AlfalfaGEDB | Msa1344160

M. sativa cultivar zhongmu-4 / Msa1344160

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344160	XP_013470020.1	96.117	103	4	0	1	103	1	103	1.20e-60	190

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344160	A0A072VRJ2	96.117	103	4	0	1	103	1	103	5.74e-61	190

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002430	Msa1344160	0.832167	1.103013e-55	-8.615850e-47
Msa0136400	Msa1344160	0.994960	9.860808e-212	-8.615850e-47
Msa0167860	Msa1344160	0.837138	6.201767e-57	-8.615850e-47
Msa0192490	Msa1344160	0.800323	1.520931e-48	-8.615850e-47
Msa0223240	Msa1344160	0.801175	1.019443e-48	-8.615850e-47
Msa0315430	Msa1344160	0.801336	9.448642e-49	-8.615850e-47
Msa0337750	Msa1344160	0.814787	1.289689e-51	-8.615850e-47
Msa0383690	Msa1344160	0.858423	8.320741e-63	-8.615850e-47
Msa0547920	Msa1344160	0.808628	2.820863e-50	-8.615850e-47
Msa0550490	Msa1344160	0.815610	8.462428e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344160	MtrunA17_Chr1g0207701	92.784	97	7	0	1	97	1	97	8.07e-48	147
Msa1344160	MtrunA17_Chr5g0401651	49.495	99	37	4	1	95	1	90	4.80e-14	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344160	AT2G15000.5	55.238	105	41	4	1	103	1	101	3.58e-24	88.6
Msa1344160	AT2G15000.7	55.238	105	41	4	1	103	1	101	3.58e-24	88.6
Msa1344160	AT2G15000.4	55.238	105	41	4	1	103	1	101	3.58e-24	88.6
Msa1344160	AT2G15000.6	55.238	105	41	4	1	103	1	101	3.58e-24	88.6
Msa1344160	AT2G15000.1	53.608	97	39	4	1	95	1	93	3.93e-18	72.8
Msa1344160	AT4G34265.5	46.491	114	34	5	1	103	1	98	1.07e-17	72.0
Msa1344160	AT4G34265.4	46.491	114	34	5	1	103	1	98	1.07e-17	72.0
Msa1344160	AT4G34265.3	46.491	114	34	5	1	103	1	98	1.07e-17	72.0
Msa1344160	AT2G15000.3	53.125	96	39	4	1	94	1	92	1.82e-17	71.2
Msa1344160	AT2G15000.2	53.125	96	39	4	1	94	1	92	1.82e-17	71.2

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Find 75 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGCCATTGTTATGTGTAT+AGG	0.495844	tig0006800:+8158	None:intergenic
AAGAAGGAGCCGCCGGACGA+AGG	0.539975	tig0006800:+8087	None:intergenic
AAGAGGCGGGGCTGAGTGCG+AGG	0.481512	tig0006800:+8029	None:intergenic
AAGCTCGTGCGCTGACGGCA+AGG	0.543327	tig0006800:+7804	None:intergenic
AAGGACATCGATCATCCAAT+GGG	0.489534	tig0006800:-7407	Msa1344160:three_prime_UTR
AAGTAAGGGATGCATGTTAC+AGG	0.318032	tig0006800:-5500	Msa1344160:three_prime_UTR
AATAGGCTTTGAGAAATGGA+GGG	0.681330	tig0006800:+5556	None:intergenic
AATTACGGGGAGTATTATCT+GGG	0.583825	tig0006800:-5805	Msa1344160:three_prime_UTR
ACAGCCATCGTGCTATGCAG+TGG	0.621490	tig0006800:+7845	None:intergenic
ACGAAGGGAAGACCTGGCCG+TGG	0.538799	tig0006800:+8103	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTCCTATACACATAACAA+TGG	-	tig0006800:5596-5615	Msa1344160:three_prime_UTR	30.0%
TCTAGAAATCCTTAGATTGT+AGG	-	tig0006800:6180-6199	Msa1344160:intron	30.0%
CTAATTGTACCTACAATCTA+AGG	+	tig0006800:6192-6211	None:intergenic	30.0%
TTTATAGGGAATGGAAAAGA+TGG	-	tig0006800:6319-6338	Msa1344160:intron	30.0%
TTATAGGGAATGGAAAAGAT+GGG	-	tig0006800:6320-6339	Msa1344160:intron	30.0%
CTGACAGTTTAATAGAGTAA+GGG	-	tig0006800:6723-6742	Msa1344160:intron	30.0%
TGACAGTTTAATAGAGTAAG+GGG	-	tig0006800:6724-6743	Msa1344160:intron	30.0%
ATCATTAGGGATACAATCTT+AGG	+	tig0006800:6995-7014	None:intergenic	30.0%
TAGCAATGCCAAAATCATTA+GGG	+	tig0006800:7008-7027	None:intergenic	30.0%
TGACAATAGCATTTCAAGAA+AGG	+	tig0006800:7082-7101	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0006800	gene	5475	8305	5475	ID=Msa1344160;Name=Msa1344160
tig0006800	mRNA	5475	8305	5475	ID=Msa1344160-mRNA-1;Parent=Msa1344160;Name=Msa1344160-mRNA-1;_AED=0.16;_eAED=0.16;_QI=140\|1\|1\|1\|0.33\|0.25\|4\|493\|103
tig0006800	exon	5475	5884	5475	ID=Msa1344160-mRNA-1:exon:4403;Parent=Msa1344160-mRNA-1
tig0006800	exon	7382	7454	7382	ID=Msa1344160-mRNA-1:exon:4402;Parent=Msa1344160-mRNA-1
tig0006800	exon	7744	7904	7744	ID=Msa1344160-mRNA-1:exon:4401;Parent=Msa1344160-mRNA-1
tig0006800	exon	8005	8305	8005	ID=Msa1344160-mRNA-1:exon:4400;Parent=Msa1344160-mRNA-1
tig0006800	five_prime_UTR	8166	8305	8166	ID=Msa1344160-mRNA-1:five_prime_utr;Parent=Msa1344160-mRNA-1
tig0006800	CDS	8005	8165	8005	ID=Msa1344160-mRNA-1:cds;Parent=Msa1344160-mRNA-1
tig0006800	CDS	7754	7904	7754	ID=Msa1344160-mRNA-1:cds;Parent=Msa1344160-mRNA-1
tig0006800	three_prime_UTR	7744	7753	7744	ID=Msa1344160-mRNA-1:three_prime_utr;Parent=Msa1344160-mRNA-1
tig0006800	three_prime_UTR	7382	7454	7382	ID=Msa1344160-mRNA-1:three_prime_utr;Parent=Msa1344160-mRNA-1
tig0006800	three_prime_UTR	5475	5884	5475	ID=Msa1344160-mRNA-1:three_prime_utr;Parent=Msa1344160-mRNA-1

Gene Sequence	>Msa1344160 ATGGCGTTGCGATCTGGATCTCTATCTCGCTCCTTCATCTCCACGGCCAGGTCTTCCCTTCGTCCGGCGGCTCCTTCTTCCCTTCCTCGCCTCCGTCCTCCGCCACTCGCCACCCCTCGCACTCAGCCCCGCCTCTTTTCCATGCCTGCTACCTCTTCCAGGAATTTGGGGCAATTGGGTTGCGTACAATCACTTTTGCCACTGCATAGCACGATGGCTGTAGCGTGTTTCACATCTCACCTTGCCGTCAGCGCACGAGCTTGTAGCGAGCTGTCCAATGGTACCTTCCGTCGTTCTTGTCAAGATCGCTAA
Protein sequence	>Msa1344160 MALRSGSLSRSFISTARSSLRPAAPSSLPRLRPPPLATPRTQPRLFSMPATSSRNLGQLGCVQSLLPLHSTMAVACFTSHLAVSARACSELSNGTFRRSCQDR*