.559839 5_4:-24813652 Msa0845560:CDS
AGGTATGAAGAAAAGTGAAG+AGG 0.564125 5_4:-24813605 Msa0845560:CDS
CTAGAAGGTTTGAAATTGCA+GGG 0.568663 5_4:+24811344 None:intergenic
TGGGTTGCGATTGATTTCAA+GGG 0.577928 5_4:-24810433 Msa0845560:CDS
AAATGGATGAAATTGAAACA+AGG 0.579960 5_4:-24814344 Msa0845560:CDS
TGGCGGTAAGGAAAATGAAG+AGG 0.580009 5_4:-24814826 Msa0845560:CDS
CCGTCACAATCATTAGGTGA+TGG 0.582625 5_4:-24815134 Msa0845560:CDS
AAGAAACAGAACAAGAAACA+GGG 0.583902 5_4:-24814269 Msa0845560:CDS
TCTCATGGGAAATCCTATGT+TGG 0.587870 5_4:-24812408 Msa0845560:CDS
TTTATGATCATGAACATCGA+AGG 0.588444 5_4:+24814299 None:intergenic
ATTCTTAGATGATAGTAAAG+GGG 0.591259 5_4:-24811509 Msa0845560:intron
AATAAGAGAGCATATCATAG+TGG 0.591550 5_4:-24814673 Msa0845560:CDS
AGGATCCAATTGCAAGTGGA+AGG 0.591596 5_4:-24811480 Msa0845560:CDS
AACATAGGATTTCCCATGAG+AGG 0.593117 5_4:+24812410 None:intergenic
TGTGAAAACAGAGATATATG+TGG 0.593704 5_4:-24814934 Msa0845560:CDS
TACTTAAGGAAACTCTACAT+TGG 0.597866 5_4:-24815426 Msa0845560:five_prime_UTR
GAAGTGGAACCTCATATGAA+GGG 0.601584 5_4:-24813676 Msa0845560:CDS
CCATCACCTAATGATTGTGA+CGG 0.601937 5_4:+24815134 None:intergenic
GAGTGTGAAATACATGAAGA+GGG 0.604673 5_4:-24814888 Msa0845560:CDS
GGTAAGGAAAATGAAGAGGT+AGG 0.605055 5_4:-24814822 Msa0845560:CDS
CATGATCAAGTTGATCCTCA+TGG 0.607491 5_4:+24810475 None:intergenic
ACCTCGCTCTCAAAGCGATG+TGG 0.608095 5_4:+24813991 None:intergenic
GTTGCGATTGATTTCAAGGG+TGG 0.608906 5_4:-24810430 Msa0845560:CDS
AAGCAGGAAGATTGTCCATG+TGG 0.609998 5_4:-24810337 Msa0845560:CDS
TTCTTAGATGATAGTAAAGG+GGG 0.611926 5_4:-24811508 Msa0845560:intron
GAGGAGGATCCAATTGCAAG+TGG 0.618801 5_4:-24811484 Msa0845560:CDS
AAAATGAAGAGGTAGGTGAA+AGG 0.619923 5_4:-24814815 Msa0845560:CDS
AGCCATTTCAAGGTGGACCA+AGG 0.623624 5_4:-24812267 Msa0845560:CDS
TCTAATGTTCATGAAGATGG+AGG 0.627681 5_4:-24814642 Msa0845560:CDS
TGAGTGTGAAATACATGAAG+AGG 0.633059 5_4:-24814889 Msa0845560:CDS
ATAACTATGATGTATGAGCA+AGG 0.637372 5_4:+24810162 None:intergenic
GAAGTATTCATACCTACTAG+TGG 0.638361 5_4:+24814209 None:intergenic
AGTTGATACATTCAGGAATG+GGG 0.641759 5_4:-24810019 Msa0845560:three_prime_UTR
CTCAAAGCGATGTGGAACAT+CGG 0.642227 5_4:+24813999 None:intergenic
GTTGAAACTCACCAGCAACA+TGG 0.660906 5_4:+24812326 None:intergenic
AGAAACAGAACAAGAAACAG+GGG 0.662289 5_4:-24814268 Msa0845560:CDS
TTGAAGAATTCAAGACAAGG+AGG 0.678769 5_4:-24813505 Msa0845560:CDS
GAATTTGTTCAAGAAGATGG+CGG 0.685285 5_4:-24814843 Msa0845560:CDS
GGTAGTGCAATGTTCTTGTG+TGG 0.712186 5_4:-24810113 Msa0845560:three_prime_UTR
GAGAATGAGCCATTTCAAGG+TGG 0.715727 5_4:-24812274 Msa0845560:CDS
GAATTGAAGAATTCAAGACA+AGG 0.716020 5_4:-24813508 Msa0845560:CDS
GAAGTTCCAAAAGCACCATG+AGG 0.719374 5_4:-24810490 Msa0845560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTGATAAGATATTTT+AGG + chr5_4:24813731-24813750 None:intergenic 10.0%
!! TAAATTTAGTATGTAAAAAA+AGG + chr5_4:24814233-24814252 None:intergenic 10.0%
!!! TTTTACATACTAAATTTAAT+AGG - chr5_4:24814235-24814254 Msa0845560:CDS 10.0%
!!! ATAATCTTTTTTCAAAAGTT+TGG - chr5_4:24810384-24810403 Msa0845560:CDS 15.0%
!! TTTATTATATATAAAGTGCA+TGG - chr5_4:24810635-24810654 Msa0845560:intron 15.0%
!! CATAATTAGTAAAATATGTT+GGG + chr5_4:24812932-24812951 None:intergenic 15.0%
!! ACATAATTAGTAAAATATGT+TGG + chr5_4:24812933-24812952 None:intergenic 15.0%
!! AAATAAACAAGATATCTTTA+TGG + chr5_4:24812958-24812977 None:intergenic 15.0%
!! AATTAGTCATAATAATCAAA+TGG + chr5_4:24813231-24813250 None:intergenic 15.0%
!! GTATTGAAATTAATTTAAGA+GGG + chr5_4:24813299-24813318 None:intergenic 15.0%
!! ATAATTTATAAGAGTAACTA+TGG - chr5_4:24813792-24813811 Msa0845560:CDS 15.0%
!!! TTAATAGGAGAATATTTTAT+AGG - chr5_4:24814250-24814269 Msa0845560:CDS 15.0%
!!! CTTAATTGTGTTTTTTTTTT+TGG - chr5_4:24814620-24814639 Msa0845560:CDS 15.0%
!!! ATTTTACAAATTGATTTTAG+TGG - chr5_4:24814713-24814732 Msa0845560:CDS 15.0%
!! TCTCAAATATTTATAACAAA+TGG + chr5_4:24814948-24814967 None:intergenic 15.0%
!!! TTTTTAGAAACTTATTTTCT+TGG - chr5_4:24815066-24815085 Msa0845560:CDS 15.0%
!!! AAAAAAGTATATCTCTAAAT+TGG + chr5_4:24815591-24815610 None:intergenic 15.0%
!!! TTTGAAGCATAATTTGTATT+TGG + chr5_4:24810222-24810241 None:intergenic 20.0%
!! AATTATGTGTTCTATTCATT+TGG - chr5_4:24810550-24810569 Msa0845560:intron 20.0%
!!! TGTTTTGTTTATTTTGTTTC+AGG - chr5_4:24810669-24810688 Msa0845560:intron 20.0%
!!! ATTTGTCTAATTTCCTTTTT+TGG - chr5_4:24810795-24810814 Msa0845560:intron 20.0%
!! AATAGATGAAAATGAGAAAA+TGG - chr5_4:24811444-24811463 Msa0845560:CDS 20.0%
!! TTTAAAAGATCATGAGATTA+AGG - chr5_4:24811483-24811502 Msa0845560:CDS 20.0%
!! CTTTATCATCAAATGAAAAT+TGG + chr5_4:24812125-24812144 None:intergenic 20.0%
!! GATGATAAAGTTTCAAAATT+TGG - chr5_4:24812135-24812154 Msa0845560:intron 20.0%
!! AGCATATAATAAAGTTAAGT+AGG - chr5_4:24813144-24813163 Msa0845560:intron 20.0%
!!! GGTATTGAAATTAATTTAAG+AGG + chr5_4:24813300-24813319 None:intergenic 20.0%
!!! GATGAACAAGTTTTAAAAAT+GGG + chr5_4:24813395-24813414 None:intergenic 20.0%
!!! TGATGAACAAGTTTTAAAAA+TGG + chr5_4:24813396-24813415 None:intergenic 20.0%
!!! CAAATGATTTTTCTCTATAT+TGG + chr5_4:24813887-24813906 None:intergenic 20.0%
!!! AATGTTATTTCTAAGCAAAT+TGG - chr5_4:24814486-24814505 Msa0845560:CDS 20.0%
!!! TTAGAATTGAATTGATTCTA+AGG - chr5_4:24814742-24814761 Msa0845560:CDS 20.0%
!!! TTTCCATTAAACACATTTTA+AGG + chr5_4:24814793-24814812 None:intergenic 20.0%
!!! ATTTTATAAGTCAGTTTTGT+AGG - chr5_4:24814822-24814841 Msa0845560:CDS 20.0%
!!! TTTTCGGAATCTTAAAAAAA+TGG - chr5_4:24815018-24815037 Msa0845560:CDS 20.0%
!!! AATTTTTTTGCTCTTTAAGA+GGG + chr5_4:24815191-24815210 None:intergenic 20.0%
!!! ATAAAATGATATACTAGCTT+AGG - chr5_4:24815619-24815638 Msa0845560:five_prime_UTR 20.0%
!! CATCATAGTTATCTAATAAA+TGG - chr5_4:24815717-24815736 Msa0845560:five_prime_UTR 20.0%
!!! GATAGTGTATAATTTTAGAT+AGG - chr5_4:24815884-24815903 Msa0845560:five_prime_UTR 20.0%
!!! TGTATAATTTTAGATAGGAA+TGG - chr5_4:24815889-24815908 Msa0845560:five_prime_UTR 20.0%
!!! AGATTTTGATTTGTATGACT+TGG + chr5_4:24810099-24810118 None:intergenic 25.0%
!! ACTTGGTTATGGAAATTTTA+TGG - chr5_4:24810351-24810370 Msa0845560:CDS 25.0%
!! CTTGGTTATGGAAATTTTAT+GGG - chr5_4:24810352-24810371 Msa0845560:CDS 25.0%
!!! TCTTTTTTCAAAAGTTTGGT+TGG - chr5_4:24810388-24810407 Msa0845560:CDS 25.0%
!!! AAGACCATTTTTCATACTTA+AGG - chr5_4:24810428-24810447 Msa0845560:CDS 25.0%
! GTTTCCTTAAGTATGAAAAA+TGG + chr5_4:24810435-24810454 None:intergenic 25.0%
!!! TTTGAATTTTGTTTCTGTGA+GGG - chr5_4:24810516-24810535 Msa0845560:CDS 25.0%
!!! GAATTTTGTTTTGCTTTTTG+AGG - chr5_4:24810604-24810623 Msa0845560:intron 25.0%
!!! TGTTTCAGGTTTCTTAAATT+AGG - chr5_4:24810683-24810702 Msa0845560:intron 25.0%
!! TGGAAATTTTCATGATTTCA+AGG - chr5_4:24810754-24810773 Msa0845560:intron 25.0%
! ATTTCAATTTCATGAACAGT+TGG + chr5_4:24811100-24811119 None:intergenic 25.0%
! AATGAGAATGTAAATGAAGA+TGG - chr5_4:24811286-24811305 Msa0845560:intron 25.0%
! TGGTATGAAAAAAGATGAAA+AGG - chr5_4:24811306-24811325 Msa0845560:intron 25.0%
! AAAGATGAAAAGGAAATAGA+AGG - chr5_4:24811316-24811335 Msa0845560:intron 25.0%
! AAATGAGAAAATGGATATAG+AGG - chr5_4:24811453-24811472 Msa0845560:CDS 25.0%
! AAATGGATGAAATTGAAACA+AGG - chr5_4:24811524-24811543 Msa0845560:intron 25.0%
! AATGGATGAAATTGAAACAA+GGG - chr5_4:24811525-24811544 Msa0845560:intron 25.0%
!! AAAAGATATAAGTTGCTTTG+TGG - chr5_4:24811687-24811706 Msa0845560:intron 25.0%
! TGAAAATGAGTATATAGAAG+TGG - chr5_4:24812176-24812195 Msa0845560:intron 25.0%
!! TGATGAAGATGATTTTGAAT+GGG - chr5_4:24812305-24812324 Msa0845560:CDS 25.0%
!! TTTAATTCTTCAACCACTTT+TGG + chr5_4:24812471-24812490 None:intergenic 25.0%
! TGACTTCAATCTACAATATT+TGG + chr5_4:24812763-24812782 None:intergenic 25.0%
!! ATCTTTTTCCTATTCTTCAT+AGG - chr5_4:24813044-24813063 Msa0845560:intron 25.0%
! AGGTCTACTTTATATACTAA+AGG - chr5_4:24813064-24813083 Msa0845560:intron 25.0%
! GAATAATCTCTCAAAATTTG+TGG - chr5_4:24813340-24813359 Msa0845560:CDS 25.0%
! TCATCAACTTCATATAGATT+TGG - chr5_4:24813410-24813429 Msa0845560:CDS 25.0%
!! ACTTCATATAGATTTGGAAT+TGG - chr5_4:24813416-24813435 Msa0845560:CDS 25.0%
!!! TTTTTCAAGTATTGATGCAA+AGG - chr5_4:24813565-24813584 Msa0845560:CDS 25.0%
! TTTACATAATTCTGAATCCT+TGG + chr5_4:24813621-24813640 None:intergenic 25.0%
! TATGATCACTGTATAATGTA+CGG + chr5_4:24814140-24814159 None:intergenic 25.0%
! TGATTCTTAGATGATAGTAA+AGG - chr5_4:24814357-24814376 Msa0845560:CDS 25.0%
! GATTCTTAGATGATAGTAAA+GGG - chr5_4:24814358-24814377 Msa0845560:CDS 25.0%
! ATTCTTAGATGATAGTAAAG+GGG - chr5_4:24814359-24814378 Msa0845560:CDS 25.0%
! TTCGAACAGATAAAGAAAAT+GGG - chr5_4:24814457-24814476 Msa0845560:CDS 25.0%
! AGTGTAAACATAAAAAGTGA+TGG + chr5_4:24814593-24814612 None:intergenic 25.0%
! TGACCTTAAAATGTGTTTAA+TGG - chr5_4:24814787-24814806 Msa0845560:CDS 25.0%
! ACTAAACAGATTATGTTTAG+CGG - chr5_4:24814985-24815004 Msa0845560:CDS 25.0%
!!! CAATTTTTTTGCTCTTTAAG+AGG + chr5_4:24815192-24815211 None:intergenic 25.0%
!! TTGTTTTCACCTTAAAAATC+AGG + chr5_4:24815247-24815266 None:intergenic 25.0%
! TCCTGCTTAAAAATTTGATT+CGG + chr5_4:24815519-24815538 None:intergenic 25.0%
! TATGGAAAAAGCAAAAAAGA+AGG + chr5_4:24815559-24815578 None:intergenic 25.0%
! CTAAATTGGTTGAATCAATA+TGG + chr5_4:24815577-24815596 None:intergenic 25.0%
! AAATGGCAAGAGAAATTAAA+AGG - chr5_4:24815734-24815753 Msa0845560:five_prime_UTR 25.0%
TCCAAGTTAAGTGAACAAAT+AGG - chr5_4:24809977-24809996 Msa0845560:three_prime_UTR 30.0%
ACCTATTTGTTCACTTAACT+TGG + chr5_4:24809981-24810000 None:intergenic 30.0%
AAATAGGTAAACTGCCTAAT+GGG - chr5_4:24809993-24810012 Msa0845560:three_prime_UTR 30.0%
! AATACTGATTGATTCCCATT+AGG + chr5_4:24810010-24810029 None:intergenic 30.0%
AAAATCTTCTCCTACAATCT+CGG - chr5_4:24810184-24810203 Msa0845560:three_prime_UTR 30.0%
CAAAAATAAACCGAGATTGT+AGG + chr5_4:24810197-24810216 None:intergenic 30.0%
!! CTACAATCTCGGTTTATTTT+TGG - chr5_4:24810195-24810214 Msa0845560:three_prime_UTR 30.0%
AAAGATCTTATTCCACAAGT+TGG - chr5_4:24810239-24810258 Msa0845560:three_prime_UTR 30.0%
! TTATTCCACAAGTTGGAAAA+AGG - chr5_4:24810246-24810265 Msa0845560:three_prime_UTR 30.0%
ATCAAATCAACCATTCATAG+TGG + chr5_4:24810283-24810302 None:intergenic 30.0%
TTAGAGTATGGAGAAGAAAT+GGG + chr5_4:24810332-24810351 None:intergenic 30.0%
AGTTTGGTTGGATTTGATTA+TGG - chr5_4:24810400-24810419 Msa0845560:CDS 30.0%
GTTTGGTTGGATTTGATTAT+GGG - chr5_4:24810401-24810420 Msa0845560:CDS 30.0%
TACTTAAGGAAACTCTACAT+TGG - chr5_4:24810442-24810461 Msa0845560:CDS 30.0%
!!! CTTTGAATTTTGTTTCTGTG+AGG - chr5_4:24810515-24810534 Msa0845560:CDS 30.0%
TTTCATGATTTCAAGGTTGA+TGG - chr5_4:24810761-24810780 Msa0845560:intron 30.0%
GAAAATCATCACTCCAAAAA+AGG + chr5_4:24810811-24810830 None:intergenic 30.0%
TGTGAAAACAGAGATATATG+TGG - chr5_4:24810934-24810953 Msa0845560:intron 30.0%
!!! TGTGGAGAGTATTTTATCAA+AGG - chr5_4:24810952-24810971 Msa0845560:intron 30.0%
! GATGAATTTGTTCAAGAAGA+TGG - chr5_4:24811022-24811041 Msa0845560:intron 30.0%
!!! AATGAAGAGTTTTGTTTGCT+TGG - chr5_4:24811117-24811136 Msa0845560:intron 30.0%
!!! AGTTTTGTTTGCTTGGAAAA+TGG - chr5_4:24811124-24811143 Msa0845560:intron 30.0%
! AATAAGAGAGCATATCATAG+TGG - chr5_4:24811195-24811214 Msa0845560:intron 30.0%
AACTCTAATGTTCATGAAGA+TGG - chr5_4:24811223-24811242 Msa0845560:intron 30.0%
!! AATAGAAGGCTCTGATTTTA+AGG - chr5_4:24811330-24811349 Msa0845560:CDS 30.0%
!! AACAAAGTACTCTGTTTTCA+TGG - chr5_4:24811387-24811406 Msa0845560:CDS 30.0%
!! TCATGATGATGGTAAGAAAA+TGG - chr5_4:24811507-24811526 Msa0845560:intron 30.0%
TTTATGATCATGAACATCGA+AGG + chr5_4:24811572-24811591 None:intergenic 30.0%
AAGAAACAGAACAAGAAACA+GGG - chr5_4:24811599-24811618 Msa0845560:intron 30.0%
CTATAAAAACAACCACTAGT+AGG - chr5_4:24811647-24811666 Msa0845560:intron 30.0%
! AAACTCTTCGTATGCATTTT+GGG + chr5_4:24811779-24811798 None:intergenic 30.0%
! AAAACTCTTCGTATGCATTT+TGG + chr5_4:24811780-24811799 None:intergenic 30.0%
TGAAGAACAACAAGAAAAAG+AGG - chr5_4:24811831-24811850 Msa0845560:intron 30.0%
! TCATTTTCCTATGAGTTTCT+TGG - chr5_4:24812030-24812049 Msa0845560:intron 30.0%
!! TTCAAAATTTGGAGTTGATG+AGG - chr5_4:24812146-24812165 Msa0845560:intron 30.0%
! TTGAAAACCTTTGAAGAACA+TGG - chr5_4:24812216-24812235 Msa0845560:CDS 30.0%
TTCAAAACCATGTTCTTCAA+AGG + chr5_4:24812226-24812245 None:intergenic 30.0%
GAAGTGAAAGATGAAAAAGA+AGG - chr5_4:24812243-24812262 Msa0845560:CDS 30.0%
AAAAGTGAAGAGGAATTGAA+TGG - chr5_4:24812273-24812292 Msa0845560:CDS 30.0%
! CTGATGAAGATGATTTTGAA+TGG - chr5_4:24812304-24812323 Msa0845560:CDS 30.0%
GAATTGAAGAATTCAAGACA+AGG - chr5_4:24812360-24812379 Msa0845560:CDS 30.0%
TTCTACTTCTTCTATGATTG+TGG + chr5_4:24812394-24812413 None:intergenic 30.0%
AGAAAAAGAATCACCAAAAG+TGG - chr5_4:24812455-24812474 Msa0845560:CDS 30.0%
GCTAGAATTCAATGATCAAA+TGG - chr5_4:24812512-24812531 Msa0845560:CDS 30.0%
!! GCTTAGATGCAATTTTAGTA+TGG - chr5_4:24812885-24812904 Msa0845560:intron 30.0%
!! TAGATGCAATTTTAGTATGG+TGG - chr5_4:24812888-24812907 Msa0845560:intron 30.0%
!! AGATGCAATTTTAGTATGGT+GGG - chr5_4:24812889-24812908 Msa0845560:intron 30.0%
! GTAGATTTGTCACTATTTCT+AGG + chr5_4:24812993-24813012 None:intergenic 30.0%
AAAGTAGACCTATGAAGAAT+AGG + chr5_4:24813055-24813074 None:intergenic 30.0%
AGAGATTATTCCATTTGAGA+TGG + chr5_4:24813331-24813350 None:intergenic 30.0%
!!! GTGATCTTTGTTGATTTTCT+TGG + chr5_4:24813366-24813385 None:intergenic 30.0%
! GATTTGGAATTGGTATATGT+TGG - chr5_4:24813426-24813445 Msa0845560:CDS 30.0%
TAAAGAATCGTTGTGTGATT+AGG - chr5_4:24813637-24813656 Msa0845560:CDS 30.0%
AATATGTCACCTTTAATAGC+TGG + chr5_4:24813678-24813697 None:intergenic 30.0%
!! TTACGAGTTTGGTGATTTTT+GGG + chr5_4:24813829-24813848 None:intergenic 30.0%
ACCATGTTTCTCAACATTAT+CGG + chr5_4:24813859-24813878 None:intergenic 30.0%
ATAATGTTGAGAAACATGGT+AGG - chr5_4:24813859-24813878 Msa0845560:CDS 30.0%
TAATGTTGAGAAACATGGTA+GGG - chr5_4:24813860-24813879 Msa0845560:CDS 30.0%
CATAAGACGCACTTTATATA+TGG - chr5_4:24813960-24813979 Msa0845560:CDS 30.0%
AGCTAAATGACGTGTATATT+AGG - chr5_4:24814005-24814024 Msa0845560:CDS 30.0%
GCTAAATGACGTGTATATTA+GGG - chr5_4:24814006-24814025 Msa0845560:CDS 30.0%
TCCATATTCTCAATGTGTTA+AGG - chr5_4:24814035-24814054 Msa0845560:CDS 30.0%
TCCTTAACACATTGAGAATA+TGG + chr5_4:24814039-24814058 None:intergenic 30.0%
TAAGGATTGAGATGAAGATT+TGG - chr5_4:24814053-24814072 Msa0845560:CDS 30.0%
! CTATTGTGTATGTCTTTTAG+TGG - chr5_4:24814079-24814098 Msa0845560:CDS 30.0%
ATGATCACTGTATAATGTAC+GGG + chr5_4:24814139-24814158 None:intergenic 30.0%
! GGTTATAAACACTTTCAAGT+TGG + chr5_4:24814199-24814218 None:intergenic 30.0%
AAAATCAGCATCTCTATTCA+AGG + chr5_4:24814318-24814337 None:intergenic 30.0%
TTCTTAGATGATAGTAAAGG+GGG - chr5_4:24814360-24814379 Msa0845560:CDS 30.0%
GTTCGAACAGATAAAGAAAA+TGG - chr5_4:24814456-24814475 Msa0845560:CDS 30.0%
CATTCGAATACAACTACAAA+AGG - chr5_4:24814551-24814570 Msa0845560:CDS 30.0%
AATCAATTCAATTCTAACCC+AGG + chr5_4:24814739-24814758 None:intergenic 30.0%
!! TAGCGGTTCTAATGATTTTT+CGG - chr5_4:24815002-24815021 Msa0845560:CDS 30.0%
! TGCATGAAACCTGATTTTTA+AGG - chr5_4:24815235-24815254 Msa0845560:intron 30.0%
ACAGAAGGATAAAAAGCTTA+AGG - chr5_4:24815324-24815343 Msa0845560:CDS 30.0%
TGAGAAAAGAACAAGTACTA+TGG - chr5_4:24815476-24815495 Msa0845560:five_prime_UTR 30.0%
!! ACCGAATCAAATTTTTAAGC+AGG - chr5_4:24815515-24815534 Msa0845560:five_prime_UTR 30.0%
ATAACTATGATGTATGAGCA+AGG + chr5_4:24815709-24815728 None:intergenic 30.0%
AATGTATCAACTTCATGGAA+TGG + chr5_4:24815841-24815860 None:intergenic 30.0%
!! AAGTTGATACATTCAGGAAT+GGG - chr5_4:24815848-24815867 Msa0845560:five_prime_UTR 30.0%
CAAATAGGTAAACTGCCTAA+TGG - chr5_4:24809992-24810011 Msa0845560:three_prime_UTR 35.0%
!!! ACACGTTTTGAGGATTGAAA+TGG + chr5_4:24810042-24810061 None:intergenic 35.0%
! AACCATTCATAGTGGAAAAG+TGG + chr5_4:24810275-24810294 None:intergenic 35.0%
GTTAGAGTATGGAGAAGAAA+TGG + chr5_4:24810333-24810352 None:intergenic 35.0%
TTCTTCTCCATACTCTAACT+TGG - chr5_4:24810334-24810353 Msa0845560:CDS 35.0%
TCCATACTCTAACTTGGTTA+TGG - chr5_4:24810340-24810359 Msa0845560:CDS 35.0%
TCCATAACCAAGTTAGAGTA+TGG + chr5_4:24810344-24810363 None:intergenic 35.0%
TCATACTCAGATTCTTCTTG+AGG - chr5_4:24810575-24810594 Msa0845560:intron 35.0%
AATTCACCGTCACAATCATT+AGG - chr5_4:24810728-24810747 Msa0845560:intron 35.0%
! TGGAGTGATGATTTTCATCA+AGG - chr5_4:24810815-24810834 Msa0845560:intron 35.0%
!!! GGAGAGTATTTTATCAAAGG+TGG - chr5_4:24810955-24810974 Msa0845560:intron 35.0%
TGAGTGTGAAATACATGAAG+AGG - chr5_4:24810979-24810998 Msa0845560:intron 35.0%
GAGTGTGAAATACATGAAGA+GGG - chr5_4:24810980-24810999 Msa0845560:intron 35.0%
! GAATTTGTTCAAGAAGATGG+CGG - chr5_4:24811025-24811044 Msa0845560:intron 35.0%
AAAATGAAGAGGTAGGTGAA+AGG - chr5_4:24811053-24811072 Msa0845560:intron 35.0%
AACAGTTGGATGATTCTCAA+TGG + chr5_4:24811086-24811105 None:intergenic 35.0%
TCTAATGTTCATGAAGATGG+AGG - chr5_4:24811226-24811245 Msa0845560:intron 35.0%
GAAGATGGAGGAAAATTTGA+TGG - chr5_4:24811238-24811257 Msa0845560:intron 35.0%
GAGATTAAGGTTCATGATGA+TGG - chr5_4:24811496-24811515 Msa0845560:CDS 35.0%
GAAGAAACAGAACAAGAAAC+AGG - chr5_4:24811598-24811617 Msa0845560:intron 35.0%
AGAAACAGAACAAGAAACAG+GGG - chr5_4:24811600-24811619 Msa0845560:intron 35.0%
! GAAGTATTCATACCTACTAG+TGG + chr5_4:24811662-24811681 None:intergenic 35.0%
AAACTGAATCGCAATGTTGT+TGG + chr5_4:24811718-24811737 None:intergenic 35.0%
!! TTCGTATGCATTTTGGGAAA+CGG + chr5_4:24811773-24811792 None:intergenic 35.0%
! TCAGAATCATCTAGTTCAAG+TGG - chr5_4:24811973-24811992 Msa0845560:intron 35.0%
CTAGTTCAAGTGGTTTAATC+TGG - chr5_4:24811983-24812002 Msa0845560:intron 35.0%
TTTGCTACCAAGAAACTCAT+AGG + chr5_4:24812040-24812059 None:intergenic 35.0%
! GAGTTTCTTGGTAGCAAAAA+TGG - chr5_4:24812042-24812061 Msa0845560:intron 35.0%
!! AAGTTGATGATGAGAGATGA+AGG - chr5_4:24812078-24812097 Msa0845560:intron 35.0%
ATGAGAGATGAAGGAATAGA+AGG - chr5_4:24812087-24812106 Msa0845560:intron 35.0%
AGATGAAGGAATAGAAGGTT+TGG - chr5_4:24812092-24812111 Msa0845560:intron 35.0%
! GTTTTCAAACCCTTCATATG+AGG + chr5_4:24812204-24812223 None:intergenic 35.0%
AGGTATGAAGAAAAGTGAAG+AGG - chr5_4:24812263-24812282 Msa0845560:CDS 35.0%
ATGGGAACATGAAGAAATAG+TGG - chr5_4:24812323-24812342 Msa0845560:CDS 35.0%
TTGAAGAATTCAAGACAAGG+AGG - chr5_4:24812363-24812382 Msa0845560:CDS 35.0%
AGCTTCACTTCAATCTTCAA+TGG + chr5_4:24812495-24812514 None:intergenic 35.0%
TATCAAACCATGCATGCATT+AGG - chr5_4:24812597-24812616 Msa0845560:intron 35.0%
CCTACAAATCAAGAGTAAAG+TGG + chr5_4:24813258-24813277 None:intergenic 35.0%
!! CCACTTTACTCTTGATTTGT+AGG - chr5_4:24813255-24813274 Msa0845560:intron 35.0%
! GATTATTCCATTTGAGATGG+TGG + chr5_4:24813328-24813347 None:intergenic 35.0%
ATGACTCACAAAAGTCTCAT+AGG - chr5_4:24813514-24813533 Msa0845560:CDS 35.0%
ATAGAGAATGAGCCATTTCA+AGG - chr5_4:24813591-24813610 Msa0845560:CDS 35.0%
CTTCATGTTCCAGCTATTAA+AGG - chr5_4:24813666-24813685 Msa0845560:CDS 35.0%
!! GTTACGAGTTTGGTGATTTT+TGG + chr5_4:24813830-24813849 None:intergenic 35.0%
ACCGATAATGTTGAGAAACA+TGG - chr5_4:24813855-24813874 Msa0845560:CDS 35.0%
AAATGACGTGTATATTAGGG+TGG - chr5_4:24814009-24814028 Msa0845560:CDS 35.0%
TGATCACTGTATAATGTACG+GGG + chr5_4:24814138-24814157 None:intergenic 35.0%
TAAAAAAAGGCTTTACGCGT+AGG + chr5_4:24814220-24814239 None:intergenic 35.0%
! AAGAATCAATGCGTGTGTTT+TGG - chr5_4:24814427-24814446 Msa0845560:CDS 35.0%
! AGAATCAATGCGTGTGTTTT+GGG - chr5_4:24814428-24814447 Msa0845560:CDS 35.0%
! CTAGAAGGTTTGAAATTGCA+GGG + chr5_4:24814527-24814546 None:intergenic 35.0%
! ACTAGAAGGTTTGAAATTGC+AGG + chr5_4:24814528-24814547 None:intergenic 35.0%
TGCAATTTCAAACCTTCTAG+TGG - chr5_4:24814527-24814546 Msa0845560:CDS 35.0%
!! ACAAATTGATTTTAGTGGCC+TGG - chr5_4:24814718-24814737 Msa0845560:CDS 35.0%
!! CAAATTGATTTTAGTGGCCT+GGG - chr5_4:24814719-24814738 Msa0845560:CDS 35.0%
TCATGCATGAAAACATGGTT+TGG + chr5_4:24815222-24815241 None:intergenic 35.0%
AGGTTTCATGCATGAAAACA+TGG + chr5_4:24815227-24815246 None:intergenic 35.0%
CTTAAGGACATAGTAAGAAC+TGG - chr5_4:24815340-24815359 Msa0845560:CDS 35.0%
TCAACTTGATCATGAGCAAT+TGG - chr5_4:24815402-24815421 Msa0845560:five_prime_UTR 35.0%
!! TCCATGAAGTTGATACATTC+AGG - chr5_4:24815842-24815861 Msa0845560:five_prime_UTR 35.0%
TCCTGAATGTATCAACTTCA+TGG + chr5_4:24815846-24815865 None:intergenic 35.0%
!! GAAGTTGATACATTCAGGAA+TGG - chr5_4:24815847-24815866 Msa0845560:five_prime_UTR 35.0%
! AGTTGATACATTCAGGAATG+GGG - chr5_4:24815849-24815868 Msa0845560:five_prime_UTR 35.0%
! GTTGTGTTTGACACGTTTTG+AGG + chr5_4:24810052-24810071 None:intergenic 40.0%
!! GTCCACTTTTCCACTATGAA+TGG - chr5_4:24810270-24810289 Msa0845560:three_prime_UTR 40.0%
CTCAGATTCTTCTTGAGGTT+TGG - chr5_4:24810580-24810599 Msa0845560:intron 40.0%
CCATCACCTAATGATTGTGA+CGG + chr5_4:24810737-24810756 None:intergenic 40.0%
!! AACAGAGTGCTCTGTTTTCA+TGG - chr5_4:24810841-24810860 Msa0845560:intron 40.0%
GGTAAGGAAAATGAAGAGGT+AGG - chr5_4:24811046-24811065 Msa0845560:intron 40.0%
!! GAAGGCTCTGATTTTAAGGA+TGG - chr5_4:24811334-24811353 Msa0845560:CDS 40.0%
GAGTCTAAGCTTCATGAAGA+TGG - chr5_4:24811358-24811377 Msa0845560:CDS 40.0%
GTCTCTGATGTTACTGAAGA+TGG - chr5_4:24811415-24811434 Msa0845560:CDS 40.0%
AGAAGTGGAACCTCATATGA+AGG - chr5_4:24812191-24812210 Msa0845560:intron 40.0%
GAAGTGGAACCTCATATGAA+GGG - chr5_4:24812192-24812211 Msa0845560:intron 40.0%
AGAGCTATGCAGAGAAAATG+AGG - chr5_4:24812556-24812575 Msa0845560:CDS 40.0%
!!! CCATTTGAGATGGTGGATTT+TGG + chr5_4:24813321-24813340 None:intergenic 40.0%
CCAAAATCCACCATCTCAAA+TGG - chr5_4:24813318-24813337 Msa0845560:CDS 40.0%
TTGGACAAATTTGCCTCTCA+TGG - chr5_4:24813445-24813464 Msa0845560:CDS 40.0%
TGGACAAATTTGCCTCTCAT+GGG - chr5_4:24813446-24813465 Msa0845560:CDS 40.0%
AACATAGGATTTCCCATGAG+AGG + chr5_4:24813461-24813480 None:intergenic 40.0%
TCTCATGGGAAATCCTATGT+TGG - chr5_4:24813460-24813479 Msa0845560:CDS 40.0%
CTTTCATGTGTAGCCAACAT+AGG + chr5_4:24813476-24813495 None:intergenic 40.0%
CATAGGTATAACCATGTTGC+TGG - chr5_4:24813531-24813550 Msa0845560:CDS 40.0%
TAATAGCTGGAACATGAAGC+AGG + chr5_4:24813665-24813684 None:intergenic 40.0%
! TCGGTGTTTAGTTACGAGTT+TGG + chr5_4:24813840-24813859 None:intergenic 40.0%
GTTAGTCCATTGTTGCTCTT+AGG - chr5_4:24814110-24814129 Msa0845560:CDS 40.0%
GTATTCGAATGTCCACTAGA+AGG + chr5_4:24814542-24814561 None:intergenic 40.0%
! TCTAAGGTCACGAGTTTAAG+TGG - chr5_4:24814758-24814777 Msa0845560:CDS 40.0%
TTTAGAGAACTCTTGCAACG+TGG + chr5_4:24814907-24814926 None:intergenic 40.0%
CTTGTGCTACATGTTACAGA+AGG - chr5_4:24815309-24815328 Msa0845560:CDS 40.0%
!! CATGATCAAGTTGATCCTCA+TGG + chr5_4:24815396-24815415 None:intergenic 40.0%
AGCAATTGGTTGCTCAAGTT+GGG - chr5_4:24815416-24815435 Msa0845560:five_prime_UTR 40.0%
! TTGGGTTGCGATTGATTTCA+AGG - chr5_4:24815434-24815453 Msa0845560:five_prime_UTR 40.0%
! TGGGTTGCGATTGATTTCAA+GGG - chr5_4:24815435-24815454 Msa0845560:five_prime_UTR 40.0%
GCAAAAAAGAAGGTTCCACA+TGG + chr5_4:24815549-24815568 None:intergenic 40.0%
TCTTGTGTGGCATACAAGTT+TGG - chr5_4:24815768-24815787 Msa0845560:five_prime_UTR 40.0%
! GGACTCCTTTTTCCAACTTG+TGG + chr5_4:24810254-24810273 None:intergenic 45.0%
CCGTCACAATCATTAGGTGA+TGG - chr5_4:24810734-24810753 Msa0845560:intron 45.0%
! TGTTCAAGAAGATGGCGGTA+AGG - chr5_4:24811030-24811049 Msa0845560:intron 45.0%
TGGCGGTAAGGAAAATGAAG+AGG - chr5_4:24811042-24811061 Msa0845560:intron 45.0%
!!! ACAAGGGTGTCTGTTTTCAG+CGG - chr5_4:24811541-24811560 Msa0845560:intron 45.0%
!!! AACAGGGGACTCTGTTTTTG+TGG - chr5_4:24811615-24811634 Msa0845560:intron 45.0%
TGGGAAACGGTTGAAACATC+AGG + chr5_4:24811760-24811779 None:intergenic 45.0%
CTCAAAGCGATGTGGAACAT+CGG + chr5_4:24811872-24811891 None:intergenic 45.0%
GTTCTCACCTAATGCATGCA+TGG + chr5_4:24812607-24812626 None:intergenic 45.0%
GTTGGGTGCGAGATGAATAA+TGG + chr5_4:24812915-24812934 None:intergenic 45.0%
GTTGAAACTCACCAGCAACA+TGG + chr5_4:24813545-24813564 None:intergenic 45.0%
GAGAATGAGCCATTTCAAGG+TGG - chr5_4:24813594-24813613 Msa0845560:CDS 45.0%
ATCCTTGGTCCACCTTGAAA+TGG + chr5_4:24813606-24813625 None:intergenic 45.0%
TGACGTGTATATTAGGGTGG+TGG - chr5_4:24814012-24814031 Msa0845560:CDS 45.0%
AGATGATAGTAAAGGGGGTG+AGG - chr5_4:24814365-24814384 Msa0845560:CDS 45.0%
AGGATCCAATTGCAAGTGGA+AGG - chr5_4:24814388-24814407 Msa0845560:CDS 45.0%
TGCAACCTTCCACTTGCAAT+TGG + chr5_4:24814396-24814415 None:intergenic 45.0%
!! GAAGTTCCAAAAGCACCATG+AGG - chr5_4:24815378-24815397 Msa0845560:exon 45.0%
! GTTGATCCTCATGGTGCTTT+TGG + chr5_4:24815387-24815406 None:intergenic 45.0%
GAGCAATTGGTTGCTCAAGT+TGG - chr5_4:24815415-24815434 Msa0845560:five_prime_UTR 45.0%
! GTTGCGATTGATTTCAAGGG+TGG - chr5_4:24815438-24815457 Msa0845560:five_prime_UTR 45.0%
AAGCAGGAAGATTGTCCATG+TGG - chr5_4:24815531-24815550 Msa0845560:five_prime_UTR 45.0%
GGTAGTGCAATGTTCTTGTG+TGG - chr5_4:24815755-24815774 Msa0845560:five_prime_UTR 45.0%
! TTTGAGAGCGAGGTGTTTGG+TGG - chr5_4:24811886-24811905 Msa0845560:intron 50.0%
AGCCATTTCAAGGTGGACCA+AGG - chr5_4:24813601-24813620 Msa0845560:CDS 50.0%
TGATAGTAAAGGGGGTGAGG+AGG - chr5_4:24814368-24814387 Msa0845560:CDS 50.0%
GAGGAGGATCCAATTGCAAG+TGG - chr5_4:24814384-24814403 Msa0845560:CDS 50.0%
AGAGAACTCTTGCAACGTGG+TGG + chr5_4:24814904-24814923 None:intergenic 50.0%
GTGTGGCATACAAGTTTGGC+TGG - chr5_4:24815772-24815791 Msa0845560:five_prime_UTR 50.0%
!! TCCACATCGCTTTGAGAGCG+AGG - chr5_4:24811876-24811895 Msa0845560:intron 55.0%
ACCTCGCTCTCAAAGCGATG+TGG + chr5_4:24811880-24811899 None:intergenic 55.0%
!! CGCTTTGAGAGCGAGGTGTT+TGG - chr5_4:24811883-24811902 Msa0845560:intron 55.0%
GGGGAGCCTAAGAGCAACAA+TGG + chr5_4:24814119-24814138 None:intergenic 55.0%
! TGCAACGTGGTGGAGTTGCA+AGG + chr5_4:24814894-24814913 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 24809977 24815913 24809977 ID=Msa0845560;Name=Msa0845560
chr5_4 mRNA 24809977 24815913 24809977 ID=Msa0845560-mRNA-1;Parent=Msa0845560;Name=Msa0845560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=534|1|1|1|1|1|5|331|961
chr5_4 exon 24809977 24810562 24809977 ID=Msa0845560-mRNA-1:exon:9947;Parent=Msa0845560-mRNA-1
chr5_4 exon 24811318 24811523 24811318 ID=Msa0845560-mRNA-1:exon:9946;Parent=Msa0845560-mRNA-1
chr5_4 exon 24812203 24812613 24812203 ID=Msa0845560-mRNA-1:exon:9945;Parent=Msa0845560-mRNA-1
chr5_4 exon 24813272 24815199 24813272 ID=Msa0845560-mRNA-1:exon:9944;Parent=Msa0845560-mRNA-1
chr5_4 exon 24815294 24815913 24815294 ID=Msa0845560-mRNA-1:exon:9943;Parent=Msa0845560-mRNA-1
chr5_4 five_prime_UTR 24815380 24815913 24815380 ID=Msa0845560-mRNA-1:five_prime_utr;Parent=Msa0845560-mRNA-1
chr5_4 CDS 24815294 24815379 24815294 ID=Msa0845560-mRNA-1:cds;Parent=Msa0845560-mRNA-1
chr5_4 CDS 24813272 24815199 24813272 ID=Msa0845560-mRNA-1:cds;Parent=Msa0845560-mRNA-1
chr5_4 CDS 24812203 24812613 24812203 ID=Msa0845560-mRNA-1:cds;Parent=Msa0845560-mRNA-1
chr5_4 CDS 24811318 24811523 24811318 ID=Msa0845560-mRNA-1:cds;Parent=Msa0845560-mRNA-1
chr5_4 CDS 24810308 24810562 24810308 ID=Msa0845560-mRNA-1:cds;Parent=Msa0845560-mRNA-1
chr5_4 three_prime_UTR 24809977 24810307 24809977 ID=Msa0845560-mRNA-1:three_prime_utr;Parent=Msa0845560-mRNA-1
Gene Sequence

>Msa0845560

ATGTCTTTGAATTTTGTTTCTGTGAGGGTTTTCATCAGCAATTATGTGTTCTATTCATTTGGATTCATACTCAGATTCTTCTTGAGGTTTCTTAAATTAGGAGATGCTAAAAAAGATCTCATTAATTCACCGTCACAATCATTAGGTGATGGAAATTTTCATGATTTCAAGGTTGATGGTTTTGCAGAAGATTTGTCTAATTTCCTTTTTTGGAGTGATGATTTTCATCAAGGAGAAACAGAGTGCTCTGTTTTCATGGATTCTGTTCATGAAGAAAAAACAGAGTTCTCTGTTTTGAAGAAAATTCACAATGATTTTCATGAAGATATTGTGAAAACAGAGATATATGTGGAGAGTATTTTATCAAAGGTGGTTGAGTGTGAAATACATGAAGAGGGTATTGATAAAGAAAAAGAAGATGAATTTGTTCAAGAAGATGGCGGTAAGGAAAATGAAGAGGTAGGTGAAAGGTTTGTTTCCATTGAGAATCATCCAACTGTTCATGAAATTGAAATGAAGAGTTTTGTTTGCTTGGAAAATGGTAATGATCTATGTCATGATAATATGAAGATAGAAGAGAAAGAAGAAGAAATAAGAGAGCATATCATAGTGGAGAATAACTCTAATGTTCATGAAGATGGAGGAAAATTTGATGGAATTGAAACAGAGTACTCTGTTTTCAATGAGAATGTAAATGAAGATGGTATGAAAAAAGATGAAAAGGAAATAGAAGGCTCTGATTTTAAGGATGGTGAGTCTAAGCTTCATGAAGATGGAGATGAAACAAAGTACTCTGTTTTCATGGAGAATGTCTCTGATGTTACTGAAGATGGTAACAAAATAGATGAAAATGAGAAAATGGATATAGAGGAATATGTTTTAAAAGATCATGAGATTAAGGTTCATGATGATGGTAAGAAAATGGATGAAATTGAAACAAGGGTGTCTGTTTTCAGCGGTGATGCCTTCGATGTTCATGATCATAAAAGAGAAGAAGAAACAGAACAAGAAACAGGGGACTCTGTTTTTGTGGAGAGTGACACTATAAAAACAACCACTAGTAGGTATGAATACTTCTCAGAAAAAGATATAAGTTGCTTTGTGGAAGAACCAACAACATTGCGATTCAGTTTTCGAGAATATTACACAAGTCCTGATGTTTCAACCGTTTCCCAAAATGCATACGAAGAGTTTTCAAAGCTTGATTCAGAGAAAGACATTGTAACTGAAGAACAACAAGAAAAAGAGGAGTCTATTCATTCAACCGATGTTCCACATCGCTTTGAGAGCGAGGTGTTTGGTGGAACTGATTCGTCTGATGAAGATTATTTCATTTTCAATGAAAACTCAGTGACATCTGATTCTGAGTCAGAATCATCTAGTTCAAGTGGTTTAATCTGGAGCAACAGCAACAAAATTGATGATTCATTTTCCTATGAGTTTCTTGGTAGCAAAAATGGTAGCGAAATTCTAAAGTTGATGATGAGAGATGAAGGAATAGAAGGTTTGGATGAAAACCAATTTTCATTTGATGATAAAGTTTCAAAATTTGGAGTTGATGAGGTTTTTTCTGAAAATGAGTATATAGAAGTGGAACCTCATATGAAGGGTTTGAAAACCTTTGAAGAACATGGTTTTGAAGTGAAAGATGAAAAAGAAGGTATGAAGAAAAGTGAAGAGGAATTGAATGGATCAGAATCTGATGAAGATGATTTTGAATGGGAACATGAAGAAATAGTGGAACAATTGAAGTTAGAATTGAAGAATTCAAGACAAGGAGGACTTGCCACAATCATAGAAGAAGTAGAAGATGAAGAAGAAGAAGAAGAAGAACAAGAACAAGAACAAGAAGAAAAAGAATCACCAAAAGTGGTTGAAGAATTAAAACCATTGAAGATTGAAGTGAAGCTAGAATTCAATGATCAAATGGATCAAATTGAGAAAGTTTACAAGAGCTATGCAGAGAAAATGAGGAAACTTGATATCTTGAATTATCAAACCATGCATGCATTAGGTCTTCTTCAACTAAAAGACCCTCTTAAATTAATTTCAATACCAAAATCCACCATCTCAAATGGAATAATCTCTCAAAATTTGTGGCCAAGAAAATCAACAAAGATCACATCTGACCCATTTTTAAAACTTGTTCATCAACTTCATATAGATTTGGAATTGGTATATGTTGGACAAATTTGCCTCTCATGGGAAATCCTATGTTGGCTACACATGAAAGCTATTGAGTTACAACAATATGACTCACAAAAGTCTCATAGGTATAACCATGTTGCTGGTGAGTTTCAACTTTTTCAAGTATTGATGCAAAGGTTCATAGAGAATGAGCCATTTCAAGGTGGACCAAGGATTCAGAATTATGTAAAGAATCGTTGTGTGATTAGGAACCTGCTTCATGTTCCAGCTATTAAAGATGATAGTAAAGGGGGTGAGGAGGATCCAATTGCAAGTGGAAGGTTGCAAGATATCATCAAAGAATCAATGCGTGTGTTTTGGGAATTTGTTCGAACAGATAAAGAAAATGGGAATGTGAATGTTATTTCTAAGCAAATTGGAAGTGATCTCAAAGACCCTGCAATTTCAAACCTTCTAGTGGACATTCGAATACAACTACAAAAGAAGGATAAAAAGCTTAAGGACATAGTAAGAACTGGAAATTGCATAGTGAAGAAGTTCCAAAAGCACCATGAGGATCAACTTGATCATGAGCAATTGGTTGCTCAAGTTGGGTTGCGATTGATTTCAAGGGTGGTAAACATGTCACAATTGAGAAAAGAACAAGTACTATGGTGTAGTGAAAAGTTGAACCGAATCAAATTTTTAAGCAGGAAGATTGTCCATGTGGAACCTTCTTTTTTGCTTTTTCCATATTGA
Protein sequence

>Msa0845560

MSLNFVSVRVFISNYVFYSFGFILRFFLRFLKLGDAKKDLINSPSQSLGDGNFHDFKVDGFAEDLSNFLFWSDDFHQGETECSVFMDSVHEEKTEFSVLKKIHNDFHEDIVKTEIYVESILSKVVECEIHEEGIDKEKEDEFVQEDGGKENEEVGERFVSIENHPTVHEIEMKSFVCLENGNDLCHDNMKIEEKEEEIREHIIVENNSNVHEDGGKFDGIETEYSVFNENVNEDGMKKDEKEIEGSDFKDGESKLHEDGDETKYSVFMENVSDVTEDGNKIDENEKMDIEEYVLKDHEIKVHDDGKKMDEIETRVSVFSGDAFDVHDHKREEETEQETGDSVFVESDTIKTTTSRYEYFSEKDISCFVEEPTTLRFSFREYYTSPDVSTVSQNAYEEFSKLDSEKDIVTEEQQEKEESIHSTDVPHRFESEVFGGTDSSDEDYFIFNENSVTSDSESESSSSSGLIWSNSNKIDDSFSYEFLGSKNGSEILKLMMRDEGIEGLDENQFSFDDKVSKFGVDEVFSENEYIEVEPHMKGLKTFEEHGFEVKDEKEGMKKSEEELNGSESDEDDFEWEHEEIVEQLKLELKNSRQGGLATIIEEVEDEEEEEEEQEQEQEEKESPKVVEELKPLKIEVKLEFNDQMDQIEKVYKSYAEKMRKLDILNYQTMHALGLLQLKDPLKLISIPKSTISNGIISQNLWPRKSTKITSDPFLKLVHQLHIDLELVYVGQICLSWEILCWLHMKAIELQQYDSQKSHRYNHVAGEFQLFQVLMQRFIENEPFQGGPRIQNYVKNRCVIRNLLHVPAIKDDSKGGEEDPIASGRLQDIIKESMRVFWEFVRTDKENGNVNVISKQIGSDLKDPAISNLLVDIRIQLQKKDKKLKDIVRTGNCIVKKFQKHHEDQLDHEQLVAQVGLRLISRVVNMSQLRKEQVLWCSEKLNRIKFLSRKIVHVEPSFLLFPY*