AlfalfaGEDB | Msa0877540

M. sativa cultivar zhongmu-4 / Msa0877540

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680
PFAM: PF06552.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0877540	XP_013451444.1	97.573	206	5	0	1	206	1	206	1.54e-146	416

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0877540	sp\|P92792\|TOM20_SOLTU	74.611	193	48	1	5	197	4	195	1.30e-96	282

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0877540	A0A072U6U8	97.573	206	5	0	1	206	1	206	7.33e-147	416

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044890	Msa0877540	0.802226	6.203448e-49	-8.615850e-47
Msa0068970	Msa0877540	0.813871	2.055340e-51	-8.615850e-47
Msa0136400	Msa0877540	0.816065	6.700290e-52	-8.615850e-47
Msa0486070	Msa0877540	0.801006	1.103881e-48	-8.615850e-47
Msa0877540	Msa0943180	0.901153	3.573527e-78	-8.615850e-47
Msa0877540	Msa0979820	0.822625	2.143600e-53	-8.615850e-47
Msa0877540	Msa1332230	0.812568	3.971775e-51	-8.615850e-47
Msa0877540	Msa1344160	0.821304	4.334428e-53	-8.615850e-47
Msa0877540	Msa1344190	0.828598	8.224813e-55	-8.615850e-47
Msa0877540	Msa1433910	0.810712	1.005539e-50	-8.615850e-47

Showing 1 to 10 of 10 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0877540	MtrunA17_Chr6g0459751	97.573	206	5	0	1	206	1	206	1.41e-150	416
Msa0877540	MtrunA17_Chr3g0122551	58.416	202	84	0	1	202	1	202	6.27e-80	237
Msa0877540	MtrunA17_Chr6g0467501	40.000	200	81	2	1	166	1	195	8.10e-33	124
Msa0877540	MtrunA17_Chr6g0455921	42.767	159	67	3	21	163	8	158	3.59e-27	101
Msa0877540	MtrunA17_Chr6g0453351	36.628	172	94	4	7	167	6	173	2.05e-25	99.0
Msa0877540	MtrunA17_Chr7g0262471	36.364	176	97	3	1	162	1	175	1.26e-20	89.0

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0877540	AT3G27080.1	59.701	201	75	2	5	202	4	201	2.79e-81	241
Msa0877540	AT1G27390.1	54.327	208	88	1	1	201	1	208	6.36e-81	240
Msa0877540	AT5G40930.1	57.071	198	70	4	1	198	1	183	5.95e-71	214
Msa0877540	AT3G27070.1	51.042	192	83	2	8	194	1	186	3.25e-60	187
Msa0877540	AT5G40930.2	63.768	138	47	2	1	138	1	135	9.17e-55	172
Msa0877540	AT1G27390.2	53.289	152	64	1	57	201	1	152	5.86e-53	167
Msa0877540	AT3G27070.2	47.482	139	62	2	61	194	114	246	4.10e-36	127

Showing 1 to 7 of 7 entries

Previous1Next

Find 81 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGGAATAATTTGTTGCCA+AGG	0.489129	6_1:-17007421	Msa0877540:three_prime_UTR
AAGGGTCATCTTCTTTGACT+CGG	0.533813	6_1:+17010611	None:intergenic
AATCTGAGTTTCTAGGGTTT+TGG	0.198070	6_1:+17011931	None:intergenic
AATGGTGCTTGGATGTAGAA+GGG	0.633906	6_1:-17007580	Msa0877540:three_prime_UTR
ACTTTAGCCTCGTCCACATC+TGG	0.325905	6_1:+17009893	None:intergenic
AGACTGACATCAGCATCGAG+AGG	0.704805	6_1:+17011822	None:intergenic
AGATGCTATTTCAAAGCTGG+AGG	0.576638	6_1:-17009996	Msa0877540:CDS
AGCTTCGCTTATCGTGGAGC+TGG	0.491164	6_1:+17007767	None:intergenic
AGGGTCATCTTCTTTGACTC+GGG	0.469648	6_1:+17010612	None:intergenic
AGTGAATCAGAAATTTCATT+TGG	0.336445	6_1:+17007548	None:intergenic

Showing 1 to 10 of 81 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTGATTGATGTTGTGTCTA+TGG	-	chr6_1:17007665-17007684	Msa0877540:three_prime_UTR	30.0%
TTGATTGATGTTGTGTCTAT+GGG	-	chr6_1:17007666-17007685	Msa0877540:three_prime_UTR	30.0%
TACACAATATCTACACAACT+AGG	+	chr6_1:17008057-17008076	None:intergenic	30.0%
GCAAATCTGTGTATAATTCT+TGG	-	chr6_1:17008159-17008178	Msa0877540:intron	30.0%
ATAATTCTTGGAACATATGG+AGG	-	chr6_1:17008171-17008190	Msa0877540:intron	30.0%
ATATGAATGAGTTGTTGTGT+TGG	-	chr6_1:17008346-17008365	Msa0877540:intron	30.0%
ATATAGAGAATAAGCACCAA+GGG	+	chr6_1:17008768-17008787	None:intergenic	30.0%
AATGGTTCTTGTGTTATGTT+TGG	-	chr6_1:17008845-17008864	Msa0877540:intron	30.0%
TATTTCCCCGTATCATTATA+TGG	+	chr6_1:17009030-17009049	None:intergenic	30.0%
AGTCGTTTGATTGTATCTAA+TGG	-	chr6_1:17009213-17009232	Msa0877540:intron	30.0%

Showing 1 to 10 of 274 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	17007387	17011993	17007387	ID=Msa0877540;Name=Msa0877540
chr6_1	mRNA	17007387	17011993	17007387	ID=Msa0877540-mRNA-1;Parent=Msa0877540;Name=Msa0877540-mRNA-1;_AED=0.05;_eAED=0.05;_QI=65\|1\|1\|1\|1\|1\|6\|388\|206
chr6_1	exon	17007387	17007909	17007387	ID=Msa0877540-mRNA-1:exon:4762;Parent=Msa0877540-mRNA-1
chr6_1	exon	17008540	17008629	17008540	ID=Msa0877540-mRNA-1:exon:4761;Parent=Msa0877540-mRNA-1
chr6_1	exon	17009704	17009751	17009704	ID=Msa0877540-mRNA-1:exon:4760;Parent=Msa0877540-mRNA-1
chr6_1	exon	17009847	17010016	17009847	ID=Msa0877540-mRNA-1:exon:4759;Parent=Msa0877540-mRNA-1
chr6_1	exon	17010610	17010688	17010610	ID=Msa0877540-mRNA-1:exon:4758;Parent=Msa0877540-mRNA-1
chr6_1	exon	17011830	17011993	17011830	ID=Msa0877540-mRNA-1:exon:4757;Parent=Msa0877540-mRNA-1
chr6_1	five_prime_UTR	17011929	17011993	17011929	ID=Msa0877540-mRNA-1:five_prime_utr;Parent=Msa0877540-mRNA-1
chr6_1	CDS	17011830	17011928	17011830	ID=Msa0877540-mRNA-1:cds;Parent=Msa0877540-mRNA-1
chr6_1	CDS	17010610	17010688	17010610	ID=Msa0877540-mRNA-1:cds;Parent=Msa0877540-mRNA-1
chr6_1	CDS	17009847	17010016	17009847	ID=Msa0877540-mRNA-1:cds;Parent=Msa0877540-mRNA-1
chr6_1	CDS	17009704	17009751	17009704	ID=Msa0877540-mRNA-1:cds;Parent=Msa0877540-mRNA-1
chr6_1	CDS	17008540	17008629	17008540	ID=Msa0877540-mRNA-1:cds;Parent=Msa0877540-mRNA-1
chr6_1	CDS	17007775	17007909	17007775	ID=Msa0877540-mRNA-1:cds;Parent=Msa0877540-mRNA-1
chr6_1	three_prime_UTR	17007387	17007774	17007387	ID=Msa0877540-mRNA-1:three_prime_utr;Parent=Msa0877540-mRNA-1

Gene Sequence

>Msa0877540

ATGGATTTGCAACAGAACGAATTCGATCGTATCTTGTTCTTCGAGCACGCACGCAAAACCGCTGAAGCTGAATACACCAAGAACCCTCTCGATGCTGATAATTTGACAAGATGGGGTGGAGCTCTGTTAGAGTTGTCTCAGTTTCAGACTTTGCCCGAGTCAAAGAAGATGACCCTTGATGCTATTTCAAAGCTGGAGGAGGCTCTTTCTGTGAATCCCAACAAGCATGACGCTCTTTGGTGCCTGGGAAATGCTCTCACTTCACAGGCATTTTTAAACCCAGATGTGGACGAGGCTAAAGTTTACTTTGACAAGGCAGCTGTGTACTTTCAACAAGCTGTTGATGAGGATCCTTCAAACGAACTCTACCGCAAATCATTGGAAGTGGCTGCTAAGGCTCCTGAGTTACATGTAGAAATACATAAGCATGGATTAGGTCAGCAAGCAGTAGAGGCAGCTGGTCCATCTTCTTCTGCTGGTACAAAGACTCAAAAGAAAAAGAAAAACAGTGATATGAAGTATGACATACTTGGATGGGTAATCCTGGCTGTTGGCATTGTTACATGGGTGGGATTTGCAAAAGCGAACCTACCACCACCACCTCCTCCAGCTCCACGATAA

Protein sequence

>Msa0877540

MDLQQNEFDRILFFEHARKTAEAEYTKNPLDADNLTRWGGALLELSQFQTLPESKKMTLDAISKLEEALSVNPNKHDALWCLGNALTSQAFLNPDVDEAKVYFDKAAVYFQQAVDEDPSNELYRKSLEVAAKAPELHVEIHKHGLGQQAVEAAGPSSSAGTKTQKKKKNSDMKYDILGWVILAVGIVTWVGFAKANLPPPPPPAPR*