Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858120 | XP_003616573.1 | 99.107 | 336 | 2 | 1 | 1 | 335 | 1 | 336 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858120 | sp|O04200|PXN_ARATH | 72.783 | 327 | 84 | 2 | 1 | 323 | 1 | 326 | 4.92e-162 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858120 | G7KBX5 | 99.107 | 336 | 2 | 1 | 1 | 335 | 1 | 336 | 0.0 | 676 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030700 | Msa0858120 | 0.805249 | 1.462561e-49 | -8.615850e-47 |
| Msa0044090 | Msa0858120 | 0.805045 | 1.613680e-49 | -8.615850e-47 |
| Msa0089980 | Msa0858120 | 0.807548 | 4.789101e-50 | -8.615850e-47 |
| Msa0090010 | Msa0858120 | 0.807138 | 5.851880e-50 | -8.615850e-47 |
| Msa0106620 | Msa0858120 | 0.811969 | 5.365553e-51 | -8.615850e-47 |
| Msa0614380 | Msa0858120 | 0.837874 | 4.018218e-57 | -8.615850e-47 |
| Msa0673120 | Msa0858120 | 0.801121 | 1.045283e-48 | -8.615850e-47 |
| Msa0733010 | Msa0858120 | 0.816546 | 5.230447e-52 | -8.615850e-47 |
| Msa0738240 | Msa0858120 | 0.967045 | 9.707208e-127 | -8.615850e-47 |
| Msa0752450 | Msa0858120 | 0.808067 | 3.714929e-50 | -8.615850e-47 |
| Msa0752970 | Msa0858120 | 0.802100 | 6.584817e-49 | -8.615850e-47 |
| Msa0773990 | Msa0858120 | 0.806579 | 7.682574e-50 | -8.615850e-47 |
| Msa0124320 | Msa0858120 | 0.808487 | 3.023788e-50 | -8.615850e-47 |
| Msa0183760 | Msa0858120 | 0.825483 | 4.573547e-54 | -8.615850e-47 |
| Msa0225220 | Msa0858120 | 0.807613 | 4.641070e-50 | -8.615850e-47 |
| Msa0237210 | Msa0858120 | 0.816533 | 5.264532e-52 | -8.615850e-47 |
| Msa0274980 | Msa0858120 | 0.813945 | 1.979264e-51 | -8.615850e-47 |
| Msa0315690 | Msa0858120 | 0.820948 | 5.237328e-53 | -8.615850e-47 |
| Msa0567380 | Msa0858120 | 0.818574 | 1.825829e-52 | -8.615850e-47 |
| Msa0572750 | Msa0858120 | 0.814552 | 1.453494e-51 | -8.615850e-47 |
| Msa0594050 | Msa0858120 | 0.803264 | 3.788054e-49 | -8.615850e-47 |
| Msa0855870 | Msa0858120 | 0.806710 | 7.208622e-50 | -8.615850e-47 |
| Msa0858120 | Msa0933760 | 0.805549 | 1.265017e-49 | -8.615850e-47 |
| Msa0858120 | Msa1034500 | 0.821115 | 4.792213e-53 | -8.615850e-47 |
| Msa0858120 | Msa1188180 | 0.800775 | 1.230255e-48 | -8.615850e-47 |
| Msa0858120 | Msa1283740 | 0.802460 | 5.551237e-49 | -8.615850e-47 |
| Msa0858120 | Msa1322630 | 0.803317 | 3.693712e-49 | -8.615850e-47 |
| Msa0858120 | Msa1340200 | 0.814655 | 1.379666e-51 | -8.615850e-47 |
| Msa0858120 | Msa1403710 | 0.804368 | 2.233626e-49 | -8.615850e-47 |
| Msa0858120 | Msa1464090 | 0.809840 | 1.551148e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858120 | MtrunA17_Chr5g0436571 | 99.107 | 336 | 2 | 1 | 1 | 335 | 1 | 336 | 0.0 | 676 |
| Msa0858120 | MtrunA17_Chr1g0163521 | 56.193 | 331 | 110 | 5 | 21 | 316 | 23 | 353 | 4.68e-124 | 360 |
| Msa0858120 | MtrunA17_Chr8g0372531 | 28.803 | 309 | 171 | 10 | 23 | 316 | 29 | 303 | 7.38e-34 | 126 |
| Msa0858120 | MtrunA17_Chr7g0269701 | 29.560 | 318 | 182 | 9 | 5 | 314 | 19 | 302 | 2.71e-32 | 122 |
| Msa0858120 | MtrunA17_Chr1g0205941 | 26.048 | 334 | 197 | 5 | 3 | 322 | 6 | 303 | 2.25e-30 | 117 |
| Msa0858120 | MtrunA17_Chr1g0195101 | 27.759 | 299 | 174 | 9 | 24 | 314 | 35 | 299 | 2.28e-26 | 106 |
| Msa0858120 | MtrunA17_Chr5g0423111 | 26.667 | 315 | 195 | 6 | 24 | 333 | 37 | 320 | 8.86e-25 | 102 |
| Msa0858120 | MtrunA17_Chr5g0416661 | 27.381 | 336 | 188 | 6 | 3 | 322 | 6 | 301 | 2.77e-23 | 98.2 |
| Msa0858120 | MtrunA17_Chr3g0135861 | 27.723 | 303 | 197 | 8 | 9 | 308 | 36 | 319 | 7.37e-23 | 97.4 |
| Msa0858120 | MtrunA17_Chr3g0131501 | 26.038 | 265 | 159 | 8 | 54 | 314 | 245 | 476 | 4.60e-18 | 84.7 |
| Msa0858120 | MtrunA17_Chr2g0296061 | 23.143 | 350 | 206 | 8 | 4 | 322 | 11 | 328 | 7.18e-18 | 83.2 |
| Msa0858120 | MtrunA17_Chr8g0385571 | 26.692 | 266 | 158 | 9 | 53 | 314 | 266 | 498 | 1.41e-17 | 83.6 |
| Msa0858120 | MtrunA17_Chr4g0004571 | 26.299 | 308 | 185 | 10 | 9 | 312 | 17 | 286 | 1.81e-17 | 81.6 |
| Msa0858120 | MtrunA17_Chr7g0252401 | 26.616 | 263 | 153 | 8 | 56 | 314 | 249 | 475 | 4.86e-17 | 81.6 |
| Msa0858120 | MtrunA17_Chr8g0366791 | 26.300 | 327 | 205 | 9 | 1 | 322 | 2 | 297 | 6.95e-17 | 79.7 |
| Msa0858120 | MtrunA17_Chr3g0137941 | 21.895 | 306 | 196 | 6 | 9 | 312 | 123 | 387 | 1.74e-16 | 79.7 |
| Msa0858120 | MtrunA17_Chr4g0000261 | 25.079 | 315 | 191 | 15 | 9 | 312 | 67 | 347 | 6.90e-16 | 77.8 |
| Msa0858120 | MtrunA17_Chr1g0196921 | 23.675 | 283 | 181 | 8 | 15 | 293 | 21 | 272 | 7.14e-16 | 77.0 |
| Msa0858120 | MtrunA17_Chr4g0067231 | 22.284 | 359 | 204 | 9 | 1 | 321 | 7 | 328 | 7.66e-16 | 77.4 |
| Msa0858120 | MtrunA17_Chr1g0149111 | 20.588 | 306 | 200 | 6 | 9 | 312 | 140 | 404 | 3.74e-15 | 75.9 |
| Msa0858120 | MtrunA17_Chr6g0488081 | 23.397 | 312 | 214 | 7 | 9 | 319 | 20 | 307 | 2.11e-14 | 72.8 |
| Msa0858120 | MtrunA17_Chr5g0411411 | 25.532 | 329 | 205 | 11 | 1 | 322 | 2 | 297 | 7.78e-14 | 70.9 |
| Msa0858120 | MtrunA17_Chr7g0240341 | 24.910 | 277 | 168 | 8 | 53 | 324 | 75 | 316 | 1.54e-13 | 70.5 |
| Msa0858120 | MtrunA17_Chr8g0383321 | 24.768 | 323 | 176 | 9 | 9 | 328 | 53 | 311 | 2.49e-13 | 69.7 |
| Msa0858120 | MtrunA17_Chr7g0231821 | 26.740 | 273 | 147 | 5 | 3 | 262 | 6 | 238 | 6.19e-13 | 67.8 |
| Msa0858120 | MtrunA17_Chr5g0396801 | 25.000 | 332 | 201 | 11 | 9 | 319 | 39 | 343 | 6.81e-13 | 68.6 |
| Msa0858120 | MtrunA17_Chr1g0201361 | 23.476 | 328 | 186 | 11 | 4 | 328 | 46 | 311 | 4.22e-12 | 66.2 |
| Msa0858120 | MtrunA17_Chr2g0331771 | 22.581 | 310 | 187 | 11 | 9 | 308 | 157 | 423 | 7.80e-12 | 65.9 |
| Msa0858120 | MtrunA17_Chr8g0347451 | 25.075 | 335 | 199 | 12 | 9 | 319 | 52 | 358 | 2.21e-11 | 64.3 |
| Msa0858120 | MtrunA17_Chr4g0028531 | 24.290 | 317 | 197 | 11 | 6 | 315 | 20 | 300 | 3.32e-11 | 63.5 |
| Msa0858120 | MtrunA17_Chr3g0135801 | 21.474 | 312 | 207 | 8 | 9 | 312 | 35 | 316 | 4.24e-11 | 63.2 |
| Msa0858120 | MtrunA17_Chr7g0242311 | 29.139 | 151 | 89 | 4 | 184 | 333 | 139 | 272 | 5.54e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858120 | AT2G39970.1 | 72.783 | 327 | 84 | 2 | 1 | 323 | 1 | 326 | 5.01e-163 | 458 |
| Msa0858120 | AT5G66380.1 | 30.952 | 336 | 181 | 10 | 7 | 329 | 9 | 306 | 4.99e-38 | 138 |
| Msa0858120 | AT2G47490.1 | 27.987 | 318 | 180 | 9 | 24 | 332 | 33 | 310 | 2.84e-32 | 122 |
| Msa0858120 | AT1G25380.1 | 27.215 | 316 | 188 | 8 | 24 | 332 | 37 | 317 | 1.89e-29 | 116 |
| Msa0858120 | AT1G25380.2 | 27.215 | 316 | 188 | 8 | 24 | 332 | 37 | 317 | 1.89e-29 | 116 |
| Msa0858120 | AT3G05290.1 | 26.404 | 356 | 196 | 9 | 3 | 332 | 6 | 321 | 4.17e-27 | 108 |
| Msa0858120 | AT5G27520.1 | 27.746 | 346 | 176 | 12 | 3 | 322 | 8 | 305 | 3.06e-26 | 106 |
| Msa0858120 | AT4G26180.1 | 25.000 | 304 | 202 | 6 | 9 | 310 | 22 | 301 | 2.28e-18 | 85.1 |
| Msa0858120 | AT5G46800.2 | 26.586 | 331 | 202 | 10 | 1 | 322 | 1 | 299 | 2.41e-17 | 81.6 |
| Msa0858120 | AT5G46800.3 | 26.586 | 331 | 202 | 10 | 1 | 322 | 1 | 299 | 2.41e-17 | 81.6 |
| Msa0858120 | AT5G46800.1 | 26.586 | 331 | 202 | 10 | 1 | 322 | 1 | 299 | 2.41e-17 | 81.6 |
| Msa0858120 | AT1G14560.1 | 24.333 | 300 | 202 | 8 | 24 | 319 | 43 | 321 | 2.84e-17 | 81.6 |
| Msa0858120 | AT4G26180.2 | 25.087 | 287 | 189 | 6 | 9 | 293 | 22 | 284 | 7.69e-17 | 80.1 |
| Msa0858120 | AT5G48970.1 | 23.235 | 340 | 201 | 9 | 4 | 312 | 18 | 328 | 6.03e-16 | 78.2 |
| Msa0858120 | AT4G32400.1 | 27.805 | 205 | 113 | 5 | 9 | 212 | 209 | 379 | 8.33e-15 | 75.1 |
| Msa0858120 | AT1G14560.2 | 24.138 | 261 | 176 | 7 | 43 | 299 | 59 | 301 | 8.58e-15 | 74.3 |
| Msa0858120 | AT3G21390.1 | 22.515 | 342 | 206 | 9 | 1 | 312 | 12 | 324 | 9.46e-15 | 74.7 |
| Msa0858120 | AT3G20240.1 | 22.642 | 318 | 195 | 12 | 9 | 312 | 53 | 333 | 1.00e-14 | 74.7 |
| Msa0858120 | AT3G21390.2 | 22.714 | 339 | 203 | 9 | 4 | 312 | 37 | 346 | 1.28e-14 | 74.3 |
| Msa0858120 | AT1G14560.3 | 25.417 | 240 | 155 | 7 | 85 | 319 | 3 | 223 | 5.42e-14 | 70.9 |
| Msa0858120 | AT5G51050.1 | 26.518 | 313 | 178 | 13 | 9 | 314 | 224 | 491 | 6.47e-13 | 69.7 |
| Msa0858120 | AT4G39460.2 | 23.148 | 324 | 186 | 7 | 9 | 331 | 59 | 320 | 7.67e-13 | 68.9 |
| Msa0858120 | AT4G39460.1 | 23.148 | 324 | 186 | 7 | 9 | 331 | 59 | 320 | 7.67e-13 | 68.9 |
| Msa0858120 | AT4G39460.3 | 23.148 | 324 | 186 | 7 | 9 | 331 | 59 | 320 | 7.67e-13 | 68.9 |
| Msa0858120 | AT1G14140.1 | 22.535 | 284 | 182 | 9 | 16 | 293 | 24 | 275 | 1.15e-12 | 68.2 |
| Msa0858120 | AT5G61810.2 | 22.186 | 311 | 189 | 9 | 9 | 314 | 66 | 328 | 4.91e-12 | 66.6 |
| Msa0858120 | AT4G01100.1 | 24.779 | 339 | 185 | 14 | 9 | 314 | 43 | 344 | 6.27e-12 | 66.2 |
| Msa0858120 | AT5G61810.1 | 22.186 | 311 | 189 | 9 | 9 | 314 | 209 | 471 | 7.15e-12 | 66.6 |
| Msa0858120 | AT4G01100.3 | 24.490 | 294 | 176 | 9 | 43 | 314 | 25 | 294 | 1.45e-11 | 64.7 |
| Msa0858120 | AT5G58970.1 | 24.290 | 317 | 190 | 12 | 9 | 314 | 17 | 294 | 2.43e-11 | 64.3 |
| Msa0858120 | AT3G55640.1 | 22.699 | 326 | 199 | 10 | 2 | 314 | 36 | 321 | 2.52e-11 | 64.3 |
| Msa0858120 | AT3G55640.4 | 22.699 | 326 | 199 | 10 | 2 | 314 | 36 | 321 | 2.52e-11 | 64.3 |
| Msa0858120 | AT2G37890.1 | 23.053 | 321 | 212 | 8 | 7 | 321 | 44 | 335 | 3.61e-11 | 63.9 |
| Msa0858120 | AT1G79900.1 | 22.449 | 294 | 177 | 8 | 23 | 312 | 31 | 277 | 5.72e-11 | 63.2 |
| Msa0858120 | AT4G01100.2 | 23.235 | 340 | 203 | 11 | 9 | 314 | 43 | 358 | 6.35e-11 | 63.2 |
Find 87 sgRNAs with CRISPR-Local
Find 370 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAACACTTTGTACAATTT+TGG | 0.182689 | 5_4:+55166865 | None:intergenic |
| AGTCAAAGGTTGTGTGAATT+TGG | 0.233448 | 5_4:-55166757 | Msa0858120:exon |
| ATTATTTCTATCAAATATTC+AGG | 0.250418 | 5_4:-55169462 | Msa0858120:CDS |
| ATCCGCTATGAAGGGTTTAA+TGG | 0.255735 | 5_4:-55166908 | Msa0858120:CDS |
| CTTATTGTTGCTGCTTTATC+CGG | 0.280236 | 5_4:-55169364 | Msa0858120:CDS |
| TTATGACGAGGCTGGAGTTT+TGG | 0.300723 | 5_4:-55168091 | Msa0858120:CDS |
| ACTGTTGAGCCCCTTGCTTA+TGG | 0.318517 | 5_4:-55169012 | Msa0858120:CDS |
| AGATTTGTTACTTGATGAAT+AGG | 0.321077 | 5_4:-55166636 | Msa0858120:three_prime_UTR |
| GACAAGAGACACAATTATAA+AGG | 0.344865 | 5_4:-55167435 | Msa0858120:intron |
| AGCATATTCAATTTAATCAT+AGG | 0.348803 | 5_4:-55166679 | Msa0858120:three_prime_UTR |
| ACCTTTGACTTTAAAGTGTT+GGG | 0.364126 | 5_4:+55166770 | None:intergenic |
| GAGGGATGGGAGAGGTTGTA+TGG | 0.373207 | 5_4:-55171925 | Msa0858120:CDS |
| GCATCTGACAACCTCGGATC+AGG | 0.389004 | 5_4:+55169057 | None:intergenic |
| TGCTGTTGACAAATCCGATA+TGG | 0.396037 | 5_4:-55169246 | Msa0858120:CDS |
| ATGTCGGACGCTTTGATCAA+TGG | 0.399669 | 5_4:-55172833 | Msa0858120:CDS |
| AACCTTTGACTTTAAAGTGT+TGG | 0.408530 | 5_4:+55166769 | None:intergenic |
| TGTAACTAGATATTTCTTCT+CGG | 0.409927 | 5_4:-55167755 | Msa0858120:intron |
| CTCGGAGCTGTCGCTAAGCT+TGG | 0.413175 | 5_4:-55167737 | Msa0858120:CDS |
| AGATTCTTATTGCCCTTCTT+CGG | 0.413495 | 5_4:+55172623 | None:intergenic |
| GAATTTGTCGGTTTAAGAAA+AGG | 0.419547 | 5_4:+55172962 | None:intergenic |
| TACAGCATGAACTGTATAGA+AGG | 0.422667 | 5_4:+55167954 | None:intergenic |
| TAGTAGCGTAACTGCTTTAG+AGG | 0.422674 | 5_4:-55167895 | Msa0858120:intron |
| AAGAAGGGCAATAAGAATCT+TGG | 0.440862 | 5_4:-55172620 | Msa0858120:CDS |
| ATCAATGGATTGGCTGGAGC+TGG | 0.443957 | 5_4:-55172818 | Msa0858120:CDS |
| TAGGAAATAGACTGTGTCAT+TGG | 0.453469 | 5_4:-55166660 | Msa0858120:three_prime_UTR |
| AGAAAGTGATGTTTGTTCAA+TGG | 0.455914 | 5_4:+55169035 | None:intergenic |
| AATTTGTCGGTTTAAGAAAA+GGG | 0.456003 | 5_4:+55172963 | None:intergenic |
| GGATTGGCTGGAGCTGGTGG+AGG | 0.464570 | 5_4:-55172812 | Msa0858120:CDS |
| ATTTAAGACATGCTTCCAAA+TGG | 0.468121 | 5_4:-55166575 | Msa0858120:three_prime_UTR |
| GCTTTGATCAATGGATTGGC+TGG | 0.469248 | 5_4:-55172824 | Msa0858120:CDS |
| ATTAAGATGATCCGCTATGA+AGG | 0.474624 | 5_4:-55166917 | Msa0858120:CDS |
| GGCTTGGCGCCATCACTTGT+CGG | 0.475838 | 5_4:-55171901 | Msa0858120:CDS |
| CGAGTAACAACTAGCCATAT+CGG | 0.481205 | 5_4:+55169232 | None:intergenic |
| TCCCAACACTTTAAAGTCAA+AGG | 0.492946 | 5_4:-55166771 | Msa0858120:CDS |
| GAAAATCATACGGTTTGAAG+AGG | 0.498095 | 5_4:+55172764 | None:intergenic |
| GGACGCTTTGATCAATGGAT+TGG | 0.498413 | 5_4:-55172828 | Msa0858120:CDS |
| TTGAATATGCTAAATGAAGA+TGG | 0.498603 | 5_4:+55166691 | None:intergenic |
| AACTGATCGTGATCCGAAGA+AGG | 0.505218 | 5_4:-55172636 | Msa0858120:CDS |
| GGCAGTGGTGATGGATCAGT+TGG | 0.507558 | 5_4:-55169400 | Msa0858120:CDS |
| CTATCCTCTTCTTGTTGTGA+AGG | 0.508862 | 5_4:-55167699 | Msa0858120:intron |
| ATGAATAGGAGATTAAAATA+CGG | 0.509336 | 5_4:-55166622 | Msa0858120:three_prime_UTR |
| GGAGAGGTTGTATGGAGGCT+TGG | 0.511587 | 5_4:-55171917 | Msa0858120:CDS |
| GAAAATGGGAGTGAATTTGT+CGG | 0.514214 | 5_4:+55172950 | None:intergenic |
| CAAGAAGTTTATGACGAGGC+TGG | 0.515817 | 5_4:-55168099 | Msa0858120:CDS |
| AATGGATTGGCTGGAGCTGG+TGG | 0.518922 | 5_4:-55172815 | Msa0858120:CDS |
| GGTTGTGAAACAAGAGGGAT+GGG | 0.523770 | 5_4:-55171938 | Msa0858120:CDS |
| TGTCGGTACAGCTACATCTC+AGG | 0.524615 | 5_4:-55171884 | Msa0858120:intron |
| TTATTGTTGCTGCTTTATCC+GGG | 0.526799 | 5_4:-55169363 | Msa0858120:intron |
| TTTGAAGTAGTTGTTGTACA+TGG | 0.529730 | 5_4:+55173007 | None:intergenic |
| GGGAACATTCTTTGCAAGCA+AGG | 0.534911 | 5_4:+55166790 | None:intergenic |
| CATGCTGTATGAAACCTTGT+TGG | 0.535971 | 5_4:-55167940 | Msa0858120:CDS |
| AGGTTGTGAAACAAGAGGGA+TGG | 0.541422 | 5_4:-55171939 | Msa0858120:CDS |
| CATGGCTAGTTCCATAAGCA+AGG | 0.545272 | 5_4:+55169001 | None:intergenic |
| GCTAGTTGTTACTCGTATGC+AGG | 0.548103 | 5_4:-55169224 | Msa0858120:intron |
| ATGAGACTAGGCAGTGGTGA+TGG | 0.550388 | 5_4:-55169409 | Msa0858120:CDS |
| CAACGTACCATGACCAATGT+TGG | 0.557142 | 5_4:+55168048 | None:intergenic |
| TTCTTCAAATTCAGGTACAC+AGG | 0.560566 | 5_4:-55166948 | Msa0858120:intron |
| GGATGGGAGAGGTTGTATGG+AGG | 0.563808 | 5_4:-55171922 | Msa0858120:CDS |
| TGAAACAAGAGGGATGGGAG+AGG | 0.572625 | 5_4:-55171933 | Msa0858120:CDS |
| GATTGGCTGGAGCTGGTGGA+GGG | 0.575191 | 5_4:-55172811 | Msa0858120:CDS |
| CTTCACAACAAGAAGAGGAT+AGG | 0.584063 | 5_4:+55167700 | None:intergenic |
| TTAAGATGATCCGCTATGAA+GGG | 0.584087 | 5_4:-55166916 | Msa0858120:CDS |
| GTTCGTGAGTAATGAATCTG+AGG | 0.584535 | 5_4:+55166713 | None:intergenic |
| TATACCTTCACAACAAGAAG+AGG | 0.596824 | 5_4:+55167695 | None:intergenic |
| ATGGCTAGTTCCATAAGCAA+GGG | 0.597655 | 5_4:+55169002 | None:intergenic |
| CATCTGACAACCTCGGATCA+GGG | 0.605620 | 5_4:+55169058 | None:intergenic |
| ACTGATCGTGATCCGAAGAA+GGG | 0.613764 | 5_4:-55172635 | Msa0858120:CDS |
| TGTATTACCAACATTGGTCA+TGG | 0.615271 | 5_4:-55168055 | Msa0858120:intron |
| AAAATCATACGGTTTGAAGA+GGG | 0.617729 | 5_4:+55172765 | None:intergenic |
| GAAGGGTGTATTACCAACAT+TGG | 0.627201 | 5_4:-55168061 | Msa0858120:CDS |
| GCACTAGAGAATATGAGACT+AGG | 0.631351 | 5_4:-55169421 | Msa0858120:CDS |
| GAGAATATGAGACTAGGCAG+TGG | 0.634588 | 5_4:-55169415 | Msa0858120:CDS |
| CAAGCTAGACAAGTTAACAA+TGG | 0.636088 | 5_4:-55167459 | Msa0858120:CDS |
| GGAAAACTCTCCCTGATCCG+AGG | 0.640972 | 5_4:-55169068 | Msa0858120:CDS |
| TCTCATATTCTCTAGTGCAG+CGG | 0.647711 | 5_4:+55169426 | None:intergenic |
| TAAAGCAGCAACAATAAGTG+AGG | 0.655236 | 5_4:+55169369 | None:intergenic |
| GTAGCTGTACCGACAAGTGA+TGG | 0.655326 | 5_4:+55171892 | None:intergenic |
| TGGCTAGTTCCATAAGCAAG+GGG | 0.670675 | 5_4:+55169003 | None:intergenic |
| ATTGTAGGTTGTGAAACAAG+AGG | 0.675879 | 5_4:-55171944 | Msa0858120:intron |
| AAAACATCCTCAAAACATGT+CGG | 0.676069 | 5_4:-55172849 | Msa0858120:exon |
| ATCCATTAAACCCTTCATAG+CGG | 0.697028 | 5_4:+55166906 | None:intergenic |
| TTGTAGGTTGTGAAACAAGA+GGG | 0.697405 | 5_4:-55171943 | Msa0858120:intron |
| TTCGTGAGTAATGAATCTGA+GGG | 0.703508 | 5_4:+55166714 | None:intergenic |
| TGCTTATGGAACTAGCCATG+TGG | 0.711885 | 5_4:-55168998 | Msa0858120:intron |
| GATTCAAGAAGTTTATGACG+AGG | 0.713067 | 5_4:-55168103 | Msa0858120:CDS |
| AGACGCATAGAAAAGAGTCG+AGG | 0.730418 | 5_4:-55169089 | Msa0858120:CDS |
| TCAATGGCATCTGACAACCT+CGG | 0.745050 | 5_4:+55169051 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAATCAATTTG+AGG | + | chr5_4:55166600-55166619 | None:intergenic | 10.0% |
| !!! | TTCTTTTATTTTTGTTATAT+TGG | - | chr5_4:55167484-55167503 | Msa0858120:intron | 10.0% |
| !!! | TCTTTTATTTTTGTTATATT+GGG | - | chr5_4:55167485-55167504 | Msa0858120:intron | 10.0% |
| !! | TATATATAAAGAAATTGAAT+AGG | + | chr5_4:55169955-55169974 | None:intergenic | 10.0% |
| !! | ATTTATTTATCAATTAGAAT+AGG | - | chr5_4:55170978-55170997 | Msa0858120:intron | 10.0% |
| !! | ATTGAAATCAATCAATATAT+AGG | - | chr5_4:55167848-55167867 | Msa0858120:intron | 15.0% |
| !! | TTAAAGTTCAATAAATTCAT+TGG | - | chr5_4:55168578-55168597 | Msa0858120:intron | 15.0% |
| !! | TAAAGTTCAATAAATTCATT+GGG | - | chr5_4:55168579-55168598 | Msa0858120:intron | 15.0% |
| !! | AAATTGCAGAAATTAAAAAA+GGG | + | chr5_4:55169984-55170003 | None:intergenic | 15.0% |
| !! | AAAATTGCAGAAATTAAAAA+AGG | + | chr5_4:55169985-55170004 | None:intergenic | 15.0% |
| !!! | ATTATTTCTATCAAATATTC+AGG | - | chr5_4:55170024-55170043 | Msa0858120:intron | 15.0% |
| !! | TTTATATCATATTCTAATAG+AGG | + | chr5_4:55170311-55170330 | None:intergenic | 15.0% |
| !!! | TTTTTAAAGCAAAGATTATA+CGG | + | chr5_4:55171067-55171086 | None:intergenic | 15.0% |
| !! | ATTTATATATCAATCAGTTT+AGG | - | chr5_4:55171185-55171204 | Msa0858120:intron | 15.0% |
| !! | TCATTATTCTTAAAAACATA+AGG | - | chr5_4:55171910-55171929 | Msa0858120:CDS | 15.0% |
| !! | TGGAAAAAAAAATCAATTCT+AGG | + | chr5_4:55167243-55167262 | None:intergenic | 20.0% |
| !! | AGTTGAACAATAAATTTAAG+TGG | + | chr5_4:55167263-55167282 | None:intergenic | 20.0% |
| !! | ACTAACATTGTTCAATTTAA+GGG | + | chr5_4:55167752-55167771 | None:intergenic | 20.0% |
| !!! | TTAAATAGATATTTTGACAG+AGG | - | chr5_4:55167898-55167917 | Msa0858120:CDS | 20.0% |
| !!! | TAAATAGATATTTTGACAGA+GGG | - | chr5_4:55167899-55167918 | Msa0858120:CDS | 20.0% |
| !!! | AACTCATTTTAAAAATGTAG+GGG | + | chr5_4:55168006-55168025 | None:intergenic | 20.0% |
| !!! | CAACTCATTTTAAAAATGTA+GGG | + | chr5_4:55168007-55168026 | None:intergenic | 20.0% |
| !!! | TCAACTCATTTTAAAAATGT+AGG | + | chr5_4:55168008-55168027 | None:intergenic | 20.0% |
| !! | AATAACCTTCTACAATAATA+CGG | + | chr5_4:55168484-55168503 | None:intergenic | 20.0% |
| !! | AAAGTTCAATAAATTCATTG+GGG | - | chr5_4:55168580-55168599 | Msa0858120:intron | 20.0% |
| !!! | ATTGGAAAATCTTAATTTGA+AGG | - | chr5_4:55168603-55168622 | Msa0858120:intron | 20.0% |
| !!! | ACTAATATTTTTTGTTTTGG+TGG | + | chr5_4:55169283-55169302 | None:intergenic | 20.0% |
| !!! | CACACTAATATTTTTTGTTT+TGG | + | chr5_4:55169286-55169305 | None:intergenic | 20.0% |
| !! | ATCAATCTTGCTAAAAAAAT+GGG | - | chr5_4:55169573-55169592 | Msa0858120:intron | 20.0% |
| !! | TAATCTATGATAACTCAATA+GGG | + | chr5_4:55169808-55169827 | None:intergenic | 20.0% |
| !! | ATAATCTATGATAACTCAAT+AGG | + | chr5_4:55169809-55169828 | None:intergenic | 20.0% |
| !!! | ATTGAATTTGTTAATGATGT+TGG | - | chr5_4:55169836-55169855 | Msa0858120:intron | 20.0% |
| !! | AATTGCAGAAATTAAAAAAG+GGG | + | chr5_4:55169983-55170002 | None:intergenic | 20.0% |
| !!! | CTTTTATAATAAGATTACAG+AGG | + | chr5_4:55170540-55170559 | None:intergenic | 20.0% |
| !! | TAAAAGAACTATTACAAGTA+TGG | - | chr5_4:55170554-55170573 | Msa0858120:intron | 20.0% |
| !!! | CTTATCATATACTGAATTTT+CGG | - | chr5_4:55171265-55171284 | Msa0858120:intron | 20.0% |
| !!! | TGTGATTTTAGTTTTACATA+CGG | + | chr5_4:55171635-55171654 | None:intergenic | 20.0% |
| !! | TTCTTATTATACCATGAATA+TGG | - | chr5_4:55172093-55172112 | Msa0858120:intron | 20.0% |
| !! | TTATTAAGGAGAAAAAAACA+TGG | + | chr5_4:55172244-55172263 | None:intergenic | 20.0% |
| !! | TTTCTCCTTAATAATTTGAA+CGG | - | chr5_4:55172250-55172269 | Msa0858120:intron | 20.0% |
| !! | AGCATATTCAATTTAATCAT+AGG | - | chr5_4:55172807-55172826 | Msa0858120:CDS | 20.0% |
| !! | ATGAATAGGAGATTAAAATA+CGG | - | chr5_4:55172864-55172883 | Msa0858120:five_prime_UTR | 20.0% |
| !!! | AATTTGTCGGTTTAAGAAAA+GGG | + | chr5_4:55166526-55166545 | None:intergenic | 25.0% |
| ! | ATAGTATCAAGAGAGAAAAT+GGG | + | chr5_4:55166553-55166572 | None:intergenic | 25.0% |
| !!! | ACTTTGAAACGAAAATCATA+CGG | + | chr5_4:55166735-55166754 | None:intergenic | 25.0% |
| !! | AGTTTCAATCTTTTCTCAAT+TGG | - | chr5_4:55166752-55166771 | Msa0858120:exon | 25.0% |
| !! | GTTTCAATCTTTTCTCAATT+GGG | - | chr5_4:55166753-55166772 | Msa0858120:exon | 25.0% |
| !! | TCAAAATCAAATTTTCCTCA+CGG | + | chr5_4:55166964-55166983 | None:intergenic | 25.0% |
| !!! | TTGATTTTGAGTCAATTGTT+TGG | - | chr5_4:55166974-55166993 | Msa0858120:intron | 25.0% |
| ! | TTAAGTAGAATCAATTCTAG+AGG | - | chr5_4:55167101-55167120 | Msa0858120:intron | 25.0% |
| !!! | TGTATTTTTTGTTCCACTTT+TGG | - | chr5_4:55167131-55167150 | Msa0858120:intron | 25.0% |
| ! | AAGGTAAAATGATCTATGTT+TGG | + | chr5_4:55167305-55167324 | None:intergenic | 25.0% |
| !! | TGCACATATAGAATCAATTT+TGG | - | chr5_4:55167376-55167395 | Msa0858120:intron | 25.0% |
| ! | ACAAAACATACACAGAAAAA+CGG | - | chr5_4:55167416-55167435 | Msa0858120:intron | 25.0% |
| !!! | GAAACTTGATAATGGTTTTT+TGG | - | chr5_4:55167438-55167457 | Msa0858120:CDS | 25.0% |
| ! | GACTAACATTGTTCAATTTA+AGG | + | chr5_4:55167753-55167772 | None:intergenic | 25.0% |
| !! | AATTTAGCACCACATTTTAA+AGG | - | chr5_4:55167791-55167810 | Msa0858120:intron | 25.0% |
| !!! | AGCATAAAACCTTTAAAATG+TGG | + | chr5_4:55167803-55167822 | None:intergenic | 25.0% |
| ! | ACTAGTAGTTCTTCAAATTA+AGG | + | chr5_4:55167943-55167962 | None:intergenic | 25.0% |
| !!! | TTTGCTATTTCGTAAATTTG+AGG | - | chr5_4:55167965-55167984 | Msa0858120:CDS | 25.0% |
| !!! | TTGCTATTTCGTAAATTTGA+GGG | - | chr5_4:55167966-55167985 | Msa0858120:CDS | 25.0% |
| ! | TAAGATTACGAAGTTAAGAA+GGG | + | chr5_4:55168090-55168109 | None:intergenic | 25.0% |
| !! | AGCAAGATTAATAATGGAAA+GGG | - | chr5_4:55168252-55168271 | Msa0858120:intron | 25.0% |
| ! | ATAACCTTCTACAATAATAC+GGG | + | chr5_4:55168483-55168502 | None:intergenic | 25.0% |
| ! | TTATTGTAGAAGGTTATTTG+AGG | - | chr5_4:55168486-55168505 | Msa0858120:intron | 25.0% |
| ! | TATTGTAGAAGGTTATTTGA+GGG | - | chr5_4:55168487-55168506 | Msa0858120:intron | 25.0% |
| !! | TTCAGATAGCTATTATGTTT+TGG | - | chr5_4:55168798-55168817 | Msa0858120:intron | 25.0% |
| !! | TCAGATAGCTATTATGTTTT+GGG | - | chr5_4:55168799-55168818 | Msa0858120:intron | 25.0% |
| !!! | TATTATGTTTTGGGTACAAT+TGG | - | chr5_4:55168808-55168827 | Msa0858120:intron | 25.0% |
| ! | AACTATAATGACAAAGACAA+GGG | + | chr5_4:55168982-55169001 | None:intergenic | 25.0% |
| ! | AAACTTGATATTGACAATCT+TGG | + | chr5_4:55169158-55169177 | None:intergenic | 25.0% |
| !! | ATCAAGTTTTTCATCAAGAT+CGG | - | chr5_4:55169169-55169188 | Msa0858120:intron | 25.0% |
| ! | CATCAATCTTGCTAAAAAAA+TGG | - | chr5_4:55169572-55169591 | Msa0858120:intron | 25.0% |
| ! | ATTGTATAAGTAATTGATCC+TGG | - | chr5_4:55169910-55169929 | Msa0858120:intron | 25.0% |
| !! | TTTCTGCAATTTTATGATAC+AGG | - | chr5_4:55169992-55170011 | Msa0858120:intron | 25.0% |
| !! | TTCTGCAATTTTATGATACA+GGG | - | chr5_4:55169993-55170012 | Msa0858120:intron | 25.0% |
| !! | CTTTCAATGTAAATTTTACC+CGG | + | chr5_4:55170144-55170163 | None:intergenic | 25.0% |
| ! | AGCTGAATGAAAAATTTATC+AGG | + | chr5_4:55170211-55170230 | None:intergenic | 25.0% |
| !! | TTTTGTTAAGTTATGCTAGT+TGG | - | chr5_4:55170592-55170611 | Msa0858120:intron | 25.0% |
| !! | TTAAGTTGTTTATCCTAACA+GGG | + | chr5_4:55170623-55170642 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCTAAC+AGG | + | chr5_4:55170624-55170643 | None:intergenic | 25.0% |
| ! | AAACACTTGTGATACTATTT+GGG | + | chr5_4:55170836-55170855 | None:intergenic | 25.0% |
| ! | TAAACACTTGTGATACTATT+TGG | + | chr5_4:55170837-55170856 | None:intergenic | 25.0% |
| ! | TCAAATAAGTTAATCCAAAC+AGG | - | chr5_4:55170872-55170891 | Msa0858120:intron | 25.0% |
| ! | GAAAAGAAAGAATAGATGAT+TGG | - | chr5_4:55171089-55171108 | Msa0858120:intron | 25.0% |
| !!! | AGTTAACTTTTTTCATGCTA+AGG | - | chr5_4:55171463-55171482 | Msa0858120:intron | 25.0% |
| !!! | GTTAACTTTTTTCATGCTAA+GGG | - | chr5_4:55171464-55171483 | Msa0858120:intron | 25.0% |
| ! | TGTAACTAGATATTTCTTCT+CGG | - | chr5_4:55171731-55171750 | Msa0858120:intron | 25.0% |
| ! | AACAAACACAATGCAAAAAA+TGG | + | chr5_4:55171830-55171849 | None:intergenic | 25.0% |
| !!! | AACGTATTGATTATTGACTA+TGG | + | chr5_4:55171861-55171880 | None:intergenic | 25.0% |
| ! | TCTTAAAAACATAAGGAAGA+AGG | - | chr5_4:55171917-55171936 | Msa0858120:CDS | 25.0% |
| !! | ACAGATTCAGAACAATATTT+TGG | + | chr5_4:55171973-55171992 | None:intergenic | 25.0% |
| ! | AAGATTATGAACCATATTCA+TGG | + | chr5_4:55172107-55172126 | None:intergenic | 25.0% |
| ! | TAACACCGTTCAAATTATTA+AGG | + | chr5_4:55172258-55172277 | None:intergenic | 25.0% |
| ! | TTAATAATTTGAACGGTGTT+AGG | - | chr5_4:55172257-55172276 | Msa0858120:intron | 25.0% |
| ! | ATCAAGACTATAGTGATATA+GGG | - | chr5_4:55172461-55172480 | Msa0858120:intron | 25.0% |
| !! | AAGAACACTTTGTACAATTT+TGG | + | chr5_4:55172624-55172643 | None:intergenic | 25.0% |
| ! | TTGAATATGCTAAATGAAGA+TGG | + | chr5_4:55172798-55172817 | None:intergenic | 25.0% |
| !!! | AGATTTGTTACTTGATGAAT+AGG | - | chr5_4:55172850-55172869 | Msa0858120:exon | 25.0% |
| !! | TAAACACGAATTTTTCCATT+TGG | + | chr5_4:55172929-55172948 | None:intergenic | 25.0% |
| ! | TTTGAAGTAGTTGTTGTACA+TGG | + | chr5_4:55166482-55166501 | None:intergenic | 30.0% |
| ! | AGGGTAGTTTTCAATTACTT+GGG | + | chr5_4:55166507-55166526 | None:intergenic | 30.0% |
| ! | AAGGGTAGTTTTCAATTACT+TGG | + | chr5_4:55166508-55166527 | None:intergenic | 30.0% |
| !! | GAATTTGTCGGTTTAAGAAA+AGG | + | chr5_4:55166527-55166546 | None:intergenic | 30.0% |
| CATAGTATCAAGAGAGAAAA+TGG | + | chr5_4:55166554-55166573 | None:intergenic | 30.0% | |
| !!! | GAGGATGTTTTATTTTTCTC+AGG | + | chr5_4:55166581-55166600 | None:intergenic | 30.0% |
| AAAACATCCTCAAAACATGT+CGG | - | chr5_4:55166637-55166656 | Msa0858120:three_prime_UTR | 30.0% | |
| AAAATCATACGGTTTGAAGA+GGG | + | chr5_4:55166724-55166743 | None:intergenic | 30.0% | |
| ! | GTTTTTGTGTTGTGATCTAT+AGG | - | chr5_4:55166811-55166830 | Msa0858120:CDS | 30.0% |
| ! | AACTTTTCAACAAATGTGTC+AGG | - | chr5_4:55166889-55166908 | Msa0858120:CDS | 30.0% |
| ACAAAGATCATGTGATTGTT+TGG | - | chr5_4:55166927-55166946 | Msa0858120:CDS | 30.0% | |
| GTGATTGTTTGGTTAATGTT+TGG | - | chr5_4:55166938-55166957 | Msa0858120:intron | 30.0% | |
| !!! | ATTTTTTGTTCCACTTTTGG+AGG | - | chr5_4:55167134-55167153 | Msa0858120:intron | 30.0% |
| ! | TACACCTCAAGAATCAATTT+TGG | + | chr5_4:55167162-55167181 | None:intergenic | 30.0% |
| TCAAGTAGAATCAATTCTAG+TGG | + | chr5_4:55167197-55167216 | None:intergenic | 30.0% | |
| TACTTGAAGCTAGAAATCAT+CGG | - | chr5_4:55167210-55167229 | Msa0858120:intron | 30.0% | |
| GAAAAACGGAAACTTGATAA+TGG | - | chr5_4:55167430-55167449 | Msa0858120:intron | 30.0% | |
| ! | TTTTTGGACTGAATGAAAGT+TGG | - | chr5_4:55167454-55167473 | Msa0858120:CDS | 30.0% |
| ! | GATTAGTTGTTTAGTGATTG+TGG | - | chr5_4:55167507-55167526 | Msa0858120:intron | 30.0% |
| AAAAACACTGAGCTAAAATG+AGG | + | chr5_4:55167631-55167650 | None:intergenic | 30.0% | |
| !!! | TCATTTTAGCTCAGTGTTTT+TGG | - | chr5_4:55167630-55167649 | Msa0858120:intron | 30.0% |
| ATGTAGTCCTTGAAATTGTA+AGG | - | chr5_4:55167682-55167701 | Msa0858120:intron | 30.0% | |
| AGGTCGTTTATTGATATAGA+TGG | - | chr5_4:55167868-55167887 | Msa0858120:intron | 30.0% | |
| AAGATTACGAAGTTAAGAAG+GGG | + | chr5_4:55168089-55168108 | None:intergenic | 30.0% | |
| GTAAGATTACGAAGTTAAGA+AGG | + | chr5_4:55168091-55168110 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGTTGTTGAAGAAG+TGG | - | chr5_4:55168150-55168169 | Msa0858120:intron | 30.0% |
| !!! | AGTTTTGTTGTTGAAGAAGT+GGG | - | chr5_4:55168151-55168170 | Msa0858120:intron | 30.0% |
| GCTAAGAGCAAGATTAATAA+TGG | - | chr5_4:55168246-55168265 | Msa0858120:intron | 30.0% | |
| ! | GAGCAAGATTAATAATGGAA+AGG | - | chr5_4:55168251-55168270 | Msa0858120:intron | 30.0% |
| ! | ATGTAATTTGAAGTTCTCTG+CGG | - | chr5_4:55168324-55168343 | Msa0858120:intron | 30.0% |
| AATAATACGGGTAGTAAACT+TGG | + | chr5_4:55168471-55168490 | None:intergenic | 30.0% | |
| ATTGTAGAAGGTTATTTGAG+GGG | - | chr5_4:55168488-55168507 | Msa0858120:intron | 30.0% | |
| TCAATAAATTCATTGGGGAT+TGG | - | chr5_4:55168585-55168604 | Msa0858120:intron | 30.0% | |
| ! | ACAAGACTTTTTACTTTCAC+TGG | - | chr5_4:55168669-55168688 | Msa0858120:intron | 30.0% |
| ! | TGCTTTTCTCACCATAATAA+AGG | + | chr5_4:55168707-55168726 | None:intergenic | 30.0% |
| TTTATTATGGTGAGAAAAGC+AGG | - | chr5_4:55168706-55168725 | Msa0858120:intron | 30.0% | |
| TTATTATGGTGAGAAAAGCA+GGG | - | chr5_4:55168707-55168726 | Msa0858120:intron | 30.0% | |
| !! | TTGGTTCTAGCATCATTATT+CGG | - | chr5_4:55168739-55168758 | Msa0858120:intron | 30.0% |
| AAAGAGGAGTAAAACCAAAA+AGG | - | chr5_4:55168764-55168783 | Msa0858120:intron | 30.0% | |
| !! | GAACAACTTTTTCTCCTTTT+TGG | + | chr5_4:55168781-55168800 | None:intergenic | 30.0% |
| GGGCTACTAAAATGAAAATT+TGG | + | chr5_4:55168962-55168981 | None:intergenic | 30.0% | |
| CAACTATAATGACAAAGACA+AGG | + | chr5_4:55168983-55169002 | None:intergenic | 30.0% | |
| GCTCAAATTGTTAAAATGAC+TGG | - | chr5_4:55169016-55169035 | Msa0858120:CDS | 30.0% | |
| ! | TTTGATGGACATCATATTTG+AGG | + | chr5_4:55169056-55169075 | None:intergenic | 30.0% |
| GTAACAGAGAAAAAGACATT+TGG | + | chr5_4:55169091-55169110 | None:intergenic | 30.0% | |
| TATTGACAATCTTGGTTAAG+AGG | + | chr5_4:55169150-55169169 | None:intergenic | 30.0% | |
| ! | TCAAGTTTTTCATCAAGATC+GGG | - | chr5_4:55169170-55169189 | Msa0858120:intron | 30.0% |
| ! | TATAGATTTTCGGCATAAGT+AGG | + | chr5_4:55169728-55169747 | None:intergenic | 30.0% |
| !!! | TCAAAGGCACTATAGATTTT+CGG | + | chr5_4:55169738-55169757 | None:intergenic | 30.0% |
| AATTACTTGAATTACTCGCA+TGG | - | chr5_4:55170172-55170191 | Msa0858120:intron | 30.0% | |
| TACAAGTATGGTATATTCAG+TGG | - | chr5_4:55170566-55170585 | Msa0858120:intron | 30.0% | |
| TAAATCAAGACTAAAAGCTC+AGG | + | chr5_4:55170926-55170945 | None:intergenic | 30.0% | |
| TATCAATCAGTTTAGGTGAT+TGG | - | chr5_4:55171192-55171211 | Msa0858120:intron | 30.0% | |
| !! | GTTGTTTTGTTACAAATCTC+AGG | - | chr5_4:55171501-55171520 | Msa0858120:intron | 30.0% |
| GACAAGAGACACAATTATAA+AGG | - | chr5_4:55172051-55172070 | Msa0858120:intron | 30.0% | |
| CATAGCAACATAAGCATATT+GGG | + | chr5_4:55172189-55172208 | None:intergenic | 30.0% | |
| ACATAGCAACATAAGCATAT+TGG | + | chr5_4:55172190-55172209 | None:intergenic | 30.0% | |
| ATGCCTTTAATCTTAAGTGT+TGG | - | chr5_4:55172375-55172394 | Msa0858120:intron | 30.0% | |
| GATCAAGACTATAGTGATAT+AGG | - | chr5_4:55172460-55172479 | Msa0858120:intron | 30.0% | |
| GAGTGTAGTCAAAGAATATA+AGG | + | chr5_4:55172506-55172525 | None:intergenic | 30.0% | |
| ACAGTATGTTCTTCAAATTC+AGG | - | chr5_4:55172530-55172549 | Msa0858120:intron | 30.0% | |
| !!! | GGGTTTAATGGATTTTACAA+AGG | - | chr5_4:55172590-55172609 | Msa0858120:intron | 30.0% |
| !!! | TAATGGATTTTACAAAGGCA+TGG | - | chr5_4:55172595-55172614 | Msa0858120:intron | 30.0% |
| !! | AATGGATTTTACAAAGGCAT+GGG | - | chr5_4:55172596-55172615 | Msa0858120:intron | 30.0% |
| !! | ACCTTTGACTTTAAAGTGTT+GGG | + | chr5_4:55172719-55172738 | None:intergenic | 30.0% |
| !! | AACCTTTGACTTTAAAGTGT+TGG | + | chr5_4:55172720-55172739 | None:intergenic | 30.0% |
| ! | ATTTAAGACATGCTTCCAAA+TGG | - | chr5_4:55172911-55172930 | Msa0858120:five_prime_UTR | 30.0% |
| GAAAATGGGAGTGAATTTGT+CGG | + | chr5_4:55166539-55166558 | None:intergenic | 35.0% | |
| GAAAATCATACGGTTTGAAG+AGG | + | chr5_4:55166725-55166744 | None:intergenic | 35.0% | |
| AGATTCTTATTGCCCTTCTT+CGG | + | chr5_4:55166866-55166885 | None:intergenic | 35.0% | |
| AAGAAGGGCAATAAGAATCT+TGG | - | chr5_4:55166866-55166885 | Msa0858120:CDS | 35.0% | |
| !! | CCTGTCTAAAATTGAGTTGA+AGG | + | chr5_4:55167324-55167343 | None:intergenic | 35.0% |
| ! | CCTTCAACTCAATTTTAGAC+AGG | - | chr5_4:55167321-55167340 | Msa0858120:intron | 35.0% |
| ! | GTATGTTTTGTCTCCACTTT+TGG | + | chr5_4:55167407-55167426 | None:intergenic | 35.0% |
| TGGTTATGTCAATGCATTGT+AGG | - | chr5_4:55167527-55167546 | Msa0858120:intron | 35.0% | |
| ATTGTAGGTTGTGAAACAAG+AGG | - | chr5_4:55167542-55167561 | Msa0858120:intron | 35.0% | |
| TTGTAGGTTGTGAAACAAGA+GGG | - | chr5_4:55167543-55167562 | Msa0858120:intron | 35.0% | |
| GTCCTTGAAATTGTAAGGAT+CGG | - | chr5_4:55167687-55167706 | Msa0858120:intron | 35.0% | |
| TAGTTCATTGCTCATGATGT+TGG | + | chr5_4:55168350-55168369 | None:intergenic | 35.0% | |
| GAAACTTCATGACATCGAAT+GGG | + | chr5_4:55168410-55168429 | None:intergenic | 35.0% | |
| TGAAACTTCATGACATCGAA+TGG | + | chr5_4:55168411-55168430 | None:intergenic | 35.0% | |
| ACTACCCGTATTATTGTAGA+AGG | - | chr5_4:55168476-55168495 | Msa0858120:intron | 35.0% | |
| !! | TTAGTTAGGTATGATGGACA+GGG | - | chr5_4:55168511-55168530 | Msa0858120:intron | 35.0% |
| !! | TAATTTGAAGGAAGTGTTGC+TGG | - | chr5_4:55168615-55168634 | Msa0858120:intron | 35.0% |
| AAGTGTTAGGGCCTTTATTA+TGG | - | chr5_4:55168693-55168712 | Msa0858120:intron | 35.0% | |
| GCATCATTATTCGGTAAAAG+AGG | - | chr5_4:55168748-55168767 | Msa0858120:intron | 35.0% | |
| AAGACTTGACTAAAGGTAGT+AGG | + | chr5_4:55168854-55168873 | None:intergenic | 35.0% | |
| ! | GGACTGTTTTCTGATTGATT+GGG | + | chr5_4:55169129-55169148 | None:intergenic | 35.0% |
| ! | AGGACTGTTTTCTGATTGAT+TGG | + | chr5_4:55169130-55169149 | None:intergenic | 35.0% |
| TCTTACCTATGTGATTACGT+TGG | - | chr5_4:55169227-55169246 | Msa0858120:CDS | 35.0% | |
| ! | GCTTTGAGTAGTTTCTTTCA+TGG | + | chr5_4:55169362-55169381 | None:intergenic | 35.0% |
| CAAACAGAGCAATCAAAAAC+CGG | - | chr5_4:55169476-55169495 | Msa0858120:intron | 35.0% | |
| AAACAGAGCAATCAAAAACC+GGG | - | chr5_4:55169477-55169496 | Msa0858120:intron | 35.0% | |
| ! | TCACAAGCCAGAAACAATTT+TGG | - | chr5_4:55169539-55169558 | Msa0858120:intron | 35.0% |
| GATCGTACCAAAATTGTTTC+TGG | + | chr5_4:55169549-55169568 | None:intergenic | 35.0% | |
| TCAAACCCTCCAATATGAAT+CGG | + | chr5_4:55169608-55169627 | None:intergenic | 35.0% | |
| ACCTTGATCTGAACTTAATG+TGG | - | chr5_4:55169678-55169697 | Msa0858120:intron | 35.0% | |
| ACCACATTAAGTTCAGATCA+AGG | + | chr5_4:55169682-55169701 | None:intergenic | 35.0% | |
| ATCTGAACTTAATGTGGTGT+AGG | - | chr5_4:55169684-55169703 | Msa0858120:intron | 35.0% | |
| CATTAACTTTGCAGAGTCAA+AGG | + | chr5_4:55169754-55169773 | None:intergenic | 35.0% | |
| ! | ATCCTGGTTGTTGAATTTTC+TGG | - | chr5_4:55169926-55169945 | Msa0858120:intron | 35.0% |
| TAAAGCAGCAACAATAAGTG+AGG | + | chr5_4:55170120-55170139 | None:intergenic | 35.0% | |
| !! | CTTATTGTTGCTGCTTTATC+CGG | - | chr5_4:55170122-55170141 | Msa0858120:intron | 35.0% |
| !! | TTATTGTTGCTGCTTTATCC+GGG | - | chr5_4:55170123-55170142 | Msa0858120:intron | 35.0% |
| GTTGTTTGCATAAGCTATTC+CGG | - | chr5_4:55170747-55170766 | Msa0858120:intron | 35.0% | |
| AATTATCTCCATAAGCACTC+CGG | + | chr5_4:55170769-55170788 | None:intergenic | 35.0% | |
| ! | ATGTCATGAGTTGTTTCCAT+AGG | - | chr5_4:55170806-55170825 | Msa0858120:intron | 35.0% |
| CAAAAATCTCATTGGCAACT+AGG | + | chr5_4:55170899-55170918 | None:intergenic | 35.0% | |
| ! | CTAGTTGCCAATGAGATTTT+TGG | - | chr5_4:55170897-55170916 | Msa0858120:intron | 35.0% |
| AATAGGTGTTTGCGTAGTTA+TGG | - | chr5_4:55170995-55171014 | Msa0858120:intron | 35.0% | |
| ATAGGTGTTTGCGTAGTTAT+GGG | - | chr5_4:55170996-55171015 | Msa0858120:intron | 35.0% | |
| ! | TTTTGACATCCCAACTATGT+TGG | + | chr5_4:55171025-55171044 | None:intergenic | 35.0% |
| AATCAGTTTAGGTGATTGGA+AGG | - | chr5_4:55171196-55171215 | Msa0858120:intron | 35.0% | |
| TGTTGTCTTGAATAGTTGAC+AGG | + | chr5_4:55171310-55171329 | None:intergenic | 35.0% | |
| GATTCAAGAAGTTTATGACG+AGG | - | chr5_4:55171383-55171402 | Msa0858120:intron | 35.0% | |
| TGTATTACCAACATTGGTCA+TGG | - | chr5_4:55171431-55171450 | Msa0858120:intron | 35.0% | |
| TACAGCATGAACTGTATAGA+AGG | + | chr5_4:55171535-55171554 | None:intergenic | 35.0% | |
| !!! | TTTTTTCAACTTCGCCAACA+AGG | + | chr5_4:55171563-55171582 | None:intergenic | 35.0% |
| TATACCTTCACAACAAGAAG+AGG | + | chr5_4:55171794-55171813 | None:intergenic | 35.0% | |
| CAAGCTAGACAAGTTAACAA+TGG | - | chr5_4:55172027-55172046 | Msa0858120:intron | 35.0% | |
| TATGTTGCTATGTCAGCATA+AGG | - | chr5_4:55172197-55172216 | Msa0858120:intron | 35.0% | |
| CAGCATAAGGAAATACTATG+TGG | - | chr5_4:55172210-55172229 | Msa0858120:intron | 35.0% | |
| TAAGGAAATACTATGTGGCA+TGG | - | chr5_4:55172215-55172234 | Msa0858120:intron | 35.0% | |
| GCACCAACACTTAAGATTAA+AGG | + | chr5_4:55172381-55172400 | None:intergenic | 35.0% | |
| TTCTTCAAATTCAGGTACAC+AGG | - | chr5_4:55172538-55172557 | Msa0858120:intron | 35.0% | |
| ATTAAGATGATCCGCTATGA+AGG | - | chr5_4:55172569-55172588 | Msa0858120:intron | 35.0% | |
| TTAAGATGATCCGCTATGAA+GGG | - | chr5_4:55172570-55172589 | Msa0858120:intron | 35.0% | |
| ATCCATTAAACCCTTCATAG+CGG | + | chr5_4:55172583-55172602 | None:intergenic | 35.0% | |
| !! | TCCCAACACTTTAAAGTCAA+AGG | - | chr5_4:55172715-55172734 | Msa0858120:intron | 35.0% |
| AGTCAAAGGTTGTGTGAATT+TGG | - | chr5_4:55172729-55172748 | Msa0858120:intron | 35.0% | |
| TTCGTGAGTAATGAATCTGA+GGG | + | chr5_4:55172775-55172794 | None:intergenic | 35.0% | |
| TAGGAAATAGACTGTGTCAT+TGG | - | chr5_4:55172826-55172845 | Msa0858120:CDS | 35.0% | |
| !!! | AATTTTGGCTCCTCCAAAAG+TGG | + | chr5_4:55167391-55167410 | None:intergenic | 40.0% |
| ! | GGAGCCAAAATTGATTCTTG+AGG | - | chr5_4:55167155-55167174 | Msa0858120:intron | 40.0% |
| !!! | AATTTTGGCTCCTCCAAAAG+TGG | - | chr5_4:55167391-55167410 | Msa0858120:intron | 40.0% |
| !! | TGTTTTGTCTCCACTTTTGG+AGG | + | chr5_4:55167404-55167423 | None:intergenic | 40.0% |
| GACCGATCCTTACAATTTCA+AGG | + | chr5_4:55167692-55167711 | None:intergenic | 40.0% | |
| GACAGAGGGACTAAATTGAT+CGG | - | chr5_4:55167913-55167932 | Msa0858120:CDS | 40.0% | |
| TTCAGTCCTCGAAATTGTCA+GGG | + | chr5_4:55168031-55168050 | None:intergenic | 40.0% | |
| TTTCAGTCCTCGAAATTGTC+AGG | + | chr5_4:55168032-55168051 | None:intergenic | 40.0% | |
| ATACGGGTAGTAAACTTGGA+GGG | + | chr5_4:55168467-55168486 | None:intergenic | 40.0% | |
| AATACGGGTAGTAAACTTGG+AGG | + | chr5_4:55168468-55168487 | None:intergenic | 40.0% | |
| !! | GGTTATTTGAGGGGTTAGTT+AGG | - | chr5_4:55168497-55168516 | Msa0858120:intron | 40.0% |
| !! | GTTAGTTAGGTATGATGGAC+AGG | - | chr5_4:55168510-55168529 | Msa0858120:intron | 40.0% |
| ACAGGGAAATCTTTGTGAAG+TGG | - | chr5_4:55168528-55168547 | Msa0858120:intron | 40.0% | |
| TGTGAAGTGGTTGTCACTAT+AGG | - | chr5_4:55168541-55168560 | Msa0858120:intron | 40.0% | |
| GTGAAGTGGTTGTCACTATA+GGG | - | chr5_4:55168542-55168561 | Msa0858120:intron | 40.0% | |
| GTCACTATAGGGAGAGAATA+AGG | - | chr5_4:55168553-55168572 | Msa0858120:intron | 40.0% | |
| TACTTTCACTGGCAAGTGTT+AGG | - | chr5_4:55168680-55168699 | Msa0858120:intron | 40.0% | |
| ACTTTCACTGGCAAGTGTTA+GGG | - | chr5_4:55168681-55168700 | Msa0858120:intron | 40.0% | |
| TGTGACTAAGGGGTTGTTAT+GGG | + | chr5_4:55168879-55168898 | None:intergenic | 40.0% | |
| ! | TGGAAGTATGTGTGACTAAG+GGG | + | chr5_4:55168889-55168908 | None:intergenic | 40.0% |
| ! | CTGGAAGTATGTGTGACTAA+GGG | + | chr5_4:55168890-55168909 | None:intergenic | 40.0% |
| TAAAGTCTAAACTTGCCACC+TGG | + | chr5_4:55168909-55168928 | None:intergenic | 40.0% | |
| ! | TGGTTCTTAAGCTGCTTTGA+TGG | + | chr5_4:55169071-55169090 | None:intergenic | 40.0% |
| ! | AGTTTTTCATCAAGATCGGG+AGG | - | chr5_4:55169173-55169192 | Msa0858120:intron | 40.0% |
| ! | GTTTTTCATCAAGATCGGGA+GGG | - | chr5_4:55169174-55169193 | Msa0858120:intron | 40.0% |
| ! | TTTTTCATCAAGATCGGGAG+GGG | - | chr5_4:55169175-55169194 | Msa0858120:intron | 40.0% |
| CTGATCCAACGTAATCACAT+AGG | + | chr5_4:55169235-55169254 | None:intergenic | 40.0% | |
| CTATGTGATTACGTTGGATC+AGG | - | chr5_4:55169233-55169252 | Msa0858120:CDS | 40.0% | |
| TGTGAAATTGCAGGGTTACT+CGG | + | chr5_4:55169524-55169543 | None:intergenic | 40.0% | |
| !! | TTCTGGCTTGTGAAATTGCA+GGG | + | chr5_4:55169532-55169551 | None:intergenic | 40.0% |
| !! | TTTCTGGCTTGTGAAATTGC+AGG | + | chr5_4:55169533-55169552 | None:intergenic | 40.0% |
| ATCTTGCACCCGATTCATAT+TGG | - | chr5_4:55169596-55169615 | Msa0858120:intron | 40.0% | |
| CAAACCCTCCAATATGAATC+GGG | + | chr5_4:55169607-55169626 | None:intergenic | 40.0% | |
| TGCCAGAAAATTCAACAACC+AGG | + | chr5_4:55169931-55169950 | None:intergenic | 40.0% | |
| TCTCATATTCTCTAGTGCAG+CGG | + | chr5_4:55170063-55170082 | None:intergenic | 40.0% | |
| GCACTAGAGAATATGAGACT+AGG | - | chr5_4:55170065-55170084 | Msa0858120:intron | 40.0% | |
| TGCTGTTGACAAATCCGATA+TGG | - | chr5_4:55170240-55170259 | Msa0858120:intron | 40.0% | |
| CGAGTAACAACTAGCCATAT+CGG | + | chr5_4:55170257-55170276 | None:intergenic | 40.0% | |
| ! | ATGGCTAGTTCCATAAGCAA+GGG | + | chr5_4:55170487-55170506 | None:intergenic | 40.0% |
| GATAGACTTTACCTACCACA+TGG | + | chr5_4:55170506-55170525 | None:intergenic | 40.0% | |
| ATACTATTTGGGAGAGCCTA+TGG | + | chr5_4:55170825-55170844 | None:intergenic | 40.0% | |
| CAGGTCACCAAAAATCTCAT+TGG | + | chr5_4:55170907-55170926 | None:intergenic | 40.0% | |
| TAGGTGTTTGCGTAGTTATG+GGG | - | chr5_4:55170997-55171016 | Msa0858120:intron | 40.0% | |
| AGTTGACAGGAACAAGAGAA+GGG | + | chr5_4:55171297-55171316 | None:intergenic | 40.0% | |
| TAGTTGACAGGAACAAGAGA+AGG | + | chr5_4:55171298-55171317 | None:intergenic | 40.0% | |
| ! | GAAGGGTGTATTACCAACAT+TGG | - | chr5_4:55171425-55171444 | Msa0858120:intron | 40.0% |
| CATGCTGTATGAAACCTTGT+TGG | - | chr5_4:55171546-55171565 | Msa0858120:intron | 40.0% | |
| TAGTAGCGTAACTGCTTTAG+AGG | - | chr5_4:55171591-55171610 | Msa0858120:intron | 40.0% | |
| CTTCACAACAAGAAGAGGAT+AGG | + | chr5_4:55171789-55171808 | None:intergenic | 40.0% | |
| ! | CTATCCTCTTCTTGTTGTGA+AGG | - | chr5_4:55171787-55171806 | Msa0858120:intron | 40.0% |
| GGAGCTGACAAAATTAAACG+AGG | - | chr5_4:55171938-55171957 | Msa0858120:CDS | 40.0% | |
| GCAACATAAGCATATTGGGA+GGG | + | chr5_4:55172185-55172204 | None:intergenic | 40.0% | |
| AGCAACATAAGCATATTGGG+AGG | + | chr5_4:55172186-55172205 | None:intergenic | 40.0% | |
| ! | GGTAATACGAAGCACTAACA+CGG | - | chr5_4:55172278-55172297 | Msa0858120:intron | 40.0% |
| ACAATTCCTTCTGTTGTGTC+CGG | + | chr5_4:55172307-55172326 | None:intergenic | 40.0% | |
| TATAAGTGTCAGTGTCGTGT+CGG | - | chr5_4:55172334-55172353 | Msa0858120:intron | 40.0% | |
| !! | TAAGTGTTGGTGCGACATAT+AGG | - | chr5_4:55172388-55172407 | Msa0858120:intron | 40.0% |
| ATCCGCTATGAAGGGTTTAA+TGG | - | chr5_4:55172578-55172597 | Msa0858120:intron | 40.0% | |
| !!! | TGCTGCAGCTGTTTTGTTTA+TGG | - | chr5_4:55172643-55172662 | Msa0858120:CDS | 40.0% |
| GTTCGTGAGTAATGAATCTG+AGG | + | chr5_4:55172776-55172795 | None:intergenic | 40.0% | |
| !! | AAAGCGTCCGACATGTTTTG+AGG | + | chr5_4:55166647-55166666 | None:intergenic | 45.0% |
| ATGTCGGACGCTTTGATCAA+TGG | - | chr5_4:55166653-55166672 | Msa0858120:three_prime_UTR | 45.0% | |
| GGACGCTTTGATCAATGGAT+TGG | - | chr5_4:55166658-55166677 | Msa0858120:three_prime_UTR | 45.0% | |
| !! | GCTTTGATCAATGGATTGGC+TGG | - | chr5_4:55166662-55166681 | Msa0858120:three_prime_UTR | 45.0% |
| AACTGATCGTGATCCGAAGA+AGG | - | chr5_4:55166850-55166869 | Msa0858120:CDS | 45.0% | |
| ACTGATCGTGATCCGAAGAA+GGG | - | chr5_4:55166851-55166870 | Msa0858120:CDS | 45.0% | |
| TTGGTTAATGTTTGGCCGTG+AGG | - | chr5_4:55166946-55166965 | Msa0858120:intron | 45.0% | |
| AGGTTGTGAAACAAGAGGGA+TGG | - | chr5_4:55167547-55167566 | Msa0858120:intron | 45.0% | |
| GGTTGTGAAACAAGAGGGAT+GGG | - | chr5_4:55167548-55167567 | Msa0858120:intron | 45.0% | |
| AGTTGACCCTGACAATTTCG+AGG | - | chr5_4:55168022-55168041 | Msa0858120:intron | 45.0% | |
| !! | GAGGGGTTAGTTAGGTATGA+TGG | - | chr5_4:55168505-55168524 | Msa0858120:intron | 45.0% |
| AAAAGCAGGGAAGCTTCTCT+TGG | - | chr5_4:55168720-55168739 | Msa0858120:intron | 45.0% | |
| ATGGGGGAAGACTTGACTAA+AGG | + | chr5_4:55168861-55168880 | None:intergenic | 45.0% | |
| TGACTAAGGGGTTGTTATGG+GGG | + | chr5_4:55168877-55168896 | None:intergenic | 45.0% | |
| GTGACTAAGGGGTTGTTATG+GGG | + | chr5_4:55168878-55168897 | None:intergenic | 45.0% | |
| GTGTGACTAAGGGGTTGTTA+TGG | + | chr5_4:55168880-55168899 | None:intergenic | 45.0% | |
| ! | CCTGGAAGTATGTGTGACTA+AGG | + | chr5_4:55168891-55168910 | None:intergenic | 45.0% |
| CCTTAGTCACACATACTTCC+AGG | - | chr5_4:55168888-55168907 | Msa0858120:intron | 45.0% | |
| TAGTCACACATACTTCCAGG+TGG | - | chr5_4:55168891-55168910 | Msa0858120:intron | 45.0% | |
| ! | TTTTCATCAAGATCGGGAGG+GGG | - | chr5_4:55169176-55169195 | Msa0858120:intron | 45.0% |
| GTGATTACGTTGGATCAGGA+AGG | - | chr5_4:55169237-55169256 | Msa0858120:CDS | 45.0% | |
| TTGCACCCGATTCATATTGG+AGG | - | chr5_4:55169599-55169618 | Msa0858120:intron | 45.0% | |
| TGCACCCGATTCATATTGGA+GGG | - | chr5_4:55169600-55169619 | Msa0858120:intron | 45.0% | |
| TCATATTGGAGGGTTTGAGC+AGG | - | chr5_4:55169610-55169629 | Msa0858120:intron | 45.0% | |
| GAGAATATGAGACTAGGCAG+TGG | - | chr5_4:55170071-55170090 | Msa0858120:intron | 45.0% | |
| GCTAGTTGTTACTCGTATGC+AGG | - | chr5_4:55170262-55170281 | Msa0858120:intron | 45.0% | |
| AGACGCATAGAAAAGAGTCG+AGG | - | chr5_4:55170397-55170416 | Msa0858120:intron | 45.0% | |
| ! | TGGCTAGTTCCATAAGCAAG+GGG | + | chr5_4:55170486-55170505 | None:intergenic | 45.0% |
| ! | CATGGCTAGTTCCATAAGCA+AGG | + | chr5_4:55170488-55170507 | None:intergenic | 45.0% |
| TGCTTATGGAACTAGCCATG+TGG | - | chr5_4:55170488-55170507 | Msa0858120:intron | 45.0% | |
| TATGGAACTAGCCATGTGGT+AGG | - | chr5_4:55170492-55170511 | Msa0858120:intron | 45.0% | |
| ! | AAGCTATTCCGGAGTGCTTA+TGG | - | chr5_4:55170758-55170777 | Msa0858120:intron | 45.0% |
| ATTGGCAACTAGGACCTGTT+TGG | + | chr5_4:55170889-55170908 | None:intergenic | 45.0% | |
| AGGTGTTTGCGTAGTTATGG+GGG | - | chr5_4:55170998-55171017 | Msa0858120:intron | 45.0% | |
| GATGTCAAAACTGCCATGTG+AGG | - | chr5_4:55171035-55171054 | Msa0858120:intron | 45.0% | |
| TATACGGCAAAAGCCTCACA+TGG | + | chr5_4:55171051-55171070 | None:intergenic | 45.0% | |
| CAAGAAGTTTATGACGAGGC+TGG | - | chr5_4:55171387-55171406 | Msa0858120:intron | 45.0% | |
| ! | TTATGACGAGGCTGGAGTTT+TGG | - | chr5_4:55171395-55171414 | Msa0858120:intron | 45.0% |
| ! | TATGACGAGGCTGGAGTTTT+GGG | - | chr5_4:55171396-55171415 | Msa0858120:intron | 45.0% |
| !!! | TGGAGTTTTGGGTTTCTGGA+AGG | - | chr5_4:55171407-55171426 | Msa0858120:intron | 45.0% |
| !!! | GGAGTTTTGGGTTTCTGGAA+GGG | - | chr5_4:55171408-55171427 | Msa0858120:intron | 45.0% |
| CAACGTACCATGACCAATGT+TGG | + | chr5_4:55171441-55171460 | None:intergenic | 45.0% | |
| !!! | GTTGCTTTTGTTGCTATCGC+AGG | - | chr5_4:55171996-55172015 | Msa0858120:intron | 45.0% |
| ! | TTTTGTTGCTATCGCAGGCA+AGG | - | chr5_4:55172001-55172020 | Msa0858120:intron | 45.0% |
| GGGAACATTCTTTGCAAGCA+AGG | + | chr5_4:55172699-55172718 | None:intergenic | 45.0% | |
| !! | ATCAATGGATTGGCTGGAGC+TGG | - | chr5_4:55166668-55166687 | Msa0858120:three_prime_UTR | 50.0% |
| TGAAACAAGAGGGATGGGAG+AGG | - | chr5_4:55167553-55167572 | Msa0858120:intron | 50.0% | |
| ! | GTAGCTGTACCGACAAGTGA+TGG | + | chr5_4:55167597-55167616 | None:intergenic | 50.0% |
| TGTCGGTACAGCTACATCTC+AGG | - | chr5_4:55167602-55167621 | Msa0858120:intron | 50.0% | |
| GGGTAGTAAACTTGGAGGGT+TGG | + | chr5_4:55168463-55168482 | None:intergenic | 50.0% | |
| GGGGTTGCAAGATTGCAACT+AGG | - | chr5_4:55169195-55169214 | Msa0858120:intron | 50.0% | |
| ATGAGACTAGGCAGTGGTGA+TGG | - | chr5_4:55170077-55170096 | Msa0858120:intron | 50.0% | |
| CATCTGACAACCTCGGATCA+GGG | + | chr5_4:55170431-55170450 | None:intergenic | 50.0% | |
| ACTGTTGAGCCCCTTGCTTA+TGG | - | chr5_4:55170474-55170493 | Msa0858120:intron | 50.0% | |
| CTAGTTGGCTAGACCCTGTT+AGG | - | chr5_4:55170607-55170626 | Msa0858120:intron | 50.0% | |
| GGTGTTTGCGTAGTTATGGG+GGG | - | chr5_4:55170999-55171018 | Msa0858120:intron | 50.0% | |
| TTATGGGGGGCCAACATAGT+TGG | - | chr5_4:55171012-55171031 | Msa0858120:intron | 50.0% | |
| TATGGGGGGCCAACATAGTT+GGG | - | chr5_4:55171013-55171032 | Msa0858120:intron | 50.0% | |
| !!! | AGGCTGGAGTTTTGGGTTTC+TGG | - | chr5_4:55171403-55171422 | Msa0858120:intron | 50.0% |
| AAGGCATGTCCGAGTGTCTT+GGG | + | chr5_4:55172362-55172381 | None:intergenic | 50.0% | |
| ! | AAAGGCATGTCCGAGTGTCT+TGG | + | chr5_4:55172363-55172382 | None:intergenic | 50.0% |
| !! | AATGGATTGGCTGGAGCTGG+TGG | - | chr5_4:55166671-55166690 | Msa0858120:three_prime_UTR | 55.0% |
| GAGGGATGGGAGAGGTTGTA+TGG | - | chr5_4:55167561-55167580 | Msa0858120:intron | 55.0% | |
| GGATGGGAGAGGTTGTATGG+AGG | - | chr5_4:55167564-55167583 | Msa0858120:intron | 55.0% | |
| GGAGAGGTTGTATGGAGGCT+TGG | - | chr5_4:55167569-55167588 | Msa0858120:intron | 55.0% | |
| TACTCGGGTCATGCACAACC+CGG | + | chr5_4:55169498-55169517 | None:intergenic | 55.0% | |
| AGGGTTACTCGGAGCTACTC+GGG | + | chr5_4:55169513-55169532 | None:intergenic | 55.0% | |
| CAGGGTTACTCGGAGCTACT+CGG | + | chr5_4:55169514-55169533 | None:intergenic | 55.0% | |
| !! | GGCAGTGGTGATGGATCAGT+TGG | - | chr5_4:55170086-55170105 | Msa0858120:intron | 55.0% |
| GGAAAACTCTCCCTGATCCG+AGG | - | chr5_4:55170418-55170437 | Msa0858120:intron | 55.0% | |
| GCATCTGACAACCTCGGATC+AGG | + | chr5_4:55170432-55170451 | None:intergenic | 55.0% | |
| ! | CGAAGCACTAACACGGACAC+CGG | - | chr5_4:55172285-55172304 | Msa0858120:intron | 55.0% |
| ! | GATTGGCTGGAGCTGGTGGA+GGG | - | chr5_4:55166675-55166694 | Msa0858120:three_prime_UTR | 60.0% |
| GGCTTGGCGCCATCACTTGT+CGG | - | chr5_4:55167585-55167604 | Msa0858120:intron | 60.0% | |
| CTCGGAGCTGTCGCTAAGCT+TGG | - | chr5_4:55171749-55171768 | Msa0858120:intron | 60.0% | |
| CGGACACCGGACACAACAGA+AGG | - | chr5_4:55172298-55172317 | Msa0858120:intron | 60.0% | |
| ! | GTGTCGGTGCCCAAGACACT+CGG | - | chr5_4:55172350-55172369 | Msa0858120:intron | 60.0% |
| !! | GGATTGGCTGGAGCTGGTGG+AGG | - | chr5_4:55166674-55166693 | Msa0858120:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 55166457 | 55173051 | 55166457 | ID=Msa0858120;Name=Msa0858120 |
| chr5_4 | mRNA | 55166457 | 55173051 | 55166457 | ID=Msa0858120-mRNA-1;Parent=Msa0858120;Name=Msa0858120-mRNA-1;_AED=0.11;_eAED=0.11;_QI=172|1|1|1|0.83|0.69|13|258|335 |
| chr5_4 | exon | 55166457 | 55166508 | 55166457 | ID=Msa0858120-mRNA-1:exon:16956;Parent=Msa0858120-mRNA-1 |
| chr5_4 | exon | 55166557 | 55166956 | 55166557 | ID=Msa0858120-mRNA-1:exon:16955;Parent=Msa0858120-mRNA-1 |
| chr5_4 | exon | 55167436 | 55167490 | 55167436 | ID=Msa0858120-mRNA-1:exon:16954;Parent=Msa0858120-mRNA-1 |
| chr5_4 | exon | 55167700 | 55167768 | 55167700 | ID=Msa0858120-mRNA-1:exon:16953;Parent=Msa0858120-mRNA-1 |
| chr5_4 | exon | 55167896 | 55167985 | 55167896 | ID=Msa0858120-mRNA-1:exon:16952;Parent=Msa0858120-mRNA-1 |
| chr5_4 | exon | 55168056 | 55168124 | 55168056 | ID=Msa0858120-mRNA-1:exon:16951;Parent=Msa0858120-mRNA-1 |
| chr5_4 | exon | 55168999 | 55169109 | 55168999 | ID=Msa0858120-mRNA-1:exon:16950;Parent=Msa0858120-mRNA-1 |
| chr5_4 | exon | 55169225 | 55169279 | 55169225 | ID=Msa0858120-mRNA-1:exon:16949;Parent=Msa0858120-mRNA-1 |
| chr5_4 | exon | 55169364 | 55169494 | 55169364 | ID=Msa0858120-mRNA-1:exon:16948;Parent=Msa0858120-mRNA-1 |
| chr5_4 | exon | 55171885 | 55171959 | 55171885 | ID=Msa0858120-mRNA-1:exon:16947;Parent=Msa0858120-mRNA-1 |
| chr5_4 | exon | 55172598 | 55172675 | 55172598 | ID=Msa0858120-mRNA-1:exon:16946;Parent=Msa0858120-mRNA-1 |
| chr5_4 | exon | 55172775 | 55172940 | 55172775 | ID=Msa0858120-mRNA-1:exon:16945;Parent=Msa0858120-mRNA-1 |
| chr5_4 | exon | 55172965 | 55173051 | 55172965 | ID=Msa0858120-mRNA-1:exon:16944;Parent=Msa0858120-mRNA-1 |
| chr5_4 | five_prime_UTR | 55172965 | 55173051 | 55172965 | ID=Msa0858120-mRNA-1:five_prime_utr;Parent=Msa0858120-mRNA-1 |
| chr5_4 | five_prime_UTR | 55172856 | 55172940 | 55172856 | ID=Msa0858120-mRNA-1:five_prime_utr;Parent=Msa0858120-mRNA-1 |
| chr5_4 | CDS | 55172775 | 55172855 | 55172775 | ID=Msa0858120-mRNA-1:cds;Parent=Msa0858120-mRNA-1 |
| chr5_4 | CDS | 55172598 | 55172675 | 55172598 | ID=Msa0858120-mRNA-1:cds;Parent=Msa0858120-mRNA-1 |
| chr5_4 | CDS | 55171885 | 55171959 | 55171885 | ID=Msa0858120-mRNA-1:cds;Parent=Msa0858120-mRNA-1 |
| chr5_4 | CDS | 55169364 | 55169494 | 55169364 | ID=Msa0858120-mRNA-1:cds;Parent=Msa0858120-mRNA-1 |
| chr5_4 | CDS | 55169225 | 55169279 | 55169225 | ID=Msa0858120-mRNA-1:cds;Parent=Msa0858120-mRNA-1 |
| chr5_4 | CDS | 55168999 | 55169109 | 55168999 | ID=Msa0858120-mRNA-1:cds;Parent=Msa0858120-mRNA-1 |
| chr5_4 | CDS | 55168056 | 55168124 | 55168056 | ID=Msa0858120-mRNA-1:cds;Parent=Msa0858120-mRNA-1 |
| chr5_4 | CDS | 55167896 | 55167985 | 55167896 | ID=Msa0858120-mRNA-1:cds;Parent=Msa0858120-mRNA-1 |
| chr5_4 | CDS | 55167700 | 55167768 | 55167700 | ID=Msa0858120-mRNA-1:cds;Parent=Msa0858120-mRNA-1 |
| chr5_4 | CDS | 55167436 | 55167490 | 55167436 | ID=Msa0858120-mRNA-1:cds;Parent=Msa0858120-mRNA-1 |
| chr5_4 | CDS | 55166763 | 55166956 | 55166763 | ID=Msa0858120-mRNA-1:cds;Parent=Msa0858120-mRNA-1 |
| chr5_4 | three_prime_UTR | 55166557 | 55166762 | 55166557 | ID=Msa0858120-mRNA-1:three_prime_utr;Parent=Msa0858120-mRNA-1 |
| chr5_4 | three_prime_UTR | 55166457 | 55166508 | 55166457 | ID=Msa0858120-mRNA-1:three_prime_utr;Parent=Msa0858120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
