Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877540 | XP_013451444.1 | 97.573 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 1.54e-146 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877540 | sp|P92792|TOM20_SOLTU | 74.611 | 193 | 48 | 1 | 5 | 197 | 4 | 195 | 1.30e-96 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877540 | A0A072U6U8 | 97.573 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 7.33e-147 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044890 | Msa0877540 | 0.802226 | 6.203448e-49 | -8.615850e-47 |
| Msa0068970 | Msa0877540 | 0.813871 | 2.055340e-51 | -8.615850e-47 |
| Msa0136400 | Msa0877540 | 0.816065 | 6.700290e-52 | -8.615850e-47 |
| Msa0486070 | Msa0877540 | 0.801006 | 1.103881e-48 | -8.615850e-47 |
| Msa0877540 | Msa0943180 | 0.901153 | 3.573527e-78 | -8.615850e-47 |
| Msa0877540 | Msa0979820 | 0.822625 | 2.143600e-53 | -8.615850e-47 |
| Msa0877540 | Msa1332230 | 0.812568 | 3.971775e-51 | -8.615850e-47 |
| Msa0877540 | Msa1344160 | 0.821304 | 4.334428e-53 | -8.615850e-47 |
| Msa0877540 | Msa1344190 | 0.828598 | 8.224813e-55 | -8.615850e-47 |
| Msa0877540 | Msa1433910 | 0.810712 | 1.005539e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877540 | MtrunA17_Chr6g0459751 | 97.573 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 1.41e-150 | 416 |
| Msa0877540 | MtrunA17_Chr3g0122551 | 58.416 | 202 | 84 | 0 | 1 | 202 | 1 | 202 | 6.27e-80 | 237 |
| Msa0877540 | MtrunA17_Chr6g0467501 | 40.000 | 200 | 81 | 2 | 1 | 166 | 1 | 195 | 8.10e-33 | 124 |
| Msa0877540 | MtrunA17_Chr6g0455921 | 42.767 | 159 | 67 | 3 | 21 | 163 | 8 | 158 | 3.59e-27 | 101 |
| Msa0877540 | MtrunA17_Chr6g0453351 | 36.628 | 172 | 94 | 4 | 7 | 167 | 6 | 173 | 2.05e-25 | 99.0 |
| Msa0877540 | MtrunA17_Chr7g0262471 | 36.364 | 176 | 97 | 3 | 1 | 162 | 1 | 175 | 1.26e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877540 | AT3G27080.1 | 59.701 | 201 | 75 | 2 | 5 | 202 | 4 | 201 | 2.79e-81 | 241 |
| Msa0877540 | AT1G27390.1 | 54.327 | 208 | 88 | 1 | 1 | 201 | 1 | 208 | 6.36e-81 | 240 |
| Msa0877540 | AT5G40930.1 | 57.071 | 198 | 70 | 4 | 1 | 198 | 1 | 183 | 5.95e-71 | 214 |
| Msa0877540 | AT3G27070.1 | 51.042 | 192 | 83 | 2 | 8 | 194 | 1 | 186 | 3.25e-60 | 187 |
| Msa0877540 | AT5G40930.2 | 63.768 | 138 | 47 | 2 | 1 | 138 | 1 | 135 | 9.17e-55 | 172 |
| Msa0877540 | AT1G27390.2 | 53.289 | 152 | 64 | 1 | 57 | 201 | 1 | 152 | 5.86e-53 | 167 |
| Msa0877540 | AT3G27070.2 | 47.482 | 139 | 62 | 2 | 61 | 194 | 114 | 246 | 4.10e-36 | 127 |
Find 81 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTGAGTTTCTAGGGTTT+TGG | 0.198070 | 6_1:+17011931 | None:intergenic |
| TTATGTTTAAGCCTAAATTT+TGG | 0.268925 | 6_1:-17007397 | Msa0877540:three_prime_UTR |
| TCTCAACAAAGCCAAAATTT+AGG | 0.274342 | 6_1:+17007386 | None:intergenic |
| CATACGATGAATAGGCTAAA+TGG | 0.303989 | 6_1:+17007645 | None:intergenic |
| CCAACAAGCATGACGCTCTT+TGG | 0.320617 | 6_1:-17009955 | Msa0877540:CDS |
| ACTTTAGCCTCGTCCACATC+TGG | 0.325905 | 6_1:+17009893 | None:intergenic |
| AGTGAATCAGAAATTTCATT+TGG | 0.336445 | 6_1:+17007548 | None:intergenic |
| TATTCCGTTCAATACTTGAT+TGG | 0.351775 | 6_1:+17007435 | None:intergenic |
| TCCATGGAATCTGAGTTTCT+AGG | 0.353221 | 6_1:+17011924 | None:intergenic |
| ATCAGCATCGAGAGGGTTCT+TGG | 0.367687 | 6_1:+17011830 | None:intergenic |
| TGGCTGTTGGCATTGTTACA+TGG | 0.380557 | 6_1:-17007829 | Msa0877540:CDS |
| CAAAGAGCGTCATGCTTGTT+GGG | 0.385130 | 6_1:+17009956 | None:intergenic |
| TATTTGATTTGATACATTGC+TGG | 0.394585 | 6_1:-17007745 | Msa0877540:three_prime_UTR |
| CCAAAGAGCGTCATGCTTGT+TGG | 0.403594 | 6_1:+17009955 | None:intergenic |
| GAAATACATAAGCATGGATT+AGG | 0.408868 | 6_1:-17008589 | Msa0877540:CDS |
| GAATGGTGCTTGGATGTAGA+AGG | 0.409752 | 6_1:-17007581 | Msa0877540:three_prime_UTR |
| TAAACTTCCATACGATGAAT+AGG | 0.416138 | 6_1:+17007637 | None:intergenic |
| CTGGAGGAGGTGGTGGTGGT+AGG | 0.421770 | 6_1:+17007786 | None:intergenic |
| GCATGACGCTCTTTGGTGCC+TGG | 0.428053 | 6_1:-17009948 | Msa0877540:CDS |
| CGTGGAGCTGGAGGAGGTGG+TGG | 0.435306 | 6_1:+17007779 | None:intergenic |
| CGAACTCTACCGCAAATCAT+TGG | 0.437270 | 6_1:-17009718 | Msa0877540:CDS |
| CCATGGAATCTGAGTTTCTA+GGG | 0.438373 | 6_1:+17011925 | None:intergenic |
| GGAGCTGGAGGAGGTGGTGG+TGG | 0.438402 | 6_1:+17007782 | None:intergenic |
| CAATACTTGATTGGTAACTT+TGG | 0.446493 | 6_1:+17007444 | None:intergenic |
| CTCTGCAGAATTTGACAAGA+TGG | 0.446686 | 6_1:-17010674 | Msa0877540:intron |
| TTCAGATGCTATTTCAAAGC+TGG | 0.452976 | 6_1:-17009999 | Msa0877540:intron |
| GCTGGTCCATCTTCTTCTGC+TGG | 0.453164 | 6_1:-17008547 | Msa0877540:CDS |
| GTTGGCATTGTTACATGGGT+GGG | 0.459171 | 6_1:-17007824 | Msa0877540:CDS |
| GGCTGTTGGCATTGTTACAT+GGG | 0.462217 | 6_1:-17007828 | Msa0877540:CDS |
| TTCGTTCTGTTGCAAATCCA+TGG | 0.462675 | 6_1:+17011908 | None:intergenic |
| AGGGTCATCTTCTTTGACTC+GGG | 0.469648 | 6_1:+17010612 | None:intergenic |
| CAGCCACTTCCAATGATTTG+CGG | 0.472358 | 6_1:+17009709 | None:intergenic |
| CCCTAGAAACTCAGATTCCA+TGG | 0.472505 | 6_1:-17011925 | Msa0877540:exon |
| CATGACGCTCTTTGGTGCCT+GGG | 0.480309 | 6_1:-17009947 | Msa0877540:CDS |
| TTGCGGTAGAGTTCGTTTGA+AGG | 0.482619 | 6_1:+17009726 | None:intergenic |
| AACGGAATAATTTGTTGCCA+AGG | 0.489129 | 6_1:-17007421 | Msa0877540:three_prime_UTR |
| ATCATTGGAAGTGGCTGCTA+AGG | 0.490666 | 6_1:-17009703 | Msa0877540:intron |
| AGCTTCGCTTATCGTGGAGC+TGG | 0.491164 | 6_1:+17007767 | None:intergenic |
| CATTTAGCCTATTCATCGTA+TGG | 0.497941 | 6_1:-17007644 | Msa0877540:three_prime_UTR |
| TGCTATTTCAAAGCTGGAGG+AGG | 0.506923 | 6_1:-17009993 | Msa0877540:CDS |
| TGTTGGCATTGTTACATGGG+TGG | 0.507942 | 6_1:-17007825 | Msa0877540:CDS |
| GAATCAGAAATTTCATTTGG+AGG | 0.508073 | 6_1:+17007551 | None:intergenic |
| TATCGTGGAGCTGGAGGAGG+TGG | 0.508794 | 6_1:+17007776 | None:intergenic |
| TTAGGCTTAAACATAAACCT+TGG | 0.509913 | 6_1:+17007404 | None:intergenic |
| ATCTTCTTCTGCTGGTACAA+AGG | 0.513193 | 6_1:-17008539 | Msa0877540:intron |
| TCTGCAGAATTTGACAAGAT+GGG | 0.521349 | 6_1:-17010673 | Msa0877540:intron |
| CATACTTGGATGGGTAATCC+TGG | 0.525797 | 6_1:-17007849 | Msa0877540:CDS |
| CTTTAGCCTCGTCCACATCT+GGG | 0.526481 | 6_1:+17009894 | None:intergenic |
| AAGGGTCATCTTCTTTGACT+CGG | 0.533813 | 6_1:+17010611 | None:intergenic |
| GCTTATCGTGGAGCTGGAGG+AGG | 0.534256 | 6_1:+17007773 | None:intergenic |
| GTGAAGTGAGAGCATTTCCC+AGG | 0.534970 | 6_1:+17009930 | None:intergenic |
| TGAAGTATGACATACTTGGA+TGG | 0.544169 | 6_1:-17007859 | Msa0877540:CDS |
| GGGAAATGCTCTCACTTCAC+AGG | 0.545457 | 6_1:-17009927 | Msa0877540:CDS |
| CTACCGCAAATCATTGGAAG+TGG | 0.545747 | 6_1:-17009712 | Msa0877540:CDS |
| TTTGTACCAGCAGAAGAAGA+TGG | 0.553639 | 6_1:+17008541 | None:intergenic |
| TGTATTTCTACATGTAACTC+AGG | 0.554033 | 6_1:+17008604 | None:intergenic |
| CAGCAAGCAGTAGAGGCAGC+TGG | 0.555623 | 6_1:-17008565 | Msa0877540:CDS |
| TTCGCTTATCGTGGAGCTGG+AGG | 0.566194 | 6_1:+17007770 | None:intergenic |
| GAAGTATGACATACTTGGAT+GGG | 0.568545 | 6_1:-17007858 | Msa0877540:CDS |
| ATGTAACAATGCCAACAGCC+AGG | 0.573417 | 6_1:+17007831 | None:intergenic |
| ATTAGGTCAGCAAGCAGTAG+AGG | 0.574544 | 6_1:-17008572 | Msa0877540:CDS |
| TATATACAAAGACATGAGCT+AGG | 0.575618 | 6_1:+17007476 | None:intergenic |
| AGATGCTATTTCAAAGCTGG+AGG | 0.576638 | 6_1:-17009996 | Msa0877540:CDS |
| GGATGGGTAATCCTGGCTGT+TGG | 0.576660 | 6_1:-17007842 | Msa0877540:CDS |
| GAGTCAAAGAAGATGACCCT+TGG | 0.580952 | 6_1:-17010609 | Msa0877540:intron |
| CAGAATTTGACAAGATGGGG+TGG | 0.587171 | 6_1:-17010669 | Msa0877540:CDS |
| TTTAAACCCAGATGTGGACG+AGG | 0.591013 | 6_1:-17009900 | Msa0877540:CDS |
| TCAAATAGCTTCGCTTATCG+TGG | 0.591851 | 6_1:+17007761 | None:intergenic |
| CATGTAGAAATACATAAGCA+TGG | 0.592725 | 6_1:-17008595 | Msa0877540:CDS |
| CTTTCAACAAGCTGTTGATG+AGG | 0.593601 | 6_1:-17009846 | Msa0877540:intron |
| CTGCAGAATTTGACAAGATG+GGG | 0.603692 | 6_1:-17010672 | Msa0877540:intron |
| CTTGGTGTATTCAGCTTCAG+CGG | 0.606207 | 6_1:+17011848 | None:intergenic |
| GACTGACATCAGCATCGAGA+GGG | 0.609421 | 6_1:+17011823 | None:intergenic |
| GTTACCAATCAAGTATTGAA+CGG | 0.614446 | 6_1:-17007439 | Msa0877540:three_prime_UTR |
| TTGAGTTGAGTAGCTATGAA+TGG | 0.618091 | 6_1:-17007598 | Msa0877540:three_prime_UTR |
| GATATGAAGTATGACATACT+TGG | 0.620697 | 6_1:-17007863 | Msa0877540:CDS |
| AATGGTGCTTGGATGTAGAA+GGG | 0.633906 | 6_1:-17007580 | Msa0877540:three_prime_UTR |
| GAGTAGCTATGAATGGTGCT+TGG | 0.640579 | 6_1:-17007591 | Msa0877540:three_prime_UTR |
| GGCTAAAGTTTACTTTGACA+AGG | 0.646740 | 6_1:-17009879 | Msa0877540:CDS |
| ATGGTGCTTGGATGTAGAAG+GGG | 0.694156 | 6_1:-17007579 | Msa0877540:three_prime_UTR |
| AGACTGACATCAGCATCGAG+AGG | 0.704805 | 6_1:+17011822 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTATTGTATAATCTT+TGG | - | chr6_1:17008112-17008131 | Msa0877540:intron | 10.0% |
| !!! | TTATTATGTTTCATTTTAAA+TGG | - | chr6_1:17010184-17010203 | Msa0877540:intron | 10.0% |
| !! | AAAAAAAAATAGGGAAAAAT+TGG | + | chr6_1:17007562-17007581 | None:intergenic | 15.0% |
| !!! | GAAATTTTGTTTGTAATTTT+TGG | - | chr6_1:17007769-17007788 | Msa0877540:exon | 15.0% |
| !!! | GAAATTTTGTGTATAATTTT+TGG | - | chr6_1:17007830-17007849 | Msa0877540:CDS | 15.0% |
| !!! | TATAATTTTTGGAATTCTTT+TGG | - | chr6_1:17008255-17008274 | Msa0877540:intron | 15.0% |
| !!! | TATAGTTTTTTGAATGTTTT+TGG | - | chr6_1:17008481-17008500 | Msa0877540:intron | 15.0% |
| !! | AACAAAATAGTAAAAACAAA+AGG | + | chr6_1:17008882-17008901 | None:intergenic | 15.0% |
| !!! | TTACATGTGTTTTTATTAAA+CGG | - | chr6_1:17008910-17008929 | Msa0877540:intron | 15.0% |
| !!! | TTTTTACTACTATAAATCTA+TGG | - | chr6_1:17009953-17009972 | Msa0877540:CDS | 15.0% |
| !!! | TAAAAGAAATAAGGTTTTAA+AGG | + | chr6_1:17010387-17010406 | None:intergenic | 15.0% |
| !!! | TGCATATTTTAAAAGAAATA+AGG | + | chr6_1:17010396-17010415 | None:intergenic | 15.0% |
| !!! | ACAAAAAATCTGATTTTTTC+TGG | + | chr6_1:17007714-17007733 | None:intergenic | 20.0% |
| !!! | ATATAGATGAATTTTTGTGT+TGG | - | chr6_1:17007747-17007766 | Msa0877540:three_prime_UTR | 20.0% |
| !!! | GTAATTTTTGGAATTCTTTT+TGG | - | chr6_1:17007781-17007800 | Msa0877540:CDS | 20.0% |
| !!! | CAAAATTTGTGTATAGTTTT+TGG | - | chr6_1:17007879-17007898 | Msa0877540:CDS | 20.0% |
| !!! | TGTATAATTTTTCGTACATA+TGG | - | chr6_1:17008073-17008092 | Msa0877540:intron | 20.0% |
| !! | TGTATAATCTTTGGTATATA+TGG | - | chr6_1:17008121-17008140 | Msa0877540:intron | 20.0% |
| !!! | ATATTTGTGTTGCAAATTTT+TGG | - | chr6_1:17008195-17008214 | Msa0877540:intron | 20.0% |
| !!! | ATAATTTCTGGAAATTTTGT+TGG | - | chr6_1:17008378-17008397 | Msa0877540:intron | 20.0% |
| !!! | TGGAATTTGTGTATAATTTT+TGG | - | chr6_1:17008586-17008605 | Msa0877540:CDS | 20.0% |
| !!! | GAAATTTTGTGTATAACTTT+TGG | - | chr6_1:17008644-17008663 | Msa0877540:intron | 20.0% |
| !!! | TTAGCTGTGTTTTTATTAAA+TGG | - | chr6_1:17008827-17008846 | Msa0877540:intron | 20.0% |
| !!! | GATTTTTTCAAGTCAAAATA+GGG | + | chr6_1:17009096-17009115 | None:intergenic | 20.0% |
| !!! | AGATTTTTTCAAGTCAAAAT+AGG | + | chr6_1:17009097-17009116 | None:intergenic | 20.0% |
| !!! | GAGTGTTTTTTGTTTTATAT+AGG | - | chr6_1:17009607-17009626 | Msa0877540:intron | 20.0% |
| !!! | TTTTTTATCATATTGTCATG+CGG | - | chr6_1:17009698-17009717 | Msa0877540:intron | 20.0% |
| !!! | TTTTCCATCTGTTTTATTTA+TGG | - | chr6_1:17009733-17009752 | Msa0877540:intron | 20.0% |
| !! | AAAACAAAGACATAAAAACA+GGG | + | chr6_1:17010292-17010311 | None:intergenic | 20.0% |
| !! | AAAAACAAAGACATAAAAAC+AGG | + | chr6_1:17010293-17010312 | None:intergenic | 20.0% |
| !!! | TTTCCTTTATACCTTTTTTT+AGG | - | chr6_1:17010729-17010748 | Msa0877540:intron | 20.0% |
| !! | AACAAAAATATATACTACGA+GGG | + | chr6_1:17010964-17010983 | None:intergenic | 20.0% |
| !! | TGGAAATAACCAAATAAATT+AGG | + | chr6_1:17011450-17011469 | None:intergenic | 20.0% |
| !! | AAAAACAAAATATTAAGTGG+CGG | + | chr6_1:17011665-17011684 | None:intergenic | 20.0% |
| !! | GTCAAAAACAAAATATTAAG+TGG | + | chr6_1:17011668-17011687 | None:intergenic | 20.0% |
| !!! | TTATGTTTAAGCCTAAATTT+TGG | - | chr6_1:17011961-17011980 | Msa0877540:five_prime_UTR | 20.0% |
| ! | AGATTTCAACTTTCTTATGA+TGG | - | chr6_1:17007626-17007645 | Msa0877540:three_prime_UTR | 25.0% |
| ! | GATTTCAACTTTCTTATGAT+GGG | - | chr6_1:17007627-17007646 | Msa0877540:three_prime_UTR | 25.0% |
| !!! | GTATAATTTTTGGTACACAA+AGG | - | chr6_1:17007840-17007859 | Msa0877540:CDS | 25.0% |
| !!! | TATAGTTTTTGGTGTTGTAT+TGG | - | chr6_1:17007890-17007909 | Msa0877540:CDS | 25.0% |
| !! | GAAATTTTGTGCATAATGTT+TGG | - | chr6_1:17007912-17007931 | Msa0877540:intron | 25.0% |
| !! | ATAATGTTTGGTAGTTGTAT+TGG | - | chr6_1:17007924-17007943 | Msa0877540:intron | 25.0% |
| !! | GAGATTTTGTGTATAATGTT+TGG | - | chr6_1:17007946-17007965 | Msa0877540:intron | 25.0% |
| ! | TGTATAATTCTTGGAACATA+TGG | - | chr6_1:17008168-17008187 | Msa0877540:intron | 25.0% |
| !! | GCAGATTTGTGTATAATTTT+TGG | - | chr6_1:17008244-17008263 | Msa0877540:intron | 25.0% |
| !!! | AAAATTTTCTGAGATGGTTT+TGG | - | chr6_1:17008320-17008339 | Msa0877540:intron | 25.0% |
| !!! | TGATTTTTGGAATTTGTTTC+TGG | - | chr6_1:17008540-17008559 | Msa0877540:CDS | 25.0% |
| ! | ATATAAATGAGTTGTTGTGT+TGG | - | chr6_1:17008566-17008585 | Msa0877540:CDS | 25.0% |
| !! | TGGAAATTCTTTTAGACATA+TGG | - | chr6_1:17008606-17008625 | Msa0877540:CDS | 25.0% |
| ! | ATTGTAAAAACAAAGAGACT+AGG | + | chr6_1:17008793-17008812 | None:intergenic | 25.0% |
| ! | TAGTAAAAACAAAAGGACAA+GGG | + | chr6_1:17008875-17008894 | None:intergenic | 25.0% |
| ! | ATAGTAAAAACAAAAGGACA+AGG | + | chr6_1:17008876-17008895 | None:intergenic | 25.0% |
| !! | AACAGAAATAACAGTGTTTT+TGG | + | chr6_1:17009128-17009147 | None:intergenic | 25.0% |
| ! | ACTTCCATAAATAAAACAGA+TGG | + | chr6_1:17009740-17009759 | None:intergenic | 25.0% |
| !!! | AATGACAATCGTAATTTGTT+TGG | - | chr6_1:17009784-17009803 | Msa0877540:intron | 25.0% |
| !! | TATTGATTATCCTTATAAGC+TGG | + | chr6_1:17009897-17009916 | None:intergenic | 25.0% |
| ! | ATAAGTGTTCCTTGAAAATA+AGG | - | chr6_1:17009914-17009933 | Msa0877540:CDS | 25.0% |
| ! | TAAATCTATGGTCATAGAAA+AGG | - | chr6_1:17009965-17009984 | Msa0877540:CDS | 25.0% |
| ! | AAACAAAGACATAAAAACAG+GGG | + | chr6_1:17010291-17010310 | None:intergenic | 25.0% |
| !!! | GAAATAAGGTTTTAAAGGTT+GGG | + | chr6_1:17010382-17010401 | None:intergenic | 25.0% |
| !!! | AGAAATAAGGTTTTAAAGGT+TGG | + | chr6_1:17010383-17010402 | None:intergenic | 25.0% |
| ! | AAGATTCACAATAGAACTAA+AGG | + | chr6_1:17010657-17010676 | None:intergenic | 25.0% |
| !! | ACTTTGATATCGTTTTCTAT+TGG | - | chr6_1:17010883-17010902 | Msa0877540:intron | 25.0% |
| ! | ACAAAAATATATACTACGAG+GGG | + | chr6_1:17010963-17010982 | None:intergenic | 25.0% |
| ! | CAACAAAAATATATACTACG+AGG | + | chr6_1:17010965-17010984 | None:intergenic | 25.0% |
| !!! | TAGAACAGTTTGTTGTTTTT+CGG | - | chr6_1:17011096-17011115 | Msa0877540:intron | 25.0% |
| ! | ACTCTATCTTGACAATATTA+CGG | + | chr6_1:17011157-17011176 | None:intergenic | 25.0% |
| ! | CGGAAAAAAATGCATTAATA+GGG | + | chr6_1:17011304-17011323 | None:intergenic | 25.0% |
| ! | ACGGAAAAAAATGCATTAAT+AGG | + | chr6_1:17011305-17011324 | None:intergenic | 25.0% |
| !! | TCTTCGTTTTATCTTTTCTA+CGG | + | chr6_1:17011324-17011343 | None:intergenic | 25.0% |
| ! | AGAAACTCACCTAATTTATT+TGG | - | chr6_1:17011438-17011457 | Msa0877540:intron | 25.0% |
| !!! | TTTTCTTTTTCTTTTGAGTC+TGG | + | chr6_1:17011470-17011489 | None:intergenic | 25.0% |
| !!! | TATTTGATTTGATACATTGC+TGG | - | chr6_1:17011613-17011632 | Msa0877540:intron | 25.0% |
| ! | AGTGAATCAGAAATTTCATT+TGG | + | chr6_1:17011813-17011832 | None:intergenic | 25.0% |
| TTTGATTGATGTTGTGTCTA+TGG | - | chr6_1:17007665-17007684 | Msa0877540:three_prime_UTR | 30.0% | |
| TTGATTGATGTTGTGTCTAT+GGG | - | chr6_1:17007666-17007685 | Msa0877540:three_prime_UTR | 30.0% | |
| !! | TATGAATGAGTTTGTTGTGT+TGG | - | chr6_1:17007808-17007827 | Msa0877540:CDS | 30.0% |
| ! | TTTGGTTCATATGCTTATGT+TGG | - | chr6_1:17007964-17007983 | Msa0877540:intron | 30.0% |
| !! | TTTTTGATTAGTTGTTGTGC+TGG | - | chr6_1:17008002-17008021 | Msa0877540:intron | 30.0% |
| TACACAATATCTACACAACT+AGG | + | chr6_1:17008057-17008076 | None:intergenic | 30.0% | |
| GCAAATCTGTGTATAATTCT+TGG | - | chr6_1:17008159-17008178 | Msa0877540:intron | 30.0% | |
| ATAATTCTTGGAACATATGG+AGG | - | chr6_1:17008171-17008190 | Msa0877540:intron | 30.0% | |
| !! | CTGCTTAAAATTTTCTGAGA+TGG | - | chr6_1:17008314-17008333 | Msa0877540:intron | 30.0% |
| ATATGAATGAGTTGTTGTGT+TGG | - | chr6_1:17008346-17008365 | Msa0877540:intron | 30.0% | |
| ! | GGAAATTTTGTTGGTACATA+TGG | - | chr6_1:17008387-17008406 | Msa0877540:intron | 30.0% |
| ! | TGGAAATTGCGTATAGTTTT+TGG | - | chr6_1:17008424-17008443 | Msa0877540:intron | 30.0% |
| !!! | CGTATAGTTTTTGGTACATA+TGG | - | chr6_1:17008433-17008452 | Msa0877540:intron | 30.0% |
| !!! | CATATGGTGAGTTGTTATTT+TGG | - | chr6_1:17008622-17008641 | Msa0877540:intron | 30.0% |
| ATATAGAGAATAAGCACCAA+GGG | + | chr6_1:17008768-17008787 | None:intergenic | 30.0% | |
| AATGGTTCTTGTGTTATGTT+TGG | - | chr6_1:17008845-17008864 | Msa0877540:intron | 30.0% | |
| TATTTCCCCGTATCATTATA+TGG | + | chr6_1:17009030-17009049 | None:intergenic | 30.0% | |
| !! | ATTTTGAGTCAGAATCACTA+AGG | - | chr6_1:17009180-17009199 | Msa0877540:intron | 30.0% |
| AGTCGTTTGATTGTATCTAA+TGG | - | chr6_1:17009213-17009232 | Msa0877540:intron | 30.0% | |
| !!! | GAACATTCGTTTGTTTTTTG+TGG | - | chr6_1:17009314-17009333 | Msa0877540:intron | 30.0% |
| TGGATTTCTCACTTGAAATT+TGG | - | chr6_1:17009334-17009353 | Msa0877540:intron | 30.0% | |
| AGGTATGTTCAGTGATTTAA+TGG | - | chr6_1:17009675-17009694 | Msa0877540:intron | 30.0% | |
| GTCATTTCTATATTACAGTG+AGG | + | chr6_1:17009770-17009789 | None:intergenic | 30.0% | |
| ! | TGAGAAACCTAACATCTTTT+TGG | - | chr6_1:17009813-17009832 | Msa0877540:intron | 30.0% |
| ! | GAGAAACCTAACATCTTTTT+GGG | - | chr6_1:17009814-17009833 | Msa0877540:intron | 30.0% |
| ! | ATTTTGTGTTCCCTTATTGA+AGG | - | chr6_1:17009844-17009863 | Msa0877540:intron | 30.0% |
| TATAAGCTGGTCATCTTAAA+CGG | + | chr6_1:17009884-17009903 | None:intergenic | 30.0% | |
| ! | TTTAAGATGACCAGCTTATA+AGG | - | chr6_1:17009884-17009903 | Msa0877540:CDS | 30.0% |
| !!! | AACACAAGTCCTTATTTTCA+AGG | + | chr6_1:17009926-17009945 | None:intergenic | 30.0% |
| ATAACGCAATTACAACTACA+TGG | + | chr6_1:17010168-17010187 | None:intergenic | 30.0% | |
| GCAAGCAATTAAGATTAAAG+CGG | - | chr6_1:17010339-17010358 | Msa0877540:intron | 30.0% | |
| TAAAGGTTCAGTTTCTAAAC+AGG | + | chr6_1:17010457-17010476 | None:intergenic | 30.0% | |
| GTAAGGGAACAAAAGAATAA+AGG | + | chr6_1:17010474-17010493 | None:intergenic | 30.0% | |
| AGTAGTCGACATATACAAAA+GGG | + | chr6_1:17010524-17010543 | None:intergenic | 30.0% | |
| AAGTAGTCGACATATACAAA+AGG | + | chr6_1:17010525-17010544 | None:intergenic | 30.0% | |
| !! | TGTATATGTCGACTACTTTT+AGG | - | chr6_1:17010527-17010546 | Msa0877540:intron | 30.0% |
| AGTTCAGCATAAAAGAAAGA+TGG | + | chr6_1:17010558-17010577 | None:intergenic | 30.0% | |
| ! | ATCTTTCTTTTATGCTGAAC+TGG | - | chr6_1:17010557-17010576 | Msa0877540:intron | 30.0% |
| !!! | GTGTTTTGGTTTTTGTAGTT+TGG | - | chr6_1:17010593-17010612 | Msa0877540:intron | 30.0% |
| ! | TTTTTGTAGTTTGGTCTCTT+GGG | - | chr6_1:17010602-17010621 | Msa0877540:intron | 30.0% |
| ! | GAGCCTAAAAAAAGGTATAA+AGG | + | chr6_1:17010735-17010754 | None:intergenic | 30.0% |
| ! | TGTATTTCTACATGTAACTC+AGG | + | chr6_1:17010757-17010776 | None:intergenic | 30.0% |
| CATGTAGAAATACATAAGCA+TGG | - | chr6_1:17010763-17010782 | Msa0877540:intron | 30.0% | |
| GAAATACATAAGCATGGATT+AGG | - | chr6_1:17010769-17010788 | Msa0877540:intron | 30.0% | |
| CAAAAATATATACTACGAGG+GGG | + | chr6_1:17010962-17010981 | None:intergenic | 30.0% | |
| GTCAAGATAGAGTAGTAATT+AGG | - | chr6_1:17011164-17011183 | Msa0877540:intron | 30.0% | |
| !!! | ATTAGGTGACTTTGTTGTTT+TGG | - | chr6_1:17011181-17011200 | Msa0877540:intron | 30.0% |
| !!! | TTGTTTTGGACACGTTTTAT+GGG | - | chr6_1:17011195-17011214 | Msa0877540:intron | 30.0% |
| ACACACAGATACACTAATTA+TGG | + | chr6_1:17011267-17011286 | None:intergenic | 30.0% | |
| AAAACGAAGAACTATTCGTA+AGG | - | chr6_1:17011334-17011353 | Msa0877540:intron | 30.0% | |
| GATATGAAGTATGACATACT+TGG | - | chr6_1:17011495-17011514 | Msa0877540:intron | 30.0% | |
| ! | GACTGTTGTAATGTTTTTCA+AGG | - | chr6_1:17011685-17011704 | Msa0877540:intron | 30.0% |
| TAAACTTCCATACGATGAAT+AGG | + | chr6_1:17011724-17011743 | None:intergenic | 30.0% | |
| GAATCAGAAATTTCATTTGG+AGG | + | chr6_1:17011810-17011829 | None:intergenic | 30.0% | |
| TATATACAAAGACATGAGCT+AGG | + | chr6_1:17011885-17011904 | None:intergenic | 30.0% | |
| ! | CAATACTTGATTGGTAACTT+TGG | + | chr6_1:17011917-17011936 | None:intergenic | 30.0% |
| !! | GTTACCAATCAAGTATTGAA+CGG | - | chr6_1:17011919-17011938 | Msa0877540:exon | 30.0% |
| TATTCCGTTCAATACTTGAT+TGG | + | chr6_1:17011926-17011945 | None:intergenic | 30.0% | |
| TTAGGCTTAAACATAAACCT+TGG | + | chr6_1:17011957-17011976 | None:intergenic | 30.0% | |
| !!! | ATCTGAGTTTCTAGGGTTTT+GGG | + | chr6_1:17007429-17007448 | None:intergenic | 35.0% |
| !!! | AATCTGAGTTTCTAGGGTTT+TGG | + | chr6_1:17007430-17007449 | None:intergenic | 35.0% |
| !!! | TCTATGGGTGTTTTGTTGTT+AGG | - | chr6_1:17007681-17007700 | Msa0877540:three_prime_UTR | 35.0% |
| ! | TGGAATTCTTTTGGTACGTA+TGG | - | chr6_1:17008264-17008283 | Msa0877540:intron | 35.0% |
| TGGAAGTGGTGTATAATTTC+TGG | - | chr6_1:17008366-17008385 | Msa0877540:intron | 35.0% | |
| TTGGTACATATGGATGTTCT+TGG | - | chr6_1:17008443-17008462 | Msa0877540:intron | 35.0% | |
| !!! | AATGTTTTTGGTACGTACAG+AGG | - | chr6_1:17008493-17008512 | Msa0877540:intron | 35.0% |
| TCTGCAGAATTTGACAAGAT+GGG | - | chr6_1:17008685-17008704 | Msa0877540:intron | 35.0% | |
| CATATAGAGAATAAGCACCA+AGG | + | chr6_1:17008769-17008788 | None:intergenic | 35.0% | |
| TGTTTGGACTTGTGTTTAGA+GGG | - | chr6_1:17008944-17008963 | Msa0877540:intron | 35.0% | |
| ATTCTTCACGCTTCTTCTAT+AGG | + | chr6_1:17008998-17009017 | None:intergenic | 35.0% | |
| TTAGGGGCCATATAATGATA+CGG | - | chr6_1:17009020-17009039 | Msa0877540:intron | 35.0% | |
| AACTTAAGATGATATGCTGC+AGG | + | chr6_1:17009072-17009091 | None:intergenic | 35.0% | |
| ATATTCTGACTGCAGCAAAT+CGG | - | chr6_1:17009265-17009284 | Msa0877540:intron | 35.0% | |
| !! | TTCAGATGCTATTTCAAAGC+TGG | - | chr6_1:17009359-17009378 | Msa0877540:intron | 35.0% |
| GGCTAAAGTTTACTTTGACA+AGG | - | chr6_1:17009479-17009498 | Msa0877540:intron | 35.0% | |
| GTACAGTATCATTGAAGTGT+GGG | - | chr6_1:17009534-17009553 | Msa0877540:intron | 35.0% | |
| GGAACTGAAAATTCAAAACC+CGG | + | chr6_1:17010035-17010054 | None:intergenic | 35.0% | |
| ! | ATATCCAGCTTTGTAAAGCA+TGG | + | chr6_1:17010056-17010075 | None:intergenic | 35.0% |
| CGATCAACAGATTAGAGTAA+GGG | + | chr6_1:17010490-17010509 | None:intergenic | 35.0% | |
| CCTTACTCTAATCTGTTGAT+CGG | - | chr6_1:17010488-17010507 | Msa0877540:intron | 35.0% | |
| ! | GTCTTTCTCTGTATGTGTTT+TGG | - | chr6_1:17010579-17010598 | Msa0877540:intron | 35.0% |
| ! | GTTTTTGTAGTTTGGTCTCT+TGG | - | chr6_1:17010601-17010620 | Msa0877540:intron | 35.0% |
| AACTAAAGGATGCATGAGAA+TGG | + | chr6_1:17010643-17010662 | None:intergenic | 35.0% | |
| TAACTCAGGAGCCTAAAAAA+AGG | + | chr6_1:17010743-17010762 | None:intergenic | 35.0% | |
| GAACTACTGTTACTAAGTGT+CGG | + | chr6_1:17011007-17011026 | None:intergenic | 35.0% | |
| !!! | GTTGTTTTGGACACGTTTTA+TGG | - | chr6_1:17011194-17011213 | Msa0877540:intron | 35.0% |
| ! | GTTTTATGGGATGAGTTTGT+AGG | - | chr6_1:17011208-17011227 | Msa0877540:intron | 35.0% |
| TTGTCAGATCTTGAGATCAA+TGG | - | chr6_1:17011358-17011377 | Msa0877540:intron | 35.0% | |
| TGAAGTATGACATACTTGGA+TGG | - | chr6_1:17011499-17011518 | Msa0877540:intron | 35.0% | |
| GAAGTATGACATACTTGGAT+GGG | - | chr6_1:17011500-17011519 | Msa0877540:intron | 35.0% | |
| CATACGATGAATAGGCTAAA+TGG | + | chr6_1:17011716-17011735 | None:intergenic | 35.0% | |
| CATTTAGCCTATTCATCGTA+TGG | - | chr6_1:17011714-17011733 | Msa0877540:intron | 35.0% | |
| !! | TTGAGTTGAGTAGCTATGAA+TGG | - | chr6_1:17011760-17011779 | Msa0877540:intron | 35.0% |
| !! | AACGGAATAATTTGTTGCCA+AGG | - | chr6_1:17011937-17011956 | Msa0877540:five_prime_UTR | 35.0% |
| CCATGGAATCTGAGTTTCTA+GGG | + | chr6_1:17007436-17007455 | None:intergenic | 40.0% | |
| TCCATGGAATCTGAGTTTCT+AGG | + | chr6_1:17007437-17007456 | None:intergenic | 40.0% | |
| TTCGTTCTGTTGCAAATCCA+TGG | + | chr6_1:17007453-17007472 | None:intergenic | 40.0% | |
| ATGAGTTGTTGTGTTGGAAG+TGG | - | chr6_1:17008352-17008371 | Msa0877540:intron | 40.0% | |
| ! | TGGTACATATGGTTGAGTTG+TGG | - | chr6_1:17008398-17008417 | Msa0877540:intron | 40.0% |
| ! | ATATGGTTGAGTTGTGGTGT+TGG | - | chr6_1:17008404-17008423 | Msa0877540:intron | 40.0% |
| ! | TGGAGGTTGTGTGTGATTTT+TGG | - | chr6_1:17008527-17008546 | Msa0877540:intron | 40.0% |
| CTCTGCAGAATTTGACAAGA+TGG | - | chr6_1:17008684-17008703 | Msa0877540:intron | 40.0% | |
| CTGCAGAATTTGACAAGATG+GGG | - | chr6_1:17008686-17008705 | Msa0877540:intron | 40.0% | |
| AAGGGTCATCTTCTTTGACT+CGG | + | chr6_1:17008750-17008769 | None:intergenic | 40.0% | |
| ! | AACGGTTTTTGTGTCGTGTT+TGG | - | chr6_1:17008928-17008947 | Msa0877540:intron | 40.0% |
| GTGTTTGGACTTGTGTTTAG+AGG | - | chr6_1:17008943-17008962 | Msa0877540:intron | 40.0% | |
| GTTTGGACTTGTGTTTAGAG+GGG | - | chr6_1:17008945-17008964 | Msa0877540:intron | 40.0% | |
| ! | AAGAAGCGTGAAGAATGCTT+AGG | - | chr6_1:17009002-17009021 | Msa0877540:intron | 40.0% |
| ! | AGAAGCGTGAAGAATGCTTA+GGG | - | chr6_1:17009003-17009022 | Msa0877540:intron | 40.0% |
| TAGGGGCCATATAATGATAC+GGG | - | chr6_1:17009021-17009040 | Msa0877540:intron | 40.0% | |
| TATTCTGACTGCAGCAAATC+GGG | - | chr6_1:17009266-17009285 | Msa0877540:intron | 40.0% | |
| !! | AGATGCTATTTCAAAGCTGG+AGG | - | chr6_1:17009362-17009381 | Msa0877540:intron | 40.0% |
| ! | GGCATTTTTAAACCCAGATG+TGG | - | chr6_1:17009452-17009471 | Msa0877540:intron | 40.0% |
| CTTTCAACAAGCTGTTGATG+AGG | - | chr6_1:17009512-17009531 | Msa0877540:intron | 40.0% | |
| GGTACAGTATCATTGAAGTG+TGG | - | chr6_1:17009533-17009552 | Msa0877540:intron | 40.0% | |
| ACTCGACCCAAAAAGATGTT+AGG | + | chr6_1:17009823-17009842 | None:intergenic | 40.0% | |
| CCAGTGAACTCCTTCAATAA+GGG | + | chr6_1:17009857-17009876 | None:intergenic | 40.0% | |
| TCCAGTGAACTCCTTCAATA+AGG | + | chr6_1:17009858-17009877 | None:intergenic | 40.0% | |
| GGTCATAGAAAAGGAATGAC+TGG | - | chr6_1:17009974-17009993 | Msa0877540:CDS | 40.0% | |
| GAACATGTACCTCGTTGAAA+AGG | + | chr6_1:17010005-17010024 | None:intergenic | 40.0% | |
| AGGTACATGTTCGATTAGAC+CGG | - | chr6_1:17010013-17010032 | Msa0877540:intron | 40.0% | |
| AGTTCCATGCTTTACAAAGC+TGG | - | chr6_1:17010049-17010068 | Msa0877540:intron | 40.0% | |
| TTTGCAAACCACAGCACAAT+GGG | + | chr6_1:17010083-17010102 | None:intergenic | 40.0% | |
| TTGCAGATGAGATGTGATTC+TGG | + | chr6_1:17010221-17010240 | None:intergenic | 40.0% | |
| ! | AAACAGGGGTTTTTCATCCT+AGG | + | chr6_1:17010277-17010296 | None:intergenic | 40.0% |
| AAAGGTTGGGACTCTTTAAC+AGG | + | chr6_1:17010369-17010388 | None:intergenic | 40.0% | |
| AAACAGGAAGGCAGATCAAA+AGG | + | chr6_1:17010441-17010460 | None:intergenic | 40.0% | |
| GGTTCAGTTTCTAAACAGGA+AGG | + | chr6_1:17010453-17010472 | None:intergenic | 40.0% | |
| CCGATCAACAGATTAGAGTA+AGG | + | chr6_1:17010491-17010510 | None:intergenic | 40.0% | |
| TTTGTACCAGCAGAAGAAGA+TGG | + | chr6_1:17010820-17010839 | None:intergenic | 40.0% | |
| ATCTTCTTCTGCTGGTACAA+AGG | - | chr6_1:17010819-17010838 | Msa0877540:intron | 40.0% | |
| ! | TTGAGATCAATGGTTCTGTC+TGG | - | chr6_1:17011368-17011387 | Msa0877540:intron | 40.0% |
| ! | TCTGGTTTCTTGTTGGATCT+TGG | - | chr6_1:17011386-17011405 | Msa0877540:intron | 40.0% |
| TCAAATAGCTTCGCTTATCG+TGG | + | chr6_1:17011600-17011619 | None:intergenic | 40.0% | |
| AATGGTGCTTGGATGTAGAA+GGG | - | chr6_1:17011778-17011797 | Msa0877540:intron | 40.0% | |
| CCCTAGAAACTCAGATTCCA+TGG | - | chr6_1:17007433-17007452 | Msa0877540:three_prime_UTR | 45.0% | |
| ! | CTTGGTGTATTCAGCTTCAG+CGG | + | chr6_1:17007513-17007532 | None:intergenic | 45.0% |
| CAGAATTTGACAAGATGGGG+TGG | - | chr6_1:17008689-17008708 | Msa0877540:intron | 45.0% | |
| AGGGTCATCTTCTTTGACTC+GGG | + | chr6_1:17008749-17008768 | None:intergenic | 45.0% | |
| GAGTCAAAGAAGATGACCCT+TGG | - | chr6_1:17008749-17008768 | Msa0877540:intron | 45.0% | |
| GAAGCGTGAAGAATGCTTAG+GGG | - | chr6_1:17009004-17009023 | Msa0877540:intron | 45.0% | |
| AGGGGCCATATAATGATACG+GGG | - | chr6_1:17009022-17009041 | Msa0877540:intron | 45.0% | |
| ATTCTGACTGCAGCAAATCG+GGG | - | chr6_1:17009267-17009286 | Msa0877540:intron | 45.0% | |
| !! | TGCTATTTCAAAGCTGGAGG+AGG | - | chr6_1:17009365-17009384 | Msa0877540:intron | 45.0% |
| !! | CAAAGAGCGTCATGCTTGTT+GGG | + | chr6_1:17009405-17009424 | None:intergenic | 45.0% |
| TTTAAACCCAGATGTGGACG+AGG | - | chr6_1:17009458-17009477 | Msa0877540:intron | 45.0% | |
| TTGCGGTAGAGTTCGTTTGA+AGG | + | chr6_1:17009635-17009654 | None:intergenic | 45.0% | |
| CGAACTCTACCGCAAATCAT+TGG | - | chr6_1:17009640-17009659 | Msa0877540:intron | 45.0% | |
| CTACCGCAAATCATTGGAAG+TGG | - | chr6_1:17009646-17009665 | Msa0877540:intron | 45.0% | |
| CAGCCACTTCCAATGATTTG+CGG | + | chr6_1:17009652-17009671 | None:intergenic | 45.0% | |
| ATCATTGGAAGTGGCTGCTA+AGG | - | chr6_1:17009655-17009674 | Msa0877540:intron | 45.0% | |
| CCCTTATTGAAGGAGTTCAC+TGG | - | chr6_1:17009854-17009873 | Msa0877540:CDS | 45.0% | |
| ! | CTGGTGTTTCCTTTTCAACG+AGG | - | chr6_1:17009993-17010012 | Msa0877540:CDS | 45.0% |
| GGTACATGTTCGATTAGACC+GGG | - | chr6_1:17010014-17010033 | Msa0877540:intron | 45.0% | |
| ATATGTCACCCATTGTGCTG+TGG | - | chr6_1:17010072-17010091 | Msa0877540:intron | 45.0% | |
| CTTTGCAAACCACAGCACAA+TGG | + | chr6_1:17010084-17010103 | None:intergenic | 45.0% | |
| TTGCACAGTTCTTGTGCAAC+AGG | - | chr6_1:17010242-17010261 | Msa0877540:intron | 45.0% | |
| TGCACAGTTCTTGTGCAACA+GGG | - | chr6_1:17010243-17010262 | Msa0877540:intron | 45.0% | |
| TTGTAGTTTGGTCTCTTGGG+AGG | - | chr6_1:17010605-17010624 | Msa0877540:intron | 45.0% | |
| TGTAGTTTGGTCTCTTGGGA+GGG | - | chr6_1:17010606-17010625 | Msa0877540:intron | 45.0% | |
| ATTAGGTCAGCAAGCAGTAG+AGG | - | chr6_1:17010786-17010805 | Msa0877540:intron | 45.0% | |
| ! | GGTTCTGTCTGGTTTCTTGT+TGG | - | chr6_1:17011379-17011398 | Msa0877540:intron | 45.0% |
| CATACTTGGATGGGTAATCC+TGG | - | chr6_1:17011509-17011528 | Msa0877540:intron | 45.0% | |
| ATGTAACAATGCCAACAGCC+AGG | + | chr6_1:17011530-17011549 | None:intergenic | 45.0% | |
| TGGCTGTTGGCATTGTTACA+TGG | - | chr6_1:17011529-17011548 | Msa0877540:intron | 45.0% | |
| GGCTGTTGGCATTGTTACAT+GGG | - | chr6_1:17011530-17011549 | Msa0877540:intron | 45.0% | |
| TGTTGGCATTGTTACATGGG+TGG | - | chr6_1:17011533-17011552 | Msa0877540:intron | 45.0% | |
| GTTGGCATTGTTACATGGGT+GGG | - | chr6_1:17011534-17011553 | Msa0877540:intron | 45.0% | |
| GAGTAGCTATGAATGGTGCT+TGG | - | chr6_1:17011767-17011786 | Msa0877540:intron | 45.0% | |
| GAATGGTGCTTGGATGTAGA+AGG | - | chr6_1:17011777-17011796 | Msa0877540:intron | 45.0% | |
| ATGGTGCTTGGATGTAGAAG+GGG | - | chr6_1:17011779-17011798 | Msa0877540:intron | 45.0% | |
| !! | AAGAAAAATAAAAAAAAATA+GGG | + | chr6_1:17007571-17007590 | None:intergenic | 5.0% |
| !! | AAAGAAAAATAAAAAAAAAT+AGG | + | chr6_1:17007572-17007591 | None:intergenic | 5.0% |
| ! | ATCAGCATCGAGAGGGTTCT+TGG | + | chr6_1:17007531-17007550 | None:intergenic | 50.0% |
| ! | GACTGACATCAGCATCGAGA+GGG | + | chr6_1:17007538-17007557 | None:intergenic | 50.0% |
| ! | AGACTGACATCAGCATCGAG+AGG | + | chr6_1:17007539-17007558 | None:intergenic | 50.0% |
| GTACAGAGGAGTTGTTGTGC+TGG | - | chr6_1:17008507-17008526 | Msa0877540:intron | 50.0% | |
| TTCTGACTGCAGCAAATCGG+GGG | - | chr6_1:17009268-17009287 | Msa0877540:intron | 50.0% | |
| !! | CCAAAGAGCGTCATGCTTGT+TGG | + | chr6_1:17009406-17009425 | None:intergenic | 50.0% |
| CCAACAAGCATGACGCTCTT+TGG | - | chr6_1:17009403-17009422 | Msa0877540:intron | 50.0% | |
| !! | GTGAAGTGAGAGCATTTCCC+AGG | + | chr6_1:17009431-17009450 | None:intergenic | 50.0% |
| GGGAAATGCTCTCACTTCAC+AGG | - | chr6_1:17009431-17009450 | Msa0877540:intron | 50.0% | |
| CTTTAGCCTCGTCCACATCT+GGG | + | chr6_1:17009467-17009486 | None:intergenic | 50.0% | |
| ACTTTAGCCTCGTCCACATC+TGG | + | chr6_1:17009468-17009487 | None:intergenic | 50.0% | |
| ! | GCAACAGGGTTTTGCTTCCT+AGG | - | chr6_1:17010257-17010276 | Msa0877540:intron | 50.0% |
| CAGGAAGGCAGATCAAAAGG+TGG | + | chr6_1:17010438-17010457 | None:intergenic | 50.0% | |
| CAGAGGAGTTGTTGTGCTGG+AGG | - | chr6_1:17008510-17008529 | Msa0877540:intron | 55.0% | |
| TCTGACTGCAGCAAATCGGG+GGG | - | chr6_1:17009269-17009288 | Msa0877540:intron | 55.0% | |
| !! | CATGACGCTCTTTGGTGCCT+GGG | - | chr6_1:17009411-17009430 | Msa0877540:intron | 55.0% |
| GCTGGTCCATCTTCTTCTGC+TGG | - | chr6_1:17010811-17010830 | Msa0877540:intron | 55.0% | |
| GGATGGGTAATCCTGGCTGT+TGG | - | chr6_1:17011516-17011535 | Msa0877540:intron | 55.0% | |
| TTCGCTTATCGTGGAGCTGG+AGG | + | chr6_1:17011591-17011610 | None:intergenic | 55.0% | |
| AGCTTCGCTTATCGTGGAGC+TGG | + | chr6_1:17011594-17011613 | None:intergenic | 55.0% | |
| !! | GCATGACGCTCTTTGGTGCC+TGG | - | chr6_1:17009410-17009429 | Msa0877540:intron | 60.0% |
| CAGCAAGCAGTAGAGGCAGC+TGG | - | chr6_1:17010793-17010812 | Msa0877540:intron | 60.0% | |
| TATCGTGGAGCTGGAGGAGG+TGG | + | chr6_1:17011585-17011604 | None:intergenic | 60.0% | |
| GCTTATCGTGGAGCTGGAGG+AGG | + | chr6_1:17011588-17011607 | None:intergenic | 60.0% | |
| !! | CTGGAGGAGGTGGTGGTGGT+AGG | + | chr6_1:17011575-17011594 | None:intergenic | 65.0% |
| ! | GGAGCTGGAGGAGGTGGTGG+TGG | + | chr6_1:17011579-17011598 | None:intergenic | 70.0% |
| CGTGGAGCTGGAGGAGGTGG+TGG | + | chr6_1:17011582-17011601 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 17007387 | 17011993 | 17007387 | ID=Msa0877540;Name=Msa0877540 |
| chr6_1 | mRNA | 17007387 | 17011993 | 17007387 | ID=Msa0877540-mRNA-1;Parent=Msa0877540;Name=Msa0877540-mRNA-1;_AED=0.05;_eAED=0.05;_QI=65|1|1|1|1|1|6|388|206 |
| chr6_1 | exon | 17007387 | 17007909 | 17007387 | ID=Msa0877540-mRNA-1:exon:4762;Parent=Msa0877540-mRNA-1 |
| chr6_1 | exon | 17008540 | 17008629 | 17008540 | ID=Msa0877540-mRNA-1:exon:4761;Parent=Msa0877540-mRNA-1 |
| chr6_1 | exon | 17009704 | 17009751 | 17009704 | ID=Msa0877540-mRNA-1:exon:4760;Parent=Msa0877540-mRNA-1 |
| chr6_1 | exon | 17009847 | 17010016 | 17009847 | ID=Msa0877540-mRNA-1:exon:4759;Parent=Msa0877540-mRNA-1 |
| chr6_1 | exon | 17010610 | 17010688 | 17010610 | ID=Msa0877540-mRNA-1:exon:4758;Parent=Msa0877540-mRNA-1 |
| chr6_1 | exon | 17011830 | 17011993 | 17011830 | ID=Msa0877540-mRNA-1:exon:4757;Parent=Msa0877540-mRNA-1 |
| chr6_1 | five_prime_UTR | 17011929 | 17011993 | 17011929 | ID=Msa0877540-mRNA-1:five_prime_utr;Parent=Msa0877540-mRNA-1 |
| chr6_1 | CDS | 17011830 | 17011928 | 17011830 | ID=Msa0877540-mRNA-1:cds;Parent=Msa0877540-mRNA-1 |
| chr6_1 | CDS | 17010610 | 17010688 | 17010610 | ID=Msa0877540-mRNA-1:cds;Parent=Msa0877540-mRNA-1 |
| chr6_1 | CDS | 17009847 | 17010016 | 17009847 | ID=Msa0877540-mRNA-1:cds;Parent=Msa0877540-mRNA-1 |
| chr6_1 | CDS | 17009704 | 17009751 | 17009704 | ID=Msa0877540-mRNA-1:cds;Parent=Msa0877540-mRNA-1 |
| chr6_1 | CDS | 17008540 | 17008629 | 17008540 | ID=Msa0877540-mRNA-1:cds;Parent=Msa0877540-mRNA-1 |
| chr6_1 | CDS | 17007775 | 17007909 | 17007775 | ID=Msa0877540-mRNA-1:cds;Parent=Msa0877540-mRNA-1 |
| chr6_1 | three_prime_UTR | 17007387 | 17007774 | 17007387 | ID=Msa0877540-mRNA-1:three_prime_utr;Parent=Msa0877540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
