Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433440 | XP_024628351.1 | 83.556 | 450 | 18 | 2 | 1 | 394 | 1 | 450 | 0.0 | 738 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433440 | sp|F4KGE8|GIL1_ARATH | 40.411 | 146 | 73 | 6 | 244 | 380 | 415 | 555 | 3.79e-22 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433440 | A0A072TQI5 | 83.556 | 450 | 18 | 2 | 1 | 394 | 1 | 450 | 0.0 | 738 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029850 | Msa1433440 | 0.812629 | 3.849982e-51 | -8.615850e-47 |
| Msa0042550 | Msa1433440 | 0.817769 | 2.777050e-52 | -8.615850e-47 |
| Msa0045550 | Msa1433440 | 0.817922 | 2.564419e-52 | -8.615850e-47 |
| Msa0077180 | Msa1433440 | 0.804210 | 2.409218e-49 | -8.615850e-47 |
| Msa0085720 | Msa1433440 | 0.828280 | 9.813682e-55 | -8.615850e-47 |
| Msa1350720 | Msa1433440 | 0.819524 | 1.110273e-52 | -8.615850e-47 |
| Msa1357080 | Msa1433440 | 0.803211 | 3.883867e-49 | -8.615850e-47 |
| Msa1360240 | Msa1433440 | 0.871005 | 9.499567e-67 | -8.615850e-47 |
| Msa1371940 | Msa1433440 | 0.800010 | 1.760824e-48 | -8.615850e-47 |
| Msa1372150 | Msa1433440 | 0.819449 | 1.154879e-52 | -8.615850e-47 |
| Msa1385020 | Msa1433440 | 0.804355 | 2.248236e-49 | -8.615850e-47 |
| Msa1403340 | Msa1433440 | 0.811020 | 8.627497e-51 | -8.615850e-47 |
| Msa1420270 | Msa1433440 | 0.808501 | 3.003397e-50 | -8.615850e-47 |
| Msa1423820 | Msa1433440 | 0.827630 | 1.406632e-54 | -8.615850e-47 |
| Msa1424630 | Msa1433440 | 0.808474 | 3.043502e-50 | -8.615850e-47 |
| Msa1426570 | Msa1433440 | 0.801877 | 7.317294e-49 | -8.615850e-47 |
| Msa1430130 | Msa1433440 | 0.803993 | 2.674385e-49 | -8.615850e-47 |
| Msa1433440 | Msa1444260 | 0.854371 | 1.287020e-61 | -8.615850e-47 |
| Msa1433440 | Msa1460750 | 0.804184 | 2.440133e-49 | -8.615850e-47 |
| Msa0610130 | Msa1433440 | 0.812818 | 3.501625e-51 | -8.615850e-47 |
| Msa0610180 | Msa1433440 | 0.801521 | 8.659654e-49 | -8.615850e-47 |
| Msa0613460 | Msa1433440 | 0.804799 | 1.816298e-49 | -8.615850e-47 |
| Msa0626990 | Msa1433440 | 0.803603 | 3.222499e-49 | -8.615850e-47 |
| Msa0627350 | Msa1433440 | 0.807612 | 4.641616e-50 | -8.615850e-47 |
| Msa0643320 | Msa1433440 | 0.827574 | 1.450996e-54 | -8.615850e-47 |
| Msa0679550 | Msa1433440 | 0.832538 | 8.926844e-56 | -8.615850e-47 |
| Msa0682090 | Msa1433440 | 0.801302 | 9.599648e-49 | -8.615850e-47 |
| Msa0682140 | Msa1433440 | 0.803412 | 3.529619e-49 | -8.615850e-47 |
| Msa0683140 | Msa1433440 | 0.826805 | 2.217881e-54 | -8.615850e-47 |
| Msa0683600 | Msa1433440 | 0.801818 | 7.525019e-49 | -8.615850e-47 |
| Msa0689780 | Msa1433440 | 0.809253 | 2.073228e-50 | -8.615850e-47 |
| Msa0698440 | Msa1433440 | 0.808588 | 2.876766e-50 | -8.615850e-47 |
| Msa0703910 | Msa1433440 | 0.817490 | 3.210157e-52 | -8.615850e-47 |
| Msa0705190 | Msa1433440 | 0.805495 | 1.298572e-49 | -8.615850e-47 |
| Msa0713350 | Msa1433440 | 0.811024 | 8.611249e-51 | -8.615850e-47 |
| Msa0715410 | Msa1433440 | 0.817379 | 3.400707e-52 | -8.615850e-47 |
| Msa0721340 | Msa1433440 | 0.804969 | 1.673731e-49 | -8.615850e-47 |
| Msa0748070 | Msa1433440 | 0.806748 | 7.075716e-50 | -8.615850e-47 |
| Msa0754920 | Msa1433440 | 0.813836 | 2.091942e-51 | -8.615850e-47 |
| Msa0760350 | Msa1433440 | 0.823024 | 1.730103e-53 | -8.615850e-47 |
| Msa0799330 | Msa1433440 | 0.813547 | 2.422072e-51 | -8.615850e-47 |
| Msa0801730 | Msa1433440 | 0.827034 | 1.955421e-54 | -8.615850e-47 |
| Msa0809140 | Msa1433440 | 0.810609 | 1.058808e-50 | -8.615850e-47 |
| Msa0831850 | Msa1433440 | 0.807373 | 5.218511e-50 | -8.615850e-47 |
| Msa0834320 | Msa1433440 | 0.812877 | 3.398431e-51 | -8.615850e-47 |
| Msa0124550 | Msa1433440 | 0.800807 | 1.211853e-48 | -8.615850e-47 |
| Msa0138020 | Msa1433440 | 0.807778 | 4.280046e-50 | -8.615850e-47 |
| Msa0169820 | Msa1433440 | 0.813454 | 2.539117e-51 | -8.615850e-47 |
| Msa0175050 | Msa1433440 | 0.814587 | 1.427712e-51 | -8.615850e-47 |
| Msa0178510 | Msa1433440 | 0.815338 | 9.729011e-52 | -8.615850e-47 |
| Msa0185510 | Msa1433440 | 0.801822 | 7.509351e-49 | -8.615850e-47 |
| Msa0187490 | Msa1433440 | 0.805226 | 1.478393e-49 | -8.615850e-47 |
| Msa0187830 | Msa1433440 | 0.827149 | 1.835341e-54 | -8.615850e-47 |
| Msa0190530 | Msa1433440 | 0.800736 | 1.253042e-48 | -8.615850e-47 |
| Msa0193540 | Msa1433440 | 0.822800 | 1.950830e-53 | -8.615850e-47 |
| Msa0200580 | Msa1433440 | 0.806645 | 7.437903e-50 | -8.615850e-47 |
| Msa1229610 | Msa1433440 | 0.829403 | 5.250714e-55 | -8.615850e-47 |
| Msa1235400 | Msa1433440 | 0.811010 | 8.668249e-51 | -8.615850e-47 |
| Msa1241800 | Msa1433440 | 0.823691 | 1.208431e-53 | -8.615850e-47 |
| Msa1244930 | Msa1433440 | 0.859106 | 5.200913e-63 | -8.615850e-47 |
| Msa1258370 | Msa1433440 | 0.810748 | 9.877425e-51 | -8.615850e-47 |
| Msa1263290 | Msa1433440 | -0.814862 | 1.241082e-51 | -8.615850e-47 |
| Msa1270660 | Msa1433440 | 0.830414 | 2.976418e-55 | -8.615850e-47 |
| Msa1270730 | Msa1433440 | 0.833434 | 5.346781e-56 | -8.615850e-47 |
| Msa1272320 | Msa1433440 | 0.823649 | 1.236410e-53 | -8.615850e-47 |
| Msa1285260 | Msa1433440 | 0.871044 | 9.220200e-67 | -8.615850e-47 |
| Msa1297310 | Msa1433440 | 0.805460 | 1.320784e-49 | -8.615850e-47 |
| Msa1310220 | Msa1433440 | 0.829408 | 5.234095e-55 | -8.615850e-47 |
| Msa1314770 | Msa1433440 | 0.821528 | 3.848202e-53 | -8.615850e-47 |
| Msa1322200 | Msa1433440 | 0.863261 | 2.824304e-64 | -8.615850e-47 |
| Msa1325430 | Msa1433440 | 0.907736 | 3.671527e-81 | -8.615850e-47 |
| Msa1332050 | Msa1433440 | 0.825770 | 3.910915e-54 | -8.615850e-47 |
| Msa1335230 | Msa1433440 | 0.833086 | 6.527596e-56 | -8.615850e-47 |
| Msa0412840 | Msa1433440 | 0.811216 | 7.823961e-51 | -8.615850e-47 |
| Msa0427580 | Msa1433440 | 0.812208 | 4.758876e-51 | -8.615850e-47 |
| Msa0437400 | Msa1433440 | 0.807014 | 6.217002e-50 | -8.615850e-47 |
| Msa0457510 | Msa1433440 | 0.825371 | 4.862763e-54 | -8.615850e-47 |
| Msa0467220 | Msa1433440 | 0.803661 | 3.133386e-49 | -8.615850e-47 |
| Msa0481030 | Msa1433440 | 0.800128 | 1.666384e-48 | -8.615850e-47 |
| Msa0482180 | Msa1433440 | 0.841665 | 4.140070e-58 | -8.615850e-47 |
| Msa0992580 | Msa1433440 | 0.802102 | 6.578729e-49 | -8.615850e-47 |
| Msa0992600 | Msa1433440 | 0.816466 | 5.450424e-52 | -8.615850e-47 |
| Msa1026410 | Msa1433440 | 0.805512 | 1.287863e-49 | -8.615850e-47 |
| Msa1034280 | Msa1433440 | 0.803407 | 3.538549e-49 | -8.615850e-47 |
| Msa1050410 | Msa1433440 | 0.805027 | 1.627612e-49 | -8.615850e-47 |
| Msa1050740 | Msa1433440 | 0.805644 | 1.208525e-49 | -8.615850e-47 |
| Msa1063420 | Msa1433440 | 0.805970 | 1.031920e-49 | -8.615850e-47 |
| Msa1064250 | Msa1433440 | 0.804250 | 2.364542e-49 | -8.615850e-47 |
| Msa1070840 | Msa1433440 | 0.810382 | 1.184957e-50 | -8.615850e-47 |
| Msa1088290 | Msa1433440 | 0.803744 | 3.012244e-49 | -8.615850e-47 |
| Msa1098270 | Msa1433440 | 0.800030 | 1.745066e-48 | -8.615850e-47 |
| Msa0262370 | Msa1433440 | 0.844123 | 9.185478e-59 | -8.615850e-47 |
| Msa0265150 | Msa1433440 | 0.800094 | 1.693629e-48 | -8.615850e-47 |
| Msa0266240 | Msa1433440 | 0.857387 | 1.690270e-62 | -8.615850e-47 |
| Msa0274630 | Msa1433440 | 0.803615 | 3.203932e-49 | -8.615850e-47 |
| Msa0278900 | Msa1433440 | 0.832681 | 8.227344e-56 | -8.615850e-47 |
| Msa0287700 | Msa1433440 | 0.833905 | 4.075549e-56 | -8.615850e-47 |
| Msa0300150 | Msa1433440 | 0.834253 | 3.335083e-56 | -8.615850e-47 |
| Msa0309270 | Msa1433440 | 0.806651 | 7.416520e-50 | -8.615850e-47 |
| Msa0337590 | Msa1433440 | 0.818088 | 2.351869e-52 | -8.615850e-47 |
| Msa0357830 | Msa1433440 | 0.801784 | 7.645983e-49 | -8.615850e-47 |
| Msa0357840 | Msa1433440 | 0.803590 | 3.241886e-49 | -8.615850e-47 |
| Msa1111870 | Msa1433440 | 0.824727 | 6.899276e-54 | -8.615850e-47 |
| Msa1118760 | Msa1433440 | 0.817032 | 4.068690e-52 | -8.615850e-47 |
| Msa1126240 | Msa1433440 | 0.806095 | 9.715770e-50 | -8.615850e-47 |
| Msa1130530 | Msa1433440 | 0.800412 | 1.458711e-48 | -8.615850e-47 |
| Msa1164020 | Msa1433440 | 0.803127 | 4.042631e-49 | -8.615850e-47 |
| Msa1174310 | Msa1433440 | 0.818156 | 2.270767e-52 | -8.615850e-47 |
| Msa1177780 | Msa1433440 | 0.810517 | 1.108161e-50 | -8.615850e-47 |
| Msa1207310 | Msa1433440 | 0.815218 | 1.034727e-51 | -8.615850e-47 |
| Msa1222280 | Msa1433440 | 0.812990 | 3.210512e-51 | -8.615850e-47 |
| Msa0485490 | Msa1433440 | 0.831615 | 1.509862e-55 | -8.615850e-47 |
| Msa0518170 | Msa1433440 | 0.804464 | 2.133066e-49 | -8.615850e-47 |
| Msa0521740 | Msa1433440 | 0.809346 | 1.979771e-50 | -8.615850e-47 |
| Msa0523910 | Msa1433440 | 0.807977 | 3.882634e-50 | -8.615850e-47 |
| Msa0530650 | Msa1433440 | 0.811992 | 5.304409e-51 | -8.615850e-47 |
| Msa0557410 | Msa1433440 | 0.818109 | 2.327319e-52 | -8.615850e-47 |
| Msa0587190 | Msa1433440 | 0.818346 | 2.056442e-52 | -8.615850e-47 |
| Msa0844110 | Msa1433440 | 0.817090 | 3.949819e-52 | -8.615850e-47 |
| Msa0845560 | Msa1433440 | 0.801167 | 1.022905e-48 | -8.615850e-47 |
| Msa0876360 | Msa1433440 | 0.806184 | 9.302567e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433440 | MtrunA17_Chr8g0359791 | 82.701 | 422 | 17 | 2 | 29 | 394 | 1 | 422 | 0.0 | 685 |
| Msa1433440 | MtrunA17_Chr8g0379551 | 38.961 | 462 | 198 | 8 | 1 | 381 | 14 | 472 | 4.69e-97 | 298 |
| Msa1433440 | MtrunA17_Chr2g0315531 | 57.955 | 264 | 80 | 7 | 4 | 247 | 1 | 253 | 1.70e-86 | 270 |
| Msa1433440 | MtrunA17_Chr2g0315531 | 64.417 | 163 | 47 | 4 | 244 | 397 | 307 | 467 | 7.92e-58 | 196 |
| Msa1433440 | MtrunA17_Chr4g0011611 | 38.021 | 384 | 171 | 9 | 63 | 383 | 36 | 415 | 1.17e-69 | 225 |
| Msa1433440 | MtrunA17_Chr7g0230481 | 27.877 | 391 | 212 | 9 | 59 | 383 | 139 | 525 | 1.44e-38 | 145 |
| Msa1433440 | MtrunA17_Chr5g0432511 | 30.398 | 352 | 190 | 8 | 76 | 382 | 33 | 374 | 2.05e-36 | 137 |
| Msa1433440 | MtrunA17_Chr3g0103691 | 39.860 | 143 | 75 | 5 | 244 | 380 | 340 | 477 | 5.50e-23 | 100 |
| Msa1433440 | MtrunA17_Chr3g0103691 | 29.121 | 182 | 124 | 3 | 63 | 243 | 92 | 269 | 6.49e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433440 | AT3G14870.3 | 46.269 | 469 | 165 | 12 | 1 | 385 | 2 | 467 | 1.38e-124 | 368 |
| Msa1433440 | AT3G14870.4 | 46.269 | 469 | 165 | 12 | 1 | 385 | 1 | 466 | 1.75e-124 | 368 |
| Msa1433440 | AT3G14870.5 | 46.269 | 469 | 165 | 12 | 1 | 385 | 1 | 466 | 1.75e-124 | 368 |
| Msa1433440 | AT3G14870.2 | 46.269 | 469 | 165 | 12 | 1 | 385 | 1 | 466 | 1.75e-124 | 368 |
| Msa1433440 | AT3G14870.1 | 46.269 | 469 | 165 | 12 | 1 | 385 | 5 | 470 | 2.17e-124 | 368 |
| Msa1433440 | AT1G53380.2 | 45.374 | 454 | 172 | 10 | 1 | 381 | 1 | 451 | 2.25e-120 | 357 |
| Msa1433440 | AT1G53380.4 | 45.374 | 454 | 172 | 10 | 1 | 381 | 1 | 451 | 2.25e-120 | 357 |
| Msa1433440 | AT1G53380.1 | 45.374 | 454 | 172 | 10 | 1 | 381 | 1 | 451 | 2.25e-120 | 357 |
| Msa1433440 | AT1G53380.3 | 45.374 | 454 | 172 | 10 | 1 | 381 | 1 | 451 | 2.25e-120 | 357 |
| Msa1433440 | AT1G53380.5 | 45.374 | 454 | 172 | 10 | 1 | 381 | 1 | 451 | 2.25e-120 | 357 |
| Msa1433440 | AT1G29300.1 | 38.901 | 455 | 201 | 8 | 1 | 381 | 1 | 452 | 1.20e-93 | 288 |
| Msa1433440 | AT2G45260.1 | 36.340 | 388 | 173 | 9 | 63 | 381 | 37 | 419 | 3.55e-69 | 224 |
| Msa1433440 | AT3G60680.1 | 30.809 | 383 | 192 | 7 | 64 | 381 | 120 | 494 | 9.21e-46 | 164 |
| Msa1433440 | AT2G30380.1 | 32.033 | 359 | 180 | 9 | 66 | 382 | 76 | 412 | 4.52e-42 | 153 |
| Msa1433440 | AT4G34080.1 | 35.211 | 213 | 124 | 4 | 63 | 267 | 13 | 219 | 1.50e-32 | 124 |
| Msa1433440 | AT4G33320.1 | 34.052 | 232 | 128 | 6 | 45 | 267 | 5 | 220 | 3.75e-31 | 120 |
| Msa1433440 | AT2G32130.1 | 46.400 | 125 | 65 | 1 | 64 | 188 | 35 | 157 | 2.29e-26 | 103 |
| Msa1433440 | AT5G58960.2 | 40.411 | 146 | 73 | 6 | 244 | 380 | 340 | 480 | 2.84e-23 | 101 |
| Msa1433440 | AT5G58960.3 | 40.411 | 146 | 73 | 6 | 244 | 380 | 340 | 480 | 2.84e-23 | 101 |
| Msa1433440 | AT5G58960.1 | 40.411 | 146 | 73 | 6 | 244 | 380 | 415 | 555 | 3.85e-23 | 101 |
| Msa1433440 | AT4G36100.1 | 41.935 | 93 | 49 | 2 | 63 | 152 | 13 | 103 | 7.26e-15 | 73.9 |
Find 77 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGAAACTCTTGGGTTTA+AGG | 0.124364 | tig0027306:-39402 | None:intergenic |
| ACGAAATTTCCTGGGCTAAT+TGG | 0.188145 | tig0027306:-39517 | None:intergenic |
| AAGATGGCAAAAGGTGATTT+TGG | 0.202616 | tig0027306:-42844 | None:intergenic |
| TTCGTCTATTCCTGATTTCT+TGG | 0.212196 | tig0027306:+39944 | Msa1433440:five_prime_UTR |
| AAAGAATGATGCCTCCATTT+TGG | 0.219724 | tig0027306:-42899 | None:intergenic |
| GCTCTTCATCTTCTTCTTCA+TGG | 0.223159 | tig0027306:-42051 | None:intergenic |
| AATTGTTGCAGCCGAATTAA+AGG | 0.260563 | tig0027306:+42297 | Msa1433440:CDS |
| CAAGCTGAAATATTTCAAAT+AGG | 0.275982 | tig0027306:+43042 | Msa1433440:CDS |
| GTTCACTTCATTTGCTGAAA+TGG | 0.292950 | tig0027306:+42972 | Msa1433440:CDS |
| TGGGTTTAAGGGTGAGTTAT+AGG | 0.303144 | tig0027306:-39390 | None:intergenic |
| GAGTTTCTTACGAAATTTCC+TGG | 0.315975 | tig0027306:-39526 | None:intergenic |
| AAAATGGAGGCATCATTCTT+TGG | 0.328174 | tig0027306:+42901 | Msa1433440:CDS |
| AAAGAAACTCTTGGGTTTAA+GGG | 0.339582 | tig0027306:-39401 | None:intergenic |
| GTTGCTTTCACTGTAGTTCC+AGG | 0.358020 | tig0027306:+43150 | Msa1433440:CDS |
| GTTTCTTAAAGAGAAGTTAG+AGG | 0.364153 | tig0027306:+42402 | Msa1433440:CDS |
| AAGCTGAAATATTTCAAATA+GGG | 0.377206 | tig0027306:+43043 | Msa1433440:CDS |
| AGAATCGAAGTCGCTTCTTA+AGG | 0.377855 | tig0027306:+42366 | Msa1433440:CDS |
| GAGACTAGTTCACTCCAAAA+TGG | 0.381698 | tig0027306:+42885 | Msa1433440:CDS |
| TTATGACCGTGATGGAATTC+AGG | 0.383293 | tig0027306:+42174 | Msa1433440:CDS |
| ACTCTTCAGCTCCTTTAATT+CGG | 0.393760 | tig0027306:-42308 | None:intergenic |
| CTTGATAATCTACACATCTC+AGG | 0.410680 | tig0027306:+42487 | Msa1433440:CDS |
| TCGAAGCTTTGTGAAGTTGT+TGG | 0.425314 | tig0027306:+42561 | Msa1433440:CDS |
| GAATTCCATCACGGTCATAA+GGG | 0.426429 | tig0027306:-42171 | None:intergenic |
| TGAATTCCATCACGGTCATA+AGG | 0.426822 | tig0027306:-42172 | None:intergenic |
| AATTCTTCTATAGATGGATT+CGG | 0.428552 | tig0027306:+41895 | Msa1433440:intron |
| GTGAACAAGTTGTTGTCATC+AGG | 0.434944 | tig0027306:-42955 | None:intergenic |
| ATAATAACCCATAAAATTGT+GGG | 0.445312 | tig0027306:+42334 | Msa1433440:CDS |
| CTGAAATGGCTAAGAGGGTA+TGG | 0.458646 | tig0027306:+42986 | Msa1433440:CDS |
| AACTAAGAGAAAGAAACTCT+TGG | 0.461019 | tig0027306:-39410 | None:intergenic |
| GTCTATTCCTGATTTCTTGG+AGG | 0.461566 | tig0027306:+39947 | Msa1433440:five_prime_UTR |
| TTTCCTGGGCTAATTGGAAA+AGG | 0.463107 | tig0027306:-39511 | None:intergenic |
| TATAATAACCCATAAAATTG+TGG | 0.465583 | tig0027306:+42333 | Msa1433440:CDS |
| ACTAAGAGAAAGAAACTCTT+GGG | 0.467313 | tig0027306:-39409 | None:intergenic |
| GACACCACACAAGAGTAAAC+TGG | 0.474231 | tig0027306:+41934 | Msa1433440:CDS |
| ATACATACCTCCAAGAAATC+AGG | 0.476405 | tig0027306:-39954 | None:intergenic |
| ACTGGAGTTGCAGAAGTTGA+TGG | 0.478285 | tig0027306:+41995 | Msa1433440:CDS |
| CATTTGCTGAAATGGCTAAG+AGG | 0.480109 | tig0027306:+42980 | Msa1433440:CDS |
| GTTTATGAGATGAGATCTGC+TGG | 0.490000 | tig0027306:+42583 | Msa1433440:CDS |
| TGAGATGAGATCTGCTGGTT+GGG | 0.495349 | tig0027306:+42588 | Msa1433440:CDS |
| TGCTGATAAATTAATAGTCT+CGG | 0.502363 | tig0027306:+42198 | Msa1433440:CDS |
| CCCAGTCAATAAAATAACTC+AGG | 0.507210 | tig0027306:+39365 | Msa1433440:five_prime_UTR |
| ACCCAACAAAAGATGGCAAA+AGG | 0.514310 | tig0027306:-42853 | None:intergenic |
| AAAGCTTCGCAGCAAGCAAA+CGG | 0.514898 | tig0027306:+39448 | Msa1433440:five_prime_UTR |
| TAGCTGAGTTAAAGCAGTGT+TGG | 0.515094 | tig0027306:+42233 | Msa1433440:CDS |
| ATTCAATTTCGATCCTTCAC+CGG | 0.523812 | tig0027306:+42267 | Msa1433440:CDS |
| GACATGAAACAAAGGAATGT+TGG | 0.529644 | tig0027306:+42925 | Msa1433440:CDS |
| ATTTGCTGAAATGGCTAAGA+GGG | 0.540204 | tig0027306:+42981 | Msa1433440:CDS |
| GAAATATTTCAAATAGGGAA+AGG | 0.542615 | tig0027306:+43048 | Msa1433440:CDS |
| ACAATTGCTACCTCCGGTGA+AGG | 0.561510 | tig0027306:-42280 | None:intergenic |
| AGTTTCTTACGAAATTTCCT+GGG | 0.562697 | tig0027306:-39525 | None:intergenic |
| GCTGCAACAATTGCTACCTC+CGG | 0.565399 | tig0027306:-42286 | None:intergenic |
| AACAGAACAAGTTAATTGAA+AGG | 0.567554 | tig0027306:+42434 | Msa1433440:CDS |
| GTATTTCACCCAACAAAAGA+TGG | 0.568758 | tig0027306:-42860 | None:intergenic |
| CTTCGTGTAAAATCAATGAC+TGG | 0.569128 | tig0027306:+41977 | Msa1433440:CDS |
| ATGAGATGAGATCTGCTGGT+TGG | 0.569372 | tig0027306:+42587 | Msa1433440:CDS |
| AGAGAAGATATAAAATGTGT+AGG | 0.571896 | tig0027306:-42517 | None:intergenic |
| ATTTGAAATATTTCAGCTTG+AGG | 0.572451 | tig0027306:-43039 | None:intergenic |
| TAGATTCTCTGATGTATACA+TGG | 0.592423 | tig0027306:+43074 | Msa1433440:CDS |
| TATATCTTCTCTTCGCCACA+CGG | 0.595428 | tig0027306:+42528 | Msa1433440:CDS |
| TTGATAATCTACACATCTCA+GGG | 0.598936 | tig0027306:+42488 | Msa1433440:CDS |
| TCTTAAAGAGAAGTTAGAGG+AGG | 0.599840 | tig0027306:+42405 | Msa1433440:CDS |
| AATTCCATCACGGTCATAAG+GGG | 0.601774 | tig0027306:-42170 | None:intergenic |
| GAAAGGAGGTTAAATCAAAG+TGG | 0.604775 | tig0027306:+42451 | Msa1433440:CDS |
| ACACTGCTTTAACTCAGCTA+AGG | 0.616271 | tig0027306:-42230 | None:intergenic |
| AGAACAAGTTAATTGAAAGG+AGG | 0.617633 | tig0027306:+42437 | Msa1433440:CDS |
| CCAGTCAATAAAATAACTCA+GGG | 0.619282 | tig0027306:+39366 | Msa1433440:five_prime_UTR |
| GTTAAAATCAGTGAATGCAA+AGG | 0.621096 | tig0027306:+42804 | Msa1433440:intron |
| GAATCCCCTTATGACCGTGA+TGG | 0.621817 | tig0027306:+42166 | Msa1433440:CDS |
| CTTACTTAATACAACACAAG+TGG | 0.640580 | tig0027306:+39473 | Msa1433440:five_prime_UTR |
| TAATAACCCATAAAATTGTG+GGG | 0.649171 | tig0027306:+42335 | Msa1433440:CDS |
| CGAGCCAGTTTACTCTTGTG+TGG | 0.650973 | tig0027306:-41938 | None:intergenic |
| TCTTTGGTGACATGAAACAA+AGG | 0.654420 | tig0027306:+42917 | Msa1433440:CDS |
| CAATTTCGATCCTTCACCGG+AGG | 0.658011 | tig0027306:+42270 | Msa1433440:CDS |
| TTCGAATTGATTTAACCGTG+TGG | 0.660124 | tig0027306:-42543 | None:intergenic |
| CAGCATCCTGAATTCCATCA+CGG | 0.672142 | tig0027306:-42180 | None:intergenic |
| ACTAGTTCACTCCAAAATGG+AGG | 0.674833 | tig0027306:+42888 | Msa1433440:CDS |
| GTGGCTGTAATAACTGTGAG+AGG | 0.692386 | tig0027306:-43212 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTATATATAAAATAAA+AGG | + | tig0027306:40386-40405 | Msa1433440:intron | 0.0% |
| !!! | AAATTTTTTATATTCTACAA+GGG | + | tig0027306:40111-40130 | Msa1433440:intron | 10.0% |
| !!! | TTTTTATACTTTTTTTTGAG+AGG | - | tig0027306:39344-39363 | None:intergenic | 15.0% |
| !! | GAAAAATAATGAATACTAAT+TGG | - | tig0027306:39742-39761 | None:intergenic | 15.0% |
| !!! | CAAATTTTTTATATTCTACA+AGG | + | tig0027306:40110-40129 | Msa1433440:intron | 15.0% |
| !!! | AAAGATCAAAATATTTTGAA+CGG | + | tig0027306:40521-40540 | Msa1433440:intron | 15.0% |
| !!! | TATTTCTACATATTTTATTG+TGG | - | tig0027306:41470-41489 | None:intergenic | 15.0% |
| !! | CAATAAAATATGTAGAAATA+AGG | + | tig0027306:41470-41489 | Msa1433440:intron | 15.0% |
| !!! | AGAATCATAATCTTTAAAGT+CGG | + | tig0027306:39655-39674 | Msa1433440:intron | 20.0% |
| !! | TAGTTTAGTAATTGTGTTAA+TGG | + | tig0027306:40134-40153 | Msa1433440:intron | 20.0% |
| !!! | TTTATAGTTTTAGTAGTGAA+TGG | + | tig0027306:40698-40717 | Msa1433440:intron | 20.0% |
| !!! | AGTTTCATTGAATTTAGTTT+TGG | + | tig0027306:41240-41259 | Msa1433440:intron | 20.0% |
| !!! | TTAACTATTCCTTTTATGTT+AGG | + | tig0027306:41265-41284 | Msa1433440:intron | 20.0% |
| !!! | TTTAGGATAAAAAAGAGAAT+TGG | - | tig0027306:41428-41447 | None:intergenic | 20.0% |
| !! | AATTTCAATCCAAAAAAACA+AGG | - | tig0027306:41497-41516 | None:intergenic | 20.0% |
| !! | GTGTTTAAAAAGAATAAGTA+GGG | - | tig0027306:41836-41855 | None:intergenic | 20.0% |
| !! | AGTGTTTAAAAAGAATAAGT+AGG | - | tig0027306:41837-41856 | None:intergenic | 20.0% |
| !! | ATTATAACGAAGAATGAAAA+TGG | - | tig0027306:41878-41897 | None:intergenic | 20.0% |
| !! | TATAATAACCCATAAAATTG+TGG | + | tig0027306:42333-42352 | Msa1433440:CDS | 20.0% |
| !! | ATAATAACCCATAAAATTGT+GGG | + | tig0027306:42334-42353 | Msa1433440:CDS | 20.0% |
| !!! | TTAAAGAAAATGTTGGTTAT+AGG | + | tig0027306:42638-42657 | Msa1433440:intron | 20.0% |
| !!! | AATTGTGTTTTGTTTTTATC+AGG | - | tig0027306:42763-42782 | None:intergenic | 20.0% |
| !!! | AACAAAACACAATTTTTCTT+TGG | + | tig0027306:42769-42788 | Msa1433440:intron | 20.0% |
| !!! | ACAAAACACAATTTTTCTTT+GGG | + | tig0027306:42770-42789 | Msa1433440:intron | 20.0% |
| !! | AAGCTGAAATATTTCAAATA+GGG | + | tig0027306:43043-43062 | Msa1433440:CDS | 20.0% |
| !!! | TTATACTTTTTTTTGAGAGG+AGG | - | tig0027306:39341-39360 | None:intergenic | 25.0% |
| !! | GACTTTAAAGATTATGATTC+TGG | - | tig0027306:39656-39675 | None:intergenic | 25.0% |
| !!! | GATTTTGATTTTTGTTTTGC+AGG | + | tig0027306:39886-39905 | Msa1433440:intron | 25.0% |
| ! | CAAGTTAAATTAATCTCCTT+TGG | + | tig0027306:40020-40039 | Msa1433440:intron | 25.0% |
| ! | TTTGATTCATGTATGGATTT+GGG | + | tig0027306:40043-40062 | Msa1433440:intron | 25.0% |
| !! | AATTGTGTTAATGGTTTTTG+AGG | + | tig0027306:40143-40162 | Msa1433440:intron | 25.0% |
| !! | ATTGTGTTAATGGTTTTTGA+GGG | + | tig0027306:40144-40163 | Msa1433440:intron | 25.0% |
| ! | TAAATGTTTGTCTTAGTTAG+TGG | + | tig0027306:40412-40431 | Msa1433440:intron | 25.0% |
| !! | TTTTAGTAGTGAATGGAAAT+AGG | + | tig0027306:40705-40724 | Msa1433440:intron | 25.0% |
| !! | GTTGTGATAGTGAAATTAAA+AGG | + | tig0027306:40780-40799 | Msa1433440:intron | 25.0% |
| ! | AGTGAAATTAAAAGGTAATG+TGG | + | tig0027306:40788-40807 | Msa1433440:intron | 25.0% |
| ! | GTGAAATTAAAAGGTAATGT+GGG | + | tig0027306:40789-40808 | Msa1433440:intron | 25.0% |
| ! | TTCCTTATATGTAGATAATC+TGG | - | tig0027306:40879-40898 | None:intergenic | 25.0% |
| ! | AGATTATCTACATATAAGGA+AGG | + | tig0027306:40878-40897 | Msa1433440:intron | 25.0% |
| ! | GATTATCTACATATAAGGAA+GGG | + | tig0027306:40879-40898 | Msa1433440:intron | 25.0% |
| ! | TTAATTCAGATATCTGACAA+GGG | - | tig0027306:40973-40992 | None:intergenic | 25.0% |
| ! | TTTAATTCAGATATCTGACA+AGG | - | tig0027306:40974-40993 | None:intergenic | 25.0% |
| ! | CAACGAAGATTAAAATACTA+CGG | + | tig0027306:40994-41013 | Msa1433440:intron | 25.0% |
| ! | ATATCTCAAATGCATGAATA+TGG | - | tig0027306:41070-41089 | None:intergenic | 25.0% |
| !! | AAGATTTAAAATCTGCAGTT+CGG | + | tig0027306:41153-41172 | Msa1433440:intron | 25.0% |
| !!! | AAATAAGGACCTTGTTTTTT+TGG | + | tig0027306:41485-41504 | Msa1433440:intron | 25.0% |
| !! | TTGTTTAGAAATGTCTTTTG+AGG | + | tig0027306:41636-41655 | Msa1433440:intron | 25.0% |
| ! | CGTTATAATTCTTCTATAGA+TGG | + | tig0027306:41889-41908 | Msa1433440:intron | 25.0% |
| !! | AATTCTTCTATAGATGGATT+CGG | + | tig0027306:41895-41914 | Msa1433440:intron | 25.0% |
| ! | TGCTGATAAATTAATAGTCT+CGG | + | tig0027306:42198-42217 | Msa1433440:CDS | 25.0% |
| ! | TAATAACCCATAAAATTGTG+GGG | + | tig0027306:42335-42354 | Msa1433440:CDS | 25.0% |
| ! | AACAGAACAAGTTAATTGAA+AGG | + | tig0027306:42434-42453 | Msa1433440:CDS | 25.0% |
| ! | AGAGAAGATATAAAATGTGT+AGG | - | tig0027306:42520-42539 | None:intergenic | 25.0% |
| ! | GCTATTGTTAAAGAAAATGT+TGG | + | tig0027306:42631-42650 | Msa1433440:intron | 25.0% |
| !!! | AATTGAGTCTTTTGTTTGTA+GGG | + | tig0027306:42684-42703 | Msa1433440:intron | 25.0% |
| ! | CATTGTGATTATCGAAATAA+GGG | - | tig0027306:42732-42751 | None:intergenic | 25.0% |
| ! | TCATTGTGATTATCGAAATA+AGG | - | tig0027306:42733-42752 | None:intergenic | 25.0% |
| !! | ATTTGAAATATTTCAGCTTG+AGG | - | tig0027306:43042-43061 | None:intergenic | 25.0% |
| ! | CAAGCTGAAATATTTCAAAT+AGG | + | tig0027306:43042-43061 | Msa1433440:CDS | 25.0% |
| ! | GAAATATTTCAAATAGGGAA+AGG | + | tig0027306:43048-43067 | Msa1433440:CDS | 25.0% |
| !! | CCTGAGTTATTTTATTGACT+GGG | - | tig0027306:39368-39387 | None:intergenic | 30.0% |
| CCAGTCAATAAAATAACTCA+GGG | + | tig0027306:39366-39385 | Msa1433440:five_prime_UTR | 30.0% | |
| AAAGAAACTCTTGGGTTTAA+GGG | - | tig0027306:39404-39423 | None:intergenic | 30.0% | |
| ACTAAGAGAAAGAAACTCTT+GGG | - | tig0027306:39412-39431 | None:intergenic | 30.0% | |
| AACTAAGAGAAAGAAACTCT+TGG | - | tig0027306:39413-39432 | None:intergenic | 30.0% | |
| CTTACTTAATACAACACAAG+TGG | + | tig0027306:39473-39492 | Msa1433440:five_prime_UTR | 30.0% | |
| AGTTTCTTACGAAATTTCCT+GGG | - | tig0027306:39528-39547 | None:intergenic | 30.0% | |
| !!! | AAGTCGGTGTTTTTTCAAAA+AGG | + | tig0027306:39671-39690 | Msa1433440:intron | 30.0% |
| TGTAAAATAGCAATCAAGCA+AGG | - | tig0027306:40002-40021 | None:intergenic | 30.0% | |
| GTTTGATTCATGTATGGATT+TGG | + | tig0027306:40042-40061 | Msa1433440:intron | 30.0% | |
| AAAAAAAAACTATGTCACCC+AGG | - | tig0027306:40228-40247 | None:intergenic | 30.0% | |
| AAATAGGTATCTCTTGTGAT+GGG | + | tig0027306:40721-40740 | Msa1433440:intron | 30.0% | |
| GACCAGATTATCTACATATA+AGG | + | tig0027306:40874-40893 | Msa1433440:intron | 30.0% | |
| TTCTGTGATTCATAATCCTT+AGG | - | tig0027306:40915-40934 | None:intergenic | 30.0% | |
| ! | TCATGCATTTGAGATATCAA+TGG | + | tig0027306:41073-41092 | Msa1433440:intron | 30.0% |
| GCTTAATCCAATTTCACAAA+AGG | + | tig0027306:41216-41235 | Msa1433440:intron | 30.0% | |
| ! | GAAACTACCTTTTGTGAAAT+TGG | - | tig0027306:41226-41245 | None:intergenic | 30.0% |
| AAGAGGAATCCTAACATAAA+AGG | - | tig0027306:41277-41296 | None:intergenic | 30.0% | |
| ATTCCTCTTTCAAAGGAAAT+GGG | + | tig0027306:41288-41307 | Msa1433440:intron | 30.0% | |
| !!! | CGCTTAATTAGTTTGTGTTT+TGG | - | tig0027306:41362-41381 | None:intergenic | 30.0% |
| ACCTCTTTACAAATAAGTTC+TGG | + | tig0027306:41385-41404 | Msa1433440:intron | 30.0% | |
| ACCAGAACTTATTTGTAAAG+AGG | - | tig0027306:41389-41408 | None:intergenic | 30.0% | |
| ! | TAAGTTCTGGTTACTTTGAA+TGG | + | tig0027306:41398-41417 | Msa1433440:intron | 30.0% |
| ! | CTACATATTTTATTGTGGAC+AGG | - | tig0027306:41465-41484 | None:intergenic | 30.0% |
| GCAATTAAGTCATCAAAAGA+TGG | - | tig0027306:41814-41833 | None:intergenic | 30.0% | |
| TGAAGAGCTTAAGAAAAAAG+TGG | + | tig0027306:42066-42085 | Msa1433440:CDS | 30.0% | |
| GTTTCTTAAAGAGAAGTTAG+AGG | + | tig0027306:42402-42421 | Msa1433440:CDS | 30.0% | |
| AGAACAAGTTAATTGAAAGG+AGG | + | tig0027306:42437-42456 | Msa1433440:CDS | 30.0% | |
| ! | TTGATAATCTACACATCTCA+GGG | + | tig0027306:42488-42507 | Msa1433440:CDS | 30.0% |
| !! | CAATTGAGTCTTTTGTTTGT+AGG | + | tig0027306:42683-42702 | Msa1433440:intron | 30.0% |
| ! | AAACACAATTTTTCTTTGGG+AGG | + | tig0027306:42773-42792 | Msa1433440:intron | 30.0% |
| GTTAAAATCAGTGAATGCAA+AGG | + | tig0027306:42804-42823 | Msa1433440:intron | 30.0% | |
| TAGATTCTCTGATGTATACA+TGG | + | tig0027306:43074-43093 | Msa1433440:CDS | 30.0% | |
| ! | GTTTTACCAATCTTAAAACC+TGG | - | tig0027306:43171-43190 | None:intergenic | 30.0% |
| CCCAGTCAATAAAATAACTC+AGG | + | tig0027306:39365-39384 | Msa1433440:five_prime_UTR | 35.0% | |
| !! | CCCTGAGTTATTTTATTGAC+TGG | - | tig0027306:39369-39388 | None:intergenic | 35.0% |
| GAAAGAAACTCTTGGGTTTA+AGG | - | tig0027306:39405-39424 | None:intergenic | 35.0% | |
| GAGTTTCTTACGAAATTTCC+TGG | - | tig0027306:39529-39548 | None:intergenic | 35.0% | |
| TTCGTCTATTCCTGATTTCT+TGG | + | tig0027306:39944-39963 | Msa1433440:five_prime_UTR | 35.0% | |
| ATACATACCTCCAAGAAATC+AGG | - | tig0027306:39957-39976 | None:intergenic | 35.0% | |
| AAATAGCAATCAAGCAAGGA+AGG | - | tig0027306:39998-40017 | None:intergenic | 35.0% | |
| CCATACATGAATCAAACCAA+AGG | - | tig0027306:40039-40058 | None:intergenic | 35.0% | |
| !! | CCTTTGGTTTGATTCATGTA+TGG | + | tig0027306:40036-40055 | Msa1433440:intron | 35.0% |
| !! | TCATGTATGGATTTGGGTTT+TGG | + | tig0027306:40049-40068 | Msa1433440:intron | 35.0% |
| TCTTGTGTTGTGCTTTCTTA+AGG | + | tig0027306:40178-40197 | Msa1433440:intron | 35.0% | |
| ! | TGCATTTTAGATGAGAGAGA+AGG | + | tig0027306:40263-40282 | Msa1433440:intron | 35.0% |
| ACACTAAGATGAGAATCTAC+CGG | - | tig0027306:40353-40372 | None:intergenic | 35.0% | |
| AACAGTGGGAAAACAGTAAA+TGG | + | tig0027306:40459-40478 | Msa1433440:intron | 35.0% | |
| TCATAAAGGGAAAAGGAAGT+GGG | - | tig0027306:40603-40622 | None:intergenic | 35.0% | |
| ATCATAAAGGGAAAAGGAAG+TGG | - | tig0027306:40604-40623 | None:intergenic | 35.0% | |
| TGTGTGATCATAAAGGGAAA+AGG | - | tig0027306:40610-40629 | None:intergenic | 35.0% | |
| TACCAGTGTGTGATCATAAA+GGG | - | tig0027306:40616-40635 | None:intergenic | 35.0% | |
| ATACCAGTGTGTGATCATAA+AGG | - | tig0027306:40617-40636 | None:intergenic | 35.0% | |
| GAAATAGGTATCTCTTGTGA+TGG | + | tig0027306:40720-40739 | Msa1433440:intron | 35.0% | |
| ACAAGGACTCATATCAAAGT+GGG | - | tig0027306:40829-40848 | None:intergenic | 35.0% | |
| AACAAGGACTCATATCAAAG+TGG | - | tig0027306:40830-40849 | None:intergenic | 35.0% | |
| ATGGCAAAATCTTAACTGCA+GGG | - | tig0027306:41051-41070 | None:intergenic | 35.0% | |
| TATGGCAAAATCTTAACTGC+AGG | - | tig0027306:41052-41071 | None:intergenic | 35.0% | |
| TGTTAGGATTCCTCTTTCAA+AGG | + | tig0027306:41281-41300 | Msa1433440:intron | 35.0% | |
| GATTCCTCTTTCAAAGGAAA+TGG | + | tig0027306:41287-41306 | Msa1433440:intron | 35.0% | |
| ! | TTCTGGTTACTTTGAATGGT+GGG | + | tig0027306:41402-41421 | Msa1433440:intron | 35.0% |
| ! | GCATGTTTAGAAAGCTCTAA+AGG | - | tig0027306:41616-41635 | None:intergenic | 35.0% |
| GAAACTCCAACCTCTATTAA+AGG | + | tig0027306:41709-41728 | Msa1433440:intron | 35.0% | |
| TACATCAAGGCCTTTAATAG+AGG | - | tig0027306:41722-41741 | None:intergenic | 35.0% | |
| ATGCTTTAACGCTTACATCA+AGG | - | tig0027306:41735-41754 | None:intergenic | 35.0% | |
| CTTCGTGTAAAATCAATGAC+TGG | + | tig0027306:41977-41996 | Msa1433440:CDS | 35.0% | |
| ATTCAATTTCGATCCTTCAC+CGG | + | tig0027306:42267-42286 | Msa1433440:CDS | 35.0% | |
| AATTGTTGCAGCCGAATTAA+AGG | + | tig0027306:42297-42316 | Msa1433440:CDS | 35.0% | |
| ACTCTTCAGCTCCTTTAATT+CGG | - | tig0027306:42311-42330 | None:intergenic | 35.0% | |
| ! | CTTCTTCCCCACAATTTTAT+GGG | - | tig0027306:42344-42363 | None:intergenic | 35.0% |
| ! | ACTTCTTCCCCACAATTTTA+TGG | - | tig0027306:42345-42364 | None:intergenic | 35.0% |
| TCTTAAAGAGAAGTTAGAGG+AGG | + | tig0027306:42405-42424 | Msa1433440:CDS | 35.0% | |
| GAAAGGAGGTTAAATCAAAG+TGG | + | tig0027306:42451-42470 | Msa1433440:CDS | 35.0% | |
| ! | CTTGATAATCTACACATCTC+AGG | + | tig0027306:42487-42506 | Msa1433440:CDS | 35.0% |
| ! | TTCGAATTGATTTAACCGTG+TGG | - | tig0027306:42546-42565 | None:intergenic | 35.0% |
| TGTGATTATCGAAATAAGGG+AGG | - | tig0027306:42729-42748 | None:intergenic | 35.0% | |
| ! | AAGATGGCAAAAGGTGATTT+TGG | - | tig0027306:42847-42866 | None:intergenic | 35.0% |
| ! | ACCTTTTGCCATCTTTTGTT+GGG | + | tig0027306:42852-42871 | Msa1433440:CDS | 35.0% |
| GTATTTCACCCAACAAAAGA+TGG | - | tig0027306:42863-42882 | None:intergenic | 35.0% | |
| ! | AAAGAATGATGCCTCCATTT+TGG | - | tig0027306:42902-42921 | None:intergenic | 35.0% |
| !! | AAAATGGAGGCATCATTCTT+TGG | + | tig0027306:42901-42920 | Msa1433440:CDS | 35.0% |
| ! | TCTTTGGTGACATGAAACAA+AGG | + | tig0027306:42917-42936 | Msa1433440:CDS | 35.0% |
| GACATGAAACAAAGGAATGT+TGG | + | tig0027306:42925-42944 | Msa1433440:CDS | 35.0% | |
| ! | GTTCACTTCATTTGCTGAAA+TGG | + | tig0027306:42972-42991 | Msa1433440:CDS | 35.0% |
| ! | ATTTGCTGAAATGGCTAAGA+GGG | + | tig0027306:42981-43000 | Msa1433440:CDS | 35.0% |
| !!! | GTAGTTCCAGGTTTTAAGAT+TGG | + | tig0027306:43162-43181 | Msa1433440:CDS | 35.0% |
| ! | TTTCTTTTCACTTGAGCTTG+TGG | - | tig0027306:43234-43253 | None:intergenic | 35.0% |
| TGGGTTTAAGGGTGAGTTAT+AGG | - | tig0027306:39393-39412 | None:intergenic | 40.0% | |
| ! | TTTCCTTTTCCAATTAGCCC+AGG | + | tig0027306:39508-39527 | Msa1433440:five_prime_UTR | 40.0% |
| TTTCCTGGGCTAATTGGAAA+AGG | - | tig0027306:39514-39533 | None:intergenic | 40.0% | |
| ACGAAATTTCCTGGGCTAAT+TGG | - | tig0027306:39520-39539 | None:intergenic | 40.0% | |
| GATAGATAGGCTGAAAAGAG+GGG | - | tig0027306:39629-39648 | None:intergenic | 40.0% | |
| CGATAGATAGGCTGAAAAGA+GGG | - | tig0027306:39630-39649 | None:intergenic | 40.0% | |
| ! | CCTCTTTTCAGCCTATCTAT+CGG | + | tig0027306:39628-39647 | Msa1433440:intron | 40.0% |
| GAGAAGAGACGATAGAACAA+AGG | - | tig0027306:39781-39800 | None:intergenic | 40.0% | |
| GTCTATTCCTGATTTCTTGG+AGG | + | tig0027306:39947-39966 | Msa1433440:five_prime_UTR | 40.0% | |
| ! | GAAAGCACAACACAAGACAA+TGG | - | tig0027306:40175-40194 | None:intergenic | 40.0% |
| CTTTCTTAAGGTAGCATGTC+CGG | + | tig0027306:40190-40209 | Msa1433440:intron | 40.0% | |
| GGATTGATTAAGAGAGATCG+AGG | + | tig0027306:40284-40303 | Msa1433440:intron | 40.0% | |
| AGTGGATGTTGAAATGACTG+TGG | + | tig0027306:40430-40449 | Msa1433440:intron | 40.0% | |
| GATGTTGAAATGACTGTGGT+GGG | + | tig0027306:40434-40453 | Msa1433440:intron | 40.0% | |
| TTGTAGAGAGTCGTTAGTCA+TGG | + | tig0027306:40497-40516 | Msa1433440:intron | 40.0% | |
| CATAAAGGGAAAAGGAAGTG+GGG | - | tig0027306:40602-40621 | None:intergenic | 40.0% | |
| TTCCCTTTATGATCACACAC+TGG | + | tig0027306:40611-40630 | Msa1433440:intron | 40.0% | |
| TCAAAGTGGGATCATGACAA+AGG | - | tig0027306:40816-40835 | None:intergenic | 40.0% | |
| TCCTTGTTGCAGACACATAT+AGG | + | tig0027306:40842-40861 | Msa1433440:intron | 40.0% | |
| TGTAGATAATCTGGTCTAGC+AGG | - | tig0027306:40870-40889 | None:intergenic | 40.0% | |
| TACATATAAGGAAGGGCTCA+GGG | + | tig0027306:40886-40905 | Msa1433440:intron | 40.0% | |
| TGGCAAAATCTTAACTGCAG+GGG | - | tig0027306:41050-41069 | None:intergenic | 40.0% | |
| CATGAAAAACTGCTGCATTC+AGG | - | tig0027306:41193-41212 | None:intergenic | 40.0% | |
| ! | CTACCCATTTCCTTTGAAAG+AGG | - | tig0027306:41294-41313 | None:intergenic | 40.0% |
| ! | GTTCTGGTTACTTTGAATGG+TGG | + | tig0027306:41401-41420 | Msa1433440:intron | 40.0% |
| !!! | AGGCTTTTCAGGCTTTGTTT+AGG | - | tig0027306:41445-41464 | None:intergenic | 40.0% |
| ! | TTATTGTGGACAGGCTTTTC+AGG | - | tig0027306:41456-41475 | None:intergenic | 40.0% |
| CAGTGAAAAGCAAAGCTTCA+AGG | - | tig0027306:41534-41553 | None:intergenic | 40.0% | |
| TCAAGGCCTTTAATAGAGGT+TGG | - | tig0027306:41718-41737 | None:intergenic | 40.0% | |
| GCTCTTCATCTTCTTCTTCA+TGG | - | tig0027306:42054-42073 | None:intergenic | 40.0% | |
| AATTCCATCACGGTCATAAG+GGG | - | tig0027306:42173-42192 | None:intergenic | 40.0% | |
| GAATTCCATCACGGTCATAA+GGG | - | tig0027306:42174-42193 | None:intergenic | 40.0% | |
| TGAATTCCATCACGGTCATA+AGG | - | tig0027306:42175-42194 | None:intergenic | 40.0% | |
| ! | TTATGACCGTGATGGAATTC+AGG | + | tig0027306:42174-42193 | Msa1433440:CDS | 40.0% |
| ACACTGCTTTAACTCAGCTA+AGG | - | tig0027306:42233-42252 | None:intergenic | 40.0% | |
| TAGCTGAGTTAAAGCAGTGT+TGG | + | tig0027306:42233-42252 | Msa1433440:CDS | 40.0% | |
| AGAATCGAAGTCGCTTCTTA+AGG | + | tig0027306:42366-42385 | Msa1433440:CDS | 40.0% | |
| TATATCTTCTCTTCGCCACA+CGG | + | tig0027306:42528-42547 | Msa1433440:CDS | 40.0% | |
| ! | TCGAAGCTTTGTGAAGTTGT+TGG | + | tig0027306:42561-42580 | Msa1433440:CDS | 40.0% |
| GTTTATGAGATGAGATCTGC+TGG | + | tig0027306:42583-42602 | Msa1433440:CDS | 40.0% | |
| ! | CACCTTTTGCCATCTTTTGT+TGG | + | tig0027306:42851-42870 | Msa1433440:CDS | 40.0% |
| ACCCAACAAAAGATGGCAAA+AGG | - | tig0027306:42856-42875 | None:intergenic | 40.0% | |
| ! | GAGACTAGTTCACTCCAAAA+TGG | + | tig0027306:42885-42904 | Msa1433440:CDS | 40.0% |
| ACTAGTTCACTCCAAAATGG+AGG | + | tig0027306:42888-42907 | Msa1433440:CDS | 40.0% | |
| GTGAACAAGTTGTTGTCATC+AGG | - | tig0027306:42958-42977 | None:intergenic | 40.0% | |
| ! | CATTTGCTGAAATGGCTAAG+AGG | + | tig0027306:42980-42999 | Msa1433440:CDS | 40.0% |
| AAAGCTTCGCAGCAAGCAAA+CGG | + | tig0027306:39448-39467 | Msa1433440:five_prime_UTR | 45.0% | |
| CCGATAGATAGGCTGAAAAG+AGG | - | tig0027306:39631-39650 | None:intergenic | 45.0% | |
| !! | TGATTCTGGCTCCGATAGAT+AGG | - | tig0027306:39642-39661 | None:intergenic | 45.0% |
| AGCAATCAAGCAAGGAAGGA+AGG | - | tig0027306:39994-40013 | None:intergenic | 45.0% | |
| CACAACACAAGACAATGGAC+GGG | - | tig0027306:40170-40189 | None:intergenic | 45.0% | |
| GCACAACACAAGACAATGGA+CGG | - | tig0027306:40171-40190 | None:intergenic | 45.0% | |
| ! | ACCTGGGTGACATAGCTTTT+GGG | - | tig0027306:40319-40338 | None:intergenic | 45.0% |
| AGATGAGAATCTACCGGACA+CGG | - | tig0027306:40347-40366 | None:intergenic | 45.0% | |
| GGATGTTGAAATGACTGTGG+TGG | + | tig0027306:40433-40452 | Msa1433440:intron | 45.0% | |
| GAGAAACTATAACACCCCTG+AGG | - | tig0027306:40750-40769 | None:intergenic | 45.0% | |
| GCCTATATGTGTCTGCAACA+AGG | - | tig0027306:40846-40865 | None:intergenic | 45.0% | |
| CTACATATAAGGAAGGGCTC+AGG | + | tig0027306:40885-40904 | Msa1433440:intron | 45.0% | |
| GACACCACACAAGAGTAAAC+TGG | + | tig0027306:41934-41953 | Msa1433440:CDS | 45.0% | |
| ACTGGAGTTGCAGAAGTTGA+TGG | + | tig0027306:41995-42014 | Msa1433440:CDS | 45.0% | |
| CAGCATCCTGAATTCCATCA+CGG | - | tig0027306:42183-42202 | None:intergenic | 45.0% | |
| ATGAGATGAGATCTGCTGGT+TGG | + | tig0027306:42587-42606 | Msa1433440:CDS | 45.0% | |
| ! | TGAGATGAGATCTGCTGGTT+GGG | + | tig0027306:42588-42607 | Msa1433440:CDS | 45.0% |
| CTGAAATGGCTAAGAGGGTA+TGG | + | tig0027306:42986-43005 | Msa1433440:CDS | 45.0% | |
| ! | GTTGCTTTCACTGTAGTTCC+AGG | + | tig0027306:43150-43169 | Msa1433440:CDS | 45.0% |
| GTGGCTGTAATAACTGTGAG+AGG | - | tig0027306:43215-43234 | None:intergenic | 45.0% | |
| !! | TTAAAAATAATTTAATCTTA+TGG | - | tig0027306:39551-39570 | None:intergenic | 5.0% |
| TAAGGTAGCATGTCCGGTGT+CGG | + | tig0027306:40196-40215 | Msa1433440:intron | 50.0% | |
| ! | CCTGGGTGACATAGCTTTTG+GGG | - | tig0027306:40318-40337 | None:intergenic | 50.0% |
| ! | CACCTGGGTGACATAGCTTT+TGG | - | tig0027306:40320-40339 | None:intergenic | 50.0% |
| ! | TGACTGTGGTGGGAAAACAG+TGG | + | tig0027306:40444-40463 | Msa1433440:intron | 50.0% |
| ! | GACTGTGGTGGGAAAACAGT+GGG | + | tig0027306:40445-40464 | Msa1433440:intron | 50.0% |
| AAGGGAAAAGGAAGTGGGGT+TGG | - | tig0027306:40598-40617 | None:intergenic | 50.0% | |
| ! | TCTTGTGATGGGATGCCTCA+GGG | + | tig0027306:40732-40751 | Msa1433440:intron | 50.0% |
| !! | GCAGGGGAGCATCTTTAGTT+GGG | - | tig0027306:41034-41053 | None:intergenic | 50.0% |
| !! | TGCAGGGGAGCATCTTTAGT+TGG | - | tig0027306:41035-41054 | None:intergenic | 50.0% |
| CGAGCCAGTTTACTCTTGTG+TGG | - | tig0027306:41941-41960 | None:intergenic | 50.0% | |
| GAATCCCCTTATGACCGTGA+TGG | + | tig0027306:42166-42185 | Msa1433440:CDS | 50.0% | |
| CAATTTCGATCCTTCACCGG+AGG | + | tig0027306:42270-42289 | Msa1433440:CDS | 50.0% | |
| ACAATTGCTACCTCCGGTGA+AGG | - | tig0027306:42283-42302 | None:intergenic | 50.0% | |
| GCTGCAACAATTGCTACCTC+CGG | - | tig0027306:42289-42308 | None:intergenic | 50.0% | |
| ! | TCCGGTGTCGGAAAACACCT+GGG | + | tig0027306:40208-40227 | Msa1433440:intron | 55.0% |
| ! | ACCCAGGTGTTTTCCGACAC+CGG | - | tig0027306:40212-40231 | None:intergenic | 55.0% |
| CCCCAAAAGCTATGTCACCC+AGG | + | tig0027306:40315-40334 | Msa1433440:intron | 55.0% | |
| ! | CTCTTGTGATGGGATGCCTC+AGG | + | tig0027306:40731-40750 | Msa1433440:intron | 55.0% |
| ! | CTTGTGATGGGATGCCTCAG+GGG | + | tig0027306:40733-40752 | Msa1433440:intron | 55.0% |
| GAAGGGCTCAGGGAATCCTA+AGG | + | tig0027306:40896-40915 | Msa1433440:intron | 55.0% | |
| ! | GTCCGGTGTCGGAAAACACC+TGG | + | tig0027306:40207-40226 | Msa1433440:intron | 60.0% |
| ! | ACCCAGGTGCTATCCGTGTC+CGG | + | tig0027306:40331-40350 | Msa1433440:intron | 60.0% |
| ACCGGACACGGATAGCACCT+GGG | - | tig0027306:40335-40354 | None:intergenic | 60.0% | |
| TACCGGACACGGATAGCACC+TGG | - | tig0027306:40336-40355 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027306 | gene | 39314 | 43269 | 39314 | ID=Msa1433440;Name=Msa1433440 |
| tig0027306 | mRNA | 39314 | 43269 | 39314 | ID=Msa1433440-mRNA-1;Parent=Msa1433440;Name=Msa1433440-mRNA-1;_AED=0.15;_eAED=0.15;_QI=285|0.66|0.5|1|0.66|0.75|4|0|397 |
| tig0027306 | exon | 39314 | 39537 | 39314 | ID=Msa1433440-mRNA-1:exon:8652;Parent=Msa1433440-mRNA-1 |
| tig0027306 | exon | 39908 | 39968 | 39908 | ID=Msa1433440-mRNA-1:exon:8653;Parent=Msa1433440-mRNA-1 |
| tig0027306 | exon | 41908 | 42636 | 41908 | ID=Msa1433440-mRNA-1:exon:8654;Parent=Msa1433440-mRNA-1 |
| tig0027306 | exon | 42805 | 43269 | 42805 | ID=Msa1433440-mRNA-1:exon:8655;Parent=Msa1433440-mRNA-1 |
| tig0027306 | five_prime_UTR | 39314 | 39537 | 39314 | ID=Msa1433440-mRNA-1:five_prime_utr;Parent=Msa1433440-mRNA-1 |
| tig0027306 | five_prime_UTR | 39908 | 39968 | 39908 | ID=Msa1433440-mRNA-1:five_prime_utr;Parent=Msa1433440-mRNA-1 |
| tig0027306 | CDS | 41908 | 42636 | 41908 | ID=Msa1433440-mRNA-1:cds;Parent=Msa1433440-mRNA-1 |
| tig0027306 | CDS | 42805 | 43269 | 42805 | ID=Msa1433440-mRNA-1:cds;Parent=Msa1433440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
