Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872810 | XP_013450993.1 | 93.002 | 643 | 42 | 3 | 1 | 642 | 1 | 641 | 0.0 | 1091 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0117520 | Msa0872810 | 0.819123 | 1.369875e-52 | -8.615850e-47 |
| Msa0604290 | Msa0872810 | 0.802789 | 4.748002e-49 | -8.615850e-47 |
| Msa0705990 | Msa0872810 | 0.804171 | 2.455100e-49 | -8.615850e-47 |
| Msa0160960 | Msa0872810 | 0.805972 | 1.031102e-49 | -8.615850e-47 |
| Msa0233370 | Msa0872810 | 0.816163 | 6.372239e-52 | -8.615850e-47 |
| Msa0241140 | Msa0872810 | 0.802034 | 6.795189e-49 | -8.615850e-47 |
| Msa0308440 | Msa0872810 | 0.802246 | 6.143515e-49 | -8.615850e-47 |
| Msa0872810 | Msa0933760 | 0.803260 | 3.794874e-49 | -8.615850e-47 |
| Msa0872810 | Msa0975320 | 0.812097 | 5.032558e-51 | -8.615850e-47 |
| Msa0872810 | Msa1236110 | -0.813967 | 1.957107e-51 | -8.615850e-47 |
| Msa0872810 | Msa1271130 | 0.808570 | 2.901921e-50 | -8.615850e-47 |
| Msa0872810 | Msa1325410 | -0.804180 | 2.444932e-49 | -8.615850e-47 |
| Msa0872810 | Msa1340200 | 0.820047 | 8.432153e-53 | -8.615850e-47 |
| Msa0872810 | Msa1346840 | 0.810868 | 9.306667e-51 | -8.615850e-47 |
| Msa0872810 | Msa1434090 | 0.803697 | 3.079827e-49 | -8.615850e-47 |
| Msa0872810 | Msa1437330 | 0.802788 | 4.750846e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872810 | MtrunA17_Chr6g0454021 | 93.002 | 643 | 42 | 3 | 1 | 642 | 1 | 641 | 0.0 | 1091 |
| Msa0872810 | MtrunA17_Chr7g0218361 | 44.014 | 284 | 99 | 11 | 387 | 636 | 288 | 545 | 5.71e-42 | 159 |
| Msa0872810 | MtrunA17_Chr7g0218361 | 35.165 | 273 | 130 | 7 | 3 | 246 | 2 | 256 | 1.69e-25 | 111 |
| Msa0872810 | MtrunA17_Chr4g0061221 | 41.830 | 153 | 48 | 4 | 521 | 632 | 600 | 752 | 1.43e-21 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872810 | AT5G39380.4 | 42.244 | 303 | 153 | 8 | 340 | 634 | 218 | 506 | 1.39e-43 | 164 |
| Msa0872810 | AT5G39380.3 | 42.244 | 303 | 153 | 8 | 340 | 634 | 218 | 506 | 1.39e-43 | 164 |
| Msa0872810 | AT5G39380.5 | 42.244 | 303 | 153 | 8 | 340 | 634 | 218 | 506 | 1.39e-43 | 164 |
| Msa0872810 | AT5G39380.2 | 42.244 | 303 | 153 | 8 | 340 | 634 | 218 | 506 | 1.39e-43 | 164 |
| Msa0872810 | AT5G39380.1 | 42.244 | 303 | 153 | 8 | 340 | 634 | 218 | 506 | 1.39e-43 | 164 |
| Msa0872810 | AT5G15430.2 | 40.773 | 233 | 119 | 6 | 415 | 641 | 259 | 478 | 3.64e-28 | 119 |
| Msa0872810 | AT5G15430.1 | 40.773 | 233 | 119 | 6 | 415 | 641 | 259 | 478 | 3.64e-28 | 119 |
| Msa0872810 | AT5G61260.1 | 47.458 | 118 | 56 | 3 | 521 | 634 | 355 | 470 | 6.16e-21 | 97.1 |
| Msa0872810 | AT5G61260.2 | 47.458 | 118 | 56 | 3 | 521 | 634 | 355 | 470 | 6.16e-21 | 97.1 |
| Msa0872810 | AT5G61260.3 | 47.458 | 118 | 56 | 3 | 521 | 634 | 355 | 470 | 6.16e-21 | 97.1 |
| Msa0872810 | AT5G07820.1 | 48.276 | 116 | 58 | 2 | 521 | 634 | 423 | 538 | 5.28e-17 | 85.1 |
Find 111 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAAGCCCTTATGCTTTC+TGG | 0.094132 | 6_1:-8403865 | None:intergenic |
| TGAAAATTGTGTCTCATCTT+AGG | 0.198519 | 6_1:+8403883 | Msa0872810:CDS |
| TCAACATCCTTAACCTTTCT+TGG | 0.205855 | 6_1:-8404230 | None:intergenic |
| TCCTGTTGTCTTGGTAGTTT+TGG | 0.209591 | 6_1:-8403577 | None:intergenic |
| CTTGGAATCGGCCGATATTT+TGG | 0.218154 | 6_1:-8403001 | None:intergenic |
| GACATTGTATGTCGTCAATA+TGG | 0.285872 | 6_1:+8403968 | Msa0872810:CDS |
| TGAAGAAAGTGTTGAGTTAT+CGG | 0.298063 | 6_1:+8402723 | Msa0872810:CDS |
| TGAATGAAGTTAAGGTTAAC+AGG | 0.306654 | 6_1:+8403199 | Msa0872810:CDS |
| GCAAGGCTAGCTCTGGAAAA+AGG | 0.334491 | 6_1:+8402800 | Msa0872810:CDS |
| GAAAATTCTTGACTTGTTGA+TGG | 0.365068 | 6_1:-8403276 | None:intergenic |
| TCTAAATTCCAGAAAGCATA+AGG | 0.366044 | 6_1:+8403857 | Msa0872810:CDS |
| GGCATCAGAAATTCCGGTCT+TGG | 0.366830 | 6_1:-8403118 | None:intergenic |
| CTCCTAGGAAGCTTAAATTT+CGG | 0.366942 | 6_1:+8404327 | Msa0872810:CDS |
| AGATTCCTCTTGGTCTTCTT+CGG | 0.368327 | 6_1:-8404105 | None:intergenic |
| GTCAAAATCAATTGCTGGTC+AGG | 0.368929 | 6_1:+8403491 | Msa0872810:CDS |
| ACAGGTGACTTGGTTACATC+TGG | 0.379473 | 6_1:-8402751 | None:intergenic |
| CGTTAGCATCTTTGCTGGCT+TGG | 0.379769 | 6_1:-8403070 | None:intergenic |
| GCTTTGGAAGTTGATCTTGA+TGG | 0.380800 | 6_1:-8403555 | None:intergenic |
| TCTTCAACGTTTGCTTTCTC+TGG | 0.385250 | 6_1:-8404365 | None:intergenic |
| GCTGTCGACATCTTACTTGT+TGG | 0.386295 | 6_1:-8403024 | None:intergenic |
| TGATGGAAGTTTGTGTGTAT+TGG | 0.388134 | 6_1:-8403148 | None:intergenic |
| ACATATTGTGAATGAAGTTA+AGG | 0.394229 | 6_1:+8403191 | Msa0872810:CDS |
| GTCTAAGGCATCAGAAATTC+CGG | 0.395900 | 6_1:-8403124 | None:intergenic |
| ACCGAGGTTGATGAAGAAAT+AGG | 0.398487 | 6_1:-8404068 | None:intergenic |
| TCTTGTGGCTCTGTTAGGTA+TGG | 0.401105 | 6_1:-8402926 | None:intergenic |
| CTTCTGCTGCAACTAGTTGA+TGG | 0.403170 | 6_1:+8404624 | Msa0872810:CDS |
| AAAATCAACTTCTGCTAAGA+TGG | 0.403661 | 6_1:+8403398 | Msa0872810:CDS |
| TAAGATGTCGACAGCTGTAC+TGG | 0.412734 | 6_1:+8403032 | Msa0872810:CDS |
| CGACATCTTACTTGTTGGCT+TGG | 0.414022 | 6_1:-8403019 | None:intergenic |
| CTCTTGGTCTTCTTCGGACA+AGG | 0.417196 | 6_1:-8404099 | None:intergenic |
| CATGGAAAATGAGGAGACTT+TGG | 0.422673 | 6_1:+8404187 | Msa0872810:CDS |
| CTTACTTGTTGGCTTGGAAT+CGG | 0.423083 | 6_1:-8403013 | None:intergenic |
| CTTTCTTGTCCTCAATATCC+TGG | 0.425578 | 6_1:-8404475 | None:intergenic |
| ACTCCGTCAAAATCAATTGC+TGG | 0.435017 | 6_1:+8403486 | Msa0872810:CDS |
| TTTGTGTGTATTGGTGTCTA+AGG | 0.437460 | 6_1:-8403139 | None:intergenic |
| AGGCAAGCCAAGAAAGGTTA+AGG | 0.439930 | 6_1:+8404223 | Msa0872810:CDS |
| CTCCGAAATTTAAGCTTCCT+AGG | 0.448595 | 6_1:-8404329 | None:intergenic |
| GCCAAAACTACCAAGACAAC+AGG | 0.453185 | 6_1:+8403576 | Msa0872810:CDS |
| ATATACAACTAGTGAATTTG+AGG | 0.454905 | 6_1:+8404130 | Msa0872810:CDS |
| ACGACCGTTAGCATCTTTGC+TGG | 0.455066 | 6_1:-8403075 | None:intergenic |
| TTGTATATTCAGATTCCTCT+TGG | 0.458877 | 6_1:-8404115 | None:intergenic |
| TCTGCCGGCAAGGCTAGCTC+TGG | 0.458911 | 6_1:+8402793 | Msa0872810:CDS |
| ATGAAGTTGAAGTTCAGAAG+AGG | 0.459456 | 6_1:+8404272 | Msa0872810:CDS |
| TTCTTTGGAGTTGACTTCGA+TGG | 0.469547 | 6_1:-8403360 | None:intergenic |
| CAACACTCTCTTGTGAACTT+TGG | 0.470867 | 6_1:-8402960 | None:intergenic |
| GATCGCCAAGTCCAAAATAT+CGG | 0.473961 | 6_1:+8402990 | Msa0872810:CDS |
| TAACTCAACACTTTCTTCAC+TGG | 0.474258 | 6_1:-8402719 | None:intergenic |
| GGAGCATGCATTTGCTTCAA+AGG | 0.474858 | 6_1:+8402894 | Msa0872810:CDS |
| TGTTAAAGAAATGAAGTTGT+CGG | 0.488086 | 6_1:+8403626 | Msa0872810:CDS |
| TGAAGTTGAAGTTCAGAAGA+GGG | 0.492571 | 6_1:+8404273 | Msa0872810:CDS |
| ATTTCTTTAACATTTAAAGA+AGG | 0.493773 | 6_1:-8403615 | None:intergenic |
| TTTGAGACACCAGGATATTG+AGG | 0.500031 | 6_1:+8404466 | Msa0872810:CDS |
| CAATGAAGTTCCTGTTGTCT+TGG | 0.505670 | 6_1:-8403586 | None:intergenic |
| CAATACTACAAGCAAAGAAA+AGG | 0.505742 | 6_1:+8404439 | Msa0872810:CDS |
| GAAGAGCAAGGTTAAAGCAT+TGG | 0.507524 | 6_1:+8404559 | Msa0872810:CDS |
| TTTGTCCTCAAAACCTTCTG+AGG | 0.507912 | 6_1:-8403715 | None:intergenic |
| ATCGAAGTCAACTCCAAAGA+AGG | 0.513550 | 6_1:+8403362 | Msa0872810:CDS |
| GAATCGGTTGATTCCAAGAC+CGG | 0.519197 | 6_1:+8403105 | Msa0872810:CDS |
| AACGGTCGTACTCAAAGAAT+CGG | 0.523090 | 6_1:+8403089 | Msa0872810:CDS |
| ACGTTGAAGATGACGGCGAA+AGG | 0.526867 | 6_1:+8404378 | Msa0872810:CDS |
| GTCAAAGTGGATTCCCAAGA+AGG | 0.530990 | 6_1:+8403428 | Msa0872810:CDS |
| ACCTATTTCTTCATCAACCT+CGG | 0.533692 | 6_1:+8404067 | Msa0872810:CDS |
| ACACAACAACAGTGAGGTAG+AGG | 0.536871 | 6_1:+8403941 | Msa0872810:CDS |
| CTAAATTCCAGAAAGCATAA+GGG | 0.537264 | 6_1:+8403858 | Msa0872810:CDS |
| ACCTTCTGAGGAACTCATAG+AGG | 0.537772 | 6_1:-8403703 | None:intergenic |
| AAAGAAAGGCAAGCCAAGAA+AGG | 0.539034 | 6_1:+8404217 | Msa0872810:CDS |
| CATCAACTAGTTGCAGCAGA+AGG | 0.543444 | 6_1:-8404623 | None:intergenic |
| GTTCACAAGAGAGTGTTGGC+AGG | 0.544323 | 6_1:+8402965 | Msa0872810:CDS |
| ATCAAAATCAACTTCTGCAA+AGG | 0.544779 | 6_1:+8403329 | Msa0872810:CDS |
| TCCATCAAAATCAGTTGTCA+AGG | 0.544963 | 6_1:+8403164 | Msa0872810:CDS |
| CAAGTAAACTTGTTGAAGCT+AGG | 0.547894 | 6_1:+8404537 | Msa0872810:CDS |
| AGCAAGGTTAAAGCATTGGT+TGG | 0.549179 | 6_1:+8404563 | Msa0872810:CDS |
| AATCGAATGCATGGAAAATG+AGG | 0.550501 | 6_1:+8404178 | Msa0872810:CDS |
| GTATGAATCATCATCATAGC+TGG | 0.550881 | 6_1:-8404027 | None:intergenic |
| TGCGACTTCGGTATGAGTGA+TGG | 0.551613 | 6_1:-8403246 | None:intergenic |
| CAGGTGACTTGGTTACATCT+GGG | 0.551958 | 6_1:-8402750 | None:intergenic |
| AAGAAGGCACTCTGCCGGCA+AGG | 0.567345 | 6_1:+8402783 | Msa0872810:CDS |
| ATTGTTGAATAATGTGATTG+AGG | 0.568995 | 6_1:+8404508 | Msa0872810:CDS |
| AAGAAACAGCGAGATCAAGA+TGG | 0.569669 | 6_1:+8403737 | Msa0872810:CDS |
| CATTATCTCAGAGCTTCCAC+CGG | 0.570323 | 6_1:+8402841 | Msa0872810:CDS |
| CAGGAAGAAAACATCGGTAG+AGG | 0.573059 | 6_1:+8403218 | Msa0872810:CDS |
| GATGGAGAAGTATGCGACTT+CGG | 0.573442 | 6_1:-8403258 | None:intergenic |
| GTCAAAACCGACTCTCAAGA+AGG | 0.588023 | 6_1:+8403524 | Msa0872810:CDS |
| TTCATCATCAACTGATAAGG+AGG | 0.591859 | 6_1:+8403296 | Msa0872810:CDS |
| TCCTCTATGAGTTCCTCAGA+AGG | 0.592693 | 6_1:+8403702 | Msa0872810:CDS |
| AAATAGGTGTGGACAACTGA+GGG | 0.601697 | 6_1:-8404052 | None:intergenic |
| AAAGCAAACGTTGAAGATGA+CGG | 0.605478 | 6_1:+8404371 | Msa0872810:CDS |
| TGTTGAAGCTAGGAAGAGCA+AGG | 0.606594 | 6_1:+8404547 | Msa0872810:CDS |
| AAGCTGTGAAATCGAATGCA+TGG | 0.606916 | 6_1:+8404169 | Msa0872810:CDS |
| TTCACAAGAGAGTGTTGGCA+GGG | 0.607114 | 6_1:+8402966 | Msa0872810:CDS |
| GGTTAAGGATGTTGAAGACA+AGG | 0.611830 | 6_1:+8404238 | Msa0872810:CDS |
| AGATGGAAACTCTGTCAAAG+TGG | 0.612123 | 6_1:+8403415 | Msa0872810:CDS |
| ACTCTTATAAGAGAAGCTCT+CGG | 0.620143 | 6_1:-8403828 | None:intergenic |
| TGAATTCGAATCGTGTCGCA+AGG | 0.620776 | 6_1:+8403667 | Msa0872810:CDS |
| ACTTTGGAAGATGAAAAGAA+AGG | 0.632200 | 6_1:+8404203 | Msa0872810:CDS |
| AAAGTGGATTCCCAAGAAGG+TGG | 0.632882 | 6_1:+8403431 | Msa0872810:CDS |
| CAAAGTTCACAAGAGAGTGT+TGG | 0.633891 | 6_1:+8402961 | Msa0872810:CDS |
| GAAATAGGTGTGGACAACTG+AGG | 0.643340 | 6_1:-8404053 | None:intergenic |
| CAAGCCAGCAAAGATGCTAA+CGG | 0.650109 | 6_1:+8403071 | Msa0872810:CDS |
| GGTTGATGAAGAAATAGGTG+TGG | 0.652125 | 6_1:-8404063 | None:intergenic |
| AAAACCGACTCTCAAGAAGG+TGG | 0.654490 | 6_1:+8403527 | Msa0872810:CDS |
| AGGTGACTTGGTTACATCTG+GGG | 0.663671 | 6_1:-8402749 | None:intergenic |
| AAAATCATGACAGGAACCGG+TGG | 0.667501 | 6_1:-8402857 | None:intergenic |
| GTGGAAGCTCTGAGATAATG+CGG | 0.668722 | 6_1:-8402838 | None:intergenic |
| CTTGTCCGAAGAAGACCAAG+AGG | 0.676569 | 6_1:+8404100 | Msa0872810:CDS |
| TGAATCATCATCATAGCTGG+CGG | 0.683694 | 6_1:-8404024 | None:intergenic |
| TAGGTGTGGACAACTGAGGG+AGG | 0.688644 | 6_1:-8404049 | None:intergenic |
| GGACAAGGATTGAGTAACCG+AGG | 0.690449 | 6_1:-8404084 | None:intergenic |
| GGTTAACAGGAAGAAAACAT+CGG | 0.695692 | 6_1:+8403212 | Msa0872810:CDS |
| GAGGACAAGAAAGATGCACA+AGG | 0.728477 | 6_1:+8404485 | Msa0872810:CDS |
| TGATGAACACAACAACAGTG+AGG | 0.753558 | 6_1:+8403935 | Msa0872810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCTTTAACATTTAAAGA+AGG | - | chr6_1:8403618-8403637 | None:intergenic | 15.0% |
| !! | ATTTCTTTAACATTTAAAGA+AGG | - | chr6_1:8403618-8403637 | None:intergenic | 15.0% |
| !!! | ATAGGTGATATAAGTTTTTT+TGG | - | chr6_1:8403792-8403811 | None:intergenic | 20.0% |
| !!! | ATAGGTGATATAAGTTTTTT+TGG | - | chr6_1:8403792-8403811 | None:intergenic | 20.0% |
| ! | ATATTTGCAAAAATCATGAC+AGG | - | chr6_1:8402869-8402888 | None:intergenic | 25.0% |
| !! | TGTCATGATTTTTGCAAATA+TGG | + | chr6_1:8402868-8402887 | Msa0872810:CDS | 25.0% |
| !! | TGATTTTTGCAAATATGGAA+AGG | + | chr6_1:8402873-8402892 | Msa0872810:CDS | 25.0% |
| ! | ACATATTGTGAATGAAGTTA+AGG | + | chr6_1:8403191-8403210 | Msa0872810:CDS | 25.0% |
| !! | ATTTTCATCATCAACTGATA+AGG | + | chr6_1:8403293-8403312 | Msa0872810:CDS | 25.0% |
| ! | TGTTAAAGAAATGAAGTTGT+CGG | + | chr6_1:8403626-8403645 | Msa0872810:CDS | 25.0% |
| !!! | TGATATAAGTTTTTTTGGAG+CGG | - | chr6_1:8403787-8403806 | None:intergenic | 25.0% |
| ! | ATATACAACTAGTGAATTTG+AGG | + | chr6_1:8404130-8404149 | Msa0872810:CDS | 25.0% |
| ! | AAATTGAGAAAAATACTCCT+AGG | + | chr6_1:8404312-8404331 | Msa0872810:CDS | 25.0% |
| ! | ATTGTTGAATAATGTGATTG+AGG | + | chr6_1:8404508-8404527 | Msa0872810:CDS | 25.0% |
| ! | ATATTTGCAAAAATCATGAC+AGG | - | chr6_1:8402869-8402888 | None:intergenic | 25.0% |
| !! | TGTCATGATTTTTGCAAATA+TGG | + | chr6_1:8402868-8402887 | Msa0872810:CDS | 25.0% |
| !! | TGATTTTTGCAAATATGGAA+AGG | + | chr6_1:8402873-8402892 | Msa0872810:CDS | 25.0% |
| ! | ACATATTGTGAATGAAGTTA+AGG | + | chr6_1:8403191-8403210 | Msa0872810:CDS | 25.0% |
| !! | ATTTTCATCATCAACTGATA+AGG | + | chr6_1:8403293-8403312 | Msa0872810:CDS | 25.0% |
| ! | TGTTAAAGAAATGAAGTTGT+CGG | + | chr6_1:8403626-8403645 | Msa0872810:CDS | 25.0% |
| !!! | TGATATAAGTTTTTTTGGAG+CGG | - | chr6_1:8403787-8403806 | None:intergenic | 25.0% |
| ! | ATATACAACTAGTGAATTTG+AGG | + | chr6_1:8404130-8404149 | Msa0872810:CDS | 25.0% |
| ! | AAATTGAGAAAAATACTCCT+AGG | + | chr6_1:8404312-8404331 | Msa0872810:CDS | 25.0% |
| ! | ATTGTTGAATAATGTGATTG+AGG | + | chr6_1:8404508-8404527 | Msa0872810:CDS | 25.0% |
| !! | TGAAGAAAGTGTTGAGTTAT+CGG | + | chr6_1:8402723-8402742 | Msa0872810:CDS | 30.0% |
| TGAATGAAGTTAAGGTTAAC+AGG | + | chr6_1:8403199-8403218 | Msa0872810:CDS | 30.0% | |
| !! | GAAAATTCTTGACTTGTTGA+TGG | - | chr6_1:8403279-8403298 | None:intergenic | 30.0% |
| ATCAAAATCAACTTCTGCAA+AGG | + | chr6_1:8403329-8403348 | Msa0872810:CDS | 30.0% | |
| !! | TTAGCAGAAGTTGATTTTGA+TGG | - | chr6_1:8403396-8403415 | None:intergenic | 30.0% |
| AAAATCAACTTCTGCTAAGA+TGG | + | chr6_1:8403398-8403417 | Msa0872810:CDS | 30.0% | |
| ! | TTTTGACGGAGTTAATACAT+TGG | - | chr6_1:8403478-8403497 | None:intergenic | 30.0% |
| ! | GGAGATGATAAAGCTTTTAT+AGG | - | chr6_1:8403810-8403829 | None:intergenic | 30.0% |
| ! | TCTAAATTCCAGAAAGCATA+AGG | + | chr6_1:8403857-8403876 | Msa0872810:CDS | 30.0% |
| ! | CTAAATTCCAGAAAGCATAA+GGG | + | chr6_1:8403858-8403877 | Msa0872810:CDS | 30.0% |
| TGAAAATTGTGTCTCATCTT+AGG | + | chr6_1:8403883-8403902 | Msa0872810:CDS | 30.0% | |
| TTGTATATTCAGATTCCTCT+TGG | - | chr6_1:8404118-8404137 | None:intergenic | 30.0% | |
| ! | ACTTTGGAAGATGAAAAGAA+AGG | + | chr6_1:8404203-8404222 | Msa0872810:CDS | 30.0% |
| CAATACTACAAGCAAAGAAA+AGG | + | chr6_1:8404439-8404458 | Msa0872810:CDS | 30.0% | |
| !! | TGAAGAAAGTGTTGAGTTAT+CGG | + | chr6_1:8402723-8402742 | Msa0872810:CDS | 30.0% |
| TGAATGAAGTTAAGGTTAAC+AGG | + | chr6_1:8403199-8403218 | Msa0872810:CDS | 30.0% | |
| !! | GAAAATTCTTGACTTGTTGA+TGG | - | chr6_1:8403279-8403298 | None:intergenic | 30.0% |
| ATCAAAATCAACTTCTGCAA+AGG | + | chr6_1:8403329-8403348 | Msa0872810:CDS | 30.0% | |
| !! | TTAGCAGAAGTTGATTTTGA+TGG | - | chr6_1:8403396-8403415 | None:intergenic | 30.0% |
| AAAATCAACTTCTGCTAAGA+TGG | + | chr6_1:8403398-8403417 | Msa0872810:CDS | 30.0% | |
| ! | TTTTGACGGAGTTAATACAT+TGG | - | chr6_1:8403478-8403497 | None:intergenic | 30.0% |
| ! | GGAGATGATAAAGCTTTTAT+AGG | - | chr6_1:8403810-8403829 | None:intergenic | 30.0% |
| ! | TCTAAATTCCAGAAAGCATA+AGG | + | chr6_1:8403857-8403876 | Msa0872810:CDS | 30.0% |
| ! | CTAAATTCCAGAAAGCATAA+GGG | + | chr6_1:8403858-8403877 | Msa0872810:CDS | 30.0% |
| TGAAAATTGTGTCTCATCTT+AGG | + | chr6_1:8403883-8403902 | Msa0872810:CDS | 30.0% | |
| TTGTATATTCAGATTCCTCT+TGG | - | chr6_1:8404118-8404137 | None:intergenic | 30.0% | |
| ! | ACTTTGGAAGATGAAAAGAA+AGG | + | chr6_1:8404203-8404222 | Msa0872810:CDS | 30.0% |
| CAATACTACAAGCAAAGAAA+AGG | + | chr6_1:8404439-8404458 | Msa0872810:CDS | 30.0% | |
| TAACTCAACACTTTCTTCAC+TGG | - | chr6_1:8402722-8402741 | None:intergenic | 35.0% | |
| !! | TTTTTCAATCACAGGTGACT+TGG | - | chr6_1:8402764-8402783 | None:intergenic | 35.0% |
| CACCTGTGATTGAAAAAAGA+AGG | + | chr6_1:8402767-8402786 | Msa0872810:CDS | 35.0% | |
| !!! | TGCCTTCTTTTTTCAATCAC+AGG | - | chr6_1:8402772-8402791 | None:intergenic | 35.0% |
| ! | TTTGTGTGTATTGGTGTCTA+AGG | - | chr6_1:8403142-8403161 | None:intergenic | 35.0% |
| TGATGGAAGTTTGTGTGTAT+TGG | - | chr6_1:8403151-8403170 | None:intergenic | 35.0% | |
| TCCATCAAAATCAGTTGTCA+AGG | + | chr6_1:8403164-8403183 | Msa0872810:CDS | 35.0% | |
| !! | TCCTTGACAACTGATTTTGA+TGG | - | chr6_1:8403168-8403187 | None:intergenic | 35.0% |
| GGTTAACAGGAAGAAAACAT+CGG | + | chr6_1:8403212-8403231 | Msa0872810:CDS | 35.0% | |
| TTCATCATCAACTGATAAGG+AGG | + | chr6_1:8403296-8403315 | Msa0872810:CDS | 35.0% | |
| ! | GATGTATTTTCCACCTTCTT+GGG | - | chr6_1:8403444-8403463 | None:intergenic | 35.0% |
| ! | TGATGTATTTTCCACCTTCT+TGG | - | chr6_1:8403445-8403464 | None:intergenic | 35.0% |
| !! | TGACCAGCAATTGATTTTGA+CGG | - | chr6_1:8403492-8403511 | None:intergenic | 35.0% |
| !!! | AAGTTTTTTTGGAGCGGTTT+TGG | - | chr6_1:8403781-8403800 | None:intergenic | 35.0% |
| ACTCTTATAAGAGAAGCTCT+CGG | - | chr6_1:8403831-8403850 | None:intergenic | 35.0% | |
| GACATTGTATGTCGTCAATA+TGG | + | chr6_1:8403968-8403987 | Msa0872810:CDS | 35.0% | |
| GTATGAATCATCATCATAGC+TGG | - | chr6_1:8404030-8404049 | None:intergenic | 35.0% | |
| ! | ACCTATTTCTTCATCAACCT+CGG | + | chr6_1:8404067-8404086 | Msa0872810:CDS | 35.0% |
| AATCGAATGCATGGAAAATG+AGG | + | chr6_1:8404178-8404197 | Msa0872810:CDS | 35.0% | |
| TCAACATCCTTAACCTTTCT+TGG | - | chr6_1:8404233-8404252 | None:intergenic | 35.0% | |
| ATGAAGTTGAAGTTCAGAAG+AGG | + | chr6_1:8404272-8404291 | Msa0872810:CDS | 35.0% | |
| TGAAGTTGAAGTTCAGAAGA+GGG | + | chr6_1:8404273-8404292 | Msa0872810:CDS | 35.0% | |
| CTCCTAGGAAGCTTAAATTT+CGG | + | chr6_1:8404327-8404346 | Msa0872810:CDS | 35.0% | |
| AAAGCAAACGTTGAAGATGA+CGG | + | chr6_1:8404371-8404390 | Msa0872810:CDS | 35.0% | |
| !! | CAAGTAAACTTGTTGAAGCT+AGG | + | chr6_1:8404537-8404556 | Msa0872810:CDS | 35.0% |
| TAACTCAACACTTTCTTCAC+TGG | - | chr6_1:8402722-8402741 | None:intergenic | 35.0% | |
| !! | TTTTTCAATCACAGGTGACT+TGG | - | chr6_1:8402764-8402783 | None:intergenic | 35.0% |
| CACCTGTGATTGAAAAAAGA+AGG | + | chr6_1:8402767-8402786 | Msa0872810:CDS | 35.0% | |
| !!! | TGCCTTCTTTTTTCAATCAC+AGG | - | chr6_1:8402772-8402791 | None:intergenic | 35.0% |
| ! | TTTGTGTGTATTGGTGTCTA+AGG | - | chr6_1:8403142-8403161 | None:intergenic | 35.0% |
| TGATGGAAGTTTGTGTGTAT+TGG | - | chr6_1:8403151-8403170 | None:intergenic | 35.0% | |
| TCCATCAAAATCAGTTGTCA+AGG | + | chr6_1:8403164-8403183 | Msa0872810:CDS | 35.0% | |
| !! | TCCTTGACAACTGATTTTGA+TGG | - | chr6_1:8403168-8403187 | None:intergenic | 35.0% |
| GGTTAACAGGAAGAAAACAT+CGG | + | chr6_1:8403212-8403231 | Msa0872810:CDS | 35.0% | |
| TTCATCATCAACTGATAAGG+AGG | + | chr6_1:8403296-8403315 | Msa0872810:CDS | 35.0% | |
| ! | GATGTATTTTCCACCTTCTT+GGG | - | chr6_1:8403444-8403463 | None:intergenic | 35.0% |
| ! | TGATGTATTTTCCACCTTCT+TGG | - | chr6_1:8403445-8403464 | None:intergenic | 35.0% |
| !! | TGACCAGCAATTGATTTTGA+CGG | - | chr6_1:8403492-8403511 | None:intergenic | 35.0% |
| !!! | AAGTTTTTTTGGAGCGGTTT+TGG | - | chr6_1:8403781-8403800 | None:intergenic | 35.0% |
| ACTCTTATAAGAGAAGCTCT+CGG | - | chr6_1:8403831-8403850 | None:intergenic | 35.0% | |
| GACATTGTATGTCGTCAATA+TGG | + | chr6_1:8403968-8403987 | Msa0872810:CDS | 35.0% | |
| GTATGAATCATCATCATAGC+TGG | - | chr6_1:8404030-8404049 | None:intergenic | 35.0% | |
| ! | ACCTATTTCTTCATCAACCT+CGG | + | chr6_1:8404067-8404086 | Msa0872810:CDS | 35.0% |
| AATCGAATGCATGGAAAATG+AGG | + | chr6_1:8404178-8404197 | Msa0872810:CDS | 35.0% | |
| TCAACATCCTTAACCTTTCT+TGG | - | chr6_1:8404233-8404252 | None:intergenic | 35.0% | |
| ATGAAGTTGAAGTTCAGAAG+AGG | + | chr6_1:8404272-8404291 | Msa0872810:CDS | 35.0% | |
| TGAAGTTGAAGTTCAGAAGA+GGG | + | chr6_1:8404273-8404292 | Msa0872810:CDS | 35.0% | |
| CTCCTAGGAAGCTTAAATTT+CGG | + | chr6_1:8404327-8404346 | Msa0872810:CDS | 35.0% | |
| AAAGCAAACGTTGAAGATGA+CGG | + | chr6_1:8404371-8404390 | Msa0872810:CDS | 35.0% | |
| !! | CAAGTAAACTTGTTGAAGCT+AGG | + | chr6_1:8404537-8404556 | Msa0872810:CDS | 35.0% |
| GCAAAAATCATGACAGGAAC+CGG | - | chr6_1:8402863-8402882 | None:intergenic | 40.0% | |
| !! | TGTTTTCTTGTGGCTCTGTT+AGG | - | chr6_1:8402934-8402953 | None:intergenic | 40.0% |
| !! | TTGGTGAAGCTGTTTTCTTG+TGG | - | chr6_1:8402944-8402963 | None:intergenic | 40.0% |
| CAACACTCTCTTGTGAACTT+TGG | - | chr6_1:8402963-8402982 | None:intergenic | 40.0% | |
| ! | CAAAGTTCACAAGAGAGTGT+TGG | + | chr6_1:8402961-8402980 | Msa0872810:CDS | 40.0% |
| GATCGCCAAGTCCAAAATAT+CGG | + | chr6_1:8402990-8403009 | Msa0872810:CDS | 40.0% | |
| !! | CTTACTTGTTGGCTTGGAAT+CGG | - | chr6_1:8403016-8403035 | None:intergenic | 40.0% |
| AACGGTCGTACTCAAAGAAT+CGG | + | chr6_1:8403089-8403108 | Msa0872810:CDS | 40.0% | |
| ! | GTCTAAGGCATCAGAAATTC+CGG | - | chr6_1:8403127-8403146 | None:intergenic | 40.0% |
| !! | TTCTTTGGAGTTGACTTCGA+TGG | - | chr6_1:8403363-8403382 | None:intergenic | 40.0% |
| ATCGAAGTCAACTCCAAAGA+AGG | + | chr6_1:8403362-8403381 | Msa0872810:CDS | 40.0% | |
| ! | GATGGAGTTTTCACCTTCTT+TGG | - | chr6_1:8403378-8403397 | None:intergenic | 40.0% |
| AGATGGAAACTCTGTCAAAG+TGG | + | chr6_1:8403415-8403434 | Msa0872810:CDS | 40.0% | |
| ACTCCGTCAAAATCAATTGC+TGG | + | chr6_1:8403486-8403505 | Msa0872810:CDS | 40.0% | |
| GTCAAAATCAATTGCTGGTC+AGG | + | chr6_1:8403491-8403510 | Msa0872810:CDS | 40.0% | |
| ! | TTTTCCACCTTCTTGAGAGT+CGG | - | chr6_1:8403534-8403553 | None:intergenic | 40.0% |
| !! | GCTTTGGAAGTTGATCTTGA+TGG | - | chr6_1:8403558-8403577 | None:intergenic | 40.0% |
| !!! | TGTCTTGGTAGTTTTGGCTT+TGG | - | chr6_1:8403574-8403593 | None:intergenic | 40.0% |
| !! | TCCTGTTGTCTTGGTAGTTT+TGG | - | chr6_1:8403580-8403599 | None:intergenic | 40.0% |
| CAATGAAGTTCCTGTTGTCT+TGG | - | chr6_1:8403589-8403608 | None:intergenic | 40.0% | |
| TTTGTCCTCAAAACCTTCTG+AGG | - | chr6_1:8403718-8403737 | None:intergenic | 40.0% | |
| AAGAAACAGCGAGATCAAGA+TGG | + | chr6_1:8403737-8403756 | Msa0872810:CDS | 40.0% | |
| !!! | TTTTTTGGAGCGGTTTTGGA+GGG | - | chr6_1:8403777-8403796 | None:intergenic | 40.0% |
| !!! | TTTTTTTGGAGCGGTTTTGG+AGG | - | chr6_1:8403778-8403797 | None:intergenic | 40.0% |
| TTTCAAGCCCTTATGCTTTC+TGG | - | chr6_1:8403868-8403887 | None:intergenic | 40.0% | |
| TGATGAACACAACAACAGTG+AGG | + | chr6_1:8403935-8403954 | Msa0872810:CDS | 40.0% | |
| TGAATCATCATCATAGCTGG+CGG | - | chr6_1:8404027-8404046 | None:intergenic | 40.0% | |
| AAATAGGTGTGGACAACTGA+GGG | - | chr6_1:8404055-8404074 | None:intergenic | 40.0% | |
| !! | GGTTGATGAAGAAATAGGTG+TGG | - | chr6_1:8404066-8404085 | None:intergenic | 40.0% |
| !! | ACCGAGGTTGATGAAGAAAT+AGG | - | chr6_1:8404071-8404090 | None:intergenic | 40.0% |
| ! | AGATTCCTCTTGGTCTTCTT+CGG | - | chr6_1:8404108-8404127 | None:intergenic | 40.0% |
| AAGCTGTGAAATCGAATGCA+TGG | + | chr6_1:8404169-8404188 | Msa0872810:CDS | 40.0% | |
| CATGGAAAATGAGGAGACTT+TGG | + | chr6_1:8404187-8404206 | Msa0872810:CDS | 40.0% | |
| AAAGAAAGGCAAGCCAAGAA+AGG | + | chr6_1:8404217-8404236 | Msa0872810:CDS | 40.0% | |
| GGTTAAGGATGTTGAAGACA+AGG | + | chr6_1:8404238-8404257 | Msa0872810:CDS | 40.0% | |
| CTCCGAAATTTAAGCTTCCT+AGG | - | chr6_1:8404332-8404351 | None:intergenic | 40.0% | |
| TCTTCAACGTTTGCTTTCTC+TGG | - | chr6_1:8404368-8404387 | None:intergenic | 40.0% | |
| !!! | AAAGGTTGTTTTGAGACACC+AGG | + | chr6_1:8404457-8404476 | Msa0872810:CDS | 40.0% |
| ! | TTTGAGACACCAGGATATTG+AGG | + | chr6_1:8404466-8404485 | Msa0872810:CDS | 40.0% |
| CTTTCTTGTCCTCAATATCC+TGG | - | chr6_1:8404478-8404497 | None:intergenic | 40.0% | |
| GAAGAGCAAGGTTAAAGCAT+TGG | + | chr6_1:8404559-8404578 | Msa0872810:CDS | 40.0% | |
| !! | AGCAAGGTTAAAGCATTGGT+TGG | + | chr6_1:8404563-8404582 | Msa0872810:CDS | 40.0% |
| GCAAAAATCATGACAGGAAC+CGG | - | chr6_1:8402863-8402882 | None:intergenic | 40.0% | |
| !! | TGTTTTCTTGTGGCTCTGTT+AGG | - | chr6_1:8402934-8402953 | None:intergenic | 40.0% |
| !! | TTGGTGAAGCTGTTTTCTTG+TGG | - | chr6_1:8402944-8402963 | None:intergenic | 40.0% |
| CAACACTCTCTTGTGAACTT+TGG | - | chr6_1:8402963-8402982 | None:intergenic | 40.0% | |
| ! | CAAAGTTCACAAGAGAGTGT+TGG | + | chr6_1:8402961-8402980 | Msa0872810:CDS | 40.0% |
| GATCGCCAAGTCCAAAATAT+CGG | + | chr6_1:8402990-8403009 | Msa0872810:CDS | 40.0% | |
| !! | CTTACTTGTTGGCTTGGAAT+CGG | - | chr6_1:8403016-8403035 | None:intergenic | 40.0% |
| AACGGTCGTACTCAAAGAAT+CGG | + | chr6_1:8403089-8403108 | Msa0872810:CDS | 40.0% | |
| ! | GTCTAAGGCATCAGAAATTC+CGG | - | chr6_1:8403127-8403146 | None:intergenic | 40.0% |
| !! | TTCTTTGGAGTTGACTTCGA+TGG | - | chr6_1:8403363-8403382 | None:intergenic | 40.0% |
| ATCGAAGTCAACTCCAAAGA+AGG | + | chr6_1:8403362-8403381 | Msa0872810:CDS | 40.0% | |
| ! | GATGGAGTTTTCACCTTCTT+TGG | - | chr6_1:8403378-8403397 | None:intergenic | 40.0% |
| AGATGGAAACTCTGTCAAAG+TGG | + | chr6_1:8403415-8403434 | Msa0872810:CDS | 40.0% | |
| ACTCCGTCAAAATCAATTGC+TGG | + | chr6_1:8403486-8403505 | Msa0872810:CDS | 40.0% | |
| GTCAAAATCAATTGCTGGTC+AGG | + | chr6_1:8403491-8403510 | Msa0872810:CDS | 40.0% | |
| ! | TTTTCCACCTTCTTGAGAGT+CGG | - | chr6_1:8403534-8403553 | None:intergenic | 40.0% |
| !! | GCTTTGGAAGTTGATCTTGA+TGG | - | chr6_1:8403558-8403577 | None:intergenic | 40.0% |
| !!! | TGTCTTGGTAGTTTTGGCTT+TGG | - | chr6_1:8403574-8403593 | None:intergenic | 40.0% |
| !! | TCCTGTTGTCTTGGTAGTTT+TGG | - | chr6_1:8403580-8403599 | None:intergenic | 40.0% |
| CAATGAAGTTCCTGTTGTCT+TGG | - | chr6_1:8403589-8403608 | None:intergenic | 40.0% | |
| TTTGTCCTCAAAACCTTCTG+AGG | - | chr6_1:8403718-8403737 | None:intergenic | 40.0% | |
| AAGAAACAGCGAGATCAAGA+TGG | + | chr6_1:8403737-8403756 | Msa0872810:CDS | 40.0% | |
| !!! | TTTTTTGGAGCGGTTTTGGA+GGG | - | chr6_1:8403777-8403796 | None:intergenic | 40.0% |
| !!! | TTTTTTTGGAGCGGTTTTGG+AGG | - | chr6_1:8403778-8403797 | None:intergenic | 40.0% |
| TTTCAAGCCCTTATGCTTTC+TGG | - | chr6_1:8403868-8403887 | None:intergenic | 40.0% | |
| TGATGAACACAACAACAGTG+AGG | + | chr6_1:8403935-8403954 | Msa0872810:CDS | 40.0% | |
| TGAATCATCATCATAGCTGG+CGG | - | chr6_1:8404027-8404046 | None:intergenic | 40.0% | |
| AAATAGGTGTGGACAACTGA+GGG | - | chr6_1:8404055-8404074 | None:intergenic | 40.0% | |
| !! | GGTTGATGAAGAAATAGGTG+TGG | - | chr6_1:8404066-8404085 | None:intergenic | 40.0% |
| !! | ACCGAGGTTGATGAAGAAAT+AGG | - | chr6_1:8404071-8404090 | None:intergenic | 40.0% |
| ! | AGATTCCTCTTGGTCTTCTT+CGG | - | chr6_1:8404108-8404127 | None:intergenic | 40.0% |
| AAGCTGTGAAATCGAATGCA+TGG | + | chr6_1:8404169-8404188 | Msa0872810:CDS | 40.0% | |
| CATGGAAAATGAGGAGACTT+TGG | + | chr6_1:8404187-8404206 | Msa0872810:CDS | 40.0% | |
| AAAGAAAGGCAAGCCAAGAA+AGG | + | chr6_1:8404217-8404236 | Msa0872810:CDS | 40.0% | |
| GGTTAAGGATGTTGAAGACA+AGG | + | chr6_1:8404238-8404257 | Msa0872810:CDS | 40.0% | |
| CTCCGAAATTTAAGCTTCCT+AGG | - | chr6_1:8404332-8404351 | None:intergenic | 40.0% | |
| TCTTCAACGTTTGCTTTCTC+TGG | - | chr6_1:8404368-8404387 | None:intergenic | 40.0% | |
| !!! | AAAGGTTGTTTTGAGACACC+AGG | + | chr6_1:8404457-8404476 | Msa0872810:CDS | 40.0% |
| ! | TTTGAGACACCAGGATATTG+AGG | + | chr6_1:8404466-8404485 | Msa0872810:CDS | 40.0% |
| CTTTCTTGTCCTCAATATCC+TGG | - | chr6_1:8404478-8404497 | None:intergenic | 40.0% | |
| GAAGAGCAAGGTTAAAGCAT+TGG | + | chr6_1:8404559-8404578 | Msa0872810:CDS | 40.0% | |
| !! | AGCAAGGTTAAAGCATTGGT+TGG | + | chr6_1:8404563-8404582 | Msa0872810:CDS | 40.0% |
| !! | AGGTGACTTGGTTACATCTG+GGG | - | chr6_1:8402752-8402771 | None:intergenic | 45.0% |
| !! | CAGGTGACTTGGTTACATCT+GGG | - | chr6_1:8402753-8402772 | None:intergenic | 45.0% |
| !! | ACAGGTGACTTGGTTACATC+TGG | - | chr6_1:8402754-8402773 | None:intergenic | 45.0% |
| !! | GAAAAAAGAAGGCACTCTGC+CGG | + | chr6_1:8402778-8402797 | Msa0872810:CDS | 45.0% |
| !! | GTGGAAGCTCTGAGATAATG+CGG | - | chr6_1:8402841-8402860 | None:intergenic | 45.0% |
| CATTATCTCAGAGCTTCCAC+CGG | + | chr6_1:8402841-8402860 | Msa0872810:CDS | 45.0% | |
| AAAATCATGACAGGAACCGG+TGG | - | chr6_1:8402860-8402879 | None:intergenic | 45.0% | |
| GGAGCATGCATTTGCTTCAA+AGG | + | chr6_1:8402894-8402913 | Msa0872810:CDS | 45.0% | |
| ! | TCTTGTGGCTCTGTTAGGTA+TGG | - | chr6_1:8402929-8402948 | None:intergenic | 45.0% |
| !! | TTCACAAGAGAGTGTTGGCA+GGG | + | chr6_1:8402966-8402985 | Msa0872810:CDS | 45.0% |
| !! | ATCGGCCGATATTTTGGACT+TGG | - | chr6_1:8402998-8403017 | None:intergenic | 45.0% |
| ! | CTTGGAATCGGCCGATATTT+TGG | - | chr6_1:8403004-8403023 | None:intergenic | 45.0% |
| ! | CGACATCTTACTTGTTGGCT+TGG | - | chr6_1:8403022-8403041 | None:intergenic | 45.0% |
| GCTGTCGACATCTTACTTGT+TGG | - | chr6_1:8403027-8403046 | None:intergenic | 45.0% | |
| TAAGATGTCGACAGCTGTAC+TGG | + | chr6_1:8403032-8403051 | Msa0872810:CDS | 45.0% | |
| CAAGCCAGCAAAGATGCTAA+CGG | + | chr6_1:8403071-8403090 | Msa0872810:CDS | 45.0% | |
| ! | GAATCGGTTGATTCCAAGAC+CGG | + | chr6_1:8403105-8403124 | Msa0872810:CDS | 45.0% |
| CAGGAAGAAAACATCGGTAG+AGG | + | chr6_1:8403218-8403237 | Msa0872810:CDS | 45.0% | |
| ! | GATGGAGAAGTATGCGACTT+CGG | - | chr6_1:8403261-8403280 | None:intergenic | 45.0% |
| ! | GTCAAAGTGGATTCCCAAGA+AGG | + | chr6_1:8403428-8403447 | Msa0872810:CDS | 45.0% |
| ! | AAAGTGGATTCCCAAGAAGG+TGG | + | chr6_1:8403431-8403450 | Msa0872810:CDS | 45.0% |
| ! | GTCAAAACCGACTCTCAAGA+AGG | + | chr6_1:8403524-8403543 | Msa0872810:CDS | 45.0% |
| ! | AAAACCGACTCTCAAGAAGG+TGG | + | chr6_1:8403527-8403546 | Msa0872810:CDS | 45.0% |
| GCCAAAACTACCAAGACAAC+AGG | + | chr6_1:8403576-8403595 | Msa0872810:CDS | 45.0% | |
| TGAATTCGAATCGTGTCGCA+AGG | + | chr6_1:8403667-8403686 | Msa0872810:CDS | 45.0% | |
| TCCTCTATGAGTTCCTCAGA+AGG | + | chr6_1:8403702-8403721 | Msa0872810:CDS | 45.0% | |
| ! | ACCTTCTGAGGAACTCATAG+AGG | - | chr6_1:8403706-8403725 | None:intergenic | 45.0% |
| ! | GAGTTCCTCAGAAGGTTTTG+AGG | + | chr6_1:8403710-8403729 | Msa0872810:CDS | 45.0% |
| !!! | TTTTTGGAGCGGTTTTGGAG+GGG | - | chr6_1:8403776-8403795 | None:intergenic | 45.0% |
| ACACAACAACAGTGAGGTAG+AGG | + | chr6_1:8403941-8403960 | Msa0872810:CDS | 45.0% | |
| GAAATAGGTGTGGACAACTG+AGG | - | chr6_1:8404056-8404075 | None:intergenic | 45.0% | |
| AGGCAAGCCAAGAAAGGTTA+AGG | + | chr6_1:8404223-8404242 | Msa0872810:CDS | 45.0% | |
| GAGGACAAGAAAGATGCACA+AGG | + | chr6_1:8404485-8404504 | Msa0872810:CDS | 45.0% | |
| TGTTGAAGCTAGGAAGAGCA+AGG | + | chr6_1:8404547-8404566 | Msa0872810:CDS | 45.0% | |
| !! | AGGTGACTTGGTTACATCTG+GGG | - | chr6_1:8402752-8402771 | None:intergenic | 45.0% |
| !! | CAGGTGACTTGGTTACATCT+GGG | - | chr6_1:8402753-8402772 | None:intergenic | 45.0% |
| !! | ACAGGTGACTTGGTTACATC+TGG | - | chr6_1:8402754-8402773 | None:intergenic | 45.0% |
| !! | GAAAAAAGAAGGCACTCTGC+CGG | + | chr6_1:8402778-8402797 | Msa0872810:CDS | 45.0% |
| !! | GTGGAAGCTCTGAGATAATG+CGG | - | chr6_1:8402841-8402860 | None:intergenic | 45.0% |
| CATTATCTCAGAGCTTCCAC+CGG | + | chr6_1:8402841-8402860 | Msa0872810:CDS | 45.0% | |
| AAAATCATGACAGGAACCGG+TGG | - | chr6_1:8402860-8402879 | None:intergenic | 45.0% | |
| GGAGCATGCATTTGCTTCAA+AGG | + | chr6_1:8402894-8402913 | Msa0872810:CDS | 45.0% | |
| ! | TCTTGTGGCTCTGTTAGGTA+TGG | - | chr6_1:8402929-8402948 | None:intergenic | 45.0% |
| !! | TTCACAAGAGAGTGTTGGCA+GGG | + | chr6_1:8402966-8402985 | Msa0872810:CDS | 45.0% |
| !! | ATCGGCCGATATTTTGGACT+TGG | - | chr6_1:8402998-8403017 | None:intergenic | 45.0% |
| ! | CTTGGAATCGGCCGATATTT+TGG | - | chr6_1:8403004-8403023 | None:intergenic | 45.0% |
| ! | CGACATCTTACTTGTTGGCT+TGG | - | chr6_1:8403022-8403041 | None:intergenic | 45.0% |
| GCTGTCGACATCTTACTTGT+TGG | - | chr6_1:8403027-8403046 | None:intergenic | 45.0% | |
| TAAGATGTCGACAGCTGTAC+TGG | + | chr6_1:8403032-8403051 | Msa0872810:CDS | 45.0% | |
| CAAGCCAGCAAAGATGCTAA+CGG | + | chr6_1:8403071-8403090 | Msa0872810:CDS | 45.0% | |
| ! | GAATCGGTTGATTCCAAGAC+CGG | + | chr6_1:8403105-8403124 | Msa0872810:CDS | 45.0% |
| CAGGAAGAAAACATCGGTAG+AGG | + | chr6_1:8403218-8403237 | Msa0872810:CDS | 45.0% | |
| ! | GATGGAGAAGTATGCGACTT+CGG | - | chr6_1:8403261-8403280 | None:intergenic | 45.0% |
| ! | GTCAAAGTGGATTCCCAAGA+AGG | + | chr6_1:8403428-8403447 | Msa0872810:CDS | 45.0% |
| ! | AAAGTGGATTCCCAAGAAGG+TGG | + | chr6_1:8403431-8403450 | Msa0872810:CDS | 45.0% |
| ! | GTCAAAACCGACTCTCAAGA+AGG | + | chr6_1:8403524-8403543 | Msa0872810:CDS | 45.0% |
| ! | AAAACCGACTCTCAAGAAGG+TGG | + | chr6_1:8403527-8403546 | Msa0872810:CDS | 45.0% |
| GCCAAAACTACCAAGACAAC+AGG | + | chr6_1:8403576-8403595 | Msa0872810:CDS | 45.0% | |
| TGAATTCGAATCGTGTCGCA+AGG | + | chr6_1:8403667-8403686 | Msa0872810:CDS | 45.0% | |
| TCCTCTATGAGTTCCTCAGA+AGG | + | chr6_1:8403702-8403721 | Msa0872810:CDS | 45.0% | |
| ! | ACCTTCTGAGGAACTCATAG+AGG | - | chr6_1:8403706-8403725 | None:intergenic | 45.0% |
| ! | GAGTTCCTCAGAAGGTTTTG+AGG | + | chr6_1:8403710-8403729 | Msa0872810:CDS | 45.0% |
| !!! | TTTTTGGAGCGGTTTTGGAG+GGG | - | chr6_1:8403776-8403795 | None:intergenic | 45.0% |
| ACACAACAACAGTGAGGTAG+AGG | + | chr6_1:8403941-8403960 | Msa0872810:CDS | 45.0% | |
| GAAATAGGTGTGGACAACTG+AGG | - | chr6_1:8404056-8404075 | None:intergenic | 45.0% | |
| AGGCAAGCCAAGAAAGGTTA+AGG | + | chr6_1:8404223-8404242 | Msa0872810:CDS | 45.0% | |
| GAGGACAAGAAAGATGCACA+AGG | + | chr6_1:8404485-8404504 | Msa0872810:CDS | 45.0% | |
| TGTTGAAGCTAGGAAGAGCA+AGG | + | chr6_1:8404547-8404566 | Msa0872810:CDS | 45.0% | |
| !!! | TTTTCCAGAGCTAGCCTTGC+CGG | - | chr6_1:8402800-8402819 | None:intergenic | 50.0% |
| !! | GCAAGGCTAGCTCTGGAAAA+AGG | + | chr6_1:8402800-8402819 | Msa0872810:CDS | 50.0% |
| !! | GTTCACAAGAGAGTGTTGGC+AGG | + | chr6_1:8402965-8402984 | Msa0872810:CDS | 50.0% |
| ! | CGTTAGCATCTTTGCTGGCT+TGG | - | chr6_1:8403073-8403092 | None:intergenic | 50.0% |
| ACGACCGTTAGCATCTTTGC+TGG | - | chr6_1:8403078-8403097 | None:intergenic | 50.0% | |
| GGCATCAGAAATTCCGGTCT+TGG | - | chr6_1:8403121-8403140 | None:intergenic | 50.0% | |
| TGCGACTTCGGTATGAGTGA+TGG | - | chr6_1:8403249-8403268 | None:intergenic | 50.0% | |
| !!! | TTTTGGAGCGGTTTTGGAGG+GGG | - | chr6_1:8403775-8403794 | None:intergenic | 50.0% |
| GGACAAGGATTGAGTAACCG+AGG | - | chr6_1:8404087-8404106 | None:intergenic | 50.0% | |
| ! | CTCTTGGTCTTCTTCGGACA+AGG | - | chr6_1:8404102-8404121 | None:intergenic | 50.0% |
| CTTGTCCGAAGAAGACCAAG+AGG | + | chr6_1:8404100-8404119 | Msa0872810:CDS | 50.0% | |
| ! | ACGTTGAAGATGACGGCGAA+AGG | + | chr6_1:8404378-8404397 | Msa0872810:CDS | 50.0% |
| !!! | TTTTCCAGAGCTAGCCTTGC+CGG | - | chr6_1:8402800-8402819 | None:intergenic | 50.0% |
| !! | GCAAGGCTAGCTCTGGAAAA+AGG | + | chr6_1:8402800-8402819 | Msa0872810:CDS | 50.0% |
| !! | GTTCACAAGAGAGTGTTGGC+AGG | + | chr6_1:8402965-8402984 | Msa0872810:CDS | 50.0% |
| ! | CGTTAGCATCTTTGCTGGCT+TGG | - | chr6_1:8403073-8403092 | None:intergenic | 50.0% |
| ACGACCGTTAGCATCTTTGC+TGG | - | chr6_1:8403078-8403097 | None:intergenic | 50.0% | |
| GGCATCAGAAATTCCGGTCT+TGG | - | chr6_1:8403121-8403140 | None:intergenic | 50.0% | |
| TGCGACTTCGGTATGAGTGA+TGG | - | chr6_1:8403249-8403268 | None:intergenic | 50.0% | |
| !!! | TTTTGGAGCGGTTTTGGAGG+GGG | - | chr6_1:8403775-8403794 | None:intergenic | 50.0% |
| GGACAAGGATTGAGTAACCG+AGG | - | chr6_1:8404087-8404106 | None:intergenic | 50.0% | |
| ! | CTCTTGGTCTTCTTCGGACA+AGG | - | chr6_1:8404102-8404121 | None:intergenic | 50.0% |
| CTTGTCCGAAGAAGACCAAG+AGG | + | chr6_1:8404100-8404119 | Msa0872810:CDS | 50.0% | |
| ! | ACGTTGAAGATGACGGCGAA+AGG | + | chr6_1:8404378-8404397 | Msa0872810:CDS | 50.0% |
| TAGGTGTGGACAACTGAGGG+AGG | - | chr6_1:8404052-8404071 | None:intergenic | 55.0% | |
| TAGGTGTGGACAACTGAGGG+AGG | - | chr6_1:8404052-8404071 | None:intergenic | 55.0% | |
| !! | AAGAAGGCACTCTGCCGGCA+AGG | + | chr6_1:8402783-8402802 | Msa0872810:CDS | 60.0% |
| !! | AAGAAGGCACTCTGCCGGCA+AGG | + | chr6_1:8402783-8402802 | Msa0872810:CDS | 60.0% |
| ! | TCTGCCGGCAAGGCTAGCTC+TGG | + | chr6_1:8402793-8402812 | Msa0872810:CDS | 65.0% |
| ! | TCTGCCGGCAAGGCTAGCTC+TGG | + | chr6_1:8402793-8402812 | Msa0872810:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 8402715 | 8404643 | 8402715 | ID=Msa0872810;Name=Msa0872810 |
| chr6_1 | mRNA | 8402715 | 8404643 | 8402715 | ID=Msa0872810-mRNA-1;Parent=Msa0872810;Name=Msa0872810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|-1|0|1|-1|1|1|0|642 |
| chr6_1 | exon | 8402715 | 8404643 | 8402715 | ID=Msa0872810-mRNA-1:exon:2564;Parent=Msa0872810-mRNA-1 |
| chr6_1 | CDS | 8402715 | 8404643 | 8402715 | ID=Msa0872810-mRNA-1:cds;Parent=Msa0872810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
