Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0136400 | XP_013470020.1 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 1.20e-60 | 190 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0136400 | A0A072VRJ2 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 5.74e-61 | 190 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002430 | Msa0136400 | 0.824471 | 7.929609e-54 | -8.615850e-47 |
Msa0136400 | Msa0167860 | 0.828380 | 9.284015e-55 | -8.615850e-47 |
Msa0136400 | Msa0192490 | 0.802229 | 6.195317e-49 | -8.615850e-47 |
Msa0136400 | Msa0223240 | 0.806466 | 8.116524e-50 | -8.615850e-47 |
Msa0136400 | Msa0337750 | 0.811496 | 6.801349e-51 | -8.615850e-47 |
Msa0136400 | Msa0383690 | 0.855396 | 6.487438e-62 | -8.615850e-47 |
Msa0136400 | Msa0550490 | 0.805925 | 1.054743e-49 | -8.615850e-47 |
Msa0136400 | Msa0554210 | 0.827042 | 1.946772e-54 | -8.615850e-47 |
Msa0136400 | Msa0648670 | 0.807022 | 6.191131e-50 | -8.615850e-47 |
Msa0136400 | Msa0694400 | 0.819520 | 1.112552e-52 | -8.615850e-47 |
Msa0136400 | Msa0796490 | 0.802437 | 5.613964e-49 | -8.615850e-47 |
Msa0136400 | Msa0877540 | 0.816065 | 6.700290e-52 | -8.615850e-47 |
Msa0136400 | Msa0930890 | 0.821370 | 4.186215e-53 | -8.615850e-47 |
Msa0136400 | Msa0943180 | 0.808059 | 3.730576e-50 | -8.615850e-47 |
Msa0136400 | Msa1093500 | 0.812049 | 5.155502e-51 | -8.615850e-47 |
Msa0136400 | Msa1136880 | 0.814137 | 1.795640e-51 | -8.615850e-47 |
Msa0136400 | Msa1207200 | 0.813357 | 2.666258e-51 | -8.615850e-47 |
Msa0136400 | Msa1211820 | 0.830629 | 2.636372e-55 | -8.615850e-47 |
Msa0136400 | Msa1235950 | 0.827594 | 1.435098e-54 | -8.615850e-47 |
Msa0136400 | Msa1235980 | 0.821818 | 3.297680e-53 | -8.615850e-47 |
Msa0136400 | Msa1257450 | 0.830964 | 2.182632e-55 | -8.615850e-47 |
Msa0136400 | Msa1299690 | 0.823545 | 1.307516e-53 | -8.615850e-47 |
Msa0136400 | Msa1305260 | 0.830686 | 2.553450e-55 | -8.615850e-47 |
Msa0136400 | Msa1332230 | 0.856680 | 2.731064e-62 | -8.615850e-47 |
Msa0136400 | Msa1341780 | 0.820025 | 8.529566e-53 | -8.615850e-47 |
Msa0136400 | Msa1344160 | 0.994960 | 9.860808e-212 | -8.615850e-47 |
Msa0136400 | Msa1344190 | 0.978200 | 2.488700e-145 | -8.615850e-47 |
Msa0136400 | Msa1385480 | 0.833987 | 3.888108e-56 | -8.615850e-47 |
Msa0136400 | Msa1433590 | 0.835791 | 1.366222e-56 | -8.615850e-47 |
Msa0136400 | Msa1465700 | 0.815492 | 8.991925e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0136400 | MtrunA17_Chr1g0207701 | 92.784 | 97 | 7 | 0 | 1 | 97 | 1 | 97 | 8.07e-48 | 147 |
Msa0136400 | MtrunA17_Chr5g0401651 | 49.495 | 99 | 37 | 4 | 1 | 95 | 1 | 90 | 4.80e-14 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0136400 | AT2G15000.5 | 55.238 | 105 | 41 | 4 | 1 | 103 | 1 | 101 | 3.58e-24 | 88.6 |
Msa0136400 | AT2G15000.7 | 55.238 | 105 | 41 | 4 | 1 | 103 | 1 | 101 | 3.58e-24 | 88.6 |
Msa0136400 | AT2G15000.4 | 55.238 | 105 | 41 | 4 | 1 | 103 | 1 | 101 | 3.58e-24 | 88.6 |
Msa0136400 | AT2G15000.6 | 55.238 | 105 | 41 | 4 | 1 | 103 | 1 | 101 | 3.58e-24 | 88.6 |
Msa0136400 | AT2G15000.1 | 53.608 | 97 | 39 | 4 | 1 | 95 | 1 | 93 | 3.93e-18 | 72.8 |
Msa0136400 | AT4G34265.5 | 46.491 | 114 | 34 | 5 | 1 | 103 | 1 | 98 | 1.07e-17 | 72.0 |
Msa0136400 | AT4G34265.4 | 46.491 | 114 | 34 | 5 | 1 | 103 | 1 | 98 | 1.07e-17 | 72.0 |
Msa0136400 | AT4G34265.3 | 46.491 | 114 | 34 | 5 | 1 | 103 | 1 | 98 | 1.07e-17 | 72.0 |
Msa0136400 | AT2G15000.3 | 53.125 | 96 | 39 | 4 | 1 | 94 | 1 | 92 | 1.82e-17 | 71.2 |
Msa0136400 | AT2G15000.2 | 53.125 | 96 | 39 | 4 | 1 | 94 | 1 | 92 | 1.82e-17 | 71.2 |
Msa0136400 | AT4G34265.2 | 44.340 | 106 | 32 | 5 | 1 | 95 | 1 | 90 | 9.76e-13 | 59.3 |
Msa0136400 | AT4G34265.1 | 43.396 | 106 | 33 | 5 | 1 | 95 | 1 | 90 | 4.07e-12 | 57.8 |
Msa0136400 | AT4G34265.6 | 43.396 | 106 | 33 | 5 | 1 | 95 | 1 | 90 | 4.07e-12 | 57.8 |
Find 75 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCGTGTTTCTTTCAGTATC+TGG | 0.204771 | 1_3:-68236154 | Msa0136400:three_prime_UTR |
CCATGCCTGCTACCTCTTCC+AGG | 0.234541 | 1_3:-68238532 | Msa0136400:intron |
GTGCAGGAATTTGGGGCAAT+TGG | 0.247985 | 1_3:-68238416 | Msa0136400:intron |
TTATTAATTCTTATTGTATC+TGG | 0.252121 | 1_3:-68236201 | Msa0136400:three_prime_UTR |
ATAATACTCCCCGTAATTAT+TGG | 0.253421 | 1_3:+68236338 | None:intergenic |
TAATTACGGGGAGTATTATC+TGG | 0.297004 | 1_3:-68236334 | Msa0136400:three_prime_UTR |
AAGTAAGGGATGCATGTTAC+AGG | 0.318032 | 1_3:-68236028 | Msa0136400:three_prime_UTR |
TCGTGTTTCTTTCAGTATCT+GGG | 0.377668 | 1_3:-68236153 | Msa0136400:three_prime_UTR |
TGCAGGAATTTGGGGCAATT+GGG | 0.381549 | 1_3:-68238415 | Msa0136400:intron |
ATATAGAGTGCCAATAATTA+CGG | 0.385464 | 1_3:-68236348 | Msa0136400:three_prime_UTR |
CGGAGGCGAGGAAGGGAAGA+AGG | 0.397485 | 1_3:+68238599 | None:intergenic |
ATAACAATGGCGTTGCGATC+TGG | 0.400559 | 1_3:-68238677 | Msa0136400:exon |
TGGCGAGTGGCGGAGGACGG+AGG | 0.410736 | 1_3:+68238582 | None:intergenic |
ATCGAGAGTGGAAACTAGAT+TGG | 0.413608 | 1_3:+68238765 | None:intergenic |
GAGAAATGGAGGGTACCATT+TGG | 0.417341 | 1_3:+68236094 | None:intergenic |
CGAGGGGTGGCGAGTGGCGG+AGG | 0.419804 | 1_3:+68238575 | None:intergenic |
TTTATAGGGAATGGAAAAGA+TGG | 0.419851 | 1_3:-68237967 | Msa0136400:intron |
ATGGAATAGGCTTTGAGAAA+TGG | 0.436563 | 1_3:+68236080 | None:intergenic |
GCGGAGGACGGAGGCGAGGA+AGG | 0.437115 | 1_3:+68238591 | None:intergenic |
TATAGAGTGCCAATAATTAC+GGG | 0.445156 | 1_3:-68236347 | Msa0136400:three_prime_UTR |
AGAAGGAGCCGCCGGACGAA+GGG | 0.456281 | 1_3:+68238616 | None:intergenic |
TATTGTTGTTAGTCATGAGT+TGG | 0.469273 | 1_3:-68236120 | Msa0136400:three_prime_UTR |
ATTGTTGTTAGTCATGAGTT+GGG | 0.471035 | 1_3:-68236119 | Msa0136400:three_prime_UTR |
AAGAGGCGGGGCTGAGTGCG+AGG | 0.481512 | 1_3:+68238557 | None:intergenic |
GGCCAGGTCTTCCCTTCGTC+CGG | 0.483656 | 1_3:-68238627 | Msa0136400:CDS |
AGCAGGCATGGAAAAGAGGC+GGG | 0.485396 | 1_3:+68238544 | None:intergenic |
AAGGACATCGATCATCCAAT+GGG | 0.489534 | 1_3:-68237935 | Msa0136400:three_prime_UTR |
AGACCTGGCCGTGGAGATGA+AGG | 0.492112 | 1_3:+68238640 | None:intergenic |
AACGCCATTGTTATGTGTAT+AGG | 0.495844 | 1_3:+68238686 | None:intergenic |
GAATAGGCTTTGAGAAATGG+AGG | 0.497614 | 1_3:+68236083 | None:intergenic |
GCTCCTTCATCTCCACGGCC+AGG | 0.498839 | 1_3:-68238643 | Msa0136400:CDS |
CGGAGGACGGAGGCGAGGAA+GGG | 0.500771 | 1_3:+68238592 | None:intergenic |
GTGCGAGGGGTGGCGAGTGG+CGG | 0.502077 | 1_3:+68238572 | None:intergenic |
CAGTTACTTGAGCAAGCTGT+TGG | 0.507883 | 1_3:-68236393 | Msa0136400:three_prime_UTR |
CAGCATTCGTCTCTCCCCAT+TGG | 0.512363 | 1_3:+68237920 | None:intergenic |
CCTGGAAGAGGTAGCAGGCA+TGG | 0.513058 | 1_3:+68238532 | None:intergenic |
CGCCGGACGAAGGGAAGACC+TGG | 0.513153 | 1_3:+68238625 | None:intergenic |
GGGTGGCGAGTGGCGGAGGA+CGG | 0.517554 | 1_3:+68238579 | None:intergenic |
TTAGGGTTTGGACCTGGAAG+AGG | 0.524458 | 1_3:+68238520 | None:intergenic |
TTGGACCTGGAAGAGGTAGC+AGG | 0.529380 | 1_3:+68238527 | None:intergenic |
AGGTAGCAGGCATGGAAAAG+AGG | 0.531493 | 1_3:+68238540 | None:intergenic |
AGTGGCGGAGGACGGAGGCG+AGG | 0.533816 | 1_3:+68238587 | None:intergenic |
ACGAAGGGAAGACCTGGCCG+TGG | 0.538799 | 1_3:+68238631 | None:intergenic |
AGAGGCGGGGCTGAGTGCGA+GGG | 0.539518 | 1_3:+68238558 | None:intergenic |
AAGAAGGAGCCGCCGGACGA+AGG | 0.539975 | 1_3:+68238615 | None:intergenic |
ATCTCGCTCCTTCATCTCCA+CGG | 0.540316 | 1_3:-68238648 | Msa0136400:CDS |
GAGTATTATCTGGGAAGTAA+TGG | 0.542717 | 1_3:-68236324 | Msa0136400:three_prime_UTR |
AAGCTCGTGCGCTGACGGCA+AGG | 0.543327 | 1_3:+68238332 | None:intergenic |
CGTCGTTCGATGAGAATTCG+AGG | 0.543913 | 1_3:-68238793 | Msa0136400:five_prime_UTR |
GAGGCGGGGCTGAGTGCGAG+GGG | 0.547076 | 1_3:+68238559 | None:intergenic |
GGAAGGGAAGAAGGAGCCGC+CGG | 0.548993 | 1_3:+68238608 | None:intergenic |
GCGGGGCTGAGTGCGAGGGG+TGG | 0.550387 | 1_3:+68238562 | None:intergenic |
TGAGTGCGAGGGGTGGCGAG+TGG | 0.550653 | 1_3:+68238569 | None:intergenic |
TTATAGGGAATGGAAAAGAT+GGG | 0.555551 | 1_3:-68237966 | Msa0136400:intron |
CAAGGACATCGATCATCCAA+TGG | 0.558518 | 1_3:-68237936 | Msa0136400:three_prime_UTR |
GCTACAAGCTCGTGCGCTGA+CGG | 0.567501 | 1_3:+68238327 | None:intergenic |
CGTGTTTCTTTCAGTATCTG+GGG | 0.571412 | 1_3:-68236152 | Msa0136400:three_prime_UTR |
AGAACGACGGAAGGTACCAT+TGG | 0.577356 | 1_3:+68238297 | None:intergenic |
TAGCAGGCATGGAAAAGAGG+CGG | 0.583179 | 1_3:+68238543 | None:intergenic |
AATTACGGGGAGTATTATCT+GGG | 0.583825 | 1_3:-68236333 | Msa0136400:three_prime_UTR |
TTTGTTGGTGCAGGAATTTG+GGG | 0.587970 | 1_3:-68238423 | Msa0136400:intron |
GCTTGTAGCGAGCTGTCCAA+TGG | 0.595505 | 1_3:-68238313 | Msa0136400:CDS |
GAAAAGATGGGTGATGCGCA+AGG | 0.615793 | 1_3:-68237954 | Msa0136400:three_prime_UTR |
ACAGCCATCGTGCTATGCAG+TGG | 0.621490 | 1_3:+68238373 | None:intergenic |
ATCTTGACAAGAACGACGGA+AGG | 0.626544 | 1_3:+68238288 | None:intergenic |
CAGGTCTTCCCTTCGTCCGG+CGG | 0.627826 | 1_3:-68238624 | Msa0136400:CDS |
GTCATGAGTTGGGATCCAAA+TGG | 0.640332 | 1_3:-68236109 | Msa0136400:three_prime_UTR |
GCAGGCATGGAAAAGAGGCG+GGG | 0.645770 | 1_3:+68238545 | None:intergenic |
TTTGCCACTGCATAGCACGA+TGG | 0.666045 | 1_3:-68238377 | Msa0136400:CDS |
TTCTCCTATACACATAACAA+TGG | 0.666341 | 1_3:-68238690 | Msa0136400:exon |
AATAGGCTTTGAGAAATGGA+GGG | 0.681330 | 1_3:+68236084 | None:intergenic |
TAAGGGATGCATGTTACAGG+CGG | 0.682564 | 1_3:-68236025 | Msa0136400:three_prime_UTR |
AGCGATCTTGACAAGAACGA+CGG | 0.707528 | 1_3:+68238284 | None:intergenic |
ATAGAGTGCCAATAATTACG+GGG | 0.755091 | 1_3:-68236346 | Msa0136400:three_prime_UTR |
AGGACATCGATCATCCAATG+GGG | 0.763566 | 1_3:-68237934 | Msa0136400:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTATTAAGATTTTAATTTAT+AGG | - | chr1_3:68236832-68236851 | Msa0136400:intron | 10.0% |
!!! | TTTAAATTTTCATAATCTCA+AGG | + | chr1_3:68237099-68237118 | None:intergenic | 15.0% |
!! | TAGTAAGTTGTTAAAATATA+TGG | - | chr1_3:68237190-68237209 | Msa0136400:intron | 15.0% |
!! | AAAATAAAGAATTTGTAGTT+GGG | + | chr1_3:68237942-68237961 | None:intergenic | 15.0% |
!! | TAAAAATACTTAGTATTACA+CGG | + | chr1_3:68238383-68238402 | None:intergenic | 15.0% |
!! | TTATTAATTCTTATTGTATC+TGG | - | chr1_3:68238613-68238632 | Msa0136400:CDS | 15.0% |
!!! | AAGAGTTTTTTTTTTTTGTA+TGG | + | chr1_3:68238760-68238779 | None:intergenic | 15.0% |
!!! | AAAACTCTTTATTTTAAGTA+AGG | - | chr1_3:68238771-68238790 | Msa0136400:five_prime_UTR | 15.0% |
!!! | AAACTCTTTATTTTAAGTAA+GGG | - | chr1_3:68238772-68238791 | Msa0136400:five_prime_UTR | 15.0% |
!!! | CAACATGATTAAAACATTTT+CGG | + | chr1_3:68236594-68236613 | None:intergenic | 20.0% |
!!! | AAAAAACACATTTTTGTGAA+GGG | + | chr1_3:68236640-68236659 | None:intergenic | 20.0% |
!!! | AAAAAAACACATTTTTGTGA+AGG | + | chr1_3:68236641-68236660 | None:intergenic | 20.0% |
!!! | AGATTTTAATTTATAGGGAA+TGG | - | chr1_3:68236838-68236857 | Msa0136400:intron | 20.0% |
!!! | ATTTTGACAAAGGAATAAAA+GGG | + | chr1_3:68236937-68236956 | None:intergenic | 20.0% |
!!! | AATTTTGACAAAGGAATAAA+AGG | + | chr1_3:68236938-68236957 | None:intergenic | 20.0% |
!!! | TGAATTCATAATTTTGACAA+AGG | + | chr1_3:68236947-68236966 | None:intergenic | 20.0% |
!! | AACAGTAAGTGTTTAAATAT+CGG | - | chr1_3:68237221-68237240 | Msa0136400:intron | 20.0% |
!! | AAGAATGAAAAATGAACATT+CGG | + | chr1_3:68237364-68237383 | None:intergenic | 20.0% |
!! | TATTAGAATAACTGATGAAA+GGG | + | chr1_3:68237804-68237823 | None:intergenic | 20.0% |
!! | TGTTTAACCATAATAACAAT+GGG | + | chr1_3:68237892-68237911 | None:intergenic | 20.0% |
!! | ATGTTTAACCATAATAACAA+TGG | + | chr1_3:68237893-68237912 | None:intergenic | 20.0% |
!! | CAAAATAAAGAATTTGTAGT+TGG | + | chr1_3:68237943-68237962 | None:intergenic | 20.0% |
!!! | TTTGAAAAATGAGATTTTTG+TGG | - | chr1_3:68237959-68237978 | Msa0136400:three_prime_UTR | 20.0% |
!! | AAAAACAGAAATTTCCAAAA+AGG | + | chr1_3:68238230-68238249 | None:intergenic | 20.0% |
!! | AATATAAAAAACAGGTTCTT+TGG | + | chr1_3:68238567-68238586 | None:intergenic | 20.0% |
!! | ACAGTTTGAATATAAAAAAC+AGG | + | chr1_3:68238575-68238594 | None:intergenic | 20.0% |
!!! | GTTTTTTTTTTTTGTATGGA+TGG | + | chr1_3:68238756-68238775 | None:intergenic | 20.0% |
!! | TCACAAAGAAAGAGTTTTTA+GGG | + | chr1_3:68236104-68236123 | None:intergenic | 25.0% |
!! | ATCACAAAGAAAGAGTTTTT+AGG | + | chr1_3:68236105-68236124 | None:intergenic | 25.0% |
!!! | TCTGAATGTGTTTTTTTTGT+TGG | - | chr1_3:68236376-68236395 | Msa0136400:three_prime_UTR | 25.0% |
!! | AAAAACACATTTTTGTGAAG+GGG | + | chr1_3:68236639-68236658 | None:intergenic | 25.0% |
!! | TTTCTAAGGAAAAATCTAAC+TGG | + | chr1_3:68237040-68237059 | None:intergenic | 25.0% |
! | ACAGTAAGTGTTTAAATATC+GGG | - | chr1_3:68237222-68237241 | Msa0136400:intron | 25.0% |
! | CAATAAAATACCACATACAA+TGG | + | chr1_3:68237433-68237452 | None:intergenic | 25.0% |
!!! | TCTTAGGTTTTGATTCATTT+AGG | + | chr1_3:68237507-68237526 | None:intergenic | 25.0% |
!!! | TTTTTCAACTAGAAGTATAG+AGG | - | chr1_3:68237650-68237669 | Msa0136400:intron | 25.0% |
! | GTATTAGAATAACTGATGAA+AGG | + | chr1_3:68237805-68237824 | None:intergenic | 25.0% |
!! | CTAAATTCCCATTGTTATTA+TGG | - | chr1_3:68237882-68237901 | Msa0136400:intron | 25.0% |
!! | ATATAGAGTGCCAATAATTA+CGG | - | chr1_3:68238466-68238485 | Msa0136400:intron | 25.0% |
!!! | TTCTTATTGTATCTGGTTTT+TGG | - | chr1_3:68238620-68238639 | Msa0136400:CDS | 25.0% |
!!! | TTTTTTTGTATGGATGGAAT+AGG | + | chr1_3:68238750-68238769 | None:intergenic | 25.0% |
! | TTCAGATTTTTAATCGAGAG+TGG | + | chr1_3:68236064-68236083 | None:intergenic | 30.0% |
TTCTCCTATACACATAACAA+TGG | - | chr1_3:68236124-68236143 | Msa0136400:three_prime_UTR | 30.0% | |
TCTAGAAATCCTTAGATTGT+AGG | - | chr1_3:68236708-68236727 | Msa0136400:intron | 30.0% | |
CTAATTGTACCTACAATCTA+AGG | + | chr1_3:68236720-68236739 | None:intergenic | 30.0% | |
TTTATAGGGAATGGAAAAGA+TGG | - | chr1_3:68236847-68236866 | Msa0136400:intron | 30.0% | |
TTATAGGGAATGGAAAAGAT+GGG | - | chr1_3:68236848-68236867 | Msa0136400:intron | 30.0% | |
! | TCCTTCTTAAGAGTATGTTA+GGG | - | chr1_3:68237157-68237176 | Msa0136400:intron | 30.0% |
CTGACAGTTTAATAGAGTAA+GGG | - | chr1_3:68237251-68237270 | Msa0136400:intron | 30.0% | |
TGACAGTTTAATAGAGTAAG+GGG | - | chr1_3:68237252-68237271 | Msa0136400:intron | 30.0% | |
!! | CAATCAATTTTGTTTCCCTT+GGG | - | chr1_3:68237402-68237421 | Msa0136400:intron | 30.0% |
! | GAAGATATTTTCTGAGTAAG+CGG | - | chr1_3:68237461-68237480 | Msa0136400:intron | 30.0% |
!! | TTTTGATTCATTTAGGACTG+AGG | + | chr1_3:68237500-68237519 | None:intergenic | 30.0% |
ATCATTAGGGATACAATCTT+AGG | + | chr1_3:68237523-68237542 | None:intergenic | 30.0% | |
! | GATTGTATCCCTAATGATTT+TGG | - | chr1_3:68237525-68237544 | Msa0136400:intron | 30.0% |
TAGCAATGCCAAAATCATTA+GGG | + | chr1_3:68237536-68237555 | None:intergenic | 30.0% | |
! | GTGTAGAAACTTGATAACAT+GGG | + | chr1_3:68237588-68237607 | None:intergenic | 30.0% |
TGACAATAGCATTTCAAGAA+AGG | + | chr1_3:68237610-68237629 | None:intergenic | 30.0% | |
AAAGTGAACGAATTTATGCA+TGG | + | chr1_3:68237729-68237748 | None:intergenic | 30.0% | |
CTGAAGATTTCAAATTGTCT+TGG | + | chr1_3:68238019-68238038 | None:intergenic | 30.0% | |
! | CAAGACAATTTGAAATCTTC+AGG | - | chr1_3:68238017-68238036 | Msa0136400:intron | 30.0% |
!!! | AGTCTGTATTTTTAGTGTGA+AGG | - | chr1_3:68238067-68238086 | Msa0136400:intron | 30.0% |
! | AGGGTACTATTTATGAAAGT+GGG | - | chr1_3:68238313-68238332 | Msa0136400:CDS | 30.0% |
! | TATAGAGTGCCAATAATTAC+GGG | - | chr1_3:68238467-68238486 | Msa0136400:intron | 30.0% |
ATAATACTCCCCGTAATTAT+TGG | + | chr1_3:68238479-68238498 | None:intergenic | 30.0% | |
!!! | TCTGTTATGTTTTTTGACTC+CGG | - | chr1_3:68238540-68238559 | Msa0136400:CDS | 30.0% |
! | TATTGTTGTTAGTCATGAGT+TGG | - | chr1_3:68238694-68238713 | Msa0136400:five_prime_UTR | 30.0% |
! | ATTGTTGTTAGTCATGAGTT+GGG | - | chr1_3:68238695-68238714 | Msa0136400:five_prime_UTR | 30.0% |
!!! | GAGTTTTTAGGGTTTTGTGA+GGG | + | chr1_3:68236093-68236112 | None:intergenic | 35.0% |
!!! | AGAGTTTTTAGGGTTTTGTG+AGG | + | chr1_3:68236094-68236113 | None:intergenic | 35.0% |
AACGCCATTGTTATGTGTAT+AGG | + | chr1_3:68236131-68236150 | None:intergenic | 35.0% | |
TTGAATTGGGAATTAGGGTT+TGG | + | chr1_3:68236309-68236328 | None:intergenic | 35.0% | |
TGAGCTTGAATTGGGAATTA+GGG | + | chr1_3:68236314-68236333 | None:intergenic | 35.0% | |
TTGAGCTTGAATTGGGAATT+AGG | + | chr1_3:68236315-68236334 | None:intergenic | 35.0% | |
ATTGTCGTTGAGCTTGAATT+GGG | + | chr1_3:68236322-68236341 | None:intergenic | 35.0% | |
!!! | TGTGTTTTTTTTGTTGGTGC+AGG | - | chr1_3:68236382-68236401 | Msa0136400:three_prime_UTR | 35.0% |
! | TTTTTGTTGGTGCAGGAATT+TGG | - | chr1_3:68236389-68236408 | Msa0136400:three_prime_UTR | 35.0% |
! | TTTTGTTGGTGCAGGAATTT+GGG | - | chr1_3:68236390-68236409 | Msa0136400:three_prime_UTR | 35.0% |
AAGGGGTCTGAAAATCATTA+TGG | + | chr1_3:68236622-68236641 | None:intergenic | 35.0% | |
! | TTTTGCTTCATGTGAAGAGA+TGG | - | chr1_3:68236763-68236782 | Msa0136400:intron | 35.0% |
! | TTCATGTGAAGAGATGGATT+GGG | - | chr1_3:68236769-68236788 | Msa0136400:intron | 35.0% |
!! | GAATGCTGCTTTCTATTTGT+AGG | - | chr1_3:68236909-68236928 | Msa0136400:intron | 35.0% |
CATCTCTAACAATCATCAAC+CGG | + | chr1_3:68237007-68237026 | None:intergenic | 35.0% | |
GATGATTGTTAGAGATGATC+TGG | - | chr1_3:68237010-68237029 | Msa0136400:intron | 35.0% | |
! | GTCCTTCTTAAGAGTATGTT+AGG | - | chr1_3:68237156-68237175 | Msa0136400:intron | 35.0% |
TCCCTAACATACTCTTAAGA+AGG | + | chr1_3:68237161-68237180 | None:intergenic | 35.0% | |
ACTCTATTAAACTGTCAGGT+TGG | + | chr1_3:68237249-68237268 | None:intergenic | 35.0% | |
CCTTACTCTATTAAACTGTC+AGG | + | chr1_3:68237253-68237272 | None:intergenic | 35.0% | |
CCTGACAGTTTAATAGAGTA+AGG | - | chr1_3:68237250-68237269 | Msa0136400:intron | 35.0% | |
AAATTAACCCTCGACTTTGT+AGG | + | chr1_3:68237320-68237339 | None:intergenic | 35.0% | |
TACAAAGTCGAGGGTTAATT+TGG | - | chr1_3:68237319-68237338 | Msa0136400:intron | 35.0% | |
!! | GAACATTCGGTTTTGATGTT+TGG | + | chr1_3:68237351-68237370 | None:intergenic | 35.0% |
!! | GCAATCAATTTTGTTTCCCT+TGG | - | chr1_3:68237401-68237420 | Msa0136400:intron | 35.0% |
CTAGCAATGCCAAAATCATT+AGG | + | chr1_3:68237537-68237556 | None:intergenic | 35.0% | |
!! | CTAATGATTTTGGCATTGCT+AGG | - | chr1_3:68237535-68237554 | Msa0136400:intron | 35.0% |
! | GGTGTAGAAACTTGATAACA+TGG | + | chr1_3:68237589-68237608 | None:intergenic | 35.0% |
! | CCATCTACATGACATTTTGA+GGG | + | chr1_3:68237679-68237698 | None:intergenic | 35.0% |
CCTCAAAATGTCATGTAGAT+GGG | - | chr1_3:68237677-68237696 | Msa0136400:intron | 35.0% | |
AATTTGTAGTTGGGTCAAAG+AGG | + | chr1_3:68237933-68237952 | None:intergenic | 35.0% | |
AATCTTCAGGAAGTTTGTCA+TGG | - | chr1_3:68238030-68238049 | Msa0136400:intron | 35.0% | |
AGGACTGCTTACTATACTTA+AGG | - | chr1_3:68238169-68238188 | Msa0136400:intron | 35.0% | |
! | CTTAAGGTCTTTGTTTGAAG+TGG | - | chr1_3:68238185-68238204 | Msa0136400:intron | 35.0% |
! | GTGTTATGACAACTCCTTTT+TGG | - | chr1_3:68238213-68238232 | Msa0136400:intron | 35.0% |
!! | GAGGGTACTATTTATGAAAG+TGG | - | chr1_3:68238312-68238331 | Msa0136400:CDS | 35.0% |
! | ATAGAGTGCCAATAATTACG+GGG | - | chr1_3:68238468-68238487 | Msa0136400:intron | 35.0% |
!! | TAATTACGGGGAGTATTATC+TGG | - | chr1_3:68238480-68238499 | Msa0136400:intron | 35.0% |
!! | AATTACGGGGAGTATTATCT+GGG | - | chr1_3:68238481-68238500 | Msa0136400:intron | 35.0% |
GAGTATTATCTGGGAAGTAA+TGG | - | chr1_3:68238490-68238509 | Msa0136400:intron | 35.0% | |
AAAAAACAGGTTCTTTGGTC+CGG | + | chr1_3:68238562-68238581 | None:intergenic | 35.0% | |
ATCGTGTTTCTTTCAGTATC+TGG | - | chr1_3:68238660-68238679 | Msa0136400:CDS | 35.0% | |
TCGTGTTTCTTTCAGTATCT+GGG | - | chr1_3:68238661-68238680 | Msa0136400:CDS | 35.0% | |
!! | AATAGGCTTTGAGAAATGGA+GGG | + | chr1_3:68238733-68238752 | None:intergenic | 35.0% |
!! | ATGGAATAGGCTTTGAGAAA+TGG | + | chr1_3:68238737-68238756 | None:intergenic | 35.0% |
ATCGAGAGTGGAAACTAGAT+TGG | + | chr1_3:68236052-68236071 | None:intergenic | 40.0% | |
CATTGTCGTTGAGCTTGAAT+TGG | + | chr1_3:68236323-68236342 | None:intergenic | 40.0% | |
TTTGTTGGTGCAGGAATTTG+GGG | - | chr1_3:68236391-68236410 | Msa0136400:three_prime_UTR | 40.0% | |
! | GTGAGTCTTGTCTGTTCTAT+AGG | - | chr1_3:68236565-68236584 | Msa0136400:intron | 40.0% |
CTTCATGTGAAGAGATGGAT+TGG | - | chr1_3:68236768-68236787 | Msa0136400:intron | 40.0% | |
! | TTTGTGAGTCTGTCTAGCTT+TGG | - | chr1_3:68236798-68236817 | Msa0136400:intron | 40.0% |
AAGGACATCGATCATCCAAT+GGG | - | chr1_3:68236879-68236898 | Msa0136400:intron | 40.0% | |
GATTGTTAGAGATGATCTGG+AGG | - | chr1_3:68237013-68237032 | Msa0136400:intron | 40.0% | |
CGGTCAAGGATGAATTTCTA+AGG | + | chr1_3:68237054-68237073 | None:intergenic | 40.0% | |
CATACAATGGAAATGCCCAA+GGG | + | chr1_3:68237420-68237439 | None:intergenic | 40.0% | |
ACATACAATGGAAATGCCCA+AGG | + | chr1_3:68237421-68237440 | None:intergenic | 40.0% | |
TTGGGCATTTCCATTGTATG+TGG | - | chr1_3:68237420-68237439 | Msa0136400:intron | 40.0% | |
CCCTCAAAATGTCATGTAGA+TGG | - | chr1_3:68237676-68237695 | Msa0136400:intron | 40.0% | |
! | CCCATCTACATGACATTTTG+AGG | + | chr1_3:68237680-68237699 | None:intergenic | 40.0% |
TCATGTAGATGGGAAACTCT+TGG | - | chr1_3:68237687-68237706 | Msa0136400:intron | 40.0% | |
CTGGAAAAACAGCCATTTCA+AGG | + | chr1_3:68237781-68237800 | None:intergenic | 40.0% | |
AGAATAACTGATGAAAGGGC+TGG | + | chr1_3:68237800-68237819 | None:intergenic | 40.0% | |
GTAAACTCCATTCCTTTCAC+AGG | - | chr1_3:68237834-68237853 | Msa0136400:intron | 40.0% | |
! | GGAATTTAGAACATCACCTC+AGG | + | chr1_3:68237871-68237890 | None:intergenic | 40.0% |
! | AGCAAGCTGTTGGATTTTCA+TGG | - | chr1_3:68238431-68238450 | Msa0136400:intron | 40.0% |
CGTGTTTCTTTCAGTATCTG+GGG | - | chr1_3:68238662-68238681 | Msa0136400:CDS | 40.0% | |
!! | GAATAGGCTTTGAGAAATGG+AGG | + | chr1_3:68238734-68238753 | None:intergenic | 40.0% |
AAGTAAGGGATGCATGTTAC+AGG | - | chr1_3:68238786-68238805 | Msa0136400:five_prime_UTR | 40.0% | |
ATAACAATGGCGTTGCGATC+TGG | - | chr1_3:68236137-68236156 | Msa0136400:three_prime_UTR | 45.0% | |
! | TGCAGGAATTTGGGGCAATT+GGG | - | chr1_3:68236399-68236418 | Msa0136400:intron | 45.0% |
ATCTTGACAAGAACGACGGA+AGG | + | chr1_3:68236529-68236548 | None:intergenic | 45.0% | |
AGCGATCTTGACAAGAACGA+CGG | + | chr1_3:68236533-68236552 | None:intergenic | 45.0% | |
CAAGGACATCGATCATCCAA+TGG | - | chr1_3:68236878-68236897 | Msa0136400:intron | 45.0% | |
AGGACATCGATCATCCAATG+GGG | - | chr1_3:68236880-68236899 | Msa0136400:intron | 45.0% | |
AAATTCATCCTTGACCGTGC+AGG | - | chr1_3:68237057-68237076 | Msa0136400:intron | 45.0% | |
AATTCATCCTTGACCGTGCA+GGG | - | chr1_3:68237058-68237077 | Msa0136400:intron | 45.0% | |
TTTCAAGGACGACACTTGCA+GGG | + | chr1_3:68237766-68237785 | None:intergenic | 45.0% | |
ATTTCAAGGACGACACTTGC+AGG | + | chr1_3:68237767-68237786 | None:intergenic | 45.0% | |
! | TGCAAGTGTCGTCCTTGAAA+TGG | - | chr1_3:68237766-68237785 | Msa0136400:intron | 45.0% |
AGGATCACCTGTGAAAGGAA+TGG | + | chr1_3:68237844-68237863 | None:intergenic | 45.0% | |
GAATCAGGATCACCTGTGAA+AGG | + | chr1_3:68237849-68237868 | None:intergenic | 45.0% | |
AGAACATCACCTCAGGAATC+AGG | + | chr1_3:68237864-68237883 | None:intergenic | 45.0% | |
! | AGGTCTTTGTTTGAAGTGGC+TGG | - | chr1_3:68238189-68238208 | Msa0136400:intron | 45.0% |
AAGTGGGATGATCTGATGAC+AGG | - | chr1_3:68238329-68238348 | Msa0136400:CDS | 45.0% | |
CAGTTACTTGAGCAAGCTGT+TGG | - | chr1_3:68238421-68238440 | Msa0136400:intron | 45.0% | |
! | GTCATGAGTTGGGATCCAAA+TGG | - | chr1_3:68238705-68238724 | Msa0136400:five_prime_UTR | 45.0% |
!! | GAGAAATGGAGGGTACCATT+TGG | + | chr1_3:68238723-68238742 | None:intergenic | 45.0% |
TAAGGGATGCATGTTACAGG+CGG | - | chr1_3:68238789-68238808 | Msa0136400:five_prime_UTR | 45.0% | |
!!! | TATTAAGATTTTAATTTATA+GGG | - | chr1_3:68236833-68236852 | Msa0136400:intron | 5.0% |
!! | ATAAAAATAAAATTTATATC+AGG | - | chr1_3:68238149-68238168 | Msa0136400:intron | 5.0% |
!!! | GTTTTTTTTTTTTTTTTTTA+TGG | - | chr1_3:68238244-68238263 | Msa0136400:intron | 5.0% |
CGTCGTTCGATGAGAATTCG+AGG | - | chr1_3:68236021-68236040 | Msa0136400:three_prime_UTR | 50.0% | |
ATCTCGCTCCTTCATCTCCA+CGG | - | chr1_3:68236166-68236185 | Msa0136400:three_prime_UTR | 50.0% | |
TAGCAGGCATGGAAAAGAGG+CGG | + | chr1_3:68236274-68236293 | None:intergenic | 50.0% | |
AGGTAGCAGGCATGGAAAAG+AGG | + | chr1_3:68236277-68236296 | None:intergenic | 50.0% | |
TTAGGGTTTGGACCTGGAAG+AGG | + | chr1_3:68236297-68236316 | None:intergenic | 50.0% | |
TGGGAATTAGGGTTTGGACC+TGG | + | chr1_3:68236303-68236322 | None:intergenic | 50.0% | |
! | GTGCAGGAATTTGGGGCAAT+TGG | - | chr1_3:68236398-68236417 | Msa0136400:intron | 50.0% |
TTTGCCACTGCATAGCACGA+TGG | - | chr1_3:68236437-68236456 | Msa0136400:intron | 50.0% | |
!! | AGAACGACGGAAGGTACCAT+TGG | + | chr1_3:68236520-68236539 | None:intergenic | 50.0% |
GAAAAGATGGGTGATGCGCA+AGG | - | chr1_3:68236860-68236879 | Msa0136400:intron | 50.0% | |
ACAGGTGATCCTGATTCCTG+AGG | - | chr1_3:68237852-68237871 | Msa0136400:intron | 50.0% | |
AGCAGGCATGGAAAAGAGGC+GGG | + | chr1_3:68236273-68236292 | None:intergenic | 55.0% | |
TTGGACCTGGAAGAGGTAGC+AGG | + | chr1_3:68236290-68236309 | None:intergenic | 55.0% | |
ACAGCCATCGTGCTATGCAG+TGG | + | chr1_3:68236444-68236463 | None:intergenic | 55.0% | |
GCTTGTAGCGAGCTGTCCAA+TGG | - | chr1_3:68236501-68236520 | Msa0136400:intron | 55.0% | |
CAGCATTCGTCTCTCCCCAT+TGG | + | chr1_3:68236897-68236916 | None:intergenic | 55.0% | |
TGTGCGTGTGAGTGAGTGAC+CGG | - | chr1_3:68236985-68237004 | Msa0136400:intron | 55.0% | |
!! | CAATTTGAGAGCGCCCTGCA+CGG | + | chr1_3:68237074-68237093 | None:intergenic | 55.0% |
!! | TGAGAGCGCCTACAAAGTCG+AGG | - | chr1_3:68237309-68237328 | Msa0136400:intron | 55.0% |
!! | GAGAGCGCCTACAAAGTCGA+GGG | - | chr1_3:68237310-68237329 | Msa0136400:intron | 55.0% |
ATGCATGCTCGTGAGTCGTG+AGG | - | chr1_3:68238293-68238312 | Msa0136400:CDS | 55.0% | |
TGCATGCTCGTGAGTCGTGA+GGG | - | chr1_3:68238294-68238313 | Msa0136400:CDS | 55.0% | |
AGACCTGGCCGTGGAGATGA+AGG | + | chr1_3:68236177-68236196 | None:intergenic | 60.0% | |
GCAGGCATGGAAAAGAGGCG+GGG | + | chr1_3:68236272-68236291 | None:intergenic | 60.0% | |
CCTGGAAGAGGTAGCAGGCA+TGG | + | chr1_3:68236285-68236304 | None:intergenic | 60.0% | |
CCATGCCTGCTACCTCTTCC+AGG | - | chr1_3:68236282-68236301 | Msa0136400:three_prime_UTR | 60.0% | |
GCTACAAGCTCGTGCGCTGA+CGG | + | chr1_3:68236490-68236509 | None:intergenic | 60.0% | |
! | CGTGCAGGGCGCTCTCAAAT+TGG | - | chr1_3:68237072-68237091 | Msa0136400:intron | 60.0% |
GCTCCTTCATCTCCACGGCC+AGG | - | chr1_3:68236171-68236190 | Msa0136400:three_prime_UTR | 65.0% | |
ACGAAGGGAAGACCTGGCCG+TGG | + | chr1_3:68236186-68236205 | None:intergenic | 65.0% | |
GGCCAGGTCTTCCCTTCGTC+CGG | - | chr1_3:68236187-68236206 | Msa0136400:three_prime_UTR | 65.0% | |
CAGGTCTTCCCTTCGTCCGG+CGG | - | chr1_3:68236190-68236209 | Msa0136400:three_prime_UTR | 65.0% | |
AGAAGGAGCCGCCGGACGAA+GGG | + | chr1_3:68236201-68236220 | None:intergenic | 65.0% | |
AAGAAGGAGCCGCCGGACGA+AGG | + | chr1_3:68236202-68236221 | None:intergenic | 65.0% | |
GGAAGGGAAGAAGGAGCCGC+CGG | + | chr1_3:68236209-68236228 | None:intergenic | 65.0% | |
CGGAGGCGAGGAAGGGAAGA+AGG | + | chr1_3:68236218-68236237 | None:intergenic | 65.0% | |
! | AAGCTCGTGCGCTGACGGCA+AGG | + | chr1_3:68236485-68236504 | None:intergenic | 65.0% |
CGCCGGACGAAGGGAAGACC+TGG | + | chr1_3:68236192-68236211 | None:intergenic | 70.0% | |
CGGAGGACGGAGGCGAGGAA+GGG | + | chr1_3:68236225-68236244 | None:intergenic | 70.0% | |
TGAGTGCGAGGGGTGGCGAG+TGG | + | chr1_3:68236248-68236267 | None:intergenic | 70.0% | |
AGAGGCGGGGCTGAGTGCGA+GGG | + | chr1_3:68236259-68236278 | None:intergenic | 70.0% | |
AAGAGGCGGGGCTGAGTGCG+AGG | + | chr1_3:68236260-68236279 | None:intergenic | 70.0% | |
!! | GAGAGCGCCCTGCACGGTCA+AGG | + | chr1_3:68237068-68237087 | None:intergenic | 70.0% |
GCGGAGGACGGAGGCGAGGA+AGG | + | chr1_3:68236226-68236245 | None:intergenic | 75.0% | |
! | AGTGGCGGAGGACGGAGGCG+AGG | + | chr1_3:68236230-68236249 | None:intergenic | 75.0% |
! | TGGCGAGTGGCGGAGGACGG+AGG | + | chr1_3:68236235-68236254 | None:intergenic | 75.0% |
! | GGGTGGCGAGTGGCGGAGGA+CGG | + | chr1_3:68236238-68236257 | None:intergenic | 75.0% |
GTGCGAGGGGTGGCGAGTGG+CGG | + | chr1_3:68236245-68236264 | None:intergenic | 75.0% | |
GAGGCGGGGCTGAGTGCGAG+GGG | + | chr1_3:68236258-68236277 | None:intergenic | 75.0% | |
! | CGAGGGGTGGCGAGTGGCGG+AGG | + | chr1_3:68236242-68236261 | None:intergenic | 80.0% |
! | GCGGGGCTGAGTGCGAGGGG+TGG | + | chr1_3:68236255-68236274 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 68236003 | 68238833 | 68236003 | ID=Msa0136400;Name=Msa0136400 |
chr1_3 | mRNA | 68236003 | 68238833 | 68236003 | ID=Msa0136400-mRNA-1;Parent=Msa0136400;Name=Msa0136400-mRNA-1;_AED=0.16;_eAED=0.16;_QI=140|1|1|1|0.33|0.75|4|493|103 |
chr1_3 | exon | 68236003 | 68236412 | 68236003 | ID=Msa0136400-mRNA-1:exon:23584;Parent=Msa0136400-mRNA-1 |
chr1_3 | exon | 68237910 | 68237982 | 68237910 | ID=Msa0136400-mRNA-1:exon:23583;Parent=Msa0136400-mRNA-1 |
chr1_3 | exon | 68238272 | 68238432 | 68238272 | ID=Msa0136400-mRNA-1:exon:23582;Parent=Msa0136400-mRNA-1 |
chr1_3 | exon | 68238533 | 68238833 | 68238533 | ID=Msa0136400-mRNA-1:exon:23581;Parent=Msa0136400-mRNA-1 |
chr1_3 | five_prime_UTR | 68238694 | 68238833 | 68238694 | ID=Msa0136400-mRNA-1:five_prime_utr;Parent=Msa0136400-mRNA-1 |
chr1_3 | CDS | 68238533 | 68238693 | 68238533 | ID=Msa0136400-mRNA-1:cds;Parent=Msa0136400-mRNA-1 |
chr1_3 | CDS | 68238282 | 68238432 | 68238282 | ID=Msa0136400-mRNA-1:cds;Parent=Msa0136400-mRNA-1 |
chr1_3 | three_prime_UTR | 68238272 | 68238281 | 68238272 | ID=Msa0136400-mRNA-1:three_prime_utr;Parent=Msa0136400-mRNA-1 |
chr1_3 | three_prime_UTR | 68237910 | 68237982 | 68237910 | ID=Msa0136400-mRNA-1:three_prime_utr;Parent=Msa0136400-mRNA-1 |
chr1_3 | three_prime_UTR | 68236003 | 68236412 | 68236003 | ID=Msa0136400-mRNA-1:three_prime_utr;Parent=Msa0136400-mRNA-1 |
Gene Sequence |
Protein sequence |