AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0136400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136400 MtrunA17_Chr1g0207701 92.784 97 7 0 1 97 1 97 8.07e-48 147
Msa0136400 MtrunA17_Chr5g0401651 49.495 99 37 4 1 95 1 90 4.80e-14 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136400 AT2G15000.5 55.238 105 41 4 1 103 1 101 3.58e-24 88.6
Msa0136400 AT2G15000.7 55.238 105 41 4 1 103 1 101 3.58e-24 88.6
Msa0136400 AT2G15000.4 55.238 105 41 4 1 103 1 101 3.58e-24 88.6
Msa0136400 AT2G15000.6 55.238 105 41 4 1 103 1 101 3.58e-24 88.6
Msa0136400 AT2G15000.1 53.608 97 39 4 1 95 1 93 3.93e-18 72.8
Msa0136400 AT4G34265.5 46.491 114 34 5 1 103 1 98 1.07e-17 72.0
Msa0136400 AT4G34265.4 46.491 114 34 5 1 103 1 98 1.07e-17 72.0
Msa0136400 AT4G34265.3 46.491 114 34 5 1 103 1 98 1.07e-17 72.0
Msa0136400 AT2G15000.3 53.125 96 39 4 1 94 1 92 1.82e-17 71.2
Msa0136400 AT2G15000.2 53.125 96 39 4 1 94 1 92 1.82e-17 71.2
Msa0136400 AT4G34265.2 44.340 106 32 5 1 95 1 90 9.76e-13 59.3
Msa0136400 AT4G34265.1 43.396 106 33 5 1 95 1 90 4.07e-12 57.8
Msa0136400 AT4G34265.6 43.396 106 33 5 1 95 1 90 4.07e-12 57.8

Find 75 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGTGTTTCTTTCAGTATC+TGG 0.204771 1_3:-68236154 Msa0136400:three_prime_UTR
CCATGCCTGCTACCTCTTCC+AGG 0.234541 1_3:-68238532 Msa0136400:intron
GTGCAGGAATTTGGGGCAAT+TGG 0.247985 1_3:-68238416 Msa0136400:intron
TTATTAATTCTTATTGTATC+TGG 0.252121 1_3:-68236201 Msa0136400:three_prime_UTR
ATAATACTCCCCGTAATTAT+TGG 0.253421 1_3:+68236338 None:intergenic
TAATTACGGGGAGTATTATC+TGG 0.297004 1_3:-68236334 Msa0136400:three_prime_UTR
AAGTAAGGGATGCATGTTAC+AGG 0.318032 1_3:-68236028 Msa0136400:three_prime_UTR
TCGTGTTTCTTTCAGTATCT+GGG 0.377668 1_3:-68236153 Msa0136400:three_prime_UTR
TGCAGGAATTTGGGGCAATT+GGG 0.381549 1_3:-68238415 Msa0136400:intron
ATATAGAGTGCCAATAATTA+CGG 0.385464 1_3:-68236348 Msa0136400:three_prime_UTR
CGGAGGCGAGGAAGGGAAGA+AGG 0.397485 1_3:+68238599 None:intergenic
ATAACAATGGCGTTGCGATC+TGG 0.400559 1_3:-68238677 Msa0136400:exon
TGGCGAGTGGCGGAGGACGG+AGG 0.410736 1_3:+68238582 None:intergenic
ATCGAGAGTGGAAACTAGAT+TGG 0.413608 1_3:+68238765 None:intergenic
GAGAAATGGAGGGTACCATT+TGG 0.417341 1_3:+68236094 None:intergenic
CGAGGGGTGGCGAGTGGCGG+AGG 0.419804 1_3:+68238575 None:intergenic
TTTATAGGGAATGGAAAAGA+TGG 0.419851 1_3:-68237967 Msa0136400:intron
ATGGAATAGGCTTTGAGAAA+TGG 0.436563 1_3:+68236080 None:intergenic
GCGGAGGACGGAGGCGAGGA+AGG 0.437115 1_3:+68238591 None:intergenic
TATAGAGTGCCAATAATTAC+GGG 0.445156 1_3:-68236347 Msa0136400:three_prime_UTR
AGAAGGAGCCGCCGGACGAA+GGG 0.456281 1_3:+68238616 None:intergenic
TATTGTTGTTAGTCATGAGT+TGG 0.469273 1_3:-68236120 Msa0136400:three_prime_UTR
ATTGTTGTTAGTCATGAGTT+GGG 0.471035 1_3:-68236119 Msa0136400:three_prime_UTR
AAGAGGCGGGGCTGAGTGCG+AGG 0.481512 1_3:+68238557 None:intergenic
GGCCAGGTCTTCCCTTCGTC+CGG 0.483656 1_3:-68238627 Msa0136400:CDS
AGCAGGCATGGAAAAGAGGC+GGG 0.485396 1_3:+68238544 None:intergenic
AAGGACATCGATCATCCAAT+GGG 0.489534 1_3:-68237935 Msa0136400:three_prime_UTR
AGACCTGGCCGTGGAGATGA+AGG 0.492112 1_3:+68238640 None:intergenic
AACGCCATTGTTATGTGTAT+AGG 0.495844 1_3:+68238686 None:intergenic
GAATAGGCTTTGAGAAATGG+AGG 0.497614 1_3:+68236083 None:intergenic
GCTCCTTCATCTCCACGGCC+AGG 0.498839 1_3:-68238643 Msa0136400:CDS
CGGAGGACGGAGGCGAGGAA+GGG 0.500771 1_3:+68238592 None:intergenic
GTGCGAGGGGTGGCGAGTGG+CGG 0.502077 1_3:+68238572 None:intergenic
CAGTTACTTGAGCAAGCTGT+TGG 0.507883 1_3:-68236393 Msa0136400:three_prime_UTR
CAGCATTCGTCTCTCCCCAT+TGG 0.512363 1_3:+68237920 None:intergenic
CCTGGAAGAGGTAGCAGGCA+TGG 0.513058 1_3:+68238532 None:intergenic
CGCCGGACGAAGGGAAGACC+TGG 0.513153 1_3:+68238625 None:intergenic
GGGTGGCGAGTGGCGGAGGA+CGG 0.517554 1_3:+68238579 None:intergenic
TTAGGGTTTGGACCTGGAAG+AGG 0.524458 1_3:+68238520 None:intergenic
TTGGACCTGGAAGAGGTAGC+AGG 0.529380 1_3:+68238527 None:intergenic
AGGTAGCAGGCATGGAAAAG+AGG 0.531493 1_3:+68238540 None:intergenic
AGTGGCGGAGGACGGAGGCG+AGG 0.533816 1_3:+68238587 None:intergenic
ACGAAGGGAAGACCTGGCCG+TGG 0.538799 1_3:+68238631 None:intergenic
AGAGGCGGGGCTGAGTGCGA+GGG 0.539518 1_3:+68238558 None:intergenic
AAGAAGGAGCCGCCGGACGA+AGG 0.539975 1_3:+68238615 None:intergenic
ATCTCGCTCCTTCATCTCCA+CGG 0.540316 1_3:-68238648 Msa0136400:CDS
GAGTATTATCTGGGAAGTAA+TGG 0.542717 1_3:-68236324 Msa0136400:three_prime_UTR
AAGCTCGTGCGCTGACGGCA+AGG 0.543327 1_3:+68238332 None:intergenic
CGTCGTTCGATGAGAATTCG+AGG 0.543913 1_3:-68238793 Msa0136400:five_prime_UTR
GAGGCGGGGCTGAGTGCGAG+GGG 0.547076 1_3:+68238559 None:intergenic
GGAAGGGAAGAAGGAGCCGC+CGG 0.548993 1_3:+68238608 None:intergenic
GCGGGGCTGAGTGCGAGGGG+TGG 0.550387 1_3:+68238562 None:intergenic
TGAGTGCGAGGGGTGGCGAG+TGG 0.550653 1_3:+68238569 None:intergenic
TTATAGGGAATGGAAAAGAT+GGG 0.555551 1_3:-68237966 Msa0136400:intron
CAAGGACATCGATCATCCAA+TGG 0.558518 1_3:-68237936 Msa0136400:three_prime_UTR
GCTACAAGCTCGTGCGCTGA+CGG 0.567501 1_3:+68238327 None:intergenic
CGTGTTTCTTTCAGTATCTG+GGG 0.571412 1_3:-68236152 Msa0136400:three_prime_UTR
AGAACGACGGAAGGTACCAT+TGG 0.577356 1_3:+68238297 None:intergenic
TAGCAGGCATGGAAAAGAGG+CGG 0.583179 1_3:+68238543 None:intergenic
AATTACGGGGAGTATTATCT+GGG 0.583825 1_3:-68236333 Msa0136400:three_prime_UTR
TTTGTTGGTGCAGGAATTTG+GGG 0.587970 1_3:-68238423 Msa0136400:intron
GCTTGTAGCGAGCTGTCCAA+TGG 0.595505 1_3:-68238313 Msa0136400:CDS
GAAAAGATGGGTGATGCGCA+AGG 0.615793 1_3:-68237954 Msa0136400:three_prime_UTR
ACAGCCATCGTGCTATGCAG+TGG 0.621490 1_3:+68238373 None:intergenic
ATCTTGACAAGAACGACGGA+AGG 0.626544 1_3:+68238288 None:intergenic
CAGGTCTTCCCTTCGTCCGG+CGG 0.627826 1_3:-68238624 Msa0136400:CDS
GTCATGAGTTGGGATCCAAA+TGG 0.640332 1_3:-68236109 Msa0136400:three_prime_UTR
GCAGGCATGGAAAAGAGGCG+GGG 0.645770 1_3:+68238545 None:intergenic
TTTGCCACTGCATAGCACGA+TGG 0.666045 1_3:-68238377 Msa0136400:CDS
TTCTCCTATACACATAACAA+TGG 0.666341 1_3:-68238690 Msa0136400:exon
AATAGGCTTTGAGAAATGGA+GGG 0.681330 1_3:+68236084 None:intergenic
TAAGGGATGCATGTTACAGG+CGG 0.682564 1_3:-68236025 Msa0136400:three_prime_UTR
AGCGATCTTGACAAGAACGA+CGG 0.707528 1_3:+68238284 None:intergenic
ATAGAGTGCCAATAATTACG+GGG 0.755091 1_3:-68236346 Msa0136400:three_prime_UTR
AGGACATCGATCATCCAATG+GGG 0.763566 1_3:-68237934 Msa0136400:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTAAGATTTTAATTTAT+AGG - chr1_3:68236832-68236851 Msa0136400:intron 10.0%
!!! TTTAAATTTTCATAATCTCA+AGG + chr1_3:68237099-68237118 None:intergenic 15.0%
!! TAGTAAGTTGTTAAAATATA+TGG - chr1_3:68237190-68237209 Msa0136400:intron 15.0%
!! AAAATAAAGAATTTGTAGTT+GGG + chr1_3:68237942-68237961 None:intergenic 15.0%
!! TAAAAATACTTAGTATTACA+CGG + chr1_3:68238383-68238402 None:intergenic 15.0%
!! TTATTAATTCTTATTGTATC+TGG - chr1_3:68238613-68238632 Msa0136400:CDS 15.0%
!!! AAGAGTTTTTTTTTTTTGTA+TGG + chr1_3:68238760-68238779 None:intergenic 15.0%
!!! AAAACTCTTTATTTTAAGTA+AGG - chr1_3:68238771-68238790 Msa0136400:five_prime_UTR 15.0%
!!! AAACTCTTTATTTTAAGTAA+GGG - chr1_3:68238772-68238791 Msa0136400:five_prime_UTR 15.0%
!!! CAACATGATTAAAACATTTT+CGG + chr1_3:68236594-68236613 None:intergenic 20.0%
!!! AAAAAACACATTTTTGTGAA+GGG + chr1_3:68236640-68236659 None:intergenic 20.0%
!!! AAAAAAACACATTTTTGTGA+AGG + chr1_3:68236641-68236660 None:intergenic 20.0%
!!! AGATTTTAATTTATAGGGAA+TGG - chr1_3:68236838-68236857 Msa0136400:intron 20.0%
!!! ATTTTGACAAAGGAATAAAA+GGG + chr1_3:68236937-68236956 None:intergenic 20.0%
!!! AATTTTGACAAAGGAATAAA+AGG + chr1_3:68236938-68236957 None:intergenic 20.0%
!!! TGAATTCATAATTTTGACAA+AGG + chr1_3:68236947-68236966 None:intergenic 20.0%
!! AACAGTAAGTGTTTAAATAT+CGG - chr1_3:68237221-68237240 Msa0136400:intron 20.0%
!! AAGAATGAAAAATGAACATT+CGG + chr1_3:68237364-68237383 None:intergenic 20.0%
!! TATTAGAATAACTGATGAAA+GGG + chr1_3:68237804-68237823 None:intergenic 20.0%
!! TGTTTAACCATAATAACAAT+GGG + chr1_3:68237892-68237911 None:intergenic 20.0%
!! ATGTTTAACCATAATAACAA+TGG + chr1_3:68237893-68237912 None:intergenic 20.0%
!! CAAAATAAAGAATTTGTAGT+TGG + chr1_3:68237943-68237962 None:intergenic 20.0%
!!! TTTGAAAAATGAGATTTTTG+TGG - chr1_3:68237959-68237978 Msa0136400:three_prime_UTR 20.0%
!! AAAAACAGAAATTTCCAAAA+AGG + chr1_3:68238230-68238249 None:intergenic 20.0%
!! AATATAAAAAACAGGTTCTT+TGG + chr1_3:68238567-68238586 None:intergenic 20.0%
!! ACAGTTTGAATATAAAAAAC+AGG + chr1_3:68238575-68238594 None:intergenic 20.0%
!!! GTTTTTTTTTTTTGTATGGA+TGG + chr1_3:68238756-68238775 None:intergenic 20.0%
!! TCACAAAGAAAGAGTTTTTA+GGG + chr1_3:68236104-68236123 None:intergenic 25.0%
!! ATCACAAAGAAAGAGTTTTT+AGG + chr1_3:68236105-68236124 None:intergenic 25.0%
!!! TCTGAATGTGTTTTTTTTGT+TGG - chr1_3:68236376-68236395 Msa0136400:three_prime_UTR 25.0%
!! AAAAACACATTTTTGTGAAG+GGG + chr1_3:68236639-68236658 None:intergenic 25.0%
!! TTTCTAAGGAAAAATCTAAC+TGG + chr1_3:68237040-68237059 None:intergenic 25.0%
! ACAGTAAGTGTTTAAATATC+GGG - chr1_3:68237222-68237241 Msa0136400:intron 25.0%
! CAATAAAATACCACATACAA+TGG + chr1_3:68237433-68237452 None:intergenic 25.0%
!!! TCTTAGGTTTTGATTCATTT+AGG + chr1_3:68237507-68237526 None:intergenic 25.0%
!!! TTTTTCAACTAGAAGTATAG+AGG - chr1_3:68237650-68237669 Msa0136400:intron 25.0%
! GTATTAGAATAACTGATGAA+AGG + chr1_3:68237805-68237824 None:intergenic 25.0%
!! CTAAATTCCCATTGTTATTA+TGG - chr1_3:68237882-68237901 Msa0136400:intron 25.0%
!! ATATAGAGTGCCAATAATTA+CGG - chr1_3:68238466-68238485 Msa0136400:intron 25.0%
!!! TTCTTATTGTATCTGGTTTT+TGG - chr1_3:68238620-68238639 Msa0136400:CDS 25.0%
!!! TTTTTTTGTATGGATGGAAT+AGG + chr1_3:68238750-68238769 None:intergenic 25.0%
! TTCAGATTTTTAATCGAGAG+TGG + chr1_3:68236064-68236083 None:intergenic 30.0%
TTCTCCTATACACATAACAA+TGG - chr1_3:68236124-68236143 Msa0136400:three_prime_UTR 30.0%
TCTAGAAATCCTTAGATTGT+AGG - chr1_3:68236708-68236727 Msa0136400:intron 30.0%
CTAATTGTACCTACAATCTA+AGG + chr1_3:68236720-68236739 None:intergenic 30.0%
TTTATAGGGAATGGAAAAGA+TGG - chr1_3:68236847-68236866 Msa0136400:intron 30.0%
TTATAGGGAATGGAAAAGAT+GGG - chr1_3:68236848-68236867 Msa0136400:intron 30.0%
! TCCTTCTTAAGAGTATGTTA+GGG - chr1_3:68237157-68237176 Msa0136400:intron 30.0%
CTGACAGTTTAATAGAGTAA+GGG - chr1_3:68237251-68237270 Msa0136400:intron 30.0%
TGACAGTTTAATAGAGTAAG+GGG - chr1_3:68237252-68237271 Msa0136400:intron 30.0%
!! CAATCAATTTTGTTTCCCTT+GGG - chr1_3:68237402-68237421 Msa0136400:intron 30.0%
! GAAGATATTTTCTGAGTAAG+CGG - chr1_3:68237461-68237480 Msa0136400:intron 30.0%
!! TTTTGATTCATTTAGGACTG+AGG + chr1_3:68237500-68237519 None:intergenic 30.0%
ATCATTAGGGATACAATCTT+AGG + chr1_3:68237523-68237542 None:intergenic 30.0%
! GATTGTATCCCTAATGATTT+TGG - chr1_3:68237525-68237544 Msa0136400:intron 30.0%
TAGCAATGCCAAAATCATTA+GGG + chr1_3:68237536-68237555 None:intergenic 30.0%
! GTGTAGAAACTTGATAACAT+GGG + chr1_3:68237588-68237607 None:intergenic 30.0%
TGACAATAGCATTTCAAGAA+AGG + chr1_3:68237610-68237629 None:intergenic 30.0%
AAAGTGAACGAATTTATGCA+TGG + chr1_3:68237729-68237748 None:intergenic 30.0%
CTGAAGATTTCAAATTGTCT+TGG + chr1_3:68238019-68238038 None:intergenic 30.0%
! CAAGACAATTTGAAATCTTC+AGG - chr1_3:68238017-68238036 Msa0136400:intron 30.0%
!!! AGTCTGTATTTTTAGTGTGA+AGG - chr1_3:68238067-68238086 Msa0136400:intron 30.0%
! AGGGTACTATTTATGAAAGT+GGG - chr1_3:68238313-68238332 Msa0136400:CDS 30.0%
! TATAGAGTGCCAATAATTAC+GGG - chr1_3:68238467-68238486 Msa0136400:intron 30.0%
ATAATACTCCCCGTAATTAT+TGG + chr1_3:68238479-68238498 None:intergenic 30.0%
!!! TCTGTTATGTTTTTTGACTC+CGG - chr1_3:68238540-68238559 Msa0136400:CDS 30.0%
! TATTGTTGTTAGTCATGAGT+TGG - chr1_3:68238694-68238713 Msa0136400:five_prime_UTR 30.0%
! ATTGTTGTTAGTCATGAGTT+GGG - chr1_3:68238695-68238714 Msa0136400:five_prime_UTR 30.0%
!!! GAGTTTTTAGGGTTTTGTGA+GGG + chr1_3:68236093-68236112 None:intergenic 35.0%
!!! AGAGTTTTTAGGGTTTTGTG+AGG + chr1_3:68236094-68236113 None:intergenic 35.0%
AACGCCATTGTTATGTGTAT+AGG + chr1_3:68236131-68236150 None:intergenic 35.0%
TTGAATTGGGAATTAGGGTT+TGG + chr1_3:68236309-68236328 None:intergenic 35.0%
TGAGCTTGAATTGGGAATTA+GGG + chr1_3:68236314-68236333 None:intergenic 35.0%
TTGAGCTTGAATTGGGAATT+AGG + chr1_3:68236315-68236334 None:intergenic 35.0%
ATTGTCGTTGAGCTTGAATT+GGG + chr1_3:68236322-68236341 None:intergenic 35.0%
!!! TGTGTTTTTTTTGTTGGTGC+AGG - chr1_3:68236382-68236401 Msa0136400:three_prime_UTR 35.0%
! TTTTTGTTGGTGCAGGAATT+TGG - chr1_3:68236389-68236408 Msa0136400:three_prime_UTR 35.0%
! TTTTGTTGGTGCAGGAATTT+GGG - chr1_3:68236390-68236409 Msa0136400:three_prime_UTR 35.0%
AAGGGGTCTGAAAATCATTA+TGG + chr1_3:68236622-68236641 None:intergenic 35.0%
! TTTTGCTTCATGTGAAGAGA+TGG - chr1_3:68236763-68236782 Msa0136400:intron 35.0%
! TTCATGTGAAGAGATGGATT+GGG - chr1_3:68236769-68236788 Msa0136400:intron 35.0%
!! GAATGCTGCTTTCTATTTGT+AGG - chr1_3:68236909-68236928 Msa0136400:intron 35.0%
CATCTCTAACAATCATCAAC+CGG + chr1_3:68237007-68237026 None:intergenic 35.0%
GATGATTGTTAGAGATGATC+TGG - chr1_3:68237010-68237029 Msa0136400:intron 35.0%
! GTCCTTCTTAAGAGTATGTT+AGG - chr1_3:68237156-68237175 Msa0136400:intron 35.0%
TCCCTAACATACTCTTAAGA+AGG + chr1_3:68237161-68237180 None:intergenic 35.0%
ACTCTATTAAACTGTCAGGT+TGG + chr1_3:68237249-68237268 None:intergenic 35.0%
CCTTACTCTATTAAACTGTC+AGG + chr1_3:68237253-68237272 None:intergenic 35.0%
CCTGACAGTTTAATAGAGTA+AGG - chr1_3:68237250-68237269 Msa0136400:intron 35.0%
AAATTAACCCTCGACTTTGT+AGG + chr1_3:68237320-68237339 None:intergenic 35.0%
TACAAAGTCGAGGGTTAATT+TGG - chr1_3:68237319-68237338 Msa0136400:intron 35.0%
!! GAACATTCGGTTTTGATGTT+TGG + chr1_3:68237351-68237370 None:intergenic 35.0%
!! GCAATCAATTTTGTTTCCCT+TGG - chr1_3:68237401-68237420 Msa0136400:intron 35.0%
CTAGCAATGCCAAAATCATT+AGG + chr1_3:68237537-68237556 None:intergenic 35.0%
!! CTAATGATTTTGGCATTGCT+AGG - chr1_3:68237535-68237554 Msa0136400:intron 35.0%
! GGTGTAGAAACTTGATAACA+TGG + chr1_3:68237589-68237608 None:intergenic 35.0%
! CCATCTACATGACATTTTGA+GGG + chr1_3:68237679-68237698 None:intergenic 35.0%
CCTCAAAATGTCATGTAGAT+GGG - chr1_3:68237677-68237696 Msa0136400:intron 35.0%
AATTTGTAGTTGGGTCAAAG+AGG + chr1_3:68237933-68237952 None:intergenic 35.0%
AATCTTCAGGAAGTTTGTCA+TGG - chr1_3:68238030-68238049 Msa0136400:intron 35.0%
AGGACTGCTTACTATACTTA+AGG - chr1_3:68238169-68238188 Msa0136400:intron 35.0%
! CTTAAGGTCTTTGTTTGAAG+TGG - chr1_3:68238185-68238204 Msa0136400:intron 35.0%
! GTGTTATGACAACTCCTTTT+TGG - chr1_3:68238213-68238232 Msa0136400:intron 35.0%
!! GAGGGTACTATTTATGAAAG+TGG - chr1_3:68238312-68238331 Msa0136400:CDS 35.0%
! ATAGAGTGCCAATAATTACG+GGG - chr1_3:68238468-68238487 Msa0136400:intron 35.0%
!! TAATTACGGGGAGTATTATC+TGG - chr1_3:68238480-68238499 Msa0136400:intron 35.0%
!! AATTACGGGGAGTATTATCT+GGG - chr1_3:68238481-68238500 Msa0136400:intron 35.0%
GAGTATTATCTGGGAAGTAA+TGG - chr1_3:68238490-68238509 Msa0136400:intron 35.0%
AAAAAACAGGTTCTTTGGTC+CGG + chr1_3:68238562-68238581 None:intergenic 35.0%
ATCGTGTTTCTTTCAGTATC+TGG - chr1_3:68238660-68238679 Msa0136400:CDS 35.0%
TCGTGTTTCTTTCAGTATCT+GGG - chr1_3:68238661-68238680 Msa0136400:CDS 35.0%
!! AATAGGCTTTGAGAAATGGA+GGG + chr1_3:68238733-68238752 None:intergenic 35.0%
!! ATGGAATAGGCTTTGAGAAA+TGG + chr1_3:68238737-68238756 None:intergenic 35.0%
ATCGAGAGTGGAAACTAGAT+TGG + chr1_3:68236052-68236071 None:intergenic 40.0%
CATTGTCGTTGAGCTTGAAT+TGG + chr1_3:68236323-68236342 None:intergenic 40.0%
TTTGTTGGTGCAGGAATTTG+GGG - chr1_3:68236391-68236410 Msa0136400:three_prime_UTR 40.0%
! GTGAGTCTTGTCTGTTCTAT+AGG - chr1_3:68236565-68236584 Msa0136400:intron 40.0%
CTTCATGTGAAGAGATGGAT+TGG - chr1_3:68236768-68236787 Msa0136400:intron 40.0%
! TTTGTGAGTCTGTCTAGCTT+TGG - chr1_3:68236798-68236817 Msa0136400:intron 40.0%
AAGGACATCGATCATCCAAT+GGG - chr1_3:68236879-68236898 Msa0136400:intron 40.0%
GATTGTTAGAGATGATCTGG+AGG - chr1_3:68237013-68237032 Msa0136400:intron 40.0%
CGGTCAAGGATGAATTTCTA+AGG + chr1_3:68237054-68237073 None:intergenic 40.0%
CATACAATGGAAATGCCCAA+GGG + chr1_3:68237420-68237439 None:intergenic 40.0%
ACATACAATGGAAATGCCCA+AGG + chr1_3:68237421-68237440 None:intergenic 40.0%
TTGGGCATTTCCATTGTATG+TGG - chr1_3:68237420-68237439 Msa0136400:intron 40.0%
CCCTCAAAATGTCATGTAGA+TGG - chr1_3:68237676-68237695 Msa0136400:intron 40.0%
! CCCATCTACATGACATTTTG+AGG + chr1_3:68237680-68237699 None:intergenic 40.0%
TCATGTAGATGGGAAACTCT+TGG - chr1_3:68237687-68237706 Msa0136400:intron 40.0%
CTGGAAAAACAGCCATTTCA+AGG + chr1_3:68237781-68237800 None:intergenic 40.0%
AGAATAACTGATGAAAGGGC+TGG + chr1_3:68237800-68237819 None:intergenic 40.0%
GTAAACTCCATTCCTTTCAC+AGG - chr1_3:68237834-68237853 Msa0136400:intron 40.0%
! GGAATTTAGAACATCACCTC+AGG + chr1_3:68237871-68237890 None:intergenic 40.0%
! AGCAAGCTGTTGGATTTTCA+TGG - chr1_3:68238431-68238450 Msa0136400:intron 40.0%
CGTGTTTCTTTCAGTATCTG+GGG - chr1_3:68238662-68238681 Msa0136400:CDS 40.0%
!! GAATAGGCTTTGAGAAATGG+AGG + chr1_3:68238734-68238753 None:intergenic 40.0%
AAGTAAGGGATGCATGTTAC+AGG - chr1_3:68238786-68238805 Msa0136400:five_prime_UTR 40.0%
ATAACAATGGCGTTGCGATC+TGG - chr1_3:68236137-68236156 Msa0136400:three_prime_UTR 45.0%
! TGCAGGAATTTGGGGCAATT+GGG - chr1_3:68236399-68236418 Msa0136400:intron 45.0%
ATCTTGACAAGAACGACGGA+AGG + chr1_3:68236529-68236548 None:intergenic 45.0%
AGCGATCTTGACAAGAACGA+CGG + chr1_3:68236533-68236552 None:intergenic 45.0%
CAAGGACATCGATCATCCAA+TGG - chr1_3:68236878-68236897 Msa0136400:intron 45.0%
AGGACATCGATCATCCAATG+GGG - chr1_3:68236880-68236899 Msa0136400:intron 45.0%
AAATTCATCCTTGACCGTGC+AGG - chr1_3:68237057-68237076 Msa0136400:intron 45.0%
AATTCATCCTTGACCGTGCA+GGG - chr1_3:68237058-68237077 Msa0136400:intron 45.0%
TTTCAAGGACGACACTTGCA+GGG + chr1_3:68237766-68237785 None:intergenic 45.0%
ATTTCAAGGACGACACTTGC+AGG + chr1_3:68237767-68237786 None:intergenic 45.0%
! TGCAAGTGTCGTCCTTGAAA+TGG - chr1_3:68237766-68237785 Msa0136400:intron 45.0%
AGGATCACCTGTGAAAGGAA+TGG + chr1_3:68237844-68237863 None:intergenic 45.0%
GAATCAGGATCACCTGTGAA+AGG + chr1_3:68237849-68237868 None:intergenic 45.0%
AGAACATCACCTCAGGAATC+AGG + chr1_3:68237864-68237883 None:intergenic 45.0%
! AGGTCTTTGTTTGAAGTGGC+TGG - chr1_3:68238189-68238208 Msa0136400:intron 45.0%
AAGTGGGATGATCTGATGAC+AGG - chr1_3:68238329-68238348 Msa0136400:CDS 45.0%
CAGTTACTTGAGCAAGCTGT+TGG - chr1_3:68238421-68238440 Msa0136400:intron 45.0%
! GTCATGAGTTGGGATCCAAA+TGG - chr1_3:68238705-68238724 Msa0136400:five_prime_UTR 45.0%
!! GAGAAATGGAGGGTACCATT+TGG + chr1_3:68238723-68238742 None:intergenic 45.0%
TAAGGGATGCATGTTACAGG+CGG - chr1_3:68238789-68238808 Msa0136400:five_prime_UTR 45.0%
!!! TATTAAGATTTTAATTTATA+GGG - chr1_3:68236833-68236852 Msa0136400:intron 5.0%
!! ATAAAAATAAAATTTATATC+AGG - chr1_3:68238149-68238168 Msa0136400:intron 5.0%
!!! GTTTTTTTTTTTTTTTTTTA+TGG - chr1_3:68238244-68238263 Msa0136400:intron 5.0%
CGTCGTTCGATGAGAATTCG+AGG - chr1_3:68236021-68236040 Msa0136400:three_prime_UTR 50.0%
ATCTCGCTCCTTCATCTCCA+CGG - chr1_3:68236166-68236185 Msa0136400:three_prime_UTR 50.0%
TAGCAGGCATGGAAAAGAGG+CGG + chr1_3:68236274-68236293 None:intergenic 50.0%
AGGTAGCAGGCATGGAAAAG+AGG + chr1_3:68236277-68236296 None:intergenic 50.0%
TTAGGGTTTGGACCTGGAAG+AGG + chr1_3:68236297-68236316 None:intergenic 50.0%
TGGGAATTAGGGTTTGGACC+TGG + chr1_3:68236303-68236322 None:intergenic 50.0%
! GTGCAGGAATTTGGGGCAAT+TGG - chr1_3:68236398-68236417 Msa0136400:intron 50.0%
TTTGCCACTGCATAGCACGA+TGG - chr1_3:68236437-68236456 Msa0136400:intron 50.0%
!! AGAACGACGGAAGGTACCAT+TGG + chr1_3:68236520-68236539 None:intergenic 50.0%
GAAAAGATGGGTGATGCGCA+AGG - chr1_3:68236860-68236879 Msa0136400:intron 50.0%
ACAGGTGATCCTGATTCCTG+AGG - chr1_3:68237852-68237871 Msa0136400:intron 50.0%
AGCAGGCATGGAAAAGAGGC+GGG + chr1_3:68236273-68236292 None:intergenic 55.0%
TTGGACCTGGAAGAGGTAGC+AGG + chr1_3:68236290-68236309 None:intergenic 55.0%
ACAGCCATCGTGCTATGCAG+TGG + chr1_3:68236444-68236463 None:intergenic 55.0%
GCTTGTAGCGAGCTGTCCAA+TGG - chr1_3:68236501-68236520 Msa0136400:intron 55.0%
CAGCATTCGTCTCTCCCCAT+TGG + chr1_3:68236897-68236916 None:intergenic 55.0%
TGTGCGTGTGAGTGAGTGAC+CGG - chr1_3:68236985-68237004 Msa0136400:intron 55.0%
!! CAATTTGAGAGCGCCCTGCA+CGG + chr1_3:68237074-68237093 None:intergenic 55.0%
!! TGAGAGCGCCTACAAAGTCG+AGG - chr1_3:68237309-68237328 Msa0136400:intron 55.0%
!! GAGAGCGCCTACAAAGTCGA+GGG - chr1_3:68237310-68237329 Msa0136400:intron 55.0%
ATGCATGCTCGTGAGTCGTG+AGG - chr1_3:68238293-68238312 Msa0136400:CDS 55.0%
TGCATGCTCGTGAGTCGTGA+GGG - chr1_3:68238294-68238313 Msa0136400:CDS 55.0%
AGACCTGGCCGTGGAGATGA+AGG + chr1_3:68236177-68236196 None:intergenic 60.0%
GCAGGCATGGAAAAGAGGCG+GGG + chr1_3:68236272-68236291 None:intergenic 60.0%
CCTGGAAGAGGTAGCAGGCA+TGG + chr1_3:68236285-68236304 None:intergenic 60.0%
CCATGCCTGCTACCTCTTCC+AGG - chr1_3:68236282-68236301 Msa0136400:three_prime_UTR 60.0%
GCTACAAGCTCGTGCGCTGA+CGG + chr1_3:68236490-68236509 None:intergenic 60.0%
! CGTGCAGGGCGCTCTCAAAT+TGG - chr1_3:68237072-68237091 Msa0136400:intron 60.0%
GCTCCTTCATCTCCACGGCC+AGG - chr1_3:68236171-68236190 Msa0136400:three_prime_UTR 65.0%
ACGAAGGGAAGACCTGGCCG+TGG + chr1_3:68236186-68236205 None:intergenic 65.0%
GGCCAGGTCTTCCCTTCGTC+CGG - chr1_3:68236187-68236206 Msa0136400:three_prime_UTR 65.0%
CAGGTCTTCCCTTCGTCCGG+CGG - chr1_3:68236190-68236209 Msa0136400:three_prime_UTR 65.0%
AGAAGGAGCCGCCGGACGAA+GGG + chr1_3:68236201-68236220 None:intergenic 65.0%
AAGAAGGAGCCGCCGGACGA+AGG + chr1_3:68236202-68236221 None:intergenic 65.0%
GGAAGGGAAGAAGGAGCCGC+CGG + chr1_3:68236209-68236228 None:intergenic 65.0%
CGGAGGCGAGGAAGGGAAGA+AGG + chr1_3:68236218-68236237 None:intergenic 65.0%
! AAGCTCGTGCGCTGACGGCA+AGG + chr1_3:68236485-68236504 None:intergenic 65.0%
CGCCGGACGAAGGGAAGACC+TGG + chr1_3:68236192-68236211 None:intergenic 70.0%
CGGAGGACGGAGGCGAGGAA+GGG + chr1_3:68236225-68236244 None:intergenic 70.0%
TGAGTGCGAGGGGTGGCGAG+TGG + chr1_3:68236248-68236267 None:intergenic 70.0%
AGAGGCGGGGCTGAGTGCGA+GGG + chr1_3:68236259-68236278 None:intergenic 70.0%
AAGAGGCGGGGCTGAGTGCG+AGG + chr1_3:68236260-68236279 None:intergenic 70.0%
!! GAGAGCGCCCTGCACGGTCA+AGG + chr1_3:68237068-68237087 None:intergenic 70.0%
GCGGAGGACGGAGGCGAGGA+AGG + chr1_3:68236226-68236245 None:intergenic 75.0%
! AGTGGCGGAGGACGGAGGCG+AGG + chr1_3:68236230-68236249 None:intergenic 75.0%
! TGGCGAGTGGCGGAGGACGG+AGG + chr1_3:68236235-68236254 None:intergenic 75.0%
! GGGTGGCGAGTGGCGGAGGA+CGG + chr1_3:68236238-68236257 None:intergenic 75.0%
GTGCGAGGGGTGGCGAGTGG+CGG + chr1_3:68236245-68236264 None:intergenic 75.0%
GAGGCGGGGCTGAGTGCGAG+GGG + chr1_3:68236258-68236277 None:intergenic 75.0%
! CGAGGGGTGGCGAGTGGCGG+AGG + chr1_3:68236242-68236261 None:intergenic 80.0%
! GCGGGGCTGAGTGCGAGGGG+TGG + chr1_3:68236255-68236274 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 68236003 68238833 68236003 ID=Msa0136400;Name=Msa0136400
chr1_3 mRNA 68236003 68238833 68236003 ID=Msa0136400-mRNA-1;Parent=Msa0136400;Name=Msa0136400-mRNA-1;_AED=0.16;_eAED=0.16;_QI=140|1|1|1|0.33|0.75|4|493|103
chr1_3 exon 68236003 68236412 68236003 ID=Msa0136400-mRNA-1:exon:23584;Parent=Msa0136400-mRNA-1
chr1_3 exon 68237910 68237982 68237910 ID=Msa0136400-mRNA-1:exon:23583;Parent=Msa0136400-mRNA-1
chr1_3 exon 68238272 68238432 68238272 ID=Msa0136400-mRNA-1:exon:23582;Parent=Msa0136400-mRNA-1
chr1_3 exon 68238533 68238833 68238533 ID=Msa0136400-mRNA-1:exon:23581;Parent=Msa0136400-mRNA-1
chr1_3 five_prime_UTR 68238694 68238833 68238694 ID=Msa0136400-mRNA-1:five_prime_utr;Parent=Msa0136400-mRNA-1
chr1_3 CDS 68238533 68238693 68238533 ID=Msa0136400-mRNA-1:cds;Parent=Msa0136400-mRNA-1
chr1_3 CDS 68238282 68238432 68238282 ID=Msa0136400-mRNA-1:cds;Parent=Msa0136400-mRNA-1
chr1_3 three_prime_UTR 68238272 68238281 68238272 ID=Msa0136400-mRNA-1:three_prime_utr;Parent=Msa0136400-mRNA-1
chr1_3 three_prime_UTR 68237910 68237982 68237910 ID=Msa0136400-mRNA-1:three_prime_utr;Parent=Msa0136400-mRNA-1
chr1_3 three_prime_UTR 68236003 68236412 68236003 ID=Msa0136400-mRNA-1:three_prime_utr;Parent=Msa0136400-mRNA-1
Gene Sequence

>Msa0136400

ATGGCGTTGCGATCTGGATCTCTATCTCGCTCCTTCATCTCCACGGCCAGGTCTTCCCTTCGTCCGGCGGCTCCTTCTTCCCTTCCTCGCCTCCGTCCTCCGCCACTCGCCACCCCTCGCACTCAGCCCCGCCTCTTTTCCATGCCTGCTACCTCTTCCAGGAATTTGGGGCAATTGGGTTGCGTACAATCACTTTTGCCACTGCATAGCACGATGGCTGTAGCGTGTTTCACATCTCACCTTGCCGTCAGCGCACGAGCTTGTAGCGAGCTGTCCAATGGTACCTTCCGTCGTTCTTGTCAAGATCGCTAA

Protein sequence

>Msa0136400

MALRSGSLSRSFISTARSSLRPAAPSSLPRLRPPPLATPRTQPRLFSMPATSSRNLGQLGCVQSLLPLHSTMAVACFTSHLAVSARACSELSNGTFRRSCQDR*