AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0160960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160960 MtrunA17_Chr1g0174281 99.552 223 1 0 1 223 1 223 2.15e-168 462
Msa0160960 MtrunA17_Chr7g0231131 82.883 222 35 2 1 222 1 219 5.38e-134 375
Msa0160960 MtrunA17_Chr3g0123821 72.936 218 57 2 5 222 6 221 4.58e-116 330
Msa0160960 MtrunA17_Chr8g0381841 70.642 218 63 1 5 222 7 223 7.13e-115 327
Msa0160960 MtrunA17_Chr4g0046261 61.905 210 75 2 13 222 11 215 2.46e-94 275
Msa0160960 MtrunA17_Chr2g0283131 62.381 210 74 2 13 222 11 215 2.87e-94 275
Msa0160960 MtrunA17_Chr8g0346421 66.832 202 60 2 7 207 18 213 6.26e-94 274
Msa0160960 MtrunA17_Chr4g0040781 61.905 210 75 2 13 222 11 215 2.83e-93 272
Msa0160960 MtrunA17_Chr2g0315551 61.429 210 76 3 13 222 11 215 4.78e-93 271
Msa0160960 MtrunA17_Chr4g0032201 62.617 214 74 3 9 222 6 213 1.52e-92 270
Msa0160960 MtrunA17_Chr2g0276941 61.033 213 79 2 10 222 10 218 4.32e-92 269
Msa0160960 MtrunA17_Chr2g0319951 59.070 215 84 2 9 223 7 217 5.19e-92 269
Msa0160960 MtrunA17_Chr3g0112681 60.664 211 78 2 13 223 10 215 7.07e-91 266
Msa0160960 MtrunA17_Chr7g0275991 60.465 215 79 2 10 221 15 226 2.57e-90 265
Msa0160960 MtrunA17_Chr2g0325091 58.065 217 85 2 6 222 2 212 1.28e-89 263
Msa0160960 MtrunA17_Chr8g0351861 54.867 226 98 3 1 222 1 226 5.13e-89 261
Msa0160960 MtrunA17_Chr7g0214241 55.399 213 86 3 14 223 14 220 1.77e-83 247
Msa0160960 MtrunA17_Chr1g0189361 55.399 213 90 3 13 222 12 222 4.07e-82 244
Msa0160960 MtrunA17_Chr7g0234201 53.589 209 91 1 14 222 12 214 1.09e-77 232
Msa0160960 MtrunA17_Chr8g0392931 47.907 215 108 2 8 222 7 217 7.62e-70 213
Msa0160960 MtrunA17_Chr6g0482721 47.907 215 107 2 8 222 5 214 1.22e-69 212
Msa0160960 MtrunA17_Chr2g0290891 50.000 178 89 0 14 191 5 182 8.58e-64 197
Msa0160960 MtrunA17_Chr6g0458081 48.315 178 92 0 13 190 4 181 1.01e-60 189
Msa0160960 MtrunA17_Chr8g0349711 49.718 177 89 0 14 190 5 181 2.06e-60 188
Msa0160960 MtrunA17_Chr7g0250531 48.333 180 92 1 9 187 2 181 1.06e-55 176
Msa0160960 MtrunA17_Chr8g0349681 51.497 167 81 0 14 180 383 549 1.65e-55 186
Msa0160960 MtrunA17_Chr8g0349681 47.802 182 95 0 9 190 169 350 1.69e-53 180
Msa0160960 MtrunA17_Chr8g0349681 51.923 156 75 0 14 169 12 167 1.05e-51 176
Msa0160960 MtrunA17_Chr8g0335471 42.791 215 107 4 9 222 2 201 6.96e-54 171
Msa0160960 MtrunA17_Chr2g0276931 42.180 211 108 2 13 223 7 203 8.11e-54 171
Msa0160960 MtrunA17_Chr4g0055651 48.810 168 86 0 9 176 2 169 1.13e-53 171
Msa0160960 MtrunA17_Chr1g0182321 40.654 214 113 4 13 223 13 215 3.21e-51 165
Msa0160960 MtrunA17_Chr4g0030911 41.204 216 108 4 13 223 13 214 3.76e-51 165
Msa0160960 MtrunA17_Chr1g0182301 40.187 214 114 4 13 223 13 215 1.09e-50 164
Msa0160960 MtrunA17_Chr1g0212521 39.815 216 112 3 13 223 13 215 4.25e-50 162
Msa0160960 MtrunA17_Chr7g0263071 47.273 165 86 1 13 176 13 177 1.41e-49 161
Msa0160960 MtrunA17_Chr2g0327911 42.614 176 97 3 13 184 13 188 4.85e-46 152
Msa0160960 MtrunA17_Chr1g0199331 44.172 163 90 1 17 178 33 195 6.96e-46 151
Msa0160960 MtrunA17_Chr3g0109721 43.827 162 91 0 17 178 12 173 4.52e-45 149
Msa0160960 MtrunA17_Chr5g0433561 40.782 179 98 1 17 195 12 182 3.07e-44 147
Msa0160960 MtrunA17_Chr8g0384311 37.963 216 118 6 9 222 7 208 4.26e-44 147
Msa0160960 MtrunA17_Chr5g0400131 40.127 157 94 0 16 172 10 166 2.33e-42 142
Msa0160960 MtrunA17_Chr3g0123971 33.649 211 120 2 16 222 10 204 1.18e-41 140
Msa0160960 MtrunA17_Chr8g0382221 33.333 207 127 1 16 222 10 205 1.49e-41 140
Msa0160960 MtrunA17_Chr4g0055081 38.217 157 97 0 16 172 10 166 1.58e-41 140
Msa0160960 MtrunA17_Chr1g0159481 37.209 215 118 7 11 222 13 213 9.94e-41 138
Msa0160960 MtrunA17_Chr8g0390561 38.764 178 101 1 17 194 11 180 1.78e-40 137
Msa0160960 MtrunA17_Chr3g0130271 37.037 216 119 8 10 222 7 208 3.78e-40 136
Msa0160960 MtrunA17_Chr7g0265001 37.736 212 118 3 13 222 14 213 5.14e-40 136
Msa0160960 MtrunA17_Chr1g0197331 37.557 221 113 7 9 222 9 211 4.29e-38 131
Msa0160960 MtrunA17_Chr1g0180291 37.736 212 117 5 13 222 12 210 5.71e-38 131
Msa0160960 MtrunA17_Chr8g0383261 41.818 165 89 3 15 172 12 176 1.99e-37 129
Msa0160960 MtrunA17_Chr6g0466301 42.424 165 88 3 15 172 8 172 3.07e-37 129
Msa0160960 MtrunA17_Chr6g0465491 42.424 165 88 3 15 172 8 172 3.07e-37 129
Msa0160960 MtrunA17_Chr1g0201121 42.424 165 88 3 15 172 8 172 3.19e-37 129
Msa0160960 MtrunA17_Chr4g0034871 38.503 187 108 3 15 194 8 194 2.42e-36 127
Msa0160960 MtrunA17_Chr2g0331691 37.037 189 112 3 15 196 10 198 3.07e-35 124
Msa0160960 MtrunA17_Chr4g0004661 36.508 189 113 3 15 196 64 252 1.96e-33 120
Msa0160960 MtrunA17_Chr6g0466161 39.865 148 82 3 32 172 7 154 4.28e-28 105
Msa0160960 MtrunA17_Chr6g0465471 39.865 148 82 3 32 172 7 154 4.28e-28 105
Msa0160960 MtrunA17_Chr3g0138101 27.523 218 144 5 10 216 7 221 1.40e-21 89.0
Msa0160960 MtrunA17_Chr3g0138121 31.098 164 109 3 10 172 7 167 2.11e-21 88.6
Msa0160960 MtrunA17_Chr3g0138111 31.098 164 109 3 10 172 7 167 2.27e-21 88.2
Msa0160960 MtrunA17_Chr2g0325101 35.152 165 93 5 17 169 8 170 3.71e-21 87.0
Msa0160960 MtrunA17_Chr4g0046211 38.462 117 69 3 17 132 8 122 7.08e-21 85.1
Msa0160960 MtrunA17_Chr4g0037021 33.140 172 87 6 17 169 8 170 1.83e-20 85.5
Msa0160960 MtrunA17_Chr8g0371501 33.333 165 96 5 17 169 8 170 1.31e-19 83.2
Msa0160960 MtrunA17_Chr5g0405791 32.530 166 98 5 16 169 7 170 6.87e-19 81.3
Msa0160960 MtrunA17_Chr6g0486041 37.607 117 70 3 17 132 8 122 2.65e-18 80.1
Msa0160960 MtrunA17_Chr3g0117931 31.515 165 99 5 17 169 10 172 3.91e-18 79.3
Msa0160960 MtrunA17_Chr6g0466431 37.374 99 53 1 15 113 8 97 1.34e-17 75.1
Msa0160960 MtrunA17_Chr6g0465611 37.374 99 53 1 15 113 8 97 1.34e-17 75.1
Msa0160960 MtrunA17_Chr1g0178291 33.121 157 98 3 20 176 433 582 7.05e-15 73.2
Msa0160960 MtrunA17_Chr5g0443631 28.070 171 113 4 16 179 105 272 4.49e-13 67.0
Msa0160960 MtrunA17_Chr2g0331841 41.379 58 34 0 84 141 2 59 1.42e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160960 AT3G12160.1 88.341 223 23 2 1 223 1 220 2.05e-147 409
Msa0160960 AT5G47960.1 78.125 224 45 2 1 223 1 221 3.73e-131 369
Msa0160960 AT5G65270.1 68.037 219 68 2 5 222 7 224 1.70e-109 314
Msa0160960 AT4G39990.1 66.197 213 67 2 11 222 13 221 1.20e-103 299
Msa0160960 AT5G60860.1 60.930 215 79 2 9 223 7 216 9.51e-94 273
Msa0160960 AT1G16920.1 63.333 210 71 3 13 222 11 214 2.84e-93 272
Msa0160960 AT2G33870.1 61.137 211 78 2 13 223 11 217 9.89e-93 271
Msa0160960 AT4G18430.1 59.524 210 80 2 13 222 11 215 2.98e-92 270
Msa0160960 AT1G28550.1 62.381 210 75 2 13 222 11 216 5.27e-92 269
Msa0160960 AT1G06400.1 58.411 214 83 1 9 222 7 214 1.28e-91 268
Msa0160960 AT1G07410.1 60.280 214 78 2 9 222 6 212 2.20e-91 267
Msa0160960 AT3G15060.1 60.190 211 79 1 13 223 11 216 1.63e-90 265
Msa0160960 AT4G18800.1 61.905 210 72 3 13 222 11 212 2.61e-90 265
Msa0160960 AT5G45750.1 60.000 210 78 3 13 222 11 214 3.55e-90 265
Msa0160960 AT1G09630.1 59.070 215 83 2 9 223 6 215 9.40e-90 263
Msa0160960 AT5G59150.1 61.009 218 71 3 10 222 7 215 1.06e-87 258
Msa0160960 AT3G46830.1 58.904 219 76 2 9 222 6 215 6.02e-87 256
Msa0160960 AT3G46830.2 58.904 219 76 2 9 222 6 215 6.02e-87 256
Msa0160960 AT1G01200.1 60.092 218 76 4 10 221 23 235 7.24e-87 257
Msa0160960 AT5G47520.1 53.394 221 97 3 4 222 3 219 7.13e-86 254
Msa0160960 AT2G43130.1 62.500 176 66 0 13 188 10 185 2.47e-82 244
Msa0160960 AT1G05810.1 53.774 212 90 2 13 222 10 215 1.89e-81 242
Msa0160960 AT1G05810.2 53.521 213 91 2 13 223 56 262 4.11e-81 243
Msa0160960 AT2G31680.1 60.795 176 69 0 13 188 10 185 1.54e-80 240
Msa0160960 AT3G07410.1 53.302 212 91 3 13 222 10 215 9.26e-77 230
Msa0160960 AT1G18200.1 49.261 203 99 1 8 206 6 208 9.19e-72 218
Msa0160960 AT1G73640.1 46.018 226 111 4 8 222 6 231 5.56e-69 211
Msa0160960 AT4G17160.1 48.341 211 98 3 14 223 5 205 1.42e-66 204
Msa0160960 AT4G17170.1 46.919 211 107 3 14 223 5 211 2.64e-65 201
Msa0160960 AT4G35860.1 44.393 214 110 3 13 223 4 211 8.69e-63 195
Msa0160960 AT5G59150.2 60.947 169 52 4 59 222 5 164 6.64e-62 191
Msa0160960 AT3G11730.1 44.843 223 104 4 1 223 1 204 2.11e-56 178
Msa0160960 AT1G02130.1 42.056 214 110 2 9 222 2 201 2.01e-55 176
Msa0160960 AT4G17530.1 43.925 214 105 4 9 222 2 200 3.24e-55 175
Msa0160960 AT5G47200.1 42.991 214 107 4 9 222 2 200 7.26e-53 169
Msa0160960 AT3G09900.1 42.925 212 110 4 13 222 13 215 8.63e-51 164
Msa0160960 AT3G46060.2 41.589 214 111 4 13 223 13 215 1.40e-50 164
Msa0160960 AT3G46060.3 41.589 214 111 4 13 223 13 215 1.40e-50 164
Msa0160960 AT3G46060.1 41.589 214 111 4 13 223 13 215 1.40e-50 164
Msa0160960 AT5G03520.1 42.791 215 104 5 13 222 13 213 2.14e-50 163
Msa0160960 AT5G59840.1 41.860 215 109 5 13 223 13 215 6.11e-50 162
Msa0160960 AT3G53610.2 38.991 218 111 3 13 223 13 215 6.49e-49 159
Msa0160960 AT3G53610.3 38.991 218 111 3 13 223 13 215 6.49e-49 159
Msa0160960 AT3G53610.1 38.991 218 111 3 13 223 13 215 6.49e-49 159
Msa0160960 AT3G54840.1 46.626 163 86 1 17 178 35 197 2.13e-48 158
Msa0160960 AT4G35860.2 44.118 170 86 3 57 223 2 165 4.22e-48 155
Msa0160960 AT3G54840.2 48.052 154 79 1 17 169 35 188 5.04e-48 156
Msa0160960 AT4G19640.1 45.399 163 89 0 17 179 12 174 5.76e-48 157
Msa0160960 AT3G54840.3 46.296 162 86 1 18 178 2 163 8.33e-48 155
Msa0160960 AT5G45130.1 44.172 163 91 0 17 179 12 174 4.05e-47 154
Msa0160960 AT5G45130.2 44.099 161 90 0 19 179 22 182 6.89e-46 151
Msa0160960 AT1G43890.3 41.451 193 105 5 11 201 9 195 5.25e-44 147
Msa0160960 AT1G43890.1 41.451 193 105 5 11 201 9 195 5.25e-44 147
Msa0160960 AT1G43890.2 41.451 193 105 5 11 201 9 195 5.25e-44 147
Msa0160960 AT2G44610.1 34.135 208 127 2 16 223 10 207 2.94e-42 142
Msa0160960 AT5G10260.1 33.333 207 128 2 16 222 10 206 2.91e-41 140
Msa0160960 AT2G22290.1 32.850 207 128 1 16 222 10 205 1.26e-40 138
Msa0160960 AT4G39890.1 37.975 158 97 1 16 172 10 167 4.14e-40 137
Msa0160960 AT5G03520.2 40.223 179 88 5 50 223 40 204 1.70e-38 132
Msa0160960 AT5G03530.2 42.105 171 96 3 13 181 11 180 4.48e-38 132
Msa0160960 AT5G03530.1 42.105 171 96 3 13 181 11 180 4.48e-38 132
Msa0160960 AT5G64990.1 36.646 161 102 0 16 176 8 168 1.81e-37 130
Msa0160960 AT2G21880.1 42.424 165 88 3 15 172 9 173 3.31e-37 129
Msa0160960 AT1G22740.1 41.818 165 89 3 15 172 8 172 4.17e-37 129
Msa0160960 AT4G19640.3 37.736 159 98 1 17 175 12 169 4.52e-36 126
Msa0160960 AT1G52280.1 38.095 189 110 3 15 196 8 196 5.48e-36 126
Msa0160960 AT4G09720.1 41.818 165 89 3 15 172 8 172 1.20e-35 125
Msa0160960 AT1G49300.2 37.968 187 109 3 15 194 8 194 4.60e-35 124
Msa0160960 AT1G49300.1 37.968 187 109 3 15 194 8 194 4.60e-35 124
Msa0160960 AT4G19640.2 44.000 125 70 0 17 141 12 136 5.19e-35 122
Msa0160960 AT5G64990.2 35.119 168 102 1 16 176 8 175 8.98e-35 123
Msa0160960 AT3G18820.1 37.968 187 109 3 15 194 8 194 9.97e-35 123
Msa0160960 AT4G09720.4 40.588 170 89 3 15 172 8 177 1.57e-34 122
Msa0160960 AT4G09720.3 39.205 176 89 3 15 172 8 183 1.63e-33 120
Msa0160960 AT3G16100.1 39.394 165 93 3 15 172 8 172 1.71e-32 117
Msa0160960 AT3G09910.3 39.766 171 100 3 13 181 11 180 4.98e-32 116
Msa0160960 AT3G09910.1 39.766 171 100 3 13 181 11 180 4.98e-32 116
Msa0160960 AT3G09910.2 39.766 171 100 3 13 181 11 180 4.98e-32 116
Msa0160960 AT3G09910.5 41.509 159 90 3 13 169 11 168 1.11e-31 115
Msa0160960 AT3G09910.4 41.509 159 90 3 13 169 11 168 1.11e-31 115
Msa0160960 AT5G39620.1 33.803 213 120 5 16 221 6 204 7.66e-31 113
Msa0160960 AT5G46025.1 50.000 102 50 1 77 177 6 107 8.50e-30 107
Msa0160960 AT2G21880.4 40.541 148 81 3 32 172 1 148 4.32e-29 108
Msa0160960 AT2G21880.3 40.541 148 81 3 32 172 1 148 4.32e-29 108
Msa0160960 AT2G21880.2 37.576 165 88 4 15 172 9 165 1.92e-27 104
Msa0160960 AT4G09720.6 42.963 135 70 3 45 172 4 138 1.67e-26 100
Msa0160960 AT4G09720.5 42.963 135 70 3 45 172 4 138 1.67e-26 100
Msa0160960 AT4G09720.2 42.963 135 70 3 45 172 4 138 1.67e-26 100
Msa0160960 AT5G55080.1 30.952 168 112 3 10 176 7 171 1.50e-24 97.1
Msa0160960 AT2G44690.1 37.952 166 87 6 17 169 20 182 1.24e-23 94.4
Msa0160960 AT5G20020.1 31.098 164 109 3 10 172 7 167 2.91e-21 88.6
Msa0160960 AT5G20010.1 31.098 164 109 3 10 172 7 167 3.13e-21 88.2
Msa0160960 AT5G55190.1 31.098 164 109 3 10 172 7 167 3.70e-21 88.2
Msa0160960 AT4G35020.1 33.333 165 96 5 17 169 8 170 1.54e-20 85.9
Msa0160960 AT4G35020.2 33.333 165 96 5 17 169 8 170 1.54e-20 85.9
Msa0160960 AT4G35020.3 33.333 165 96 5 17 169 8 170 1.54e-20 85.9
Msa0160960 AT1G75840.1 33.939 165 95 6 17 169 8 170 6.21e-20 84.3
Msa0160960 AT1G20090.1 33.939 165 95 6 17 169 7 169 7.03e-20 84.3
Msa0160960 AT5G45970.1 34.320 169 97 5 17 173 8 174 1.19e-19 83.6
Msa0160960 AT3G51300.1 33.333 165 96 5 17 169 8 170 1.20e-19 83.6
Msa0160960 AT5G62880.1 31.034 174 106 5 17 178 10 181 9.99e-19 81.6
Msa0160960 AT4G08190.1 59.375 64 23 1 106 169 67 127 1.57e-18 79.0
Msa0160960 AT3G48040.1 31.737 167 96 6 17 169 10 172 1.81e-18 80.9
Msa0160960 AT2G17800.2 32.727 165 97 5 17 169 8 170 1.94e-18 80.5
Msa0160960 AT2G17800.1 32.727 165 97 5 17 169 8 170 1.94e-18 80.5
Msa0160960 AT4G35950.1 36.752 117 71 3 17 132 8 122 2.27e-18 80.1
Msa0160960 AT4G35020.4 35.965 114 70 3 17 129 8 119 2.41e-18 79.0
Msa0160960 AT4G35020.5 35.965 114 70 3 17 129 8 119 2.41e-18 79.0
Msa0160960 AT4G28950.1 36.441 118 72 3 16 132 7 122 9.88e-18 79.0
Msa0160960 AT3G48040.2 36.752 117 71 3 17 132 10 124 1.97e-17 77.4
Msa0160960 AT5G62880.2 35.897 117 72 3 17 132 10 124 2.05e-17 77.4
Msa0160960 AT3G22950.1 33.898 118 72 4 16 132 18 130 2.28e-11 60.8
Msa0160960 AT3G22950.2 33.898 118 72 4 16 132 18 130 2.28e-11 60.8

Find 75 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGATCCTGGTGGTGGTTC+AGG 0.187374 1_4:+34977744 Msa0160960:CDS
AAACTTGTTTATACAAATTC+TGG 0.216872 1_4:+34978042 Msa0160960:three_prime_UTR
TGAGGTTGAGGTTTGGGTTT+TGG 0.243210 1_4:-34974888 None:intergenic
AAACTGTTAAGGCTCAAATA+TGG 0.249016 1_4:+34975207 Msa0160960:CDS
TTCTGGCCCTTTCTGGTTAT+AGG 0.255671 1_4:+34978015 Msa0160960:three_prime_UTR
CTTGCTTGTTGTGATCTTCT+TGG 0.260302 1_4:+34977853 Msa0160960:three_prime_UTR
CCAGAAAGGGCCAGAAAATA+AGG 0.273026 1_4:-34978008 None:intergenic
TTGTGTTGAGGTTGAGGTTT+GGG 0.282724 1_4:-34974894 None:intergenic
AATATTGTCATAATGCTAAT+TGG 0.297275 1_4:+34977531 Msa0160960:CDS
ATTATCAATAACAAGAGTTT+TGG 0.313881 1_4:-34975183 None:intergenic
CATAGGATGTCGAATTTATA+CGG 0.347484 1_4:+34975017 Msa0160960:exon
ATTGGCAACAAGTGTGATTT+GGG 0.348821 1_4:+34977549 Msa0160960:CDS
TAATTTGTAGCAATTAGTTT+AGG 0.355869 1_4:+34978113 Msa0160960:three_prime_UTR
ATGGAAACAGTGTAACTTAC+TGG 0.358344 1_4:+34978083 Msa0160960:three_prime_UTR
CGACGACGTTTCTTTCTGTA+TGG 0.361778 1_4:-34974852 None:intergenic
TTGCTTGTTGTGATCTTCTT+GGG 0.366484 1_4:+34977854 Msa0160960:three_prime_UTR
AATTGGCAACAAGTGTGATT+TGG 0.372094 1_4:+34977548 Msa0160960:CDS
CAGATCCTGGTGGTGGTTCA+GGG 0.385083 1_4:+34977745 Msa0160960:CDS
TATTGATAATAAAACTGTTA+AGG 0.398879 1_4:+34975196 Msa0160960:CDS
AACTGTTAAGGCTCAAATAT+GGG 0.437288 1_4:+34975208 Msa0160960:CDS
TTCTGGTTCAGTTCAGATAG+AGG 0.438214 1_4:+34978059 Msa0160960:three_prime_UTR
AAAGCACTCGCATCTTGGTT+AGG 0.445772 1_4:-34977795 None:intergenic
GTTGATTCTAAAGCTACAAT+TGG 0.446862 1_4:+34975146 Msa0160960:CDS
TTTGTGTTGAGGTTGAGGTT+TGG 0.448590 1_4:-34974895 None:intergenic
TCACATGGCAAGATGGTTAG+AGG 0.456753 1_4:+34977485 Msa0160960:CDS
TTTCAAAAGCACTCGCATCT+TGG 0.457557 1_4:-34977800 None:intergenic
ACCAGGATCTGCCTCATCAT+TGG 0.458276 1_4:-34977733 None:intergenic
CAATCTTATCTGCAAAATGT+AGG 0.471480 1_4:+34977938 Msa0160960:three_prime_UTR
AGGGCCAGAAAATAAGGAAA+TGG 0.475848 1_4:-34978002 None:intergenic
TGGTGGTTCAGGGCTTCTGA+AGG 0.476345 1_4:+34977755 Msa0160960:CDS
TTGATTGGTGATTCTGCCGT+TGG 0.485705 1_4:+34975080 Msa0160960:CDS
TTTAAATCCTATAACCAGAA+AGG 0.486552 1_4:-34978022 None:intergenic
TTTCTTTCTGTATGGGTCAA+AGG 0.487672 1_4:-34974844 None:intergenic
GTATTCAAAGTGGTGTTGAT+TGG 0.495323 1_4:+34975065 Msa0160960:CDS
CTGATGTCTCCATAAAGAAA+AGG 0.498679 1_4:-34977626 None:intergenic
AAAGGCGGTTTCGACATTAG+TGG 0.498739 1_4:-34977658 None:intergenic
TTAAATCCTATAACCAGAAA+GGG 0.499141 1_4:-34978021 None:intergenic
GGCTCTGCCTACATGTGGGT+TGG 0.499271 1_4:+34977895 Msa0160960:three_prime_UTR
GTGTGATTTGGGAACTCTAA+AGG 0.501914 1_4:+34977560 Msa0160960:CDS
TAATCATGAAGAGAATGAAA+AGG 0.502459 1_4:-34974925 None:intergenic
CAGGGCTTCTGAAGGGAACC+AGG 0.508518 1_4:+34977763 Msa0160960:CDS
GGGAAGCTTATTGCTCACTC+TGG 0.508994 1_4:+34977874 Msa0160960:three_prime_UTR
AGTACCTACTGAAGATGCTC+AGG 0.512755 1_4:+34977584 Msa0160960:CDS
CATTTGATCACATGGCAAGA+TGG 0.515877 1_4:+34977478 Msa0160960:CDS
TTGGTTAGGAACAATTATCC+TGG 0.519414 1_4:-34977781 None:intergenic
TTCTGTTAGAATAGTCAGAA+AGG 0.528911 1_4:-34977676 None:intergenic
ACTCTGGCTCTGCCTACATG+TGG 0.536353 1_4:+34977890 Msa0160960:three_prime_UTR
CTCTGGCTCTGCCTACATGT+GGG 0.541629 1_4:+34977891 Msa0160960:three_prime_UTR
GGTGGTTCAGGGCTTCTGAA+GGG 0.541689 1_4:+34977756 Msa0160960:CDS
GCGTATTACCGTGGAGCTGT+TGG 0.546431 1_4:+34977420 Msa0160960:CDS
AGTTTCGTTGTTGTTGAGGA+TGG 0.546540 1_4:-34974818 None:intergenic
GTGCAGTTTCGTTGTTGTTG+AGG 0.546668 1_4:-34974822 None:intergenic
GCCAATGATGAGGCAGATCC+TGG 0.550258 1_4:+34977732 Msa0160960:CDS
GGGACACTGCTGGTCAAGAA+AGG 0.550300 1_4:+34975228 Msa0160960:CDS
GACGACGTTTCTTTCTGTAT+GGG 0.552948 1_4:-34974851 None:intergenic
AAGAGAAGCAAATTTACCAT+AGG 0.553711 1_4:+34974713 Msa0160960:five_prime_UTR
AGAAGCCCTGAACCACCACC+AGG 0.558428 1_4:-34977750 None:intergenic
GCTCAAATATGGGACACTGC+TGG 0.573380 1_4:+34975218 Msa0160960:CDS
TAATTGCTATGATAATGATA+AGG 0.573458 1_4:-34974957 None:intergenic
GAAAAGAAGGGTGGTTGCTG+CGG 0.586510 1_4:+34977819 Msa0160960:CDS
GCGTCAATCATTTGATCACA+TGG 0.593625 1_4:+34977470 Msa0160960:CDS
AAGATGGTTAGAGGAACTGA+GGG 0.608152 1_4:+34977494 Msa0160960:CDS
ATGTTATGTTATGATGATGA+CGG 0.609812 1_4:-34974690 None:intergenic
AACACTTACTGCCAATGATG+AGG 0.617734 1_4:+34977722 Msa0160960:CDS
GTTCAGTTCAGATAGAGGAA+TGG 0.624925 1_4:+34978064 Msa0160960:three_prime_UTR
TGTGAAAGAATCTAAAGTGC+CGG 0.633348 1_4:+34978156 Msa0160960:three_prime_UTR
CAAGATGGTTAGAGGAACTG+AGG 0.635134 1_4:+34977493 Msa0160960:CDS
GATCGATTACGTATTCAAAG+TGG 0.635729 1_4:+34975055 Msa0160960:CDS
GATGAGGCAGATCCTGGTGG+TGG 0.641867 1_4:+34977738 Msa0160960:CDS
ACATCGCTCCAACAGCTCCA+CGG 0.650042 1_4:-34977428 None:intergenic
AACTCCTGAGCATCTTCAGT+AGG 0.655334 1_4:-34977588 None:intergenic
GTAACTAGTGCGTATTACCG+TGG 0.661026 1_4:+34977411 Msa0160960:CDS
TGTTAGAATAGTCAGAAAGG+CGG 0.662740 1_4:-34977673 None:intergenic
AATGATGAGGCAGATCCTGG+TGG 0.756314 1_4:+34977735 Msa0160960:CDS
AGATGGTTAGAGGAACTGAG+GGG 0.801297 1_4:+34977495 Msa0160960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTTTGTATTTTTTTTTT+TGG - chr1_4:34974775-34974794 None:intergenic 10.0%
!! AGTATTTATAATAACATATT+AGG + chr1_4:34976352-34976371 Msa0160960:intron 10.0%
!!! TTTGTTCAATTTTTAATCAT+AGG + chr1_4:34975000-34975019 Msa0160960:five_prime_UTR 15.0%
!!! TATTGATAATAAAACTGTTA+AGG + chr1_4:34975196-34975215 Msa0160960:CDS 15.0%
!!! TTTATTTTTAGAATTAGTGT+TGG + chr1_4:34975421-34975440 Msa0160960:intron 15.0%
!!! TCAAATTTTAATACAATTTG+TGG + chr1_4:34975968-34975987 Msa0160960:intron 15.0%
!! AATGATTATTGAATGATTAT+GGG - chr1_4:34976479-34976498 None:intergenic 15.0%
!!! TTATATTGTTTTCTAATAAG+AGG + chr1_4:34976804-34976823 Msa0160960:intron 15.0%
!! TAAATGAAAGAAATATTGTT+TGG + chr1_4:34976941-34976960 Msa0160960:intron 15.0%
!!! TAATTGCTATGATAATGATA+AGG - chr1_4:34974960-34974979 None:intergenic 20.0%
!!! ATTATCAATAACAAGAGTTT+TGG - chr1_4:34975186-34975205 None:intergenic 20.0%
!!! TATTTAATTTCATGTCGTTT+TGG + chr1_4:34975296-34975315 Msa0160960:intron 20.0%
!!! TTCAATGATAATGATGATTA+TGG + chr1_4:34975338-34975357 Msa0160960:intron 20.0%
!! CGTACTTATAACTTATAATA+TGG + chr1_4:34975757-34975776 Msa0160960:intron 20.0%
!! CTGAAAAGTAATTTACAATT+TGG + chr1_4:34975920-34975939 Msa0160960:intron 20.0%
!! ATTGATAAACAATCATTGTT+CGG - chr1_4:34976233-34976252 None:intergenic 20.0%
!!! TTTTAGGAAAGAAATGAAAA+AGG + chr1_4:34976303-34976322 Msa0160960:intron 20.0%
!! TTTAGGAAAGAAATGAAAAA+GGG + chr1_4:34976304-34976323 Msa0160960:intron 20.0%
!! TTAGGAAATAAAACTAACTA+AGG + chr1_4:34976370-34976389 Msa0160960:intron 20.0%
!! GAATGATTATTGAATGATTA+TGG - chr1_4:34976480-34976499 None:intergenic 20.0%
!!! TGTCAGTAATGTTTAATTTT+AGG - chr1_4:34976538-34976557 None:intergenic 20.0%
!! TTTATTTGTAAACTTGGTTT+AGG + chr1_4:34976859-34976878 Msa0160960:intron 20.0%
!!! GAACAAATCATTTTTAGATA+TGG + chr1_4:34976977-34976996 Msa0160960:intron 20.0%
!! AATATTGTCATAATGCTAAT+TGG + chr1_4:34977531-34977550 Msa0160960:CDS 20.0%
!!! AAACTTGTTTATACAAATTC+TGG + chr1_4:34978042-34978061 Msa0160960:three_prime_UTR 20.0%
!!! TAATTTGTAGCAATTAGTTT+AGG + chr1_4:34978113-34978132 Msa0160960:three_prime_UTR 20.0%
!!! ATGATGACGGTTTTTTTTTA+GGG - chr1_4:34974680-34974699 None:intergenic 25.0%
!! ATGTTATGTTATGATGATGA+CGG - chr1_4:34974693-34974712 None:intergenic 25.0%
! TAATCATGAAGAGAATGAAA+AGG - chr1_4:34974928-34974947 None:intergenic 25.0%
!! AATGATAATGATGATTATGG+TGG + chr1_4:34975341-34975360 Msa0160960:intron 25.0%
!! ATGATAATGATGATTATGGT+GGG + chr1_4:34975342-34975361 Msa0160960:intron 25.0%
! AATATAACCACATAAACCAT+CGG - chr1_4:34975502-34975521 None:intergenic 25.0%
! GGTAATAAAAAATGTAGTAC+TGG + chr1_4:34975778-34975797 Msa0160960:intron 25.0%
! CATAATACATTACATAGACA+CGG - chr1_4:34975833-34975852 None:intergenic 25.0%
!! ATTGAGTAATGTATGTTTTG+AGG + chr1_4:34975944-34975963 Msa0160960:intron 25.0%
!!! TTGAGTAATGTATGTTTTGA+GGG + chr1_4:34975945-34975964 Msa0160960:intron 25.0%
! CAACATGCAACAATTAATAA+AGG - chr1_4:34976002-34976021 None:intergenic 25.0%
! TTGTTTATCAATGAGTTACA+AGG + chr1_4:34976241-34976260 Msa0160960:intron 25.0%
! TTCATTTCTTTCCTAAAAAG+AGG - chr1_4:34976301-34976320 None:intergenic 25.0%
! TCTACTTGTTTGAACTTTAA+AGG + chr1_4:34976403-34976422 Msa0160960:intron 25.0%
!!! TTTTAGGAATAAACAGAGAA+AGG - chr1_4:34976522-34976541 None:intergenic 25.0%
! ATCAAGAATTGATCAAGAAA+AGG + chr1_4:34976610-34976629 Msa0160960:intron 25.0%
! AATAATGATAAATACAGCGA+AGG - chr1_4:34976744-34976763 None:intergenic 25.0%
!!! TGAGGTTTTATTTGTAAACT+TGG + chr1_4:34976853-34976872 Msa0160960:intron 25.0%
! ATATTGTTTGGATTCTGATA+TGG + chr1_4:34976953-34976972 Msa0160960:intron 25.0%
!! GATATGGAAATACTTTTAGA+AGG + chr1_4:34976993-34977012 Msa0160960:intron 25.0%
!!! TTTTTTAATACATACGCAAC+TGG + chr1_4:34977047-34977066 Msa0160960:intron 25.0%
!! ATGTTCTAAACAAGTTCTAA+TGG + chr1_4:34977141-34977160 Msa0160960:intron 25.0%
!!! GAATGTTTGAGACTTTTATT+TGG + chr1_4:34977337-34977356 Msa0160960:intron 25.0%
! TTAAATCCTATAACCAGAAA+GGG - chr1_4:34978024-34978043 None:intergenic 25.0%
! TTTAAATCCTATAACCAGAA+AGG - chr1_4:34978025-34978044 None:intergenic 25.0%
!!! GATGATGACGGTTTTTTTTT+AGG - chr1_4:34974681-34974700 None:intergenic 30.0%
AAGAGAAGCAAATTTACCAT+AGG + chr1_4:34974713-34974732 Msa0160960:five_prime_UTR 30.0%
! TCGATTTTCGATATAACCTA+TGG - chr1_4:34974732-34974751 None:intergenic 30.0%
CATAGGATGTCGAATTTATA+CGG + chr1_4:34975017-34975036 Msa0160960:exon 30.0%
! AAGAAGTTGTGTTTTTCCAA+CGG - chr1_4:34975099-34975118 None:intergenic 30.0%
!! GTTGATTCTAAAGCTACAAT+TGG + chr1_4:34975146-34975165 Msa0160960:CDS 30.0%
AAACTGTTAAGGCTCAAATA+TGG + chr1_4:34975207-34975226 Msa0160960:CDS 30.0%
AACTGTTAAGGCTCAAATAT+GGG + chr1_4:34975208-34975227 Msa0160960:CDS 30.0%
TGATGTGTTTATGATGTGTT+TGG - chr1_4:34975373-34975392 None:intergenic 30.0%
! GAAGTATTACTTGTGTCAAA+TGG + chr1_4:34975534-34975553 Msa0160960:intron 30.0%
! GATTAGTCACTGCTAAAAAA+CGG + chr1_4:34975646-34975665 Msa0160960:intron 30.0%
CATGTTGTTGATATAGTTGT+GGG + chr1_4:34976015-34976034 Msa0160960:intron 30.0%
GAAAGAAATGAAAAAGGGAA+TGG + chr1_4:34976309-34976328 Msa0160960:intron 30.0%
GACTCTTGAATTTCTTGAAA+AGG - chr1_4:34976434-34976453 None:intergenic 30.0%
AATAAACAGAGAAAGGAAAG+GGG - chr1_4:34976515-34976534 None:intergenic 30.0%
GAATAAACAGAGAAAGGAAA+GGG - chr1_4:34976516-34976535 None:intergenic 30.0%
AAGCCAATTAAATTTCATGC+TGG + chr1_4:34976636-34976655 Msa0160960:intron 30.0%
GAAAACAATATAAGCAGCAA+TGG - chr1_4:34976797-34976816 None:intergenic 30.0%
! CACATTTTTGCCATACATAT+TGG + chr1_4:34977113-34977132 Msa0160960:intron 30.0%
AACATGCAAACCAATATGTA+TGG - chr1_4:34977126-34977145 None:intergenic 30.0%
! AAGAGAGAACCTTTTCTTTA+TGG + chr1_4:34977617-34977636 Msa0160960:CDS 30.0%
TTCTGTTAGAATAGTCAGAA+AGG - chr1_4:34977679-34977698 None:intergenic 30.0%
!!! GTGTTTTTTTGCTGATAAGT+CGG - chr1_4:34977707-34977726 None:intergenic 30.0%
CAATCTTATCTGCAAAATGT+AGG + chr1_4:34977938-34977957 Msa0160960:three_prime_UTR 30.0%
!!! CATACCATTTCCTTATTTTC+TGG + chr1_4:34977998-34978017 Msa0160960:three_prime_UTR 30.0%
TTTCTTTCTGTATGGGTCAA+AGG - chr1_4:34974847-34974866 None:intergenic 35.0%
! AAGGTTTGTGTTTTGTGTTG+AGG - chr1_4:34974909-34974928 None:intergenic 35.0%
GATCGATTACGTATTCAAAG+TGG + chr1_4:34975055-34975074 Msa0160960:CDS 35.0%
!! GTATTCAAAGTGGTGTTGAT+TGG + chr1_4:34975065-34975084 Msa0160960:CDS 35.0%
GTGTTTATGATGTGTTTGGA+GGG - chr1_4:34975369-34975388 None:intergenic 35.0%
TGTGTTTATGATGTGTTTGG+AGG - chr1_4:34975370-34975389 None:intergenic 35.0%
! GCATCGATACTTTGAATTGA+AGG + chr1_4:34975471-34975490 Msa0160960:intron 35.0%
ATTACTTGTGTCAAATGGCA+AGG + chr1_4:34975539-34975558 Msa0160960:intron 35.0%
TTACTTGTGTCAAATGGCAA+GGG + chr1_4:34975540-34975559 Msa0160960:intron 35.0%
! GATTAGTCACCACTAAACAT+CGG + chr1_4:34975725-34975744 Msa0160960:intron 35.0%
CCTCGTTGAATTACTATCTA+TGG - chr1_4:34975881-34975900 None:intergenic 35.0%
CCATAGATAGTAATTCAACG+AGG + chr1_4:34975878-34975897 Msa0160960:intron 35.0%
TAGATAGTAATTCAACGAGG+TGG + chr1_4:34975881-34975900 Msa0160960:intron 35.0%
GCATGTTGTTGATATAGTTG+TGG + chr1_4:34976014-34976033 Msa0160960:intron 35.0%
TGCATGTCCTAAAATTCACA+AGG + chr1_4:34976142-34976161 Msa0160960:intron 35.0%
! GTTGCTTCCTTGTGAATTTT+AGG - chr1_4:34976152-34976171 None:intergenic 35.0%
!! AAACAGAGTGTCCTCTTTTT+AGG + chr1_4:34976287-34976306 Msa0160960:intron 35.0%
GAAAAAGGGAATGGAATCTA+CGG + chr1_4:34976318-34976337 Msa0160960:intron 35.0%
! TTCAAGAGTCTTGTGTTGTT+TGG + chr1_4:34976444-34976463 Msa0160960:intron 35.0%
GGAATAAACAGAGAAAGGAA+AGG - chr1_4:34976517-34976536 None:intergenic 35.0%
CAATTAAATTTCATGCTGGC+CGG + chr1_4:34976640-34976659 Msa0160960:intron 35.0%
AATGGGGTGTAATTAAGGAA+AGG + chr1_4:34976677-34976696 Msa0160960:intron 35.0%
! AACAAGTTCTAATGGTGCAA+TGG + chr1_4:34977149-34977168 Msa0160960:intron 35.0%
! ACAAGTTCTAATGGTGCAAT+GGG + chr1_4:34977150-34977169 Msa0160960:intron 35.0%
! GCCTTCTTTTCATTTGTCTT+TGG + chr1_4:34977235-34977254 Msa0160960:intron 35.0%
GCCAAAGACAAATGAAAAGA+AGG - chr1_4:34977239-34977258 None:intergenic 35.0%
!! GAGACTTTTATTTGGTACTC+TGG + chr1_4:34977345-34977364 Msa0160960:intron 35.0%
AATTGGCAACAAGTGTGATT+TGG + chr1_4:34977548-34977567 Msa0160960:CDS 35.0%
ATTGGCAACAAGTGTGATTT+GGG + chr1_4:34977549-34977568 Msa0160960:CDS 35.0%
CTGATGTCTCCATAAAGAAA+AGG - chr1_4:34977629-34977648 None:intergenic 35.0%
TGTTAGAATAGTCAGAAAGG+CGG - chr1_4:34977676-34977695 None:intergenic 35.0%
TTGGTTAGGAACAATTATCC+TGG - chr1_4:34977784-34977803 None:intergenic 35.0%
!! TTGCTTGTTGTGATCTTCTT+GGG + chr1_4:34977854-34977873 Msa0160960:three_prime_UTR 35.0%
ATGGAAACAGTGTAACTTAC+TGG + chr1_4:34978083-34978102 Msa0160960:three_prime_UTR 35.0%
AGGATGGTGAAAAACTCGAT+CGG - chr1_4:34974805-34974824 None:intergenic 40.0%
! AGTTTCGTTGTTGTTGAGGA+TGG - chr1_4:34974821-34974840 None:intergenic 40.0%
GACGACGTTTCTTTCTGTAT+GGG - chr1_4:34974854-34974873 None:intergenic 40.0%
!!! TGAGGTTTGGGTTTTGGTTT+GGG - chr1_4:34974885-34974904 None:intergenic 40.0%
!!! TTGAGGTTTGGGTTTTGGTT+TGG - chr1_4:34974886-34974905 None:intergenic 40.0%
TTGTGTTGAGGTTGAGGTTT+GGG - chr1_4:34974897-34974916 None:intergenic 40.0%
TTTGTGTTGAGGTTGAGGTT+TGG - chr1_4:34974898-34974917 None:intergenic 40.0%
! TGTGTTTTGTGTTGAGGTTG+AGG - chr1_4:34974903-34974922 None:intergenic 40.0%
!! AACTTCTTGCTCGTTTTTCG+AGG + chr1_4:34975111-34975130 Msa0160960:CDS 40.0%
TGTCAAATGGCAAGGGATTT+GGG + chr1_4:34975547-34975566 Msa0160960:intron 40.0%
GATTTGGGTGTTTAAGCAAG+TGG + chr1_4:34975562-34975581 Msa0160960:intron 40.0%
GGTGTTTAAGCAAGTGGTAT+GGG + chr1_4:34975568-34975587 Msa0160960:intron 40.0%
GTGTTTAAGCAAGTGGTATG+GGG + chr1_4:34975569-34975588 Msa0160960:intron 40.0%
ATCCATTGGACACACAAGAT+GGG - chr1_4:34975615-34975634 None:intergenic 40.0%
AATCCATTGGACACACAAGA+TGG - chr1_4:34975616-34975635 None:intergenic 40.0%
! TGTGTGTCCAATGGATTTCT+CGG + chr1_4:34975619-34975638 Msa0160960:intron 40.0%
ATCTCTACCGAGAAATCCAT+TGG - chr1_4:34975629-34975648 None:intergenic 40.0%
ATCAAACTTGTGTGCCAAAG+AGG + chr1_4:34975690-34975709 Msa0160960:intron 40.0%
TCTCCATCGAAAAACCTCTT+TGG - chr1_4:34975707-34975726 None:intergenic 40.0%
AAGTTTCCACCGATGTTTAG+TGG - chr1_4:34975737-34975756 None:intergenic 40.0%
ATTATGTTTGATGCCCGTGT+CGG + chr1_4:34975847-34975866 Msa0160960:intron 40.0%
ATAGTAATTCAACGAGGTGG+TGG + chr1_4:34975884-34975903 Msa0160960:intron 40.0%
TGTTCAATGGTTTCACCTTG+TGG + chr1_4:34976062-34976081 Msa0160960:intron 40.0%
ACATGCATGACACAGTTTCT+CGG - chr1_4:34976129-34976148 None:intergenic 40.0%
CAATCCTAACAGATGAGTCT+TGG - chr1_4:34976187-34976206 None:intergenic 40.0%
CAAGACTCATCTGTTAGGAT+TGG + chr1_4:34976185-34976204 Msa0160960:intron 40.0%
AGGAAAGGGGAAAGTGATAA+TGG - chr1_4:34976502-34976521 None:intergenic 40.0%
CGGCCAGCATGAAATTTAAT+TGG - chr1_4:34976642-34976661 None:intergenic 40.0%
!! GAGGTAATGGGGTGTAATTA+AGG + chr1_4:34976672-34976691 Msa0160960:intron 40.0%
GGTGTAATTAAGGAAAGGTG+TGG + chr1_4:34976682-34976701 Msa0160960:intron 40.0%
AGGTTTATTGCCATCCTAGT+GGG + chr1_4:34976824-34976843 Msa0160960:intron 40.0%
AAACCTCAAAAGAACCCACT+AGG - chr1_4:34976841-34976860 None:intergenic 40.0%
AAGAAGGCAACATACGATGT+AGG - chr1_4:34977223-34977242 None:intergenic 40.0%
ACCTAAGCTAATGCAGAAGA+AGG - chr1_4:34977265-34977284 None:intergenic 40.0%
GCGTCAATCATTTGATCACA+TGG + chr1_4:34977470-34977489 Msa0160960:CDS 40.0%
CATTTGATCACATGGCAAGA+TGG + chr1_4:34977478-34977497 Msa0160960:CDS 40.0%
AAGATGGTTAGAGGAACTGA+GGG + chr1_4:34977494-34977513 Msa0160960:CDS 40.0%
! GTGTGATTTGGGAACTCTAA+AGG + chr1_4:34977560-34977579 Msa0160960:CDS 40.0%
AACACTTACTGCCAATGATG+AGG + chr1_4:34977722-34977741 Msa0160960:CDS 40.0%
!! TTTCAAAAGCACTCGCATCT+TGG - chr1_4:34977803-34977822 None:intergenic 40.0%
!! TGCGAGTGCTTTTGAAAAGA+AGG + chr1_4:34977806-34977825 Msa0160960:CDS 40.0%
!! GCGAGTGCTTTTGAAAAGAA+GGG + chr1_4:34977807-34977826 Msa0160960:CDS 40.0%
!! AGTGCTTTTGAAAAGAAGGG+TGG + chr1_4:34977810-34977829 Msa0160960:CDS 40.0%
!! CTTGCTTGTTGTGATCTTCT+TGG + chr1_4:34977853-34977872 Msa0160960:three_prime_UTR 40.0%
AAAAACACCAACCCACATGT+AGG - chr1_4:34977905-34977924 None:intergenic 40.0%
!!! TGGGTTGGTGTTTTTAGAGA+GGG + chr1_4:34977910-34977929 Msa0160960:three_prime_UTR 40.0%
AGGGCCAGAAAATAAGGAAA+TGG - chr1_4:34978005-34978024 None:intergenic 40.0%
!! TTCTGGTTCAGTTCAGATAG+AGG + chr1_4:34978059-34978078 Msa0160960:three_prime_UTR 40.0%
GTTCAGTTCAGATAGAGGAA+TGG + chr1_4:34978064-34978083 Msa0160960:three_prime_UTR 40.0%
! GTGCAGTTTCGTTGTTGTTG+AGG - chr1_4:34974825-34974844 None:intergenic 45.0%
CGACGACGTTTCTTTCTGTA+TGG - chr1_4:34974855-34974874 None:intergenic 45.0%
!! TGAGGTTGAGGTTTGGGTTT+TGG - chr1_4:34974891-34974910 None:intergenic 45.0%
! TTGATTGGTGATTCTGCCGT+TGG + chr1_4:34975080-34975099 Msa0160960:CDS 45.0%
GTGTCAAATGGCAAGGGATT+TGG + chr1_4:34975546-34975565 Msa0160960:intron 45.0%
GGGTGTTTAAGCAAGTGGTA+TGG + chr1_4:34975567-34975586 Msa0160960:intron 45.0%
!! GTGCCAAAGAGGTTTTTCGA+TGG + chr1_4:34975701-34975720 Msa0160960:intron 45.0%
TAGTCACCACTAAACATCGG+TGG + chr1_4:34975728-34975747 Msa0160960:intron 45.0%
!! AGTACTGGTGTCTATGCGTA+AGG + chr1_4:34975793-34975812 Msa0160960:intron 45.0%
! GTACTGGTGTCTATGCGTAA+GGG + chr1_4:34975794-34975813 Msa0160960:intron 45.0%
GATATAGTTGTGGGTGCTTG+TGG + chr1_4:34976024-34976043 Msa0160960:intron 45.0%
TTGTGGGTGCTTGTGGAAAA+GGG + chr1_4:34976031-34976050 Msa0160960:intron 45.0%
TGGTTTCACCTTGTGGTATC+TGG + chr1_4:34976069-34976088 Msa0160960:intron 45.0%
GGTTTCACCTTGTGGTATCT+GGG + chr1_4:34976070-34976089 Msa0160960:intron 45.0%
GTTTCACCTTGTGGTATCTG+GGG + chr1_4:34976071-34976090 Msa0160960:intron 45.0%
TGAGTCTTGGCTCAACGATA+AGG - chr1_4:34976174-34976193 None:intergenic 45.0%
TGAGCCAAGACTCATCTGTT+AGG + chr1_4:34976180-34976199 Msa0160960:intron 45.0%
CCATTACCTCCCTTGATTTC+CGG - chr1_4:34976662-34976681 None:intergenic 45.0%
CGGAAATCAAGGGAGGTAAT+GGG + chr1_4:34976660-34976679 Msa0160960:intron 45.0%
GGAAATCAAGGGAGGTAATG+GGG + chr1_4:34976661-34976680 Msa0160960:intron 45.0%
GAGGTTTATTGCCATCCTAG+TGG + chr1_4:34976823-34976842 Msa0160960:intron 45.0%
CTCAAAAGAACCCACTAGGA+TGG - chr1_4:34976837-34976856 None:intergenic 45.0%
!!! CATCCTAGTGGGTTCTTTTG+AGG + chr1_4:34976835-34976854 Msa0160960:intron 45.0%
! GCCTTCTTCTGCATTAGCTT+AGG + chr1_4:34977261-34977280 Msa0160960:intron 45.0%
ATCTCCTCTCTCATTCTCTC+AGG + chr1_4:34977379-34977398 Msa0160960:intron 45.0%
TGTACCTGAGAGAATGAGAG+AGG - chr1_4:34977386-34977405 None:intergenic 45.0%
GTAACTAGTGCGTATTACCG+TGG + chr1_4:34977411-34977430 Msa0160960:CDS 45.0%
TCACATGGCAAGATGGTTAG+AGG + chr1_4:34977485-34977504 Msa0160960:CDS 45.0%
CAAGATGGTTAGAGGAACTG+AGG + chr1_4:34977493-34977512 Msa0160960:CDS 45.0%
AGATGGTTAGAGGAACTGAG+GGG + chr1_4:34977495-34977514 Msa0160960:CDS 45.0%
AGTACCTACTGAAGATGCTC+AGG + chr1_4:34977584-34977603 Msa0160960:CDS 45.0%
AACTCCTGAGCATCTTCAGT+AGG - chr1_4:34977591-34977610 None:intergenic 45.0%
AAAGGCGGTTTCGACATTAG+TGG - chr1_4:34977661-34977680 None:intergenic 45.0%
! AAAGCACTCGCATCTTGGTT+AGG - chr1_4:34977798-34977817 None:intergenic 45.0%
!!! GTGGGTTGGTGTTTTTAGAG+AGG + chr1_4:34977909-34977928 Msa0160960:three_prime_UTR 45.0%
CCAGAAAGGGCCAGAAAATA+AGG - chr1_4:34978011-34978030 None:intergenic 45.0%
!!! CCTTATTTTCTGGCCCTTTC+TGG + chr1_4:34978008-34978027 Msa0160960:three_prime_UTR 45.0%
!! TTCTGGCCCTTTCTGGTTAT+AGG + chr1_4:34978015-34978034 Msa0160960:three_prime_UTR 45.0%
GCTCAAATATGGGACACTGC+TGG + chr1_4:34975218-34975237 Msa0160960:CDS 50.0%
! TGAATTGAAGGCGTGTCCGA+TGG + chr1_4:34975483-34975502 Msa0160960:intron 50.0%
GACCCATCTTGTGTGTCCAA+TGG + chr1_4:34975610-34975629 Msa0160960:intron 50.0%
GTTGTGGGTGCTTGTGGAAA+AGG + chr1_4:34976030-34976049 Msa0160960:intron 50.0%
AAGGGCGGGTGAATGTTCAA+TGG + chr1_4:34976049-34976068 Msa0160960:intron 50.0%
! GACACAGTTTCTCGGCTTGT+GGG - chr1_4:34976121-34976140 None:intergenic 50.0%
! TGACACAGTTTCTCGGCTTG+TGG - chr1_4:34976122-34976141 None:intergenic 50.0%
TTCATGCTGGCCGGAAATCA+AGG + chr1_4:34976649-34976668 Msa0160960:intron 50.0%
TCATGCTGGCCGGAAATCAA+GGG + chr1_4:34976650-34976669 Msa0160960:intron 50.0%
CCGGAAATCAAGGGAGGTAA+TGG + chr1_4:34976659-34976678 Msa0160960:intron 50.0%
ACCAGGATCTGCCTCATCAT+TGG - chr1_4:34977736-34977755 None:intergenic 50.0%
AATGATGAGGCAGATCCTGG+TGG + chr1_4:34977735-34977754 Msa0160960:CDS 50.0%
GAAAAGAAGGGTGGTTGCTG+CGG + chr1_4:34977819-34977838 Msa0160960:CDS 50.0%
GGGAAGCTTATTGCTCACTC+TGG + chr1_4:34977874-34977893 Msa0160960:three_prime_UTR 50.0%
GGGACACTGCTGGTCAAGAA+AGG + chr1_4:34975228-34975247 Msa0160960:CDS 55.0%
GGCGTGTCCGATGGTTTATG+TGG + chr1_4:34975492-34975511 Msa0160960:intron 55.0%
!! TATGGGGTACCGCGGGTAAA+GGG + chr1_4:34975585-34975604 Msa0160960:intron 55.0%
! TTTGATGCCCGTGTCGGTGT+CGG + chr1_4:34975853-34975872 Msa0160960:intron 55.0%
TGGGTGCTTGTGGAAAAGGG+CGG + chr1_4:34976034-34976053 Msa0160960:intron 55.0%
TCACCTTGTGGTATCTGGGG+AGG + chr1_4:34976074-34976093 Msa0160960:intron 55.0%
CACCTTGTGGTATCTGGGGA+GGG + chr1_4:34976075-34976094 Msa0160960:intron 55.0%
TACCCTCCCCAGATACCACA+AGG - chr1_4:34976080-34976099 None:intergenic 55.0%
GCGTATTACCGTGGAGCTGT+TGG + chr1_4:34977420-34977439 Msa0160960:CDS 55.0%
ACATCGCTCCAACAGCTCCA+CGG - chr1_4:34977431-34977450 None:intergenic 55.0%
GCCAATGATGAGGCAGATCC+TGG + chr1_4:34977732-34977751 Msa0160960:CDS 55.0%
!! CAGATCCTGGTGGTGGTTCA+GGG + chr1_4:34977745-34977764 Msa0160960:CDS 55.0%
TGGTGGTTCAGGGCTTCTGA+AGG + chr1_4:34977755-34977774 Msa0160960:CDS 55.0%
GGTGGTTCAGGGCTTCTGAA+GGG + chr1_4:34977756-34977775 Msa0160960:CDS 55.0%
!! ACTCTGGCTCTGCCTACATG+TGG + chr1_4:34977890-34977909 Msa0160960:three_prime_UTR 55.0%
!! CTCTGGCTCTGCCTACATGT+GGG + chr1_4:34977891-34977910 Msa0160960:three_prime_UTR 55.0%
!! GCAAGTGGTATGGGGTACCG+CGG + chr1_4:34975577-34975596 Msa0160960:intron 60.0%
!! CAAGTGGTATGGGGTACCGC+GGG + chr1_4:34975578-34975597 Msa0160960:intron 60.0%
!! GTATGGGGTACCGCGGGTAA+AGG + chr1_4:34975584-34975603 Msa0160960:intron 60.0%
ATGGGTCCTCCCTTTACCCG+CGG - chr1_4:34975597-34975616 None:intergenic 60.0%
TATGGAGCCGACACCGACAC+GGG - chr1_4:34975863-34975882 None:intergenic 60.0%
CTATGGAGCCGACACCGACA+CGG - chr1_4:34975864-34975883 None:intergenic 60.0%
GGGTGCTTGTGGAAAAGGGC+GGG + chr1_4:34976035-34976054 Msa0160960:intron 60.0%
TGCTGGCCGGAAATCAAGGG+AGG + chr1_4:34976653-34976672 Msa0160960:intron 60.0%
GATGAGGCAGATCCTGGTGG+TGG + chr1_4:34977738-34977757 Msa0160960:CDS 60.0%
!! GCAGATCCTGGTGGTGGTTC+AGG + chr1_4:34977744-34977763 Msa0160960:CDS 60.0%
AGAAGCCCTGAACCACCACC+AGG - chr1_4:34977753-34977772 None:intergenic 60.0%
! CAGGGCTTCTGAAGGGAACC+AGG + chr1_4:34977763-34977782 Msa0160960:CDS 60.0%
GGCTCTGCCTACATGTGGGT+TGG + chr1_4:34977895-34977914 Msa0160960:three_prime_UTR 60.0%
!! GGGGTACCGCGGGTAAAGGG+AGG + chr1_4:34975588-34975607 Msa0160960:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 34974665 34978177 34974665 ID=Msa0160960;Name=Msa0160960
chr1_4 mRNA 34974665 34978177 34974665 ID=Msa0160960-mRNA-1;Parent=Msa0160960;Name=Msa0160960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=358|1|1|1|1|1|2|332|223
chr1_4 exon 34974665 34975249 34974665 ID=Msa0160960-mRNA-1:exon:10608;Parent=Msa0160960-mRNA-1
chr1_4 exon 34977401 34978177 34977401 ID=Msa0160960-mRNA-1:exon:10609;Parent=Msa0160960-mRNA-1
chr1_4 five_prime_UTR 34974665 34975022 34974665 ID=Msa0160960-mRNA-1:five_prime_utr;Parent=Msa0160960-mRNA-1
chr1_4 CDS 34975023 34975249 34975023 ID=Msa0160960-mRNA-1:cds;Parent=Msa0160960-mRNA-1
chr1_4 CDS 34977401 34977845 34977401 ID=Msa0160960-mRNA-1:cds;Parent=Msa0160960-mRNA-1
chr1_4 three_prime_UTR 34977846 34978177 34977846 ID=Msa0160960-mRNA-1:three_prime_utr;Parent=Msa0160960-mRNA-1
Gene Sequence

>Msa0160960

ATGTCGAATTTATACGGTGATTATAATCAGAAGATCGATTACGTATTCAAAGTGGTGTTGATTGGTGATTCTGCCGTTGGAAAAACACAACTTCTTGCTCGTTTTTCGAGGAATCAATTTAACGTTGATTCTAAAGCTACAATTGGTGTTGAGTTTCAAACCAAAACTCTTGTTATTGATAATAAAACTGTTAAGGCTCAAATATGGGACACTGCTGGTCAAGAAAGGTACAGAGCAGTAACTAGTGCGTATTACCGTGGAGCTGTTGGAGCGATGTTAGTTTACGACATGACTAAGCGTCAATCATTTGATCACATGGCAAGATGGTTAGAGGAACTGAGGGGTCATGCAGACACAAATATTGTCATAATGCTAATTGGCAACAAGTGTGATTTGGGAACTCTAAAGGCAGTACCTACTGAAGATGCTCAGGAGTTTGCACAAAGAGAGAACCTTTTCTTTATGGAGACATCAGCACTAGAGTCCACTAATGTCGAAACCGCCTTTCTGACTATTCTAACAGAAATTTACCGACTTATCAGCAAAAAAACACTTACTGCCAATGATGAGGCAGATCCTGGTGGTGGTTCAGGGCTTCTGAAGGGAACCAGGATAATTGTTCCTAACCAAGATGCGAGTGCTTTTGAAAAGAAGGGTGGTTGCTGCGGATAA
Protein sequence

>Msa0160960

MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNQFNVDSKATIGVEFQTKTLVIDNKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADTNIVIMLIGNKCDLGTLKAVPTEDAQEFAQRENLFFMETSALESTNVETAFLTILTEIYRLISKKTLTANDEADPGGGSGLLKGTRIIVPNQDASAFEKKGGCCG*