AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0766090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766090 MtrunA17_Chr5g0417111 84.314 918 63 7 5 876 26 908 0.0 1390
Msa0766090 MtrunA17_Chr8g0361681 60.051 393 133 8 499 876 452 835 1.01e-139 436
Msa0766090 MtrunA17_Chr7g0217181 43.568 482 223 15 417 876 290 744 4.77e-108 349
Msa0766090 MtrunA17_Chr8g0361691 55.556 171 63 5 627 787 1 168 3.35e-44 157
Msa0766090 MtrunA17_Chr4g0000281 29.782 413 223 13 488 876 55 424 1.77e-31 128
Msa0766090 MtrunA17_Chr8g0391071 30.620 258 155 6 632 876 315 561 2.49e-22 102
Msa0766090 MtrunA17_Chr6g0484451 31.100 209 110 7 564 760 305 491 4.48e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766090 AT5G39785.1 41.505 412 199 13 494 876 207 605 2.63e-93 306
Msa0766090 AT5G39785.3 41.505 412 199 13 494 876 207 605 2.63e-93 306
Msa0766090 AT5G39785.5 41.505 412 199 13 494 876 207 605 2.63e-93 306
Msa0766090 AT5G39785.2 41.162 413 200 14 494 876 207 606 6.10e-91 300
Msa0766090 AT1G69610.3 45.340 397 179 10 495 876 218 591 5.71e-90 297
Msa0766090 AT1G69610.1 45.340 397 179 10 495 876 262 635 4.64e-89 296
Msa0766090 AT1G69610.2 45.340 397 179 10 495 876 263 636 5.44e-89 296
Msa0766090 AT5G39785.4 39.130 437 199 14 494 876 207 630 9.05e-88 292
Msa0766090 AT3G20260.1 31.045 335 188 12 564 876 123 436 1.20e-29 123
Msa0766090 AT1G73850.2 27.660 329 210 9 564 876 317 633 1.18e-25 113
Msa0766090 AT1G73850.1 27.660 329 210 9 564 876 317 633 1.18e-25 113
Msa0766090 AT3G01175.1 28.779 344 184 15 564 876 262 575 2.51e-20 96.7

Find 157 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTCTTTGTATGCATTT+TGG 0.094036 5_2:+27499298 None:intergenic
AGTTTGGTTGGATTTGATTA+TGG 0.167143 5_2:-27500606 Msa0766090:five_prime_UTR
GTTCGAACAGATAAAGAAAA+TGG 0.172724 5_2:-27496402 Msa0766090:CDS
TTTGAAGCATAATTTGTATT+TGG 0.174654 5_2:+27500788 None:intergenic
CCATTTGAGATGGTGGATTT+TGG 0.181688 5_2:+27497549 None:intergenic
GTTGGTCCTCATGGTGCTTT+TGG 0.185637 5_2:+27495460 None:intergenic
CTTCATGTTCCAGCTATTAA+AGG 0.195836 5_2:-27497198 Msa0766090:intron
CTTTATCATCAAATGAAAAT+TGG 0.208295 5_2:+27498953 None:intergenic
TTTAAAAGATCATGAGATTA+AGG 0.248739 5_2:-27499553 Msa0766090:CDS
AAGAATCAATGCGTGTGTTT+TGG 0.250995 5_2:-27496431 Msa0766090:CDS
TGTTTCAGGTTTCTTAAATT+AGG 0.252942 5_2:-27500323 Msa0766090:CDS
CATCCTAGTTATCTAATAAA+TGG 0.278068 5_2:-27495128 Msa0766090:three_prime_UTR
TTTAATTCTTCAACCACTTT+TGG 0.284097 5_2:+27498622 None:intergenic
CCATACTCTTAACTTTGTTA+TGG 0.298298 5_2:-27500666 Msa0766090:five_prime_UTR
GTTTGGTTGGATTTGATTAT+GGG 0.300673 5_2:-27500605 Msa0766090:five_prime_UTR
TTATTCCACAAGTTGGAAAA+AGG 0.303261 5_2:-27500761 Msa0766090:five_prime_UTR
TCATCAACTTTATATAGATT+TGG 0.303444 5_2:-27497457 Msa0766090:CDS
CTAAATTGGTTGAATCAATA+TGG 0.311123 5_2:+27495270 None:intergenic
AAATGGCAAGAGAAATTAAA+AGG 0.333084 5_2:-27495111 Msa0766090:three_prime_UTR
TCCTGAATGTATCAACTTCA+TGG 0.336668 5_2:+27494728 None:intergenic
CTCAGATTCTTCTTGAGGTT+TGG 0.336704 5_2:-27500426 Msa0766090:five_prime_UTR
AATTATGTGTTCTATTCATT+TGG 0.341860 5_2:-27500456 Msa0766090:five_prime_UTR
AGCTTTGTTTGCTTGGAAAA+TGG 0.342132 5_2:-27499882 Msa0766090:CDS
CTGGAGCAACAGCAACAAAA+TGG 0.343164 5_2:-27499073 Msa0766090:CDS
CAAATAGGTAAACTGCCTAA+TGG 0.353262 5_2:-27501017 Msa0766090:five_prime_UTR
GGTATTGAAATTAATTTAAG+AGG 0.353651 5_2:+27497570 None:intergenic
CTAGTTCAAGTGGTCTAATC+TGG 0.355957 5_2:-27499092 Msa0766090:CDS
TGCAACCTTCCACTTGCAAT+TGG 0.357673 5_2:+27496465 None:intergenic
TCCATGAAGTTGATACATTC+AGG 0.358496 5_2:-27494729 Msa0766090:three_prime_UTR
AATGAAGAGCTTTGTTTGCT+TGG 0.359072 5_2:-27499889 Msa0766090:CDS
ACCTATTTGTTCACTTAACT+TGG 0.359962 5_2:+27501031 None:intergenic
AGATGAAGGAATAGAAGATT+TGG 0.361190 5_2:-27498983 Msa0766090:CDS
CCATAACAAAGTTAAGAGTA+TGG 0.370759 5_2:+27500666 None:intergenic
TTTGCTACCAAGAAACTCAT+AGG 0.381015 5_2:+27499038 None:intergenic
AATGTGATTTCTAAGCAAAT+TGG 0.382028 5_2:-27496372 Msa0766090:CDS
TAAAGAATCGTTGTGTGATT+AGG 0.384028 5_2:-27497227 Msa0766090:CDS
ACTTTATATAGATTTGGAAT+TGG 0.394569 5_2:-27497451 Msa0766090:CDS
GATGAATTTGTTCAAGAAGA+TGG 0.396227 5_2:-27499984 Msa0766090:CDS
AAATAGGTAAACTGCCTAAT+GGG 0.398325 5_2:-27501016 Msa0766090:five_prime_UTR
AAAAGATATAAGTTGCTTTG+TGG 0.399117 5_2:-27499388 Msa0766090:CDS
GATTTGGAATTGGTATATGT+TGG 0.401399 5_2:-27497441 Msa0766090:CDS
TTTACATAATTCTGAATCCT+TGG 0.404409 5_2:+27497246 None:intergenic
CCAACTTGATCATGAGCAAT+TGG 0.406727 5_2:-27495442 Msa0766090:CDS
AAAGATCTTATTCCACAAGT+TGG 0.415099 5_2:-27500768 Msa0766090:five_prime_UTR
TTGGATTGCGATTGATTTCA+AGG 0.415118 5_2:-27495410 Msa0766090:CDS
AATACTGATTGATTCCCATT+AGG 0.419183 5_2:+27501002 None:intergenic
TCTTGTGTGGCATACAAGTT+TGG 0.421420 5_2:-27495077 Msa0766090:three_prime_UTR
AGCTTCACTTCAATCTTCAA+TGG 0.422108 5_2:+27498598 None:intergenic
AAGTGAAAGGTTTGTTTCCA+TGG 0.424249 5_2:-27499940 Msa0766090:CDS
CATAGGTATAACCATGTTGC+TGG 0.424551 5_2:-27497333 Msa0766090:CDS
TATCAAACCATGCATGCATT+AGG 0.425507 5_2:-27498493 Msa0766090:intron
TGAGAAAAGAACAAGTACTA+TGG 0.427979 5_2:-27495368 Msa0766090:CDS
GTATTCGAATGTCCACTAGA+AGG 0.428041 5_2:+27496319 None:intergenic
CCAAAATCCACCATCTCAAA+TGG 0.430562 5_2:-27497549 Msa0766090:CDS
AATAGATGAGAAGGATATAG+AGG 0.431459 5_2:-27499583 Msa0766090:CDS
AAACTGAATCGCAATGTTGT+TGG 0.431487 5_2:+27499360 None:intergenic
TCCAAGTTAAGTGAACAAAT+AGG 0.431689 5_2:-27501032 Msa0766090:five_prime_UTR
TTGGACAAATTTGCCTCTCA+TGG 0.432910 5_2:-27497422 Msa0766090:CDS
TGAAAATGAGTATATAGAAA+TGG 0.433374 5_2:-27498899 Msa0766090:CDS
ATCCTTGGTCCACCTTGAAA+TGG 0.434484 5_2:+27497261 None:intergenic
AACTCTAATGTTCATGAAGA+TGG 0.434844 5_2:-27499783 Msa0766090:CDS
CTGAAGGACATAGTAAGAAC+TGG 0.437425 5_2:-27495504 Msa0766090:CDS
AAAGATGAAAAGGAAATAGA+AGG 0.441294 5_2:-27499690 Msa0766090:CDS
GCTAGAATTCAATGATCAAA+TGG 0.452356 5_2:-27498578 Msa0766090:CDS
TTCAACTTCTTCTATGATTG+TGG 0.458028 5_2:+27498684 None:intergenic
TGGGAAACGGTTGAAACATC+AGG 0.458060 5_2:+27499318 None:intergenic
GGCTTTGAGAGCGAGGTGTT+TGG 0.462606 5_2:-27499192 Msa0766090:CDS
CATTCGAATACAACTACAAA+AGG 0.463325 5_2:-27496307 Msa0766090:intron
TTGCCATTTATTAGATAACT+AGG 0.463824 5_2:+27495125 None:intergenic
GTGTGGCATACAAGTTTGGC+TGG 0.466450 5_2:-27495073 Msa0766090:three_prime_UTR
GAAGATGGAGGAAAATTTGA+AGG 0.467214 5_2:-27499768 Msa0766090:CDS
ATAAAATGATATACTAGCTT+AGG 0.467935 5_2:-27495226 Msa0766090:three_prime_UTR
TTCGAACAGATAAAGAAAAT+GGG 0.468460 5_2:-27496401 Msa0766090:CDS
ATAGAGAATGAGCCATTTCA+AGG 0.469644 5_2:-27497273 Msa0766090:CDS
ACTCACAACAAAGGTCTCAT+AGG 0.472122 5_2:-27497350 Msa0766090:CDS
GAATAATCTCTCAAAATTTG+TGG 0.472353 5_2:-27497527 Msa0766090:CDS
ATTTCAATTTCATGAACAGT+TGG 0.477035 5_2:+27499909 None:intergenic
AATATGTCACCTTTAATAGC+TGG 0.480683 5_2:+27497189 None:intergenic
ATTAGAGTTATTCTCCCCTA+TGG 0.483772 5_2:+27499797 None:intergenic
AAAAGTGAAGAGGAATTGAA+TGG 0.487614 5_2:-27498802 Msa0766090:CDS
GTCTCTGATGTTACTGAAGA+TGG 0.488309 5_2:-27499612 Msa0766090:CDS
AATGAGAATGTAAATGAAGA+TGG 0.489169 5_2:-27499720 Msa0766090:CDS
AACCATTCATAGTGGAAAAG+TGG 0.489671 5_2:+27500735 None:intergenic
CATGATCAAGTTGGTCCTCA+TGG 0.490699 5_2:+27495451 None:intergenic
TGATAGTAAAGGAGGTGAGG+AGG 0.491322 5_2:-27496490 Msa0766090:CDS
TTTATTATATATAAAGTGCA+TGG 0.491644 5_2:-27500371 Msa0766090:five_prime_UTR
TTCAAAATTTGAAGTTGATG+AGG 0.491898 5_2:-27498929 Msa0766090:CDS
GATTATTCCATTTGAGATGG+TGG 0.492227 5_2:+27497542 None:intergenic
ACAGATAAAGAAAATGGGAA+TGG 0.495621 5_2:-27496396 Msa0766090:CDS
CAGATAAAGAAAATGGGAAT+GGG 0.495903 5_2:-27496395 Msa0766090:CDS
ATGGGAGCATGAAGAAATAG+TGG 0.496187 5_2:-27498752 Msa0766090:CDS
GAGCAATTGGTTGCTCAAGT+TGG 0.497738 5_2:-27495429 Msa0766090:CDS
AGAAATGGAACCTCATATGA+AGG 0.501310 5_2:-27498884 Msa0766090:CDS
ATCAAATCAACCATTCATAG+TGG 0.512972 5_2:+27500727 None:intergenic
TCATACTCAGATTCTTCTTG+AGG 0.513731 5_2:-27500431 Msa0766090:five_prime_UTR
AATGTATCAACTTCATGGAA+TGG 0.515115 5_2:+27494733 None:intergenic
AGATGATAGTAAAGGAGGTG+AGG 0.520728 5_2:-27496493 Msa0766090:CDS
AAAATCTTCTCCTACAATCT+CGG 0.520935 5_2:-27500825 Msa0766090:five_prime_UTR
AGGAATGGAGCTAGGAATGT+AGG 0.522773 5_2:-27494709 None:intergenic
TTCAAGACCATGTTCTTCAA+AGG 0.524540 5_2:+27498852 None:intergenic
GAAATAAGAGAGCATGCCAT+AGG 0.526579 5_2:-27499813 Msa0766090:CDS
GTTCTCACCTAATGCATGCA+TGG 0.527529 5_2:+27498486 None:intergenic
AGAGATTATTCCATTTGAGA+TGG 0.527855 5_2:+27497539 None:intergenic
GAGATTAAGGTTCAAGATGA+TGG 0.532953 5_2:-27499540 Msa0766090:intron
TAATAGCTGGAACATGAAGC+AGG 0.539080 5_2:+27497202 None:intergenic
GTATTGAAATTAATTTAAGA+GGG 0.545143 5_2:+27497571 None:intergenic
TGGACAAATTTGCCTCTCAT+GGG 0.546353 5_2:-27497421 Msa0766090:CDS
AGAGCTATGCAGAGAAAATG+AGG 0.547615 5_2:-27498534 Msa0766090:CDS
TGTTCAAGAAGATGGCGGTA+AGG 0.548460 5_2:-27499976 Msa0766090:CDS
AAATAAGAGAGCATGCCATA+GGG 0.549229 5_2:-27499812 Msa0766090:CDS
TGGTAACAAAATAGATGAGA+AGG 0.553137 5_2:-27499592 Msa0766090:CDS
TTGAAAACCTTTGAAGAACA+TGG 0.557356 5_2:-27498859 Msa0766090:CDS
AAGTTGATGATGAGAGATGA+AGG 0.557662 5_2:-27498997 Msa0766090:CDS
AGGAATGAAGAAAAGTGAAG+AGG 0.559387 5_2:-27498812 Msa0766090:CDS
CCAATTGCTCATGATCAAGT+TGG 0.562526 5_2:+27495442 None:intergenic
TCCACATGGCTTTGAGAGCG+AGG 0.564370 5_2:-27499199 Msa0766090:CDS
CCATCACATTCACTTGGTGA+TGG 0.566199 5_2:-27500272 Msa0766090:CDS
TGCAATTTCAAACCTTCTAG+TGG 0.567153 5_2:-27496331 Msa0766090:CDS
TCAGAATCATCTAGTTCAAG+TGG 0.570109 5_2:-27499102 Msa0766090:CDS
TACTTAAGAAAACTCTACAT+TGG 0.571722 5_2:-27500564 Msa0766090:five_prime_UTR
AATTCACCATCACATTCACT+TGG 0.572296 5_2:-27500278 Msa0766090:CDS
GAAGTTGATACATTCAGGAA+TGG 0.573118 5_2:-27494724 Msa0766090:three_prime_UTR
TGGATTGCGATTGATTTCAA+GGG 0.573227 5_2:-27495409 Msa0766090:CDS
CTCAAAGCCATGTGGAACAT+CGG 0.574342 5_2:+27499206 None:intergenic
AACAGTTGGATGATTCTCCA+TGG 0.576283 5_2:+27499923 None:intergenic
ATACATTCAGGAATGGAGCT+AGG 0.577528 5_2:-27494717 Msa0766090:three_prime_UTR
GAAATGGAACCTCATATGAA+GGG 0.582942 5_2:-27498883 Msa0766090:CDS
CATTCAACCGATGTTCCACA+TGG 0.587101 5_2:-27499213 Msa0766090:CDS
TTTGAGAGCGAGGTGTTTGG+TGG 0.588776 5_2:-27499189 Msa0766090:CDS
TTCTTAGATGATAGTAAAGG+AGG 0.591113 5_2:-27496498 Msa0766090:intron
AGGATCCAATTGCAAGTGGA+AGG 0.591596 5_2:-27496470 Msa0766090:CDS
AACAATATGACTCACAACAA+AGG 0.591948 5_2:-27497359 Msa0766090:CDS
AACATAAGATTTCCCATGAG+AGG 0.593117 5_2:+27497409 None:intergenic
AAAATGAAGAGGTAAGTGAA+AGG 0.593375 5_2:-27499953 Msa0766090:CDS
TGTGAAAACAGAGATATATG+TGG 0.593704 5_2:-27500072 Msa0766090:CDS
TCTCATGGGAAATCTTATGT+TGG 0.599410 5_2:-27497407 Msa0766090:CDS
TGATTCTTAGATGATAGTAA+AGG 0.600208 5_2:-27496501 Msa0766090:intron
ATTGCGATTGATTTCAAGGG+TGG 0.601997 5_2:-27495406 Msa0766090:CDS
GAGTGTGAAATACATGAAGA+GGG 0.604673 5_2:-27500026 Msa0766090:CDS
AAGCAGGAAGATTGTCCATG+TGG 0.609998 5_2:-27495313 Msa0766090:CDS
TGGCGGTAAGGAAAATGAAG+AGG 0.610513 5_2:-27499964 Msa0766090:CDS
GAGGAGGATCCAATTGCAAG+TGG 0.618801 5_2:-27496474 Msa0766090:CDS
AGCCATTTCAAGGTGGACCA+AGG 0.623624 5_2:-27497263 Msa0766090:CDS
TCTAATGTTCATGAAGATGG+AGG 0.627681 5_2:-27499780 Msa0766090:CDS
TGAGTGTGAAATACATGAAG+AGG 0.633059 5_2:-27500027 Msa0766090:CDS
ACCTCGCTCTCAAAGCCATG+TGG 0.637754 5_2:+27499198 None:intergenic
AATAAGAGAGCATGCCATAG+GGG 0.647744 5_2:-27499811 Msa0766090:CDS
ATAACTAGGATGTATGAGCA+AGG 0.658102 5_2:+27495139 None:intergenic
GTTGAAACTCACCAGCAACA+TGG 0.660906 5_2:+27497322 None:intergenic
GAATCAATCAGTATTAGTAA+CGG 0.664486 5_2:-27500994 Msa0766090:five_prime_UTR
TTGAAGAATTCAAGACAAGG+AGG 0.678769 5_2:-27498712 Msa0766090:CDS
GAATTTGTTCAAGAAGATGG+CGG 0.685285 5_2:-27499981 Msa0766090:CDS
CCATCACCAAGTGAATGTGA+TGG 0.687180 5_2:+27500272 None:intergenic
GGTAGTGCAATGTTCTTGTG+TGG 0.712186 5_2:-27495090 Msa0766090:three_prime_UTR
GAGAATGAGCCATTTCAAGG+TGG 0.715727 5_2:-27497270 Msa0766090:CDS
GAAGTTCCAAAAGCACCATG+AGG 0.720836 5_2:-27495466 Msa0766090:CDS
GAATTGAAGAATTCAAGACA+AGG 0.733492 5_2:-27498715 Msa0766090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTATAAGAGTAATTA+TGG - chr5_2:27498675-27498694 Msa0766090:CDS 10.0%
!! TAAATTTAGTATGTAAAAAA+AGG + chr5_2:27499116-27499135 None:intergenic 10.0%
!!! TAGTTTTAAAAGTTATATTT+TGG + chr5_2:27500856-27500875 None:intergenic 10.0%
!!! ATAATCTTTTTTCAAAAGTT+TGG - chr5_2:27495120-27495139 Msa0766090:three_prime_UTR 15.0%
!! TTTATTATATATAAAGTGCA+TGG - chr5_2:27495371-27495390 Msa0766090:CDS 15.0%
!! CATAATTAGTAAAATATGTT+GGG + chr5_2:27497613-27497632 None:intergenic 15.0%
!! ACATAATTAGTAAAATATGT+TGG + chr5_2:27497614-27497633 None:intergenic 15.0%
!! AAATAAACAAGATATCTTTA+TGG + chr5_2:27497639-27497658 None:intergenic 15.0%
!! AATTAGTCATAATAATCAAA+TGG + chr5_2:27498106-27498125 None:intergenic 15.0%
!! GTATTGAAATTAATTTAAGA+GGG + chr5_2:27498174-27498193 None:intergenic 15.0%
!!! TTGATAAGATACTATTTTTT+AGG + chr5_2:27498609-27498628 None:intergenic 15.0%
!!! TTAATAGGAGAATATTTTAT+AGG - chr5_2:27499139-27499158 Msa0766090:CDS 15.0%
!!! ATTTTACAAATTGATTTTAG+TGG - chr5_2:27499603-27499622 Msa0766090:CDS 15.0%
!!! TTTTCTGAATCTTAAAAAAA+TGG - chr5_2:27499914-27499933 Msa0766090:CDS 15.0%
!!! TTTTTAGAAACTTATTTTCT+TGG - chr5_2:27499962-27499981 Msa0766090:CDS 15.0%
!!! AAAAAAGTATATCTCTAAAT+TGG + chr5_2:27500489-27500508 None:intergenic 15.0%
!!! TCATTTTGAAACAATTTTTT+TGG + chr5_2:27500754-27500773 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr5_2:27500880-27500899 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr5_2:27500879-27500898 Msa0766090:five_prime_UTR 15.0%
!!! TTTGAAGCATAATTTGTATT+TGG + chr5_2:27494957-27494976 None:intergenic 20.0%
!!! GTTTTCTTAAGTATGAAAAA+TGG + chr5_2:27495171-27495190 None:intergenic 20.0%
!!! CAATATATATTGTTTTGTGA+AGG - chr5_2:27495207-27495226 Msa0766090:three_prime_UTR 20.0%
!! AATTATGTGTTCTATTCATT+TGG - chr5_2:27495286-27495305 Msa0766090:CDS 20.0%
!!! TAATTTTCTTTTGCTTTTTG+AGG - chr5_2:27495340-27495359 Msa0766090:CDS 20.0%
!!! TGTTTTGTTTATTTTGTTTC+AGG - chr5_2:27495405-27495424 Msa0766090:CDS 20.0%
!! TTTAAAAGATCATGAGATTA+AGG - chr5_2:27496189-27496208 Msa0766090:intron 20.0%
!! CTTTATCATCAAATGAAAAT+TGG + chr5_2:27496792-27496811 None:intergenic 20.0%
!! TGAAAATGAGTATATAGAAA+TGG - chr5_2:27496843-27496862 Msa0766090:intron 20.0%
!!! TTATTTTTCTCACTTCTTAT+TGG + chr5_2:27497781-27497800 None:intergenic 20.0%
!! AATAAGAAGTGAGAAAAATA+AGG - chr5_2:27497780-27497799 Msa0766090:intron 20.0%
!! AGCATATAATAAAGTTAAGT+AGG - chr5_2:27498019-27498038 Msa0766090:intron 20.0%
!!! GGTATTGAAATTAATTTAAG+AGG + chr5_2:27498175-27498194 None:intergenic 20.0%
!!! GATGAACAAGTTTTAAAAAT+GGG + chr5_2:27498270-27498289 None:intergenic 20.0%
!!! TGATGAACAAGTTTTAAAAA+TGG + chr5_2:27498271-27498290 None:intergenic 20.0%
!! TCATCAACTTTATATAGATT+TGG - chr5_2:27498285-27498304 Msa0766090:intron 20.0%
!!! ACTTTATATAGATTTGGAAT+TGG - chr5_2:27498291-27498310 Msa0766090:intron 20.0%
!!! CAAATGATTTTTCTCTATAT+TGG + chr5_2:27498770-27498789 None:intergenic 20.0%
!! ATGATCACTATATAATGTAT+GGG + chr5_2:27499022-27499041 None:intergenic 20.0%
!! TATGATCACTATATAATGTA+TGG + chr5_2:27499023-27499042 None:intergenic 20.0%
!!! TTAGAATTGAATTGATTCTA+AGG - chr5_2:27499632-27499651 Msa0766090:CDS 20.0%
!!! ATTTTATGAGTTAGTTTTGT+AGG - chr5_2:27499712-27499731 Msa0766090:CDS 20.0%
!! CTCAAATGATTTATAACAAA+TGG + chr5_2:27499838-27499857 None:intergenic 20.0%
!!! AATTTTTTTGCTCTTTAAGA+GGG + chr5_2:27500088-27500107 None:intergenic 20.0%
!!! ATAAAATGATATACTAGCTT+AGG - chr5_2:27500516-27500535 Msa0766090:five_prime_UTR 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr5_2:27500793-27500812 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr5_2:27500870-27500889 Msa0766090:five_prime_UTR 20.0%
! GAATCAATCAGTATTAGTAA+CGG - chr5_2:27494748-27494767 Msa0766090:three_prime_UTR 25.0%
!!! AGATTTTGATTTGTATGACT+TGG + chr5_2:27494832-27494851 None:intergenic 25.0%
! AAAAAAAAAACCGAGATTGT+AGG + chr5_2:27494930-27494949 None:intergenic 25.0%
!!! ACAATCTCGGTTTTTTTTTT+TGG - chr5_2:27494930-27494949 Msa0766090:intron 25.0%
!!! ACTTTGTTATGGAGATTTTA+TGG - chr5_2:27495087-27495106 Msa0766090:three_prime_UTR 25.0%
!!! CTTTGTTATGGAGATTTTAT+GGG - chr5_2:27495088-27495107 Msa0766090:three_prime_UTR 25.0%
!!! TCTTTTTTCAAAAGTTTGGT+TGG - chr5_2:27495124-27495143 Msa0766090:three_prime_UTR 25.0%
! TACTTAAGAAAACTCTACAT+TGG - chr5_2:27495178-27495197 Msa0766090:three_prime_UTR 25.0%
!!! TTTGAATTTTGTTTCTGTGA+GGG - chr5_2:27495252-27495271 Msa0766090:three_prime_UTR 25.0%
!!! TGTTTCAGGTTTCTTAAATT+AGG - chr5_2:27495419-27495438 Msa0766090:CDS 25.0%
!! TGGAAATTTTCATGATTTCA+AGG - chr5_2:27495490-27495509 Msa0766090:CDS 25.0%
!!! AGTTGTCTAATTTCCTTTTT+TGG - chr5_2:27495531-27495550 Msa0766090:intron 25.0%
! ATTTCAATTTCATGAACAGT+TGG + chr5_2:27495836-27495855 None:intergenic 25.0%
! AATGAGAATGTAAATGAAGA+TGG - chr5_2:27496022-27496041 Msa0766090:intron 25.0%
! TGGTATGAAAAAAGATGAAA+AGG - chr5_2:27496042-27496061 Msa0766090:intron 25.0%
! AAAGATGAAAAGGAAATAGA+AGG - chr5_2:27496052-27496071 Msa0766090:intron 25.0%
! AAATGGATGAAATTGAAACA+AGG - chr5_2:27496230-27496249 Msa0766090:intron 25.0%
! AATGGATGAAATTGAAACAA+GGG - chr5_2:27496231-27496250 Msa0766090:intron 25.0%
! ATAAAACAGAACAAGAAACA+GGG - chr5_2:27496293-27496312 Msa0766090:intron 25.0%
!! AAAAGATATAAGTTGCTTTG+TGG - chr5_2:27496354-27496373 Msa0766090:CDS 25.0%
!! AAACTCTTTGTATGCATTTT+GGG + chr5_2:27496446-27496465 None:intergenic 25.0%
!! AAAACTCTTTGTATGCATTT+TGG + chr5_2:27496447-27496466 None:intergenic 25.0%
!!! TTCAAAATTTGAAGTTGATG+AGG - chr5_2:27496813-27496832 Msa0766090:intron 25.0%
!! TGATGAAGATGATTTTGAAT+GGG - chr5_2:27496972-27496991 Msa0766090:intron 25.0%
!! TTTAATTCTTCAACCACTTT+TGG + chr5_2:27497123-27497142 None:intergenic 25.0%
! TGACTTCAATCTACAATATT+TGG + chr5_2:27497446-27497465 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr5_2:27497768-27497787 None:intergenic 25.0%
!! ATCTTTTTCCTATTCTTCAT+AGG - chr5_2:27497918-27497937 Msa0766090:intron 25.0%
! AGGTCTACTTTATATACTAA+AGG - chr5_2:27497938-27497957 Msa0766090:intron 25.0%
! GAATAATCTCTCAAAATTTG+TGG - chr5_2:27498215-27498234 Msa0766090:intron 25.0%
!!! TTTTTCAAGTATTGATGCAA+AGG - chr5_2:27498443-27498462 Msa0766090:intron 25.0%
! TTTACATAATTCTGAATCCT+TGG + chr5_2:27498499-27498518 None:intergenic 25.0%
! TGATCACTATATAATGTATG+GGG + chr5_2:27499021-27499040 None:intergenic 25.0%
! TGATTCTTAGATGATAGTAA+AGG - chr5_2:27499241-27499260 Msa0766090:CDS 25.0%
! TTCGAACAGATAAAGAAAAT+GGG - chr5_2:27499341-27499360 Msa0766090:CDS 25.0%
! AATGTGATTTCTAAGCAAAT+TGG - chr5_2:27499370-27499389 Msa0766090:CDS 25.0%
! AGTGTAAACATAAAAAGTGA+TGG + chr5_2:27499477-27499496 None:intergenic 25.0%
!!! TTGTGTGTGTGTTTTTTTTT+TGG - chr5_2:27499509-27499528 Msa0766090:intron 25.0%
! CAGATTATGTTTATGTTTAG+CGG - chr5_2:27499881-27499900 Msa0766090:CDS 25.0%
!!! CAATTTTTTTGCTCTTTAAG+AGG + chr5_2:27500089-27500108 None:intergenic 25.0%
! TCCTGCTTAAAAATTTGATT+CGG + chr5_2:27500417-27500436 None:intergenic 25.0%
! TATGGAAAAAGCAAAAAAGA+AGG + chr5_2:27500457-27500476 None:intergenic 25.0%
! CTAAATTGGTTGAATCAATA+TGG + chr5_2:27500475-27500494 None:intergenic 25.0%
! CATCCTAGTTATCTAATAAA+TGG - chr5_2:27500614-27500633 Msa0766090:five_prime_UTR 25.0%
!! TTGCCATTTATTAGATAACT+AGG + chr5_2:27500620-27500639 None:intergenic 25.0%
! AAATGGCAAGAGAAATTAAA+AGG - chr5_2:27500631-27500650 Msa0766090:five_prime_UTR 25.0%
! AATGATTAAGAGAAAGAGAA+TGG + chr5_2:27500913-27500932 None:intergenic 25.0%
TCCAAGTTAAGTGAACAAAT+AGG - chr5_2:27494710-27494729 Msa0766090:three_prime_UTR 30.0%
ACCTATTTGTTCACTTAACT+TGG + chr5_2:27494714-27494733 None:intergenic 30.0%
AAATAGGTAAACTGCCTAAT+GGG - chr5_2:27494726-27494745 Msa0766090:three_prime_UTR 30.0%
! AATACTGATTGATTCCCATT+AGG + chr5_2:27494743-27494762 None:intergenic 30.0%
AAAATCTTCTCCTACAATCT+CGG - chr5_2:27494917-27494936 Msa0766090:intron 30.0%
AAAGATCTTATTCCACAAGT+TGG - chr5_2:27494974-27494993 Msa0766090:intron 30.0%
! TTATTCCACAAGTTGGAAAA+AGG - chr5_2:27494981-27495000 Msa0766090:intron 30.0%
ATCAAATCAACCATTCATAG+TGG + chr5_2:27495018-27495037 None:intergenic 30.0%
CCATAACAAAGTTAAGAGTA+TGG + chr5_2:27495079-27495098 None:intergenic 30.0%
CCATACTCTTAACTTTGTTA+TGG - chr5_2:27495076-27495095 Msa0766090:three_prime_UTR 30.0%
AGTTTGGTTGGATTTGATTA+TGG - chr5_2:27495136-27495155 Msa0766090:three_prime_UTR 30.0%
GTTTGGTTGGATTTGATTAT+GGG - chr5_2:27495137-27495156 Msa0766090:three_prime_UTR 30.0%
!!! CTTTGAATTTTGTTTCTGTG+AGG - chr5_2:27495251-27495270 Msa0766090:three_prime_UTR 30.0%
GAAAATCATCACTCCAAAAA+AGG + chr5_2:27495547-27495566 None:intergenic 30.0%
TGTGAAAACAGAGATATATG+TGG - chr5_2:27495670-27495689 Msa0766090:intron 30.0%
!!! TGTGGAGAGTATTTTATCAA+AGG - chr5_2:27495688-27495707 Msa0766090:intron 30.0%
! GATGAATTTGTTCAAGAAGA+TGG - chr5_2:27495758-27495777 Msa0766090:intron 30.0%
AAAATGAAGAGGTAAGTGAA+AGG - chr5_2:27495789-27495808 Msa0766090:intron 30.0%
AACTCTAATGTTCATGAAGA+TGG - chr5_2:27495959-27495978 Msa0766090:intron 30.0%
TGGTAACAAAATAGATGAGA+AGG - chr5_2:27496150-27496169 Msa0766090:intron 30.0%
AATAGATGAGAAGGATATAG+AGG - chr5_2:27496159-27496178 Msa0766090:intron 30.0%
! TCAAGATGATGGTAAGAAAA+TGG - chr5_2:27496213-27496232 Msa0766090:intron 30.0%
TTTATGATCATGAACATCGA+AGG + chr5_2:27496278-27496297 None:intergenic 30.0%
CATAAAACAGAACAAGAAAC+AGG - chr5_2:27496292-27496311 Msa0766090:intron 30.0%
TAAAACAGAACAAGAAACAG+GGG - chr5_2:27496294-27496313 Msa0766090:intron 30.0%
!! TTTGTATGCATTTTGGGAAA+CGG + chr5_2:27496440-27496459 None:intergenic 30.0%
! TCATTTTCCTATGAGTTTCT+TGG - chr5_2:27496697-27496716 Msa0766090:intron 30.0%
AGATGAAGGAATAGAAGATT+TGG - chr5_2:27496759-27496778 Msa0766090:intron 30.0%
! TTGAAAACCTTTGAAGAACA+TGG - chr5_2:27496883-27496902 Msa0766090:intron 30.0%
GAAGTGAAAGATGAAAAAGA+AGG - chr5_2:27496910-27496929 Msa0766090:intron 30.0%
AAAAGTGAAGAGGAATTGAA+TGG - chr5_2:27496940-27496959 Msa0766090:intron 30.0%
! CTGATGAAGATGATTTTGAA+TGG - chr5_2:27496971-27496990 Msa0766090:intron 30.0%
GAATTGAAGAATTCAAGACA+AGG - chr5_2:27497027-27497046 Msa0766090:intron 30.0%
TTCAACTTCTTCTATGATTG+TGG + chr5_2:27497061-27497080 None:intergenic 30.0%
AGAAAAAGAATCACCAAAAG+TGG - chr5_2:27497107-27497126 Msa0766090:intron 30.0%
GCTAGAATTCAATGATCAAA+TGG - chr5_2:27497164-27497183 Msa0766090:intron 30.0%
!! GCTTAGATGCAATTTTAGTA+TGG - chr5_2:27497566-27497585 Msa0766090:CDS 30.0%
!! TAGATGCAATTTTAGTATGG+TGG - chr5_2:27497569-27497588 Msa0766090:CDS 30.0%
!! AGATGCAATTTTAGTATGGT+GGG - chr5_2:27497570-27497589 Msa0766090:CDS 30.0%
!!! AACCACTTTTTGACAACTTT+TGG - chr5_2:27497683-27497702 Msa0766090:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr5_2:27497755-27497774 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr5_2:27497806-27497825 Msa0766090:intron 30.0%
AAAGTAGACCTATGAAGAAT+AGG + chr5_2:27497929-27497948 None:intergenic 30.0%
AGAGATTATTCCATTTGAGA+TGG + chr5_2:27498206-27498225 None:intergenic 30.0%
!!! GTGATCTTTGTTGATTTTCT+TGG + chr5_2:27498241-27498260 None:intergenic 30.0%
! GATTTGGAATTGGTATATGT+TGG - chr5_2:27498301-27498320 Msa0766090:intron 30.0%
AACAATATGACTCACAACAA+AGG - chr5_2:27498383-27498402 Msa0766090:intron 30.0%
TAAAGAATCGTTGTGTGATT+AGG - chr5_2:27498515-27498534 Msa0766090:CDS 30.0%
AATATGTCACCTTTAATAGC+TGG + chr5_2:27498556-27498575 None:intergenic 30.0%
ACCATGTTTCTCAACATTAT+CGG + chr5_2:27498742-27498761 None:intergenic 30.0%
ATAATGTTGAGAAACATGGT+AGG - chr5_2:27498742-27498761 Msa0766090:CDS 30.0%
TAATGTTGAGAAACATGGTA+GGG - chr5_2:27498743-27498762 Msa0766090:CDS 30.0%
CATAAGACGCACTTTATATA+TGG - chr5_2:27498843-27498862 Msa0766090:CDS 30.0%
CCTTAACACATTGAGAATAT+GGG + chr5_2:27498921-27498940 None:intergenic 30.0%
TCCTTAACACATTGAGAATA+TGG + chr5_2:27498922-27498941 None:intergenic 30.0%
TAAGGATTGAGATGAAGATT+TGG - chr5_2:27498936-27498955 Msa0766090:CDS 30.0%
! CTACTGTGTATATCTTTTAG+TGG - chr5_2:27498962-27498981 Msa0766090:CDS 30.0%
! GGTTATAAACACTTTCAAGT+TGG + chr5_2:27499082-27499101 None:intergenic 30.0%
TAAAAAAAGGCTTTACACGT+AGG + chr5_2:27499103-27499122 None:intergenic 30.0%
TTCTTAGATGATAGTAAAGG+AGG - chr5_2:27499244-27499263 Msa0766090:CDS 30.0%
GTTCGAACAGATAAAGAAAA+TGG - chr5_2:27499340-27499359 Msa0766090:CDS 30.0%
ACAGATAAAGAAAATGGGAA+TGG - chr5_2:27499346-27499365 Msa0766090:CDS 30.0%
CAGATAAAGAAAATGGGAAT+GGG - chr5_2:27499347-27499366 Msa0766090:CDS 30.0%
CATTCGAATACAACTACAAA+AGG - chr5_2:27499435-27499454 Msa0766090:intron 30.0%
AATCAATTCAATTCTAACCC+AGG + chr5_2:27499629-27499648 None:intergenic 30.0%
! TGCATGAAACCTGATTTTTA+AGG - chr5_2:27500132-27500151 Msa0766090:CDS 30.0%
! GCATGAAACCTGATTTTTAA+GGG - chr5_2:27500133-27500152 Msa0766090:CDS 30.0%
! TGTTTTCACCCTTAAAAATC+AGG + chr5_2:27500144-27500163 None:intergenic 30.0%
TGAGAAAAGAACAAGTACTA+TGG - chr5_2:27500374-27500393 Msa0766090:five_prime_UTR 30.0%
!! ACCGAATCAAATTTTTAAGC+AGG - chr5_2:27500413-27500432 Msa0766090:five_prime_UTR 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr5_2:27500961-27500980 None:intergenic 30.0%
AATGTATCAACTTCATGGAA+TGG + chr5_2:27501012-27501031 None:intergenic 30.0%
CAAATAGGTAAACTGCCTAA+TGG - chr5_2:27494725-27494744 Msa0766090:three_prime_UTR 35.0%
!!! ACACGTTTTGAGGATTGAAA+TGG + chr5_2:27494775-27494794 None:intergenic 35.0%
! AACCATTCATAGTGGAAAAG+TGG + chr5_2:27495010-27495029 None:intergenic 35.0%
TCATACTCAGATTCTTCTTG+AGG - chr5_2:27495311-27495330 Msa0766090:CDS 35.0%
AATTCACCATCACATTCACT+TGG - chr5_2:27495464-27495483 Msa0766090:CDS 35.0%
!! AACAGAGTTCTCTGTTTTGA+AGG - chr5_2:27495619-27495638 Msa0766090:intron 35.0%
!!! GGAGAGTATTTTATCAAAGG+TGG - chr5_2:27495691-27495710 Msa0766090:intron 35.0%
TGAGTGTGAAATACATGAAG+AGG - chr5_2:27495715-27495734 Msa0766090:intron 35.0%
GAGTGTGAAATACATGAAGA+GGG - chr5_2:27495716-27495735 Msa0766090:intron 35.0%
! GAATTTGTTCAAGAAGATGG+CGG - chr5_2:27495761-27495780 Msa0766090:intron 35.0%
! AAGTGAAAGGTTTGTTTCCA+TGG - chr5_2:27495802-27495821 Msa0766090:intron 35.0%
!! AATGAAGAGCTTTGTTTGCT+TGG - chr5_2:27495853-27495872 Msa0766090:intron 35.0%
!! AGCTTTGTTTGCTTGGAAAA+TGG - chr5_2:27495860-27495879 Msa0766090:intron 35.0%
! AAATAAGAGAGCATGCCATA+GGG - chr5_2:27495930-27495949 Msa0766090:intron 35.0%
ATTAGAGTTATTCTCCCCTA+TGG + chr5_2:27495948-27495967 None:intergenic 35.0%
TCTAATGTTCATGAAGATGG+AGG - chr5_2:27495962-27495981 Msa0766090:intron 35.0%
GAAGATGGAGGAAAATTTGA+AGG - chr5_2:27495974-27495993 Msa0766090:intron 35.0%
!! AACAGAGTACTCTGTTTTCA+TGG - chr5_2:27496003-27496022 Msa0766090:intron 35.0%
GAGATTAAGGTTCAAGATGA+TGG - chr5_2:27496202-27496221 Msa0766090:intron 35.0%
!!! GGGACTCTGTTTTTGTAAAT+AGG - chr5_2:27496314-27496333 Msa0766090:CDS 35.0%
AAACTGAATCGCAATGTTGT+TGG + chr5_2:27496385-27496404 None:intergenic 35.0%
TGAAGAACCAGAAGAAAAAG+AGG - chr5_2:27496498-27496517 Msa0766090:intron 35.0%
! ATAGACTCCTCTTTTTCTTC+TGG + chr5_2:27496508-27496527 None:intergenic 35.0%
! TCAGAATCATCTAGTTCAAG+TGG - chr5_2:27496640-27496659 Msa0766090:intron 35.0%
TTTGCTACCAAGAAACTCAT+AGG + chr5_2:27496707-27496726 None:intergenic 35.0%
! GAGTTTCTTGGTAGCAAAAA+TGG - chr5_2:27496709-27496728 Msa0766090:intron 35.0%
!! AAGTTGATGATGAGAGATGA+AGG - chr5_2:27496745-27496764 Msa0766090:intron 35.0%
AGAAATGGAACCTCATATGA+AGG - chr5_2:27496858-27496877 Msa0766090:intron 35.0%
GAAATGGAACCTCATATGAA+GGG - chr5_2:27496859-27496878 Msa0766090:intron 35.0%
! GTTTTCAAACCCTTCATATG+AGG + chr5_2:27496871-27496890 None:intergenic 35.0%
TTCAAGACCATGTTCTTCAA+AGG + chr5_2:27496893-27496912 None:intergenic 35.0%
AGGAATGAAGAAAAGTGAAG+AGG - chr5_2:27496930-27496949 Msa0766090:intron 35.0%
TTGAAGAATTCAAGACAAGG+AGG - chr5_2:27497030-27497049 Msa0766090:intron 35.0%
AGCTTCACTTCAATCTTCAA+TGG + chr5_2:27497147-27497166 None:intergenic 35.0%
TATCAAACCATGCATGCATT+AGG - chr5_2:27497249-27497268 Msa0766090:CDS 35.0%
AAGATCGAAACATGAAGTCT+TGG - chr5_2:27497378-27497397 Msa0766090:CDS 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG + chr5_2:27497688-27497707 None:intergenic 35.0%
GTAGATTTGTCACTATCTCT+AGG + chr5_2:27497867-27497886 None:intergenic 35.0%
CCTACAAATCAAGAGTAAAG+TGG + chr5_2:27498133-27498152 None:intergenic 35.0%
!! CCACTTTACTCTTGATTTGT+AGG - chr5_2:27498130-27498149 Msa0766090:intron 35.0%
! GATTATTCCATTTGAGATGG+TGG + chr5_2:27498203-27498222 None:intergenic 35.0%
AACATAAGATTTCCCATGAG+AGG + chr5_2:27498336-27498355 None:intergenic 35.0%
TCTCATGGGAAATCTTATGT+TGG - chr5_2:27498335-27498354 Msa0766090:intron 35.0%
ATAGAGAATGAGCCATTTCA+AGG - chr5_2:27498469-27498488 Msa0766090:intron 35.0%
CTTCATGTTCCAGCTATTAA+AGG - chr5_2:27498544-27498563 Msa0766090:CDS 35.0%
!! GTTACGAGTTTGGTGATTTT+TGG + chr5_2:27498713-27498732 None:intergenic 35.0%
ACCGATAATGTTGAGAAACA+TGG - chr5_2:27498738-27498757 Msa0766090:CDS 35.0%
AGCTAAATGACGCGTATATT+AGG - chr5_2:27498888-27498907 Msa0766090:CDS 35.0%
GCTAAATGACGCGTATATTA+GGG - chr5_2:27498889-27498908 Msa0766090:CDS 35.0%
CCCATATTCTCAATGTGTTA+AGG - chr5_2:27498918-27498937 Msa0766090:CDS 35.0%
AAAATCAGCATCTCAACTCA+AGG + chr5_2:27499207-27499226 None:intergenic 35.0%
! AAGAATCAATGCGTGTGTTT+TGG - chr5_2:27499311-27499330 Msa0766090:CDS 35.0%
! AGAATCAATGCGTGTGTTTT+GGG - chr5_2:27499312-27499331 Msa0766090:CDS 35.0%
TGCAATTTCAAACCTTCTAG+TGG - chr5_2:27499411-27499430 Msa0766090:CDS 35.0%
!! ACAAATTGATTTTAGTGGCC+TGG - chr5_2:27499608-27499627 Msa0766090:CDS 35.0%
!! CAAATTGATTTTAGTGGCCT+GGG - chr5_2:27499609-27499628 Msa0766090:CDS 35.0%
TCATGCATGAAAACATGGTT+TGG + chr5_2:27500119-27500138 None:intergenic 35.0%
AGGTTTCATGCATGAAAACA+TGG + chr5_2:27500124-27500143 None:intergenic 35.0%
ACAGAAGGATAAAAAGCTGA+AGG - chr5_2:27500222-27500241 Msa0766090:CDS 35.0%
! TTGGATTGCGATTGATTTCA+AGG - chr5_2:27500332-27500351 Msa0766090:CDS 35.0%
! TGGATTGCGATTGATTTCAA+GGG - chr5_2:27500333-27500352 Msa0766090:CDS 35.0%
ATAACTAGGATGTATGAGCA+AGG + chr5_2:27500606-27500625 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr5_2:27500728-27500747 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr5_2:27500827-27500846 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr5_2:27500831-27500850 None:intergenic 35.0%
!! TCCATGAAGTTGATACATTC+AGG - chr5_2:27501013-27501032 Msa0766090:five_prime_UTR 35.0%
TCCTGAATGTATCAACTTCA+TGG + chr5_2:27501017-27501036 None:intergenic 35.0%
!! GAAGTTGATACATTCAGGAA+TGG - chr5_2:27501018-27501037 Msa0766090:five_prime_UTR 35.0%
! GTTGTGTTTGACACGTTTTG+AGG + chr5_2:27494785-27494804 None:intergenic 40.0%
! AGGAGAAGATTTTGCACACA+TGG + chr5_2:27494910-27494929 None:intergenic 40.0%
!! GTCCACTTTTCCACTATGAA+TGG - chr5_2:27495005-27495024 Msa0766090:intron 40.0%
CTCAGATTCTTCTTGAGGTT+TGG - chr5_2:27495316-27495335 Msa0766090:CDS 40.0%
!! AACAGAGTGCTCTGTTTTCA+AGG - chr5_2:27495577-27495596 Msa0766090:intron 40.0%
AACAGTTGGATGATTCTCCA+TGG + chr5_2:27495822-27495841 None:intergenic 40.0%
! GAAATAAGAGAGCATGCCAT+AGG - chr5_2:27495929-27495948 Msa0766090:intron 40.0%
! AATAAGAGAGCATGCCATAG+GGG - chr5_2:27495931-27495950 Msa0766090:intron 40.0%
!! GGCTCTGATTTTCATGAAGA+TGG - chr5_2:27496073-27496092 Msa0766090:intron 40.0%
GTCTCTGATGTTACTGAAGA+TGG - chr5_2:27496130-27496149 Msa0766090:intron 40.0%
CTAGTTCAAGTGGTCTAATC+TGG - chr5_2:27496650-27496669 Msa0766090:intron 40.0%
! ATGGGAGCATGAAGAAATAG+TGG - chr5_2:27496990-27497009 Msa0766090:intron 40.0%
AGAGCTATGCAGAGAAAATG+AGG - chr5_2:27497208-27497227 Msa0766090:CDS 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr5_2:27497745-27497764 None:intergenic 40.0%
!!! CCATTTGAGATGGTGGATTT+TGG + chr5_2:27498196-27498215 None:intergenic 40.0%
CCAAAATCCACCATCTCAAA+TGG - chr5_2:27498193-27498212 Msa0766090:intron 40.0%
TTGGACAAATTTGCCTCTCA+TGG - chr5_2:27498320-27498339 Msa0766090:intron 40.0%
TGGACAAATTTGCCTCTCAT+GGG - chr5_2:27498321-27498340 Msa0766090:intron 40.0%
ACTCACAACAAAGGTCTCAT+AGG - chr5_2:27498392-27498411 Msa0766090:intron 40.0%
CATAGGTATAACCATGTTGC+TGG - chr5_2:27498409-27498428 Msa0766090:intron 40.0%
TAATAGCTGGAACATGAAGC+AGG + chr5_2:27498543-27498562 None:intergenic 40.0%
! TCGGTGTTTAGTTACGAGTT+TGG + chr5_2:27498723-27498742 None:intergenic 40.0%
AAATGACGCGTATATTAGGG+TGG - chr5_2:27498892-27498911 Msa0766090:CDS 40.0%
GTTAGTCCATTGTTGCTCTT+AGG - chr5_2:27498993-27499012 Msa0766090:CDS 40.0%
AGATGATAGTAAAGGAGGTG+AGG - chr5_2:27499249-27499268 Msa0766090:CDS 40.0%
GTATTCGAATGTCCACTAGA+AGG + chr5_2:27499426-27499445 None:intergenic 40.0%
! TCTAAGGTCACGAGTTTAAG+TGG - chr5_2:27499648-27499667 Msa0766090:CDS 40.0%
TTTAGAGAACTCTTGCAACG+TGG + chr5_2:27499797-27499816 None:intergenic 40.0%
CTTGTGCTACATGTTACAGA+AGG - chr5_2:27500207-27500226 Msa0766090:CDS 40.0%
CTGAAGGACATAGTAAGAAC+TGG - chr5_2:27500238-27500257 Msa0766090:CDS 40.0%
CCAATTGCTCATGATCAAGT+TGG + chr5_2:27500303-27500322 None:intergenic 40.0%
CCAACTTGATCATGAGCAAT+TGG - chr5_2:27500300-27500319 Msa0766090:CDS 40.0%
! ATTGCGATTGATTTCAAGGG+TGG - chr5_2:27500336-27500355 Msa0766090:CDS 40.0%
GCAAAAAAGAAGGTTCCACA+TGG + chr5_2:27500447-27500466 None:intergenic 40.0%
TCTTGTGTGGCATACAAGTT+TGG - chr5_2:27500665-27500684 Msa0766090:five_prime_UTR 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr5_2:27500724-27500743 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr5_2:27500828-27500847 None:intergenic 40.0%
ATACATTCAGGAATGGAGCT+AGG - chr5_2:27501025-27501044 Msa0766090:five_prime_UTR 40.0%
! GGACTCCTTTTTCCAACTTG+TGG + chr5_2:27494989-27495008 None:intergenic 45.0%
CCATCACCAAGTGAATGTGA+TGG + chr5_2:27495473-27495492 None:intergenic 45.0%
! CCATCACATTCACTTGGTGA+TGG - chr5_2:27495470-27495489 Msa0766090:CDS 45.0%
! TGTTCAAGAAGATGGCGGTA+AGG - chr5_2:27495766-27495785 Msa0766090:intron 45.0%
TGGCGGTAAGGAAAATGAAG+AGG - chr5_2:27495778-27495797 Msa0766090:intron 45.0%
TGGGAAACGGTTGAAACATC+AGG + chr5_2:27496427-27496446 None:intergenic 45.0%
CATTCAACCGATGTTCCACA+TGG - chr5_2:27496529-27496548 Msa0766090:intron 45.0%
CTCAAAGCCATGTGGAACAT+CGG + chr5_2:27496539-27496558 None:intergenic 45.0%
CTGGAGCAACAGCAACAAAA+TGG - chr5_2:27496669-27496688 Msa0766090:intron 45.0%
GTTCTCACCTAATGCATGCA+TGG + chr5_2:27497259-27497278 None:intergenic 45.0%
GTTGGGTGCGAGATGAATAA+TGG + chr5_2:27497596-27497615 None:intergenic 45.0%
GTTGAAACTCACCAGCAACA+TGG + chr5_2:27498423-27498442 None:intergenic 45.0%
GAGAATGAGCCATTTCAAGG+TGG - chr5_2:27498472-27498491 Msa0766090:intron 45.0%
ATCCTTGGTCCACCTTGAAA+TGG + chr5_2:27498484-27498503 None:intergenic 45.0%
TGATAGTAAAGGAGGTGAGG+AGG - chr5_2:27499252-27499271 Msa0766090:CDS 45.0%
AGGATCCAATTGCAAGTGGA+AGG - chr5_2:27499272-27499291 Msa0766090:CDS 45.0%
TGCAACCTTCCACTTGCAAT+TGG + chr5_2:27499280-27499299 None:intergenic 45.0%
!! GAAGTTCCAAAAGCACCATG+AGG - chr5_2:27500276-27500295 Msa0766090:CDS 45.0%
!! CATGATCAAGTTGGTCCTCA+TGG + chr5_2:27500294-27500313 None:intergenic 45.0%
GAGCAATTGGTTGCTCAAGT+TGG - chr5_2:27500313-27500332 Msa0766090:CDS 45.0%
AAGCAGGAAGATTGTCCATG+TGG - chr5_2:27500429-27500448 Msa0766090:five_prime_UTR 45.0%
GGTAGTGCAATGTTCTTGTG+TGG - chr5_2:27500652-27500671 Msa0766090:five_prime_UTR 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr5_2:27500725-27500744 None:intergenic 45.0%
!! ATACTAAATTTAAATTTAAT+AGG - chr5_2:27499124-27499143 Msa0766090:CDS 5.0%
! TTTGAGAGCGAGGTGTTTGG+TGG - chr5_2:27496553-27496572 Msa0766090:intron 50.0%
AGCCATTTCAAGGTGGACCA+AGG - chr5_2:27498479-27498498 Msa0766090:intron 50.0%
TGACGCGTATATTAGGGTGG+TGG - chr5_2:27498895-27498914 Msa0766090:CDS 50.0%
GAGGAGGATCCAATTGCAAG+TGG - chr5_2:27499268-27499287 Msa0766090:CDS 50.0%
AGAGAACTCTTGCAACGTGG+TGG + chr5_2:27499794-27499813 None:intergenic 50.0%
! GTTGGTCCTCATGGTGCTTT+TGG + chr5_2:27500285-27500304 None:intergenic 50.0%
GTGTGGCATACAAGTTTGGC+TGG - chr5_2:27500669-27500688 Msa0766090:five_prime_UTR 50.0%
!! TCCACATGGCTTTGAGAGCG+AGG - chr5_2:27496543-27496562 Msa0766090:intron 55.0%
ACCTCGCTCTCAAAGCCATG+TGG + chr5_2:27496547-27496566 None:intergenic 55.0%
!! GGCTTTGAGAGCGAGGTGTT+TGG - chr5_2:27496550-27496569 Msa0766090:intron 55.0%
GGGGAGCCTAAGAGCAACAA+TGG + chr5_2:27499002-27499021 None:intergenic 55.0%
! GCAACGTGGTGGAGTTGCAA+GGG + chr5_2:27499783-27499802 None:intergenic 55.0%
! TGCAACGTGGTGGAGTTGCA+AGG + chr5_2:27499784-27499803 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 27494710 27501054 27494710 ID=Msa0766090;Name=Msa0766090
chr5_2 mRNA 27494710 27501054 27494710 ID=Msa0766090-mRNA-1;Parent=Msa0766090;Name=Msa0766090-mRNA-1;_AED=0.04;_eAED=0.04;_QI=694|1|1|1|0.6|0.33|6|300|877
chr5_2 exon 27494710 27494777 27494710 ID=Msa0766090-mRNA-1:exon:10779;Parent=Msa0766090-mRNA-1
chr5_2 exon 27495052 27495538 27495052 ID=Msa0766090-mRNA-1:exon:10778;Parent=Msa0766090-mRNA-1
chr5_2 exon 27496308 27496513 27496308 ID=Msa0766090-mRNA-1:exon:10777;Parent=Msa0766090-mRNA-1
chr5_2 exon 27497199 27497612 27497199 ID=Msa0766090-mRNA-1:exon:10776;Parent=Msa0766090-mRNA-1
chr5_2 exon 27498494 27499432 27498494 ID=Msa0766090-mRNA-1:exon:10775;Parent=Msa0766090-mRNA-1
chr5_2 exon 27499541 27501054 27499541 ID=Msa0766090-mRNA-1:exon:10774;Parent=Msa0766090-mRNA-1
chr5_2 five_prime_UTR 27500361 27501054 27500361 ID=Msa0766090-mRNA-1:five_prime_utr;Parent=Msa0766090-mRNA-1
chr5_2 CDS 27499541 27500360 27499541 ID=Msa0766090-mRNA-1:cds;Parent=Msa0766090-mRNA-1
chr5_2 CDS 27498494 27499432 27498494 ID=Msa0766090-mRNA-1:cds;Parent=Msa0766090-mRNA-1
chr5_2 CDS 27497199 27497612 27497199 ID=Msa0766090-mRNA-1:cds;Parent=Msa0766090-mRNA-1
chr5_2 CDS 27496308 27496513 27496308 ID=Msa0766090-mRNA-1:cds;Parent=Msa0766090-mRNA-1
chr5_2 CDS 27495284 27495538 27495284 ID=Msa0766090-mRNA-1:cds;Parent=Msa0766090-mRNA-1
chr5_2 three_prime_UTR 27495052 27495283 27495052 ID=Msa0766090-mRNA-1:three_prime_utr;Parent=Msa0766090-mRNA-1
chr5_2 three_prime_UTR 27494710 27494777 27494710 ID=Msa0766090-mRNA-1:three_prime_utr;Parent=Msa0766090-mRNA-1
Gene Sequence

>Msa0766090

ATGTTTTGTTTATTTTGTTTCAGGTTTCTTAAATTAGGAGATGCTAAAAAAGATCTCATTAATTCACCATCACATTCACTTGGTGATGGAAATTTTCATGATTTCAAGGTTGATAGTTTTGCAGAAGAGTTGTCTAATTTCCTTTTTTGGAGTGATGATTTTCATCAAAGAGAAACAGAGTGCTCTGTTTTCAAGGATTCTTTTCATGAAGAAAAAACAGAGTTCTCTGTTTTGAAGGAAATTCACAATGATTTTCATGAAGATAGTGTGAAAACAGAGATATATGTGGAGAGTATTTTATCAAAGGTGGTTGAGTGTGAAATACATGAAGAGGGTATTGATAAAGAAAAAGAAGATGAATTTGTTCAAGAAGATGGCGGTAAGGAAAATGAAGAGGTAAGTGAAAGGTTTGTTTCCATGGAGAATCATCCAACTGTTCATGAAATTGAAATGAAGAGCTTTGTTTGCTTGGAAAATGGTCATGATCTATGTCATGATAATATGAAGATAGAAGAGAAAGAAGAAGAAATAAGAGAGCATGCCATAGGGGAGAATAACTCTAATGTTCATGAAGATGGAGGAAAATTTGAAGGAATTGAAACAGAGTACTCTGTTTTCAATGAGAATGTAAATGAAGATGGTATGAAAAAAGATGAAAAGGAAATAGAAGGCTCTGATTTTCATGAAGATGGAGATGAAACAGAGTACTCTGTTTTCATGGAGAATGTCTCTGATGTTACTGAAGATGGTAACAAAATAGATGAGAAGGATATAGAGGAATCTGTTTTAAAAGATCATGAGATTAAGGTTCAAGATGATGATAGGTATGAATACATCTCAGAAAAAGATATAAGTTGCTTTGTGGAAGAACCAACAACATTGCGATTCAGTTTTCGAGAATATTACACAAGTCCTGATGTTTCAACCGTTTCCCAAAATGCATACAAAGAGTTTTCAAAGCTTGATTCAGAGAAAGACGTTGTAACTGAAGAACCAGAAGAAAAAGAGGAGTCTATTCATTCAACCGATGTTCCACATGGCTTTGAGAGCGAGGTGTTTGGTGGAACTGATTCATCTGATGAAGATTATTTCATTTTCAATGAAAACTCAGTGACATCTGATTCTGAGTCAGAATCATCTAGTTCAAGTGGTCTAATCTGGAGCAACAGCAACAAAATGGATGATTCATTTTCCTATGAGTTTCTTGGTAGCAAAAATGGTAGCGAAATTCTAAAGTTGATGATGAGAGATGAAGGAATAGAAGATTTGGATGAAAACCAATTTTCATTTGATGATAAAGTTTCAAAATTTGAAGTTGATGAGGTTTATTCTGAAAATGAGTATATAGAAATGGAACCTCATATGAAGGGTTTGAAAACCTTTGAAGAACATGGTCTTGAAGTGAAAGATGAAAAAGAAGGAATGAAGAAAAGTGAAGAGGAATTGAATGGATCAGAATCTGATGAAGATGATTTTGAATGGGAGCATGAAGAAATAGTGGAACAATTGAAGCTAGAATTGAAGAATTCAAGACAAGGAGGACTTGCCACAATCATAGAAGAAGTTGAAGATGAAGAAGAAGAACAAGAACAAGAAGAAAAAGAATCACCAAAAGTGGTTGAAGAATTAAAACCATTGAAGATTGAAGTGAAGCTAGAATTCAATGATCAAATGGATCAAATTGAGAAAGTTTATAAGAGCTATGCAGAGAAAATGAGGAAACTTGATATCTTGAATTATCAAACCATGCATGCATTAGGTCTTCTTCAACTAAAAGACCCTCTTAAATTAATTTCAATACCAAAATCCACCATCTCAAATGGAATAATCTCTCAAAATTTGTGGCCAAGAAAATCAACAAAGATCACATCTGACCCATTTTTAAAACTTGTTCATCAACTTTATATAGATTTGGAATTGGTATATGTTGGACAAATTTGCCTCTCATGGGAAATCTTATGTTGGCTACACATGAAAGCTATTGAATTACAACAATATGACTCACAACAAAGGTCTCATAGGTATAACCATGTTGCTGGTGAGTTTCAACTTTTTCAAGTATTGATGCAAAGGTTCATAGAGAATGAGCCATTTCAAGGTGGACCAAGGATTCAGAATTATGTAAAGAATCGTTGTGTGATTAGGAACCTGCTTCATGTTCCAGCTATTAAAGATGATAGTAAAGGAGGTGAGGAGGATCCAATTGCAAGTGGAAGGTTGCAAGATATCATCAAAGAATCAATGCGTGTGTTTTGGGAATTTGTTCGAACAGATAAAGAAAATGGGAATGGGAATGTGATTTCTAAGCAAATTGGAAGTGATCTCAAAGACGCTGCAATTTCAAACCTTCTAGTGGACATTCGAATACAACTACAAAAGAAGGATAAAAAGCTGAAGGACATAGTAAGAACTGGAAATTGTATAGTGAAGAAGTTCCAAAAGCACCATGAGGACCAACTTGATCATGAGCAATTGGTTGCTCAAGTTGGATTGCGATTGATTTCAAGGGTGGTAAACATGTCACAATTGAGAAAAGAACAAGTACTATGGTGTAGTGAAAAGTTGAACCGAATCAAATTTTTAAGCAGGAAGATTGTCCATGTGGAACCTTCTTTTTTGCTTTTTCCATATTGA
Protein sequence

>Msa0766090

MFCLFCFRFLKLGDAKKDLINSPSHSLGDGNFHDFKVDSFAEELSNFLFWSDDFHQRETECSVFKDSFHEEKTEFSVLKEIHNDFHEDSVKTEIYVESILSKVVECEIHEEGIDKEKEDEFVQEDGGKENEEVSERFVSMENHPTVHEIEMKSFVCLENGHDLCHDNMKIEEKEEEIREHAIGENNSNVHEDGGKFEGIETEYSVFNENVNEDGMKKDEKEIEGSDFHEDGDETEYSVFMENVSDVTEDGNKIDEKDIEESVLKDHEIKVQDDDRYEYISEKDISCFVEEPTTLRFSFREYYTSPDVSTVSQNAYKEFSKLDSEKDVVTEEPEEKEESIHSTDVPHGFESEVFGGTDSSDEDYFIFNENSVTSDSESESSSSSGLIWSNSNKMDDSFSYEFLGSKNGSEILKLMMRDEGIEDLDENQFSFDDKVSKFEVDEVYSENEYIEMEPHMKGLKTFEEHGLEVKDEKEGMKKSEEELNGSESDEDDFEWEHEEIVEQLKLELKNSRQGGLATIIEEVEDEEEEQEQEEKESPKVVEELKPLKIEVKLEFNDQMDQIEKVYKSYAEKMRKLDILNYQTMHALGLLQLKDPLKLISIPKSTISNGIISQNLWPRKSTKITSDPFLKLVHQLYIDLELVYVGQICLSWEILCWLHMKAIELQQYDSQQRSHRYNHVAGEFQLFQVLMQRFIENEPFQGGPRIQNYVKNRCVIRNLLHVPAIKDDSKGGEEDPIASGRLQDIIKESMRVFWEFVRTDKENGNGNVISKQIGSDLKDAAISNLLVDIRIQLQKKDKKLKDIVRTGNCIVKKFQKHHEDQLDHEQLVAQVGLRLISRVVNMSQLRKEQVLWCSEKLNRIKFLSRKIVHVEPSFLLFPY*