Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344160 | XP_013470020.1 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 1.20e-60 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344160 | A0A072VRJ2 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 5.74e-61 | 190 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002430 | Msa1344160 | 0.832167 | 1.103013e-55 | -8.615850e-47 |
| Msa0602900 | Msa1344160 | 0.804158 | 2.470335e-49 | -8.615850e-47 |
| Msa0643960 | Msa1344160 | 0.806425 | 8.276930e-50 | -8.615850e-47 |
| Msa0648670 | Msa1344160 | 0.810262 | 1.258269e-50 | -8.615850e-47 |
| Msa0694400 | Msa1344160 | 0.830341 | 3.101392e-55 | -8.615850e-47 |
| Msa0796490 | Msa1344160 | 0.804908 | 1.723733e-49 | -8.615850e-47 |
| Msa0136400 | Msa1344160 | 0.994960 | 9.860808e-212 | -8.615850e-47 |
| Msa0167860 | Msa1344160 | 0.837138 | 6.201767e-57 | -8.615850e-47 |
| Msa0192490 | Msa1344160 | 0.800323 | 1.520931e-48 | -8.615850e-47 |
| Msa0223240 | Msa1344160 | 0.801175 | 1.019443e-48 | -8.615850e-47 |
| Msa1235950 | Msa1344160 | 0.837889 | 3.981963e-57 | -8.615850e-47 |
| Msa1235980 | Msa1344160 | 0.832434 | 9.472923e-56 | -8.615850e-47 |
| Msa1257450 | Msa1344160 | 0.836700 | 8.023207e-57 | -8.615850e-47 |
| Msa1299690 | Msa1344160 | 0.815672 | 8.198753e-52 | -8.615850e-47 |
| Msa1305260 | Msa1344160 | 0.830278 | 3.213239e-55 | -8.615850e-47 |
| Msa1316100 | Msa1344160 | 0.802050 | 6.742973e-49 | -8.615850e-47 |
| Msa1332230 | Msa1344160 | 0.851893 | 6.596150e-61 | -8.615850e-47 |
| Msa1341780 | Msa1344160 | 0.818512 | 1.885630e-52 | -8.615850e-47 |
| Msa1344160 | Msa1344190 | 0.978573 | 4.147998e-146 | -8.615850e-47 |
| Msa1344160 | Msa1385480 | 0.842774 | 2.105145e-58 | -8.615850e-47 |
| Msa1344160 | Msa1433590 | 0.830796 | 2.400378e-55 | -8.615850e-47 |
| Msa1344160 | Msa1465700 | 0.826973 | 2.021355e-54 | -8.615850e-47 |
| Msa0383690 | Msa1344160 | 0.858423 | 8.320741e-63 | -8.615850e-47 |
| Msa1093500 | Msa1344160 | 0.818471 | 1.926982e-52 | -8.615850e-47 |
| Msa0315430 | Msa1344160 | 0.801336 | 9.448642e-49 | -8.615850e-47 |
| Msa0337750 | Msa1344160 | 0.814787 | 1.289689e-51 | -8.615850e-47 |
| Msa1116940 | Msa1344160 | 0.800906 | 1.156849e-48 | -8.615850e-47 |
| Msa1136880 | Msa1344160 | 0.815689 | 8.130172e-52 | -8.615850e-47 |
| Msa1207200 | Msa1344160 | 0.813631 | 2.321710e-51 | -8.615850e-47 |
| Msa1211820 | Msa1344160 | 0.825413 | 4.752273e-54 | -8.615850e-47 |
| Msa0547920 | Msa1344160 | 0.808628 | 2.820863e-50 | -8.615850e-47 |
| Msa0550490 | Msa1344160 | 0.815610 | 8.462428e-52 | -8.615850e-47 |
| Msa0554210 | Msa1344160 | 0.822397 | 2.421738e-53 | -8.615850e-47 |
| Msa0877540 | Msa1344160 | 0.821304 | 4.334428e-53 | -8.615850e-47 |
| Msa0929700 | Msa1344160 | 0.802181 | 6.337411e-49 | -8.615850e-47 |
| Msa0930890 | Msa1344160 | 0.831582 | 1.538686e-55 | -8.615850e-47 |
| Msa0943180 | Msa1344160 | 0.820598 | 6.303117e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344160 | MtrunA17_Chr1g0207701 | 92.784 | 97 | 7 | 0 | 1 | 97 | 1 | 97 | 8.07e-48 | 147 |
| Msa1344160 | MtrunA17_Chr5g0401651 | 49.495 | 99 | 37 | 4 | 1 | 95 | 1 | 90 | 4.80e-14 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344160 | AT2G15000.5 | 55.238 | 105 | 41 | 4 | 1 | 103 | 1 | 101 | 3.58e-24 | 88.6 |
| Msa1344160 | AT2G15000.7 | 55.238 | 105 | 41 | 4 | 1 | 103 | 1 | 101 | 3.58e-24 | 88.6 |
| Msa1344160 | AT2G15000.4 | 55.238 | 105 | 41 | 4 | 1 | 103 | 1 | 101 | 3.58e-24 | 88.6 |
| Msa1344160 | AT2G15000.6 | 55.238 | 105 | 41 | 4 | 1 | 103 | 1 | 101 | 3.58e-24 | 88.6 |
| Msa1344160 | AT2G15000.1 | 53.608 | 97 | 39 | 4 | 1 | 95 | 1 | 93 | 3.93e-18 | 72.8 |
| Msa1344160 | AT4G34265.5 | 46.491 | 114 | 34 | 5 | 1 | 103 | 1 | 98 | 1.07e-17 | 72.0 |
| Msa1344160 | AT4G34265.4 | 46.491 | 114 | 34 | 5 | 1 | 103 | 1 | 98 | 1.07e-17 | 72.0 |
| Msa1344160 | AT4G34265.3 | 46.491 | 114 | 34 | 5 | 1 | 103 | 1 | 98 | 1.07e-17 | 72.0 |
| Msa1344160 | AT2G15000.3 | 53.125 | 96 | 39 | 4 | 1 | 94 | 1 | 92 | 1.82e-17 | 71.2 |
| Msa1344160 | AT2G15000.2 | 53.125 | 96 | 39 | 4 | 1 | 94 | 1 | 92 | 1.82e-17 | 71.2 |
| Msa1344160 | AT4G34265.2 | 44.340 | 106 | 32 | 5 | 1 | 95 | 1 | 90 | 9.76e-13 | 59.3 |
| Msa1344160 | AT4G34265.1 | 43.396 | 106 | 33 | 5 | 1 | 95 | 1 | 90 | 4.07e-12 | 57.8 |
| Msa1344160 | AT4G34265.6 | 43.396 | 106 | 33 | 5 | 1 | 95 | 1 | 90 | 4.07e-12 | 57.8 |
Find 75 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGTGTTTCTTTCAGTATC+TGG | 0.204771 | tig0006800:-5626 | Msa1344160:three_prime_UTR |
| CCATGCCTGCTACCTCTTCC+AGG | 0.234541 | tig0006800:-8004 | Msa1344160:intron |
| GTGCAGGAATTTGGGGCAAT+TGG | 0.247985 | tig0006800:-7888 | Msa1344160:intron |
| TTATTAATTCTTATTGTATC+TGG | 0.252121 | tig0006800:-5673 | Msa1344160:three_prime_UTR |
| ATAATACTCCCCGTAATTAT+TGG | 0.253421 | tig0006800:+5810 | None:intergenic |
| TAATTACGGGGAGTATTATC+TGG | 0.297004 | tig0006800:-5806 | Msa1344160:three_prime_UTR |
| AAGTAAGGGATGCATGTTAC+AGG | 0.318032 | tig0006800:-5500 | Msa1344160:three_prime_UTR |
| TCGTGTTTCTTTCAGTATCT+GGG | 0.377668 | tig0006800:-5625 | Msa1344160:three_prime_UTR |
| TGCAGGAATTTGGGGCAATT+GGG | 0.381549 | tig0006800:-7887 | Msa1344160:intron |
| ATATAGAGTGCCAATAATTA+CGG | 0.385464 | tig0006800:-5820 | Msa1344160:three_prime_UTR |
| CGGAGGCGAGGAAGGGAAGA+AGG | 0.397485 | tig0006800:+8071 | None:intergenic |
| ATAACAATGGCGTTGCGATC+TGG | 0.400559 | tig0006800:-8149 | Msa1344160:exon |
| TGGCGAGTGGCGGAGGACGG+AGG | 0.410736 | tig0006800:+8054 | None:intergenic |
| ATCGAGAGTGGAAACTAGAT+TGG | 0.413608 | tig0006800:+8237 | None:intergenic |
| GAGAAATGGAGGGTACCATT+TGG | 0.417341 | tig0006800:+5566 | None:intergenic |
| CGAGGGGTGGCGAGTGGCGG+AGG | 0.419804 | tig0006800:+8047 | None:intergenic |
| TTTATAGGGAATGGAAAAGA+TGG | 0.419851 | tig0006800:-7439 | Msa1344160:intron |
| ATGGAATAGGCTTTGAGAAA+TGG | 0.436563 | tig0006800:+5552 | None:intergenic |
| GCGGAGGACGGAGGCGAGGA+AGG | 0.437115 | tig0006800:+8063 | None:intergenic |
| TATAGAGTGCCAATAATTAC+GGG | 0.445156 | tig0006800:-5819 | Msa1344160:three_prime_UTR |
| AGAAGGAGCCGCCGGACGAA+GGG | 0.456281 | tig0006800:+8088 | None:intergenic |
| TATTGTTGTTAGTCATGAGT+TGG | 0.469273 | tig0006800:-5592 | Msa1344160:three_prime_UTR |
| ATTGTTGTTAGTCATGAGTT+GGG | 0.471035 | tig0006800:-5591 | Msa1344160:three_prime_UTR |
| AAGAGGCGGGGCTGAGTGCG+AGG | 0.481512 | tig0006800:+8029 | None:intergenic |
| GGCCAGGTCTTCCCTTCGTC+CGG | 0.483656 | tig0006800:-8099 | Msa1344160:CDS |
| AGCAGGCATGGAAAAGAGGC+GGG | 0.485396 | tig0006800:+8016 | None:intergenic |
| AAGGACATCGATCATCCAAT+GGG | 0.489534 | tig0006800:-7407 | Msa1344160:three_prime_UTR |
| AGACCTGGCCGTGGAGATGA+AGG | 0.492112 | tig0006800:+8112 | None:intergenic |
| AACGCCATTGTTATGTGTAT+AGG | 0.495844 | tig0006800:+8158 | None:intergenic |
| GAATAGGCTTTGAGAAATGG+AGG | 0.497614 | tig0006800:+5555 | None:intergenic |
| GCTCCTTCATCTCCACGGCC+AGG | 0.498839 | tig0006800:-8115 | Msa1344160:CDS |
| CGGAGGACGGAGGCGAGGAA+GGG | 0.500771 | tig0006800:+8064 | None:intergenic |
| GTGCGAGGGGTGGCGAGTGG+CGG | 0.502077 | tig0006800:+8044 | None:intergenic |
| CAGTTACTTGAGCAAGCTGT+TGG | 0.507883 | tig0006800:-5865 | Msa1344160:three_prime_UTR |
| CAGCATTCGTCTCTCCCCAT+TGG | 0.512363 | tig0006800:+7392 | None:intergenic |
| CCTGGAAGAGGTAGCAGGCA+TGG | 0.513058 | tig0006800:+8004 | None:intergenic |
| CGCCGGACGAAGGGAAGACC+TGG | 0.513153 | tig0006800:+8097 | None:intergenic |
| GGGTGGCGAGTGGCGGAGGA+CGG | 0.517554 | tig0006800:+8051 | None:intergenic |
| TTAGGGTTTGGACCTGGAAG+AGG | 0.524458 | tig0006800:+7992 | None:intergenic |
| TTGGACCTGGAAGAGGTAGC+AGG | 0.529380 | tig0006800:+7999 | None:intergenic |
| AGGTAGCAGGCATGGAAAAG+AGG | 0.531493 | tig0006800:+8012 | None:intergenic |
| AGTGGCGGAGGACGGAGGCG+AGG | 0.533816 | tig0006800:+8059 | None:intergenic |
| ACGAAGGGAAGACCTGGCCG+TGG | 0.538799 | tig0006800:+8103 | None:intergenic |
| AGAGGCGGGGCTGAGTGCGA+GGG | 0.539518 | tig0006800:+8030 | None:intergenic |
| AAGAAGGAGCCGCCGGACGA+AGG | 0.539975 | tig0006800:+8087 | None:intergenic |
| ATCTCGCTCCTTCATCTCCA+CGG | 0.540316 | tig0006800:-8120 | Msa1344160:CDS |
| GAGTATTATCTGGGAAGTAA+TGG | 0.542717 | tig0006800:-5796 | Msa1344160:three_prime_UTR |
| AAGCTCGTGCGCTGACGGCA+AGG | 0.543327 | tig0006800:+7804 | None:intergenic |
| CGTCGTTCGATGAGAATTCG+AGG | 0.543913 | tig0006800:-8265 | Msa1344160:five_prime_UTR |
| GAGGCGGGGCTGAGTGCGAG+GGG | 0.547076 | tig0006800:+8031 | None:intergenic |
| GGAAGGGAAGAAGGAGCCGC+CGG | 0.548993 | tig0006800:+8080 | None:intergenic |
| GCGGGGCTGAGTGCGAGGGG+TGG | 0.550387 | tig0006800:+8034 | None:intergenic |
| TGAGTGCGAGGGGTGGCGAG+TGG | 0.550653 | tig0006800:+8041 | None:intergenic |
| TTATAGGGAATGGAAAAGAT+GGG | 0.555551 | tig0006800:-7438 | Msa1344160:intron |
| CAAGGACATCGATCATCCAA+TGG | 0.558518 | tig0006800:-7408 | Msa1344160:three_prime_UTR |
| GCTACAAGCTCGTGCGCTGA+CGG | 0.567501 | tig0006800:+7799 | None:intergenic |
| CGTGTTTCTTTCAGTATCTG+GGG | 0.571412 | tig0006800:-5624 | Msa1344160:three_prime_UTR |
| AGAACGACGGAAGGTACCAT+TGG | 0.577356 | tig0006800:+7769 | None:intergenic |
| TAGCAGGCATGGAAAAGAGG+CGG | 0.583179 | tig0006800:+8015 | None:intergenic |
| AATTACGGGGAGTATTATCT+GGG | 0.583825 | tig0006800:-5805 | Msa1344160:three_prime_UTR |
| TTTGTTGGTGCAGGAATTTG+GGG | 0.587970 | tig0006800:-7895 | Msa1344160:intron |
| GCTTGTAGCGAGCTGTCCAA+TGG | 0.595505 | tig0006800:-7785 | Msa1344160:CDS |
| GAAAAGATGGGTGATGCGCA+AGG | 0.615793 | tig0006800:-7426 | Msa1344160:three_prime_UTR |
| ACAGCCATCGTGCTATGCAG+TGG | 0.621490 | tig0006800:+7845 | None:intergenic |
| ATCTTGACAAGAACGACGGA+AGG | 0.626544 | tig0006800:+7760 | None:intergenic |
| CAGGTCTTCCCTTCGTCCGG+CGG | 0.627826 | tig0006800:-8096 | Msa1344160:CDS |
| GTCATGAGTTGGGATCCAAA+TGG | 0.640332 | tig0006800:-5581 | Msa1344160:three_prime_UTR |
| GCAGGCATGGAAAAGAGGCG+GGG | 0.645770 | tig0006800:+8017 | None:intergenic |
| TTTGCCACTGCATAGCACGA+TGG | 0.666045 | tig0006800:-7849 | Msa1344160:CDS |
| TTCTCCTATACACATAACAA+TGG | 0.666341 | tig0006800:-8162 | Msa1344160:exon |
| AATAGGCTTTGAGAAATGGA+GGG | 0.681330 | tig0006800:+5556 | None:intergenic |
| TAAGGGATGCATGTTACAGG+CGG | 0.682564 | tig0006800:-5497 | Msa1344160:three_prime_UTR |
| AGCGATCTTGACAAGAACGA+CGG | 0.707528 | tig0006800:+7756 | None:intergenic |
| ATAGAGTGCCAATAATTACG+GGG | 0.755091 | tig0006800:-5818 | Msa1344160:three_prime_UTR |
| AGGACATCGATCATCCAATG+GGG | 0.763566 | tig0006800:-7406 | Msa1344160:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTAAGATTTTAATTTAT+AGG | - | tig0006800:6304-6323 | Msa1344160:intron | 10.0% |
| !!! | TTTAAATTTTCATAATCTCA+AGG | + | tig0006800:6571-6590 | None:intergenic | 15.0% |
| !! | TAGTAAGTTGTTAAAATATA+TGG | - | tig0006800:6662-6681 | Msa1344160:intron | 15.0% |
| !! | AAAATAAAGAATTTGTAGTT+GGG | + | tig0006800:7414-7433 | None:intergenic | 15.0% |
| !! | TAAAAATACTTAGTATTACA+CGG | + | tig0006800:7855-7874 | None:intergenic | 15.0% |
| !! | TTATTAATTCTTATTGTATC+TGG | - | tig0006800:8085-8104 | Msa1344160:CDS | 15.0% |
| !!! | AAGAGTTTTTTTTTTTTGTA+TGG | + | tig0006800:8232-8251 | None:intergenic | 15.0% |
| !!! | AAAACTCTTTATTTTAAGTA+AGG | - | tig0006800:8243-8262 | Msa1344160:five_prime_UTR | 15.0% |
| !!! | AAACTCTTTATTTTAAGTAA+GGG | - | tig0006800:8244-8263 | Msa1344160:five_prime_UTR | 15.0% |
| !!! | CAACATGATTAAAACATTTT+CGG | + | tig0006800:6066-6085 | None:intergenic | 20.0% |
| !!! | AAAAAACACATTTTTGTGAA+GGG | + | tig0006800:6112-6131 | None:intergenic | 20.0% |
| !!! | AAAAAAACACATTTTTGTGA+AGG | + | tig0006800:6113-6132 | None:intergenic | 20.0% |
| !!! | AGATTTTAATTTATAGGGAA+TGG | - | tig0006800:6310-6329 | Msa1344160:intron | 20.0% |
| !!! | ATTTTGACAAAGGAATAAAA+GGG | + | tig0006800:6409-6428 | None:intergenic | 20.0% |
| !!! | AATTTTGACAAAGGAATAAA+AGG | + | tig0006800:6410-6429 | None:intergenic | 20.0% |
| !!! | TGAATTCATAATTTTGACAA+AGG | + | tig0006800:6419-6438 | None:intergenic | 20.0% |
| !! | AACAGTAAGTGTTTAAATAT+CGG | - | tig0006800:6693-6712 | Msa1344160:intron | 20.0% |
| !! | AAGAATGAAAAATGAACATT+CGG | + | tig0006800:6836-6855 | None:intergenic | 20.0% |
| !! | TATTAGAATAACTGATGAAA+GGG | + | tig0006800:7276-7295 | None:intergenic | 20.0% |
| !! | TGTTTAACCATAATAACAAT+GGG | + | tig0006800:7364-7383 | None:intergenic | 20.0% |
| !! | ATGTTTAACCATAATAACAA+TGG | + | tig0006800:7365-7384 | None:intergenic | 20.0% |
| !! | CAAAATAAAGAATTTGTAGT+TGG | + | tig0006800:7415-7434 | None:intergenic | 20.0% |
| !!! | TTTGAAAAATGAGATTTTTG+TGG | - | tig0006800:7431-7450 | Msa1344160:three_prime_UTR | 20.0% |
| !! | AAAAACAGAAATTTCCAAAA+AGG | + | tig0006800:7702-7721 | None:intergenic | 20.0% |
| !! | AATATAAAAAACAGGTTCTT+TGG | + | tig0006800:8039-8058 | None:intergenic | 20.0% |
| !! | ACAGTTTGAATATAAAAAAC+AGG | + | tig0006800:8047-8066 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTTTTGTATGGA+TGG | + | tig0006800:8228-8247 | None:intergenic | 20.0% |
| !! | TCACAAAGAAAGAGTTTTTA+GGG | + | tig0006800:5576-5595 | None:intergenic | 25.0% |
| !! | ATCACAAAGAAAGAGTTTTT+AGG | + | tig0006800:5577-5596 | None:intergenic | 25.0% |
| !!! | TCTGAATGTGTTTTTTTTGT+TGG | - | tig0006800:5848-5867 | Msa1344160:three_prime_UTR | 25.0% |
| !! | AAAAACACATTTTTGTGAAG+GGG | + | tig0006800:6111-6130 | None:intergenic | 25.0% |
| !! | TTTCTAAGGAAAAATCTAAC+TGG | + | tig0006800:6512-6531 | None:intergenic | 25.0% |
| ! | ACAGTAAGTGTTTAAATATC+GGG | - | tig0006800:6694-6713 | Msa1344160:intron | 25.0% |
| ! | CAATAAAATACCACATACAA+TGG | + | tig0006800:6905-6924 | None:intergenic | 25.0% |
| !!! | TCTTAGGTTTTGATTCATTT+AGG | + | tig0006800:6979-6998 | None:intergenic | 25.0% |
| !!! | TTTTTCAACTAGAAGTATAG+AGG | - | tig0006800:7122-7141 | Msa1344160:intron | 25.0% |
| ! | GTATTAGAATAACTGATGAA+AGG | + | tig0006800:7277-7296 | None:intergenic | 25.0% |
| !! | CTAAATTCCCATTGTTATTA+TGG | - | tig0006800:7354-7373 | Msa1344160:intron | 25.0% |
| !! | ATATAGAGTGCCAATAATTA+CGG | - | tig0006800:7938-7957 | Msa1344160:intron | 25.0% |
| !!! | TTCTTATTGTATCTGGTTTT+TGG | - | tig0006800:8092-8111 | Msa1344160:CDS | 25.0% |
| !!! | TTTTTTTGTATGGATGGAAT+AGG | + | tig0006800:8222-8241 | None:intergenic | 25.0% |
| ! | TTCAGATTTTTAATCGAGAG+TGG | + | tig0006800:5536-5555 | None:intergenic | 30.0% |
| TTCTCCTATACACATAACAA+TGG | - | tig0006800:5596-5615 | Msa1344160:three_prime_UTR | 30.0% | |
| TCTAGAAATCCTTAGATTGT+AGG | - | tig0006800:6180-6199 | Msa1344160:intron | 30.0% | |
| CTAATTGTACCTACAATCTA+AGG | + | tig0006800:6192-6211 | None:intergenic | 30.0% | |
| TTTATAGGGAATGGAAAAGA+TGG | - | tig0006800:6319-6338 | Msa1344160:intron | 30.0% | |
| TTATAGGGAATGGAAAAGAT+GGG | - | tig0006800:6320-6339 | Msa1344160:intron | 30.0% | |
| ! | TCCTTCTTAAGAGTATGTTA+GGG | - | tig0006800:6629-6648 | Msa1344160:intron | 30.0% |
| CTGACAGTTTAATAGAGTAA+GGG | - | tig0006800:6723-6742 | Msa1344160:intron | 30.0% | |
| TGACAGTTTAATAGAGTAAG+GGG | - | tig0006800:6724-6743 | Msa1344160:intron | 30.0% | |
| !! | CAATCAATTTTGTTTCCCTT+GGG | - | tig0006800:6874-6893 | Msa1344160:intron | 30.0% |
| ! | GAAGATATTTTCTGAGTAAG+CGG | - | tig0006800:6933-6952 | Msa1344160:intron | 30.0% |
| !! | TTTTGATTCATTTAGGACTG+AGG | + | tig0006800:6972-6991 | None:intergenic | 30.0% |
| ATCATTAGGGATACAATCTT+AGG | + | tig0006800:6995-7014 | None:intergenic | 30.0% | |
| ! | GATTGTATCCCTAATGATTT+TGG | - | tig0006800:6997-7016 | Msa1344160:intron | 30.0% |
| TAGCAATGCCAAAATCATTA+GGG | + | tig0006800:7008-7027 | None:intergenic | 30.0% | |
| ! | GTGTAGAAACTTGATAACAT+GGG | + | tig0006800:7060-7079 | None:intergenic | 30.0% |
| TGACAATAGCATTTCAAGAA+AGG | + | tig0006800:7082-7101 | None:intergenic | 30.0% | |
| AAAGTGAACGAATTTATGCA+TGG | + | tig0006800:7201-7220 | None:intergenic | 30.0% | |
| CTGAAGATTTCAAATTGTCT+TGG | + | tig0006800:7491-7510 | None:intergenic | 30.0% | |
| ! | CAAGACAATTTGAAATCTTC+AGG | - | tig0006800:7489-7508 | Msa1344160:intron | 30.0% |
| !!! | AGTCTGTATTTTTAGTGTGA+AGG | - | tig0006800:7539-7558 | Msa1344160:intron | 30.0% |
| ! | AGGGTACTATTTATGAAAGT+GGG | - | tig0006800:7785-7804 | Msa1344160:CDS | 30.0% |
| ! | TATAGAGTGCCAATAATTAC+GGG | - | tig0006800:7939-7958 | Msa1344160:intron | 30.0% |
| ATAATACTCCCCGTAATTAT+TGG | + | tig0006800:7951-7970 | None:intergenic | 30.0% | |
| !!! | TCTGTTATGTTTTTTGACTC+CGG | - | tig0006800:8012-8031 | Msa1344160:CDS | 30.0% |
| ! | TATTGTTGTTAGTCATGAGT+TGG | - | tig0006800:8166-8185 | Msa1344160:five_prime_UTR | 30.0% |
| ! | ATTGTTGTTAGTCATGAGTT+GGG | - | tig0006800:8167-8186 | Msa1344160:five_prime_UTR | 30.0% |
| !!! | GAGTTTTTAGGGTTTTGTGA+GGG | + | tig0006800:5565-5584 | None:intergenic | 35.0% |
| !!! | AGAGTTTTTAGGGTTTTGTG+AGG | + | tig0006800:5566-5585 | None:intergenic | 35.0% |
| AACGCCATTGTTATGTGTAT+AGG | + | tig0006800:5603-5622 | None:intergenic | 35.0% | |
| TTGAATTGGGAATTAGGGTT+TGG | + | tig0006800:5781-5800 | None:intergenic | 35.0% | |
| TGAGCTTGAATTGGGAATTA+GGG | + | tig0006800:5786-5805 | None:intergenic | 35.0% | |
| TTGAGCTTGAATTGGGAATT+AGG | + | tig0006800:5787-5806 | None:intergenic | 35.0% | |
| ATTGTCGTTGAGCTTGAATT+GGG | + | tig0006800:5794-5813 | None:intergenic | 35.0% | |
| !!! | TGTGTTTTTTTTGTTGGTGC+AGG | - | tig0006800:5854-5873 | Msa1344160:three_prime_UTR | 35.0% |
| ! | TTTTTGTTGGTGCAGGAATT+TGG | - | tig0006800:5861-5880 | Msa1344160:three_prime_UTR | 35.0% |
| ! | TTTTGTTGGTGCAGGAATTT+GGG | - | tig0006800:5862-5881 | Msa1344160:three_prime_UTR | 35.0% |
| AAGGGGTCTGAAAATCATTA+TGG | + | tig0006800:6094-6113 | None:intergenic | 35.0% | |
| ! | TTTTGCTTCATGTGAAGAGA+TGG | - | tig0006800:6235-6254 | Msa1344160:intron | 35.0% |
| ! | TTCATGTGAAGAGATGGATT+GGG | - | tig0006800:6241-6260 | Msa1344160:intron | 35.0% |
| !! | GAATGCTGCTTTCTATTTGT+AGG | - | tig0006800:6381-6400 | Msa1344160:intron | 35.0% |
| CATCTCTAACAATCATCAAC+CGG | + | tig0006800:6479-6498 | None:intergenic | 35.0% | |
| GATGATTGTTAGAGATGATC+TGG | - | tig0006800:6482-6501 | Msa1344160:intron | 35.0% | |
| ! | GTCCTTCTTAAGAGTATGTT+AGG | - | tig0006800:6628-6647 | Msa1344160:intron | 35.0% |
| TCCCTAACATACTCTTAAGA+AGG | + | tig0006800:6633-6652 | None:intergenic | 35.0% | |
| ACTCTATTAAACTGTCAGGT+TGG | + | tig0006800:6721-6740 | None:intergenic | 35.0% | |
| CCTTACTCTATTAAACTGTC+AGG | + | tig0006800:6725-6744 | None:intergenic | 35.0% | |
| CCTGACAGTTTAATAGAGTA+AGG | - | tig0006800:6722-6741 | Msa1344160:intron | 35.0% | |
| AAATTAACCCTCGACTTTGT+AGG | + | tig0006800:6792-6811 | None:intergenic | 35.0% | |
| TACAAAGTCGAGGGTTAATT+TGG | - | tig0006800:6791-6810 | Msa1344160:intron | 35.0% | |
| !! | GAACATTCGGTTTTGATGTT+TGG | + | tig0006800:6823-6842 | None:intergenic | 35.0% |
| !! | GCAATCAATTTTGTTTCCCT+TGG | - | tig0006800:6873-6892 | Msa1344160:intron | 35.0% |
| CTAGCAATGCCAAAATCATT+AGG | + | tig0006800:7009-7028 | None:intergenic | 35.0% | |
| !! | CTAATGATTTTGGCATTGCT+AGG | - | tig0006800:7007-7026 | Msa1344160:intron | 35.0% |
| ! | GGTGTAGAAACTTGATAACA+TGG | + | tig0006800:7061-7080 | None:intergenic | 35.0% |
| ! | CCATCTACATGACATTTTGA+GGG | + | tig0006800:7151-7170 | None:intergenic | 35.0% |
| CCTCAAAATGTCATGTAGAT+GGG | - | tig0006800:7149-7168 | Msa1344160:intron | 35.0% | |
| AATTTGTAGTTGGGTCAAAG+AGG | + | tig0006800:7405-7424 | None:intergenic | 35.0% | |
| AATCTTCAGGAAGTTTGTCA+TGG | - | tig0006800:7502-7521 | Msa1344160:intron | 35.0% | |
| AGGACTGCTTACTATACTTA+AGG | - | tig0006800:7641-7660 | Msa1344160:intron | 35.0% | |
| ! | CTTAAGGTCTTTGTTTGAAG+TGG | - | tig0006800:7657-7676 | Msa1344160:intron | 35.0% |
| ! | GTGTTATGACAACTCCTTTT+TGG | - | tig0006800:7685-7704 | Msa1344160:intron | 35.0% |
| !! | GAGGGTACTATTTATGAAAG+TGG | - | tig0006800:7784-7803 | Msa1344160:CDS | 35.0% |
| ! | ATAGAGTGCCAATAATTACG+GGG | - | tig0006800:7940-7959 | Msa1344160:intron | 35.0% |
| !! | TAATTACGGGGAGTATTATC+TGG | - | tig0006800:7952-7971 | Msa1344160:intron | 35.0% |
| !! | AATTACGGGGAGTATTATCT+GGG | - | tig0006800:7953-7972 | Msa1344160:intron | 35.0% |
| GAGTATTATCTGGGAAGTAA+TGG | - | tig0006800:7962-7981 | Msa1344160:intron | 35.0% | |
| AAAAAACAGGTTCTTTGGTC+CGG | + | tig0006800:8034-8053 | None:intergenic | 35.0% | |
| ATCGTGTTTCTTTCAGTATC+TGG | - | tig0006800:8132-8151 | Msa1344160:CDS | 35.0% | |
| TCGTGTTTCTTTCAGTATCT+GGG | - | tig0006800:8133-8152 | Msa1344160:CDS | 35.0% | |
| !! | AATAGGCTTTGAGAAATGGA+GGG | + | tig0006800:8205-8224 | None:intergenic | 35.0% |
| !! | ATGGAATAGGCTTTGAGAAA+TGG | + | tig0006800:8209-8228 | None:intergenic | 35.0% |
| ATCGAGAGTGGAAACTAGAT+TGG | + | tig0006800:5524-5543 | None:intergenic | 40.0% | |
| CATTGTCGTTGAGCTTGAAT+TGG | + | tig0006800:5795-5814 | None:intergenic | 40.0% | |
| TTTGTTGGTGCAGGAATTTG+GGG | - | tig0006800:5863-5882 | Msa1344160:three_prime_UTR | 40.0% | |
| ! | GTGAGTCTTGTCTGTTCTAT+AGG | - | tig0006800:6037-6056 | Msa1344160:intron | 40.0% |
| CTTCATGTGAAGAGATGGAT+TGG | - | tig0006800:6240-6259 | Msa1344160:intron | 40.0% | |
| ! | TTTGTGAGTCTGTCTAGCTT+TGG | - | tig0006800:6270-6289 | Msa1344160:intron | 40.0% |
| AAGGACATCGATCATCCAAT+GGG | - | tig0006800:6351-6370 | Msa1344160:intron | 40.0% | |
| GATTGTTAGAGATGATCTGG+AGG | - | tig0006800:6485-6504 | Msa1344160:intron | 40.0% | |
| CGGTCAAGGATGAATTTCTA+AGG | + | tig0006800:6526-6545 | None:intergenic | 40.0% | |
| CATACAATGGAAATGCCCAA+GGG | + | tig0006800:6892-6911 | None:intergenic | 40.0% | |
| ACATACAATGGAAATGCCCA+AGG | + | tig0006800:6893-6912 | None:intergenic | 40.0% | |
| TTGGGCATTTCCATTGTATG+TGG | - | tig0006800:6892-6911 | Msa1344160:intron | 40.0% | |
| CCCTCAAAATGTCATGTAGA+TGG | - | tig0006800:7148-7167 | Msa1344160:intron | 40.0% | |
| ! | CCCATCTACATGACATTTTG+AGG | + | tig0006800:7152-7171 | None:intergenic | 40.0% |
| TCATGTAGATGGGAAACTCT+TGG | - | tig0006800:7159-7178 | Msa1344160:intron | 40.0% | |
| CTGGAAAAACAGCCATTTCA+AGG | + | tig0006800:7253-7272 | None:intergenic | 40.0% | |
| AGAATAACTGATGAAAGGGC+TGG | + | tig0006800:7272-7291 | None:intergenic | 40.0% | |
| GTAAACTCCATTCCTTTCAC+AGG | - | tig0006800:7306-7325 | Msa1344160:intron | 40.0% | |
| ! | GGAATTTAGAACATCACCTC+AGG | + | tig0006800:7343-7362 | None:intergenic | 40.0% |
| ! | AGCAAGCTGTTGGATTTTCA+TGG | - | tig0006800:7903-7922 | Msa1344160:intron | 40.0% |
| CGTGTTTCTTTCAGTATCTG+GGG | - | tig0006800:8134-8153 | Msa1344160:CDS | 40.0% | |
| !! | GAATAGGCTTTGAGAAATGG+AGG | + | tig0006800:8206-8225 | None:intergenic | 40.0% |
| AAGTAAGGGATGCATGTTAC+AGG | - | tig0006800:8258-8277 | Msa1344160:five_prime_UTR | 40.0% | |
| ATAACAATGGCGTTGCGATC+TGG | - | tig0006800:5609-5628 | Msa1344160:three_prime_UTR | 45.0% | |
| ! | TGCAGGAATTTGGGGCAATT+GGG | - | tig0006800:5871-5890 | Msa1344160:intron | 45.0% |
| ATCTTGACAAGAACGACGGA+AGG | + | tig0006800:6001-6020 | None:intergenic | 45.0% | |
| AGCGATCTTGACAAGAACGA+CGG | + | tig0006800:6005-6024 | None:intergenic | 45.0% | |
| CAAGGACATCGATCATCCAA+TGG | - | tig0006800:6350-6369 | Msa1344160:intron | 45.0% | |
| AGGACATCGATCATCCAATG+GGG | - | tig0006800:6352-6371 | Msa1344160:intron | 45.0% | |
| AAATTCATCCTTGACCGTGC+AGG | - | tig0006800:6529-6548 | Msa1344160:intron | 45.0% | |
| AATTCATCCTTGACCGTGCA+GGG | - | tig0006800:6530-6549 | Msa1344160:intron | 45.0% | |
| TTTCAAGGACGACACTTGCA+GGG | + | tig0006800:7238-7257 | None:intergenic | 45.0% | |
| ATTTCAAGGACGACACTTGC+AGG | + | tig0006800:7239-7258 | None:intergenic | 45.0% | |
| ! | TGCAAGTGTCGTCCTTGAAA+TGG | - | tig0006800:7238-7257 | Msa1344160:intron | 45.0% |
| AGGATCACCTGTGAAAGGAA+TGG | + | tig0006800:7316-7335 | None:intergenic | 45.0% | |
| GAATCAGGATCACCTGTGAA+AGG | + | tig0006800:7321-7340 | None:intergenic | 45.0% | |
| AGAACATCACCTCAGGAATC+AGG | + | tig0006800:7336-7355 | None:intergenic | 45.0% | |
| ! | AGGTCTTTGTTTGAAGTGGC+TGG | - | tig0006800:7661-7680 | Msa1344160:intron | 45.0% |
| AAGTGGGATGATCTGATGAC+AGG | - | tig0006800:7801-7820 | Msa1344160:CDS | 45.0% | |
| CAGTTACTTGAGCAAGCTGT+TGG | - | tig0006800:7893-7912 | Msa1344160:intron | 45.0% | |
| ! | GTCATGAGTTGGGATCCAAA+TGG | - | tig0006800:8177-8196 | Msa1344160:five_prime_UTR | 45.0% |
| !! | GAGAAATGGAGGGTACCATT+TGG | + | tig0006800:8195-8214 | None:intergenic | 45.0% |
| TAAGGGATGCATGTTACAGG+CGG | - | tig0006800:8261-8280 | Msa1344160:five_prime_UTR | 45.0% | |
| !!! | TATTAAGATTTTAATTTATA+GGG | - | tig0006800:6305-6324 | Msa1344160:intron | 5.0% |
| !! | ATAAAAATAAAATTTATATC+AGG | - | tig0006800:7621-7640 | Msa1344160:intron | 5.0% |
| !!! | GTTTTTTTTTTTTTTTTTTA+TGG | - | tig0006800:7716-7735 | Msa1344160:intron | 5.0% |
| CGTCGTTCGATGAGAATTCG+AGG | - | tig0006800:5493-5512 | Msa1344160:three_prime_UTR | 50.0% | |
| ATCTCGCTCCTTCATCTCCA+CGG | - | tig0006800:5638-5657 | Msa1344160:three_prime_UTR | 50.0% | |
| TAGCAGGCATGGAAAAGAGG+CGG | + | tig0006800:5746-5765 | None:intergenic | 50.0% | |
| AGGTAGCAGGCATGGAAAAG+AGG | + | tig0006800:5749-5768 | None:intergenic | 50.0% | |
| TTAGGGTTTGGACCTGGAAG+AGG | + | tig0006800:5769-5788 | None:intergenic | 50.0% | |
| TGGGAATTAGGGTTTGGACC+TGG | + | tig0006800:5775-5794 | None:intergenic | 50.0% | |
| ! | GTGCAGGAATTTGGGGCAAT+TGG | - | tig0006800:5870-5889 | Msa1344160:intron | 50.0% |
| TTTGCCACTGCATAGCACGA+TGG | - | tig0006800:5909-5928 | Msa1344160:intron | 50.0% | |
| !! | AGAACGACGGAAGGTACCAT+TGG | + | tig0006800:5992-6011 | None:intergenic | 50.0% |
| GAAAAGATGGGTGATGCGCA+AGG | - | tig0006800:6332-6351 | Msa1344160:intron | 50.0% | |
| ACAGGTGATCCTGATTCCTG+AGG | - | tig0006800:7324-7343 | Msa1344160:intron | 50.0% | |
| AGCAGGCATGGAAAAGAGGC+GGG | + | tig0006800:5745-5764 | None:intergenic | 55.0% | |
| TTGGACCTGGAAGAGGTAGC+AGG | + | tig0006800:5762-5781 | None:intergenic | 55.0% | |
| ACAGCCATCGTGCTATGCAG+TGG | + | tig0006800:5916-5935 | None:intergenic | 55.0% | |
| GCTTGTAGCGAGCTGTCCAA+TGG | - | tig0006800:5973-5992 | Msa1344160:intron | 55.0% | |
| CAGCATTCGTCTCTCCCCAT+TGG | + | tig0006800:6369-6388 | None:intergenic | 55.0% | |
| TGTGCGTGTGAGTGAGTGAC+CGG | - | tig0006800:6457-6476 | Msa1344160:intron | 55.0% | |
| !! | CAATTTGAGAGCGCCCTGCA+CGG | + | tig0006800:6546-6565 | None:intergenic | 55.0% |
| !! | TGAGAGCGCCTACAAAGTCG+AGG | - | tig0006800:6781-6800 | Msa1344160:intron | 55.0% |
| !! | GAGAGCGCCTACAAAGTCGA+GGG | - | tig0006800:6782-6801 | Msa1344160:intron | 55.0% |
| ATGCATGCTCGTGAGTCGTG+AGG | - | tig0006800:7765-7784 | Msa1344160:CDS | 55.0% | |
| TGCATGCTCGTGAGTCGTGA+GGG | - | tig0006800:7766-7785 | Msa1344160:CDS | 55.0% | |
| AGACCTGGCCGTGGAGATGA+AGG | + | tig0006800:5649-5668 | None:intergenic | 60.0% | |
| GCAGGCATGGAAAAGAGGCG+GGG | + | tig0006800:5744-5763 | None:intergenic | 60.0% | |
| CCTGGAAGAGGTAGCAGGCA+TGG | + | tig0006800:5757-5776 | None:intergenic | 60.0% | |
| CCATGCCTGCTACCTCTTCC+AGG | - | tig0006800:5754-5773 | Msa1344160:three_prime_UTR | 60.0% | |
| GCTACAAGCTCGTGCGCTGA+CGG | + | tig0006800:5962-5981 | None:intergenic | 60.0% | |
| ! | CGTGCAGGGCGCTCTCAAAT+TGG | - | tig0006800:6544-6563 | Msa1344160:intron | 60.0% |
| GCTCCTTCATCTCCACGGCC+AGG | - | tig0006800:5643-5662 | Msa1344160:three_prime_UTR | 65.0% | |
| ACGAAGGGAAGACCTGGCCG+TGG | + | tig0006800:5658-5677 | None:intergenic | 65.0% | |
| GGCCAGGTCTTCCCTTCGTC+CGG | - | tig0006800:5659-5678 | Msa1344160:three_prime_UTR | 65.0% | |
| CAGGTCTTCCCTTCGTCCGG+CGG | - | tig0006800:5662-5681 | Msa1344160:three_prime_UTR | 65.0% | |
| AGAAGGAGCCGCCGGACGAA+GGG | + | tig0006800:5673-5692 | None:intergenic | 65.0% | |
| AAGAAGGAGCCGCCGGACGA+AGG | + | tig0006800:5674-5693 | None:intergenic | 65.0% | |
| GGAAGGGAAGAAGGAGCCGC+CGG | + | tig0006800:5681-5700 | None:intergenic | 65.0% | |
| CGGAGGCGAGGAAGGGAAGA+AGG | + | tig0006800:5690-5709 | None:intergenic | 65.0% | |
| ! | AAGCTCGTGCGCTGACGGCA+AGG | + | tig0006800:5957-5976 | None:intergenic | 65.0% |
| CGCCGGACGAAGGGAAGACC+TGG | + | tig0006800:5664-5683 | None:intergenic | 70.0% | |
| CGGAGGACGGAGGCGAGGAA+GGG | + | tig0006800:5697-5716 | None:intergenic | 70.0% | |
| TGAGTGCGAGGGGTGGCGAG+TGG | + | tig0006800:5720-5739 | None:intergenic | 70.0% | |
| AGAGGCGGGGCTGAGTGCGA+GGG | + | tig0006800:5731-5750 | None:intergenic | 70.0% | |
| AAGAGGCGGGGCTGAGTGCG+AGG | + | tig0006800:5732-5751 | None:intergenic | 70.0% | |
| !! | GAGAGCGCCCTGCACGGTCA+AGG | + | tig0006800:6540-6559 | None:intergenic | 70.0% |
| GCGGAGGACGGAGGCGAGGA+AGG | + | tig0006800:5698-5717 | None:intergenic | 75.0% | |
| ! | AGTGGCGGAGGACGGAGGCG+AGG | + | tig0006800:5702-5721 | None:intergenic | 75.0% |
| ! | TGGCGAGTGGCGGAGGACGG+AGG | + | tig0006800:5707-5726 | None:intergenic | 75.0% |
| ! | GGGTGGCGAGTGGCGGAGGA+CGG | + | tig0006800:5710-5729 | None:intergenic | 75.0% |
| GTGCGAGGGGTGGCGAGTGG+CGG | + | tig0006800:5717-5736 | None:intergenic | 75.0% | |
| GAGGCGGGGCTGAGTGCGAG+GGG | + | tig0006800:5730-5749 | None:intergenic | 75.0% | |
| ! | CGAGGGGTGGCGAGTGGCGG+AGG | + | tig0006800:5714-5733 | None:intergenic | 80.0% |
| ! | GCGGGGCTGAGTGCGAGGGG+TGG | + | tig0006800:5727-5746 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006800 | gene | 5475 | 8305 | 5475 | ID=Msa1344160;Name=Msa1344160 |
| tig0006800 | mRNA | 5475 | 8305 | 5475 | ID=Msa1344160-mRNA-1;Parent=Msa1344160;Name=Msa1344160-mRNA-1;_AED=0.16;_eAED=0.16;_QI=140|1|1|1|0.33|0.25|4|493|103 |
| tig0006800 | exon | 5475 | 5884 | 5475 | ID=Msa1344160-mRNA-1:exon:4403;Parent=Msa1344160-mRNA-1 |
| tig0006800 | exon | 7382 | 7454 | 7382 | ID=Msa1344160-mRNA-1:exon:4402;Parent=Msa1344160-mRNA-1 |
| tig0006800 | exon | 7744 | 7904 | 7744 | ID=Msa1344160-mRNA-1:exon:4401;Parent=Msa1344160-mRNA-1 |
| tig0006800 | exon | 8005 | 8305 | 8005 | ID=Msa1344160-mRNA-1:exon:4400;Parent=Msa1344160-mRNA-1 |
| tig0006800 | five_prime_UTR | 8166 | 8305 | 8166 | ID=Msa1344160-mRNA-1:five_prime_utr;Parent=Msa1344160-mRNA-1 |
| tig0006800 | CDS | 8005 | 8165 | 8005 | ID=Msa1344160-mRNA-1:cds;Parent=Msa1344160-mRNA-1 |
| tig0006800 | CDS | 7754 | 7904 | 7754 | ID=Msa1344160-mRNA-1:cds;Parent=Msa1344160-mRNA-1 |
| tig0006800 | three_prime_UTR | 7744 | 7753 | 7744 | ID=Msa1344160-mRNA-1:three_prime_utr;Parent=Msa1344160-mRNA-1 |
| tig0006800 | three_prime_UTR | 7382 | 7454 | 7382 | ID=Msa1344160-mRNA-1:three_prime_utr;Parent=Msa1344160-mRNA-1 |
| tig0006800 | three_prime_UTR | 5475 | 5884 | 5475 | ID=Msa1344160-mRNA-1:three_prime_utr;Parent=Msa1344160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
