Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344190 | XP_013470020.1 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 1.20e-60 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344190 | A0A072VRJ2 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 5.74e-61 | 190 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002430 | Msa1344190 | 0.832545 | 8.892286e-56 | -8.615850e-47 |
| Msa0643960 | Msa1344190 | 0.802642 | 5.092655e-49 | -8.615850e-47 |
| Msa0648620 | Msa1344190 | 0.800143 | 1.654839e-48 | -8.615850e-47 |
| Msa0648670 | Msa1344190 | 0.810486 | 1.125617e-50 | -8.615850e-47 |
| Msa0694400 | Msa1344190 | 0.829457 | 5.093335e-55 | -8.615850e-47 |
| Msa0136400 | Msa1344190 | 0.978200 | 2.488700e-145 | -8.615850e-47 |
| Msa0167860 | Msa1344190 | 0.830962 | 2.185286e-55 | -8.615850e-47 |
| Msa1235950 | Msa1344190 | 0.835721 | 1.422553e-56 | -8.615850e-47 |
| Msa1235980 | Msa1344190 | 0.830531 | 2.786453e-55 | -8.615850e-47 |
| Msa1257450 | Msa1344190 | 0.840562 | 8.067084e-58 | -8.615850e-47 |
| Msa1299690 | Msa1344190 | 0.801845 | 7.430763e-49 | -8.615850e-47 |
| Msa1305260 | Msa1344190 | 0.824689 | 7.046024e-54 | -8.615850e-47 |
| Msa1316100 | Msa1344190 | 0.806544 | 7.814428e-50 | -8.615850e-47 |
| Msa1332230 | Msa1344190 | 0.844447 | 7.518011e-59 | -8.615850e-47 |
| Msa1341780 | Msa1344190 | 0.814656 | 1.378797e-51 | -8.615850e-47 |
| Msa1344160 | Msa1344190 | 0.978573 | 4.147998e-146 | -8.615850e-47 |
| Msa1344190 | Msa1385480 | 0.836873 | 7.251073e-57 | -8.615850e-47 |
| Msa1344190 | Msa1433590 | 0.815784 | 7.740433e-52 | -8.615850e-47 |
| Msa1344190 | Msa1465700 | 0.827771 | 1.301753e-54 | -8.615850e-47 |
| Msa0383690 | Msa1344190 | 0.846815 | 1.713451e-59 | -8.615850e-47 |
| Msa1093500 | Msa1344190 | 0.815754 | 7.861471e-52 | -8.615850e-47 |
| Msa0281370 | Msa1344190 | 0.800374 | 1.485430e-48 | -8.615850e-47 |
| Msa0315430 | Msa1344190 | 0.801227 | 9.943526e-49 | -8.615850e-47 |
| Msa0337750 | Msa1344190 | 0.817097 | 3.935492e-52 | -8.615850e-47 |
| Msa1116940 | Msa1344190 | 0.805516 | 1.285434e-49 | -8.615850e-47 |
| Msa1136880 | Msa1344190 | 0.811075 | 8.392173e-51 | -8.615850e-47 |
| Msa1207200 | Msa1344190 | 0.817021 | 4.092405e-52 | -8.615850e-47 |
| Msa1211820 | Msa1344190 | 0.810292 | 1.239521e-50 | -8.615850e-47 |
| Msa0547920 | Msa1344190 | 0.807326 | 5.339335e-50 | -8.615850e-47 |
| Msa0550490 | Msa1344190 | 0.802238 | 6.169487e-49 | -8.615850e-47 |
| Msa0554210 | Msa1344190 | 0.822270 | 2.591273e-53 | -8.615850e-47 |
| Msa0877540 | Msa1344190 | 0.828598 | 8.224813e-55 | -8.615850e-47 |
| Msa0929700 | Msa1344190 | 0.802712 | 4.924834e-49 | -8.615850e-47 |
| Msa0930890 | Msa1344190 | 0.827522 | 1.493178e-54 | -8.615850e-47 |
| Msa0943180 | Msa1344190 | 0.823218 | 1.559459e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344190 | MtrunA17_Chr1g0207701 | 92.784 | 97 | 7 | 0 | 1 | 97 | 1 | 97 | 8.07e-48 | 147 |
| Msa1344190 | MtrunA17_Chr5g0401651 | 49.495 | 99 | 37 | 4 | 1 | 95 | 1 | 90 | 4.80e-14 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344190 | AT2G15000.5 | 55.238 | 105 | 41 | 4 | 1 | 103 | 1 | 101 | 3.58e-24 | 88.6 |
| Msa1344190 | AT2G15000.7 | 55.238 | 105 | 41 | 4 | 1 | 103 | 1 | 101 | 3.58e-24 | 88.6 |
| Msa1344190 | AT2G15000.4 | 55.238 | 105 | 41 | 4 | 1 | 103 | 1 | 101 | 3.58e-24 | 88.6 |
| Msa1344190 | AT2G15000.6 | 55.238 | 105 | 41 | 4 | 1 | 103 | 1 | 101 | 3.58e-24 | 88.6 |
| Msa1344190 | AT2G15000.1 | 53.608 | 97 | 39 | 4 | 1 | 95 | 1 | 93 | 3.93e-18 | 72.8 |
| Msa1344190 | AT4G34265.5 | 46.491 | 114 | 34 | 5 | 1 | 103 | 1 | 98 | 1.07e-17 | 72.0 |
| Msa1344190 | AT4G34265.4 | 46.491 | 114 | 34 | 5 | 1 | 103 | 1 | 98 | 1.07e-17 | 72.0 |
| Msa1344190 | AT4G34265.3 | 46.491 | 114 | 34 | 5 | 1 | 103 | 1 | 98 | 1.07e-17 | 72.0 |
| Msa1344190 | AT2G15000.3 | 53.125 | 96 | 39 | 4 | 1 | 94 | 1 | 92 | 1.82e-17 | 71.2 |
| Msa1344190 | AT2G15000.2 | 53.125 | 96 | 39 | 4 | 1 | 94 | 1 | 92 | 1.82e-17 | 71.2 |
| Msa1344190 | AT4G34265.2 | 44.340 | 106 | 32 | 5 | 1 | 95 | 1 | 90 | 9.76e-13 | 59.3 |
| Msa1344190 | AT4G34265.1 | 43.396 | 106 | 33 | 5 | 1 | 95 | 1 | 90 | 4.07e-12 | 57.8 |
| Msa1344190 | AT4G34265.6 | 43.396 | 106 | 33 | 5 | 1 | 95 | 1 | 90 | 4.07e-12 | 57.8 |
Find 74 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGTGTTTCTTTCAGTATC+TGG | 0.204771 | tig0006801:-3700 | Msa1344190:three_prime_UTR |
| CCATGCCTGCTACCTCTTCC+AGG | 0.234541 | tig0006801:-6059 | Msa1344190:intron |
| GTGCAGGAATTTGGGGCAAT+TGG | 0.247985 | tig0006801:-5943 | Msa1344190:intron |
| TTATTAATTCTTATTGTATC+TGG | 0.252121 | tig0006801:-3747 | Msa1344190:three_prime_UTR |
| ATAATACTCCCCGTAATTAT+TGG | 0.253421 | tig0006801:+3884 | None:intergenic |
| TAATTACGGGGAGTATTATC+TGG | 0.297004 | tig0006801:-3880 | Msa1344190:three_prime_UTR |
| AAGTAAGGGATGCATGTTAC+AGG | 0.318032 | tig0006801:-3571 | Msa1344190:three_prime_UTR |
| TCGTGTTTCTTTCAGTATCT+GGG | 0.377668 | tig0006801:-3699 | Msa1344190:three_prime_UTR |
| TGCAGGAATTTGGGGCAATT+GGG | 0.381549 | tig0006801:-5942 | Msa1344190:intron |
| ATATAGAGTGCCAATAATTA+CGG | 0.385464 | tig0006801:-3894 | Msa1344190:three_prime_UTR |
| CGGAGGCGAGGAAGGGAAGA+AGG | 0.397485 | tig0006801:+6126 | None:intergenic |
| ATAACAATGGCGTTGCGATC+TGG | 0.400559 | tig0006801:-6204 | Msa1344190:exon |
| TGGCGAGTGGCGGAGGACGG+AGG | 0.410736 | tig0006801:+6109 | None:intergenic |
| GAGAAATGGAGGGTACCATT+TGG | 0.417341 | tig0006801:+3640 | None:intergenic |
| CGAGGGGTGGCGAGTGGCGG+AGG | 0.419804 | tig0006801:+6102 | None:intergenic |
| TTTATAGGGAATGGAAAAGA+TGG | 0.419851 | tig0006801:-5494 | Msa1344190:intron |
| ATGGAATAGGCTTTGAGAAA+TGG | 0.436563 | tig0006801:+3626 | None:intergenic |
| GCGGAGGACGGAGGCGAGGA+AGG | 0.437115 | tig0006801:+6118 | None:intergenic |
| TATAGAGTGCCAATAATTAC+GGG | 0.445156 | tig0006801:-3893 | Msa1344190:three_prime_UTR |
| AGAAGGAGCCGCCGGACGAA+GGG | 0.456281 | tig0006801:+6143 | None:intergenic |
| TATTGTTGTTAGTCATGAGT+TGG | 0.469273 | tig0006801:-3666 | Msa1344190:three_prime_UTR |
| ATTGTTGTTAGTCATGAGTT+GGG | 0.471035 | tig0006801:-3665 | Msa1344190:three_prime_UTR |
| AAGAGGCGGGGCTGAGTGCG+AGG | 0.481512 | tig0006801:+6084 | None:intergenic |
| GGCCAGGTCTTCCCTTCGTC+CGG | 0.483656 | tig0006801:-6154 | Msa1344190:CDS |
| AGCAGGCATGGAAAAGAGGC+GGG | 0.485396 | tig0006801:+6071 | None:intergenic |
| AAGGACATCGATCATCCAAT+GGG | 0.489534 | tig0006801:-5462 | Msa1344190:three_prime_UTR |
| AGACCTGGCCGTGGAGATGA+AGG | 0.492112 | tig0006801:+6167 | None:intergenic |
| AACGCCATTGTTATGTGTAT+AGG | 0.495844 | tig0006801:+6213 | None:intergenic |
| GAATAGGCTTTGAGAAATGG+AGG | 0.497614 | tig0006801:+3629 | None:intergenic |
| GCTCCTTCATCTCCACGGCC+AGG | 0.498839 | tig0006801:-6170 | Msa1344190:CDS |
| CGGAGGACGGAGGCGAGGAA+GGG | 0.500771 | tig0006801:+6119 | None:intergenic |
| GTGCGAGGGGTGGCGAGTGG+CGG | 0.502077 | tig0006801:+6099 | None:intergenic |
| CAGTTACTTGAGCAAGCTGT+TGG | 0.507883 | tig0006801:-3939 | Msa1344190:three_prime_UTR |
| CAGCATTCGTCTCTCCCCAT+TGG | 0.512363 | tig0006801:+5447 | None:intergenic |
| CCTGGAAGAGGTAGCAGGCA+TGG | 0.513058 | tig0006801:+6059 | None:intergenic |
| CGCCGGACGAAGGGAAGACC+TGG | 0.513153 | tig0006801:+6152 | None:intergenic |
| GGGTGGCGAGTGGCGGAGGA+CGG | 0.517554 | tig0006801:+6106 | None:intergenic |
| TTAGGGTTTGGACCTGGAAG+AGG | 0.524458 | tig0006801:+6047 | None:intergenic |
| TTGGACCTGGAAGAGGTAGC+AGG | 0.529380 | tig0006801:+6054 | None:intergenic |
| AGGTAGCAGGCATGGAAAAG+AGG | 0.531493 | tig0006801:+6067 | None:intergenic |
| AGTGGCGGAGGACGGAGGCG+AGG | 0.533816 | tig0006801:+6114 | None:intergenic |
| ACAAGACCCGTGCGGCGCAC+GGG | 0.537174 | tig0006801:-6298 | None:intergenic |
| ACGAAGGGAAGACCTGGCCG+TGG | 0.538799 | tig0006801:+6158 | None:intergenic |
| AGAGGCGGGGCTGAGTGCGA+GGG | 0.539518 | tig0006801:+6085 | None:intergenic |
| AAGAAGGAGCCGCCGGACGA+AGG | 0.539975 | tig0006801:+6142 | None:intergenic |
| ATCTCGCTCCTTCATCTCCA+CGG | 0.540316 | tig0006801:-6175 | Msa1344190:CDS |
| GAGTATTATCTGGGAAGTAA+TGG | 0.542717 | tig0006801:-3870 | Msa1344190:three_prime_UTR |
| AAGCTCGTGCGCTGACGGCA+AGG | 0.543327 | tig0006801:+5859 | None:intergenic |
| GAGGCGGGGCTGAGTGCGAG+GGG | 0.547076 | tig0006801:+6086 | None:intergenic |
| GGAAGGGAAGAAGGAGCCGC+CGG | 0.548993 | tig0006801:+6135 | None:intergenic |
| GCGGGGCTGAGTGCGAGGGG+TGG | 0.550387 | tig0006801:+6089 | None:intergenic |
| TGAGTGCGAGGGGTGGCGAG+TGG | 0.550653 | tig0006801:+6096 | None:intergenic |
| TTATAGGGAATGGAAAAGAT+GGG | 0.555551 | tig0006801:-5493 | Msa1344190:intron |
| CAAGGACATCGATCATCCAA+TGG | 0.558518 | tig0006801:-5463 | Msa1344190:three_prime_UTR |
| GCTACAAGCTCGTGCGCTGA+CGG | 0.567501 | tig0006801:+5854 | None:intergenic |
| CGTGTTTCTTTCAGTATCTG+GGG | 0.571412 | tig0006801:-3698 | Msa1344190:three_prime_UTR |
| AGAACGACGGAAGGTACCAT+TGG | 0.577356 | tig0006801:+5824 | None:intergenic |
| TAGCAGGCATGGAAAAGAGG+CGG | 0.583179 | tig0006801:+6070 | None:intergenic |
| AATTACGGGGAGTATTATCT+GGG | 0.583825 | tig0006801:-3879 | Msa1344190:three_prime_UTR |
| TTTGTTGGTGCAGGAATTTG+GGG | 0.587970 | tig0006801:-5950 | Msa1344190:intron |
| GCTTGTAGCGAGCTGTCCAA+TGG | 0.595505 | tig0006801:-5840 | Msa1344190:CDS |
| GAAAAGATGGGTGATGCGCA+AGG | 0.615793 | tig0006801:-5481 | Msa1344190:three_prime_UTR |
| ACAGCCATCGTGCTATGCAG+TGG | 0.621490 | tig0006801:+5900 | None:intergenic |
| ATCTTGACAAGAACGACGGA+AGG | 0.626544 | tig0006801:+5815 | None:intergenic |
| CAGGTCTTCCCTTCGTCCGG+CGG | 0.627826 | tig0006801:-6151 | Msa1344190:CDS |
| GTCATGAGTTGGGATCCAAA+TGG | 0.640332 | tig0006801:-3655 | Msa1344190:three_prime_UTR |
| GCAGGCATGGAAAAGAGGCG+GGG | 0.645770 | tig0006801:+6072 | None:intergenic |
| TTTGCCACTGCATAGCACGA+TGG | 0.666045 | tig0006801:-5904 | Msa1344190:CDS |
| TTCTCCTATACACATAACAA+TGG | 0.666341 | tig0006801:-6217 | Msa1344190:exon |
| AATAGGCTTTGAGAAATGGA+GGG | 0.681330 | tig0006801:+3630 | None:intergenic |
| TAAGGGATGCATGTTACAGG+CGG | 0.682564 | tig0006801:-3568 | Msa1344190:three_prime_UTR |
| AGCGATCTTGACAAGAACGA+CGG | 0.707528 | tig0006801:+5811 | None:intergenic |
| ATAGAGTGCCAATAATTACG+GGG | 0.755091 | tig0006801:-3892 | Msa1344190:three_prime_UTR |
| AGGACATCGATCATCCAATG+GGG | 0.763566 | tig0006801:-5461 | Msa1344190:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTAAGATTTTAATTTAT+AGG | - | tig0006801:4320-4339 | Msa1344190:intron | 10.0% |
| !!! | TCTGTTTTTTTTTTTTTTTA+TGG | - | tig0006801:5713-5732 | Msa1344190:intron | 10.0% |
| !!! | AGTTTTTTTTTTTTTTTGTA+TGG | + | tig0006801:6229-6248 | None:intergenic | 10.0% |
| !!! | TTTAAATTTTCATAATCTCA+AGG | + | tig0006801:4587-4606 | None:intergenic | 15.0% |
| !! | TTGTAAGTTGTTAAAATATA+TGG | - | tig0006801:4678-4697 | Msa1344190:intron | 15.0% |
| !! | AAAATAAAGAATTTGTAGTT+GGG | + | tig0006801:5414-5433 | None:intergenic | 15.0% |
| !! | TAAAAATACTTAGTATTACA+CGG | + | tig0006801:5852-5871 | None:intergenic | 15.0% |
| !! | TTATTAATTCTTATTGTATC+TGG | - | tig0006801:6082-6101 | Msa1344190:CDS | 15.0% |
| !!! | TTTTTTTTTTTTTGTATGGA+TGG | + | tig0006801:6225-6244 | None:intergenic | 15.0% |
| !!! | AAAACTCTTTATTTTAAGTA+AGG | - | tig0006801:6243-6262 | Msa1344190:five_prime_UTR | 15.0% |
| !!! | AAACTCTTTATTTTAAGTAA+GGG | - | tig0006801:6244-6263 | Msa1344190:five_prime_UTR | 15.0% |
| !!! | CAACATGATTAAAACATTTT+CGG | + | tig0006801:4082-4101 | None:intergenic | 20.0% |
| !!! | AAAAAACACATTTTTGTGAA+GGG | + | tig0006801:4128-4147 | None:intergenic | 20.0% |
| !!! | AAAAAAACACATTTTTGTGA+AGG | + | tig0006801:4129-4148 | None:intergenic | 20.0% |
| !!! | AGATTTTAATTTATAGGGAA+TGG | - | tig0006801:4326-4345 | Msa1344190:intron | 20.0% |
| !!! | ATTTTGACAAAGGAATAAAA+GGG | + | tig0006801:4425-4444 | None:intergenic | 20.0% |
| !!! | AATTTTGACAAAGGAATAAA+AGG | + | tig0006801:4426-4445 | None:intergenic | 20.0% |
| !!! | TGAATTCATAATTTTGACAA+AGG | + | tig0006801:4435-4454 | None:intergenic | 20.0% |
| !! | AACAGTAAGTGTTTAAATAT+CGG | - | tig0006801:4709-4728 | Msa1344190:intron | 20.0% |
| !! | AAGAATGAAAAATGAACATT+CGG | + | tig0006801:4852-4871 | None:intergenic | 20.0% |
| !! | TATTAGAATAACTGATGAAA+GGG | + | tig0006801:5276-5295 | None:intergenic | 20.0% |
| !! | TGTTTAACCATAATAACAAT+GGG | + | tig0006801:5364-5383 | None:intergenic | 20.0% |
| !! | ATGTTTAACCATAATAACAA+TGG | + | tig0006801:5365-5384 | None:intergenic | 20.0% |
| !! | CAAAATAAAGAATTTGTAGT+TGG | + | tig0006801:5415-5434 | None:intergenic | 20.0% |
| !!! | TTTGAAAAATGAGATTTTTG+TGG | - | tig0006801:5431-5450 | Msa1344190:intron | 20.0% |
| !! | AAAAACAGAAATTTCCAAAA+AGG | + | tig0006801:5702-5721 | None:intergenic | 20.0% |
| !! | AATATAAAAAACAGGTTCTT+TGG | + | tig0006801:6036-6055 | None:intergenic | 20.0% |
| !! | ACAGTTTGAATATAAAAAAC+AGG | + | tig0006801:6044-6063 | None:intergenic | 20.0% |
| !! | TCACAAAGAAAGAGTTTTTA+GGG | + | tig0006801:3592-3611 | None:intergenic | 25.0% |
| !! | ATCACAAAGAAAGAGTTTTT+AGG | + | tig0006801:3593-3612 | None:intergenic | 25.0% |
| !!! | TCTGAATGTGTTTTTTTTGT+TGG | - | tig0006801:3864-3883 | Msa1344190:three_prime_UTR | 25.0% |
| !! | AAAAACACATTTTTGTGAAG+GGG | + | tig0006801:4127-4146 | None:intergenic | 25.0% |
| !! | TTTCTAAGGAAAAATCTAAC+TGG | + | tig0006801:4528-4547 | None:intergenic | 25.0% |
| ! | ACAGTAAGTGTTTAAATATC+GGG | - | tig0006801:4710-4729 | Msa1344190:intron | 25.0% |
| !!! | AATTTTGTTTCCATTGTATG+TGG | - | tig0006801:4895-4914 | Msa1344190:intron | 25.0% |
| ! | CAATAAAATACCACATACAA+TGG | + | tig0006801:4908-4927 | None:intergenic | 25.0% |
| !!! | TCTTAGGTTTTGATTCATTT+AGG | + | tig0006801:4982-5001 | None:intergenic | 25.0% |
| !!! | TTTTTCAACTAGAAGTATAG+AGG | - | tig0006801:5125-5144 | Msa1344190:intron | 25.0% |
| ! | GTATTAGAATAACTGATGAA+AGG | + | tig0006801:5277-5296 | None:intergenic | 25.0% |
| !! | CTAAATTCCCATTGTTATTA+TGG | - | tig0006801:5354-5373 | Msa1344190:intron | 25.0% |
| !! | ATATAGAGTGCCAATAATTA+CGG | - | tig0006801:5935-5954 | Msa1344190:CDS | 25.0% |
| !!! | TTCTTATTGTATCTGGTTTT+TGG | - | tig0006801:6089-6108 | Msa1344190:CDS | 25.0% |
| !!! | TTTTTTTGTATGGATGGAAT+AGG | + | tig0006801:6219-6238 | None:intergenic | 25.0% |
| TTCTCCTATACACATAACAA+TGG | - | tig0006801:3612-3631 | Msa1344190:three_prime_UTR | 30.0% | |
| TCTAGAAATCCTTAGATTGT+AGG | - | tig0006801:4196-4215 | Msa1344190:intron | 30.0% | |
| CTAATTGTACCTACAATCTA+AGG | + | tig0006801:4208-4227 | None:intergenic | 30.0% | |
| TTTATAGGGAATGGAAAAGA+TGG | - | tig0006801:4335-4354 | Msa1344190:intron | 30.0% | |
| TTATAGGGAATGGAAAAGAT+GGG | - | tig0006801:4336-4355 | Msa1344190:intron | 30.0% | |
| ! | TCCTTCTTAAGAGTATGTTA+GGG | - | tig0006801:4645-4664 | Msa1344190:intron | 30.0% |
| CTGACAGTTTAATAGAGTAA+GGG | - | tig0006801:4739-4758 | Msa1344190:intron | 30.0% | |
| TGACAGTTTAATAGAGTAAG+GGG | - | tig0006801:4740-4759 | Msa1344190:intron | 30.0% | |
| ! | GAAGATATTTTCTGTGTAAG+CGG | - | tig0006801:4936-4955 | Msa1344190:intron | 30.0% |
| !! | TTTTGATTCATTTAGGACTG+AGG | + | tig0006801:4975-4994 | None:intergenic | 30.0% |
| ATCATTAGGGATACAATCTT+AGG | + | tig0006801:4998-5017 | None:intergenic | 30.0% | |
| ! | GATTGTATCCCTAATGATTT+TGG | - | tig0006801:5000-5019 | Msa1344190:intron | 30.0% |
| TAGCAATGCCAAAATCATTA+GGG | + | tig0006801:5011-5030 | None:intergenic | 30.0% | |
| ! | GTGTAGAAACTTGATAACAT+GGG | + | tig0006801:5063-5082 | None:intergenic | 30.0% |
| TGACAATAGCATTTCAAGAA+AGG | + | tig0006801:5085-5104 | None:intergenic | 30.0% | |
| AAAGTGAACGAATTTATGCA+TGG | + | tig0006801:5204-5223 | None:intergenic | 30.0% | |
| CTGAAGATTTCAAATTGTCT+TGG | + | tig0006801:5491-5510 | None:intergenic | 30.0% | |
| ! | CAAGACAATTTGAAATCTTC+AGG | - | tig0006801:5489-5508 | Msa1344190:three_prime_UTR | 30.0% |
| !!! | AGTCTGTATTTTTAGTGTGA+AGG | - | tig0006801:5539-5558 | Msa1344190:intron | 30.0% |
| ! | AGGGTACTATTTATGAAAGT+GGG | - | tig0006801:5782-5801 | Msa1344190:intron | 30.0% |
| ! | TATAGAGTGCCAATAATTAC+GGG | - | tig0006801:5936-5955 | Msa1344190:CDS | 30.0% |
| ATAATACTCCCCGTAATTAT+TGG | + | tig0006801:5948-5967 | None:intergenic | 30.0% | |
| !!! | TCTGTTATGTTTTTTGACTC+CGG | - | tig0006801:6009-6028 | Msa1344190:intron | 30.0% |
| ! | TATTGTTGTTAGTCATGAGT+TGG | - | tig0006801:6163-6182 | Msa1344190:CDS | 30.0% |
| ! | ATTGTTGTTAGTCATGAGTT+GGG | - | tig0006801:6164-6183 | Msa1344190:CDS | 30.0% |
| !!! | GAGTTTTTAGGGTTTTGTGA+GGG | + | tig0006801:3581-3600 | None:intergenic | 35.0% |
| !!! | AGAGTTTTTAGGGTTTTGTG+AGG | + | tig0006801:3582-3601 | None:intergenic | 35.0% |
| AACGCCATTGTTATGTGTAT+AGG | + | tig0006801:3619-3638 | None:intergenic | 35.0% | |
| TTGAATTGGGAATTAGGGTT+TGG | + | tig0006801:3797-3816 | None:intergenic | 35.0% | |
| TGAGCTTGAATTGGGAATTA+GGG | + | tig0006801:3802-3821 | None:intergenic | 35.0% | |
| TTGAGCTTGAATTGGGAATT+AGG | + | tig0006801:3803-3822 | None:intergenic | 35.0% | |
| ATTGTCGTTGAGCTTGAATT+GGG | + | tig0006801:3810-3829 | None:intergenic | 35.0% | |
| !!! | TGTGTTTTTTTTGTTGGTGC+AGG | - | tig0006801:3870-3889 | Msa1344190:three_prime_UTR | 35.0% |
| ! | TTTTTGTTGGTGCAGGAATT+TGG | - | tig0006801:3877-3896 | Msa1344190:three_prime_UTR | 35.0% |
| ! | TTTTGTTGGTGCAGGAATTT+GGG | - | tig0006801:3878-3897 | Msa1344190:three_prime_UTR | 35.0% |
| AAGGGGTCTGAAAATCATTA+TGG | + | tig0006801:4110-4129 | None:intergenic | 35.0% | |
| ! | TTTTGCTTCATGTGAAGAGA+TGG | - | tig0006801:4251-4270 | Msa1344190:intron | 35.0% |
| ! | TTCATGTGAAGAGATGGATT+GGG | - | tig0006801:4257-4276 | Msa1344190:intron | 35.0% |
| !! | GAATGCTGCTTTCTATTTGT+AGG | - | tig0006801:4397-4416 | Msa1344190:intron | 35.0% |
| CATCTCTAACAATCATCAAC+CGG | + | tig0006801:4495-4514 | None:intergenic | 35.0% | |
| GATGATTGTTAGAGATGATC+TGG | - | tig0006801:4498-4517 | Msa1344190:intron | 35.0% | |
| ! | GTCCTTCTTAAGAGTATGTT+AGG | - | tig0006801:4644-4663 | Msa1344190:intron | 35.0% |
| TCCCTAACATACTCTTAAGA+AGG | + | tig0006801:4649-4668 | None:intergenic | 35.0% | |
| ACTCTATTAAACTGTCAGGT+TGG | + | tig0006801:4737-4756 | None:intergenic | 35.0% | |
| CCTTACTCTATTAAACTGTC+AGG | + | tig0006801:4741-4760 | None:intergenic | 35.0% | |
| CCTGACAGTTTAATAGAGTA+AGG | - | tig0006801:4738-4757 | Msa1344190:intron | 35.0% | |
| AAATTAACCCTCGACTTTGT+AGG | + | tig0006801:4808-4827 | None:intergenic | 35.0% | |
| TACAAAGTCGAGGGTTAATT+TGG | - | tig0006801:4807-4826 | Msa1344190:intron | 35.0% | |
| !! | GAACATTCGGTTTTGATGTT+TGG | + | tig0006801:4839-4858 | None:intergenic | 35.0% |
| CTAGCAATGCCAAAATCATT+AGG | + | tig0006801:5012-5031 | None:intergenic | 35.0% | |
| !! | CTAATGATTTTGGCATTGCT+AGG | - | tig0006801:5010-5029 | Msa1344190:intron | 35.0% |
| ! | GGTGTAGAAACTTGATAACA+TGG | + | tig0006801:5064-5083 | None:intergenic | 35.0% |
| ! | CCATCTACATGACATTTTGA+GGG | + | tig0006801:5154-5173 | None:intergenic | 35.0% |
| CCTCAAAATGTCATGTAGAT+GGG | - | tig0006801:5152-5171 | Msa1344190:intron | 35.0% | |
| AATTTGTAGTTGGGTCAAAG+AGG | + | tig0006801:5405-5424 | None:intergenic | 35.0% | |
| AATCTTCAGGAAGTTTGTCA+TGG | - | tig0006801:5502-5521 | Msa1344190:intron | 35.0% | |
| AGGACTGCTTACTATACTTA+AGG | - | tig0006801:5641-5660 | Msa1344190:intron | 35.0% | |
| ! | CTTAAGGTCTTTGTTTGAAG+TGG | - | tig0006801:5657-5676 | Msa1344190:intron | 35.0% |
| ! | GTGTTATGACAACTCCTTTT+TGG | - | tig0006801:5685-5704 | Msa1344190:intron | 35.0% |
| !! | GAGGGTACTATTTATGAAAG+TGG | - | tig0006801:5781-5800 | Msa1344190:intron | 35.0% |
| ! | ATAGAGTGCCAATAATTACG+GGG | - | tig0006801:5937-5956 | Msa1344190:CDS | 35.0% |
| !! | TAATTACGGGGAGTATTATC+TGG | - | tig0006801:5949-5968 | Msa1344190:intron | 35.0% |
| !! | AATTACGGGGAGTATTATCT+GGG | - | tig0006801:5950-5969 | Msa1344190:intron | 35.0% |
| GAGTATTATCTGGGAAGTAA+TGG | - | tig0006801:5959-5978 | Msa1344190:intron | 35.0% | |
| AAAAAACAGGTTCTTTGGTC+CGG | + | tig0006801:6031-6050 | None:intergenic | 35.0% | |
| ATCGTGTTTCTTTCAGTATC+TGG | - | tig0006801:6129-6148 | Msa1344190:CDS | 35.0% | |
| TCGTGTTTCTTTCAGTATCT+GGG | - | tig0006801:6130-6149 | Msa1344190:CDS | 35.0% | |
| !! | AATAGGCTTTGAGAAATGGA+GGG | + | tig0006801:6202-6221 | None:intergenic | 35.0% |
| !! | ATGGAATAGGCTTTGAGAAA+TGG | + | tig0006801:6206-6225 | None:intergenic | 35.0% |
| CATTGTCGTTGAGCTTGAAT+TGG | + | tig0006801:3811-3830 | None:intergenic | 40.0% | |
| TTTGTTGGTGCAGGAATTTG+GGG | - | tig0006801:3879-3898 | Msa1344190:three_prime_UTR | 40.0% | |
| ! | GTGAGTCTTGTCTGTTCTAT+AGG | - | tig0006801:4053-4072 | Msa1344190:intron | 40.0% |
| CTTCATGTGAAGAGATGGAT+TGG | - | tig0006801:4256-4275 | Msa1344190:intron | 40.0% | |
| ! | TTTGTGAGTCTGTCTAGCTT+TGG | - | tig0006801:4286-4305 | Msa1344190:intron | 40.0% |
| AAGGACATCGATCATCCAAT+GGG | - | tig0006801:4367-4386 | Msa1344190:intron | 40.0% | |
| GATTGTTAGAGATGATCTGG+AGG | - | tig0006801:4501-4520 | Msa1344190:intron | 40.0% | |
| CGGTCAAGGATGAATTTCTA+AGG | + | tig0006801:4542-4561 | None:intergenic | 40.0% | |
| CCCTCAAAATGTCATGTAGA+TGG | - | tig0006801:5151-5170 | Msa1344190:intron | 40.0% | |
| ! | CCCATCTACATGACATTTTG+AGG | + | tig0006801:5155-5174 | None:intergenic | 40.0% |
| TCATGTAGATGGGAAACTCT+TGG | - | tig0006801:5162-5181 | Msa1344190:intron | 40.0% | |
| CTGGAAAAACAGCCATTTCA+AGG | + | tig0006801:5253-5272 | None:intergenic | 40.0% | |
| AGAATAACTGATGAAAGGGC+TGG | + | tig0006801:5272-5291 | None:intergenic | 40.0% | |
| GTAAACTCCATTCCTTTCAC+AGG | - | tig0006801:5306-5325 | Msa1344190:intron | 40.0% | |
| ! | GGAATTTAGAACATCACCTC+AGG | + | tig0006801:5343-5362 | None:intergenic | 40.0% |
| ! | AGCAAGCTGTTGGATTTTCA+TGG | - | tig0006801:5900-5919 | Msa1344190:CDS | 40.0% |
| CGTGTTTCTTTCAGTATCTG+GGG | - | tig0006801:6131-6150 | Msa1344190:CDS | 40.0% | |
| !! | GAATAGGCTTTGAGAAATGG+AGG | + | tig0006801:6203-6222 | None:intergenic | 40.0% |
| AAGTAAGGGATGCATGTTAC+AGG | - | tig0006801:6258-6277 | Msa1344190:five_prime_UTR | 40.0% | |
| ATAACAATGGCGTTGCGATC+TGG | - | tig0006801:3625-3644 | Msa1344190:three_prime_UTR | 45.0% | |
| ! | TGCAGGAATTTGGGGCAATT+GGG | - | tig0006801:3887-3906 | Msa1344190:three_prime_UTR | 45.0% |
| ATCTTGACAAGAACGACGGA+AGG | + | tig0006801:4017-4036 | None:intergenic | 45.0% | |
| AGCGATCTTGACAAGAACGA+CGG | + | tig0006801:4021-4040 | None:intergenic | 45.0% | |
| CAAGGACATCGATCATCCAA+TGG | - | tig0006801:4366-4385 | Msa1344190:intron | 45.0% | |
| AGGACATCGATCATCCAATG+GGG | - | tig0006801:4368-4387 | Msa1344190:intron | 45.0% | |
| AAATTCATCCTTGACCGTGC+AGG | - | tig0006801:4545-4564 | Msa1344190:intron | 45.0% | |
| AATTCATCCTTGACCGTGCA+GGG | - | tig0006801:4546-4565 | Msa1344190:intron | 45.0% | |
| CCATTTCAAGGACACTTGCA+GGG | + | tig0006801:5241-5260 | None:intergenic | 45.0% | |
| AGGATCACCTGTGAAAGGAA+TGG | + | tig0006801:5316-5335 | None:intergenic | 45.0% | |
| GAATCAGGATCACCTGTGAA+AGG | + | tig0006801:5321-5340 | None:intergenic | 45.0% | |
| AGAACATCACCTCAGGAATC+AGG | + | tig0006801:5336-5355 | None:intergenic | 45.0% | |
| ! | AGGTCTTTGTTTGAAGTGGC+TGG | - | tig0006801:5661-5680 | Msa1344190:intron | 45.0% |
| AAGTGGGATGATCTGATGAC+AGG | - | tig0006801:5798-5817 | Msa1344190:intron | 45.0% | |
| CAGTTACTTGAGCAAGCTGT+TGG | - | tig0006801:5890-5909 | Msa1344190:CDS | 45.0% | |
| ! | GTCATGAGTTGGGATCCAAA+TGG | - | tig0006801:6174-6193 | Msa1344190:CDS | 45.0% |
| !! | GAGAAATGGAGGGTACCATT+TGG | + | tig0006801:6192-6211 | None:intergenic | 45.0% |
| TAAGGGATGCATGTTACAGG+CGG | - | tig0006801:6261-6280 | Msa1344190:five_prime_UTR | 45.0% | |
| !!! | TATTAAGATTTTAATTTATA+GGG | - | tig0006801:4321-4340 | Msa1344190:intron | 5.0% |
| !! | ATAAAAATAAAATTTATATC+AGG | - | tig0006801:5621-5640 | Msa1344190:intron | 5.0% |
| ATCTCGCTCCTTCATCTCCA+CGG | - | tig0006801:3654-3673 | Msa1344190:three_prime_UTR | 50.0% | |
| TAGCAGGCATGGAAAAGAGG+CGG | + | tig0006801:3762-3781 | None:intergenic | 50.0% | |
| AGGTAGCAGGCATGGAAAAG+AGG | + | tig0006801:3765-3784 | None:intergenic | 50.0% | |
| TTAGGGTTTGGACCTGGAAG+AGG | + | tig0006801:3785-3804 | None:intergenic | 50.0% | |
| TGGGAATTAGGGTTTGGACC+TGG | + | tig0006801:3791-3810 | None:intergenic | 50.0% | |
| ! | GTGCAGGAATTTGGGGCAAT+TGG | - | tig0006801:3886-3905 | Msa1344190:three_prime_UTR | 50.0% |
| TTTGCCACTGCATAGCACGA+TGG | - | tig0006801:3925-3944 | Msa1344190:three_prime_UTR | 50.0% | |
| !! | AGAACGACGGAAGGTACCAT+TGG | + | tig0006801:4008-4027 | None:intergenic | 50.0% |
| GAAAAGATGGGTGATGCGCA+AGG | - | tig0006801:4348-4367 | Msa1344190:intron | 50.0% | |
| CCCTGCAAGTGTCCTTGAAA+TGG | - | tig0006801:5238-5257 | Msa1344190:intron | 50.0% | |
| GCCATTTCAAGGACACTTGC+AGG | + | tig0006801:5242-5261 | None:intergenic | 50.0% | |
| ACAGGTGATCCTGATTCCTG+AGG | - | tig0006801:5324-5343 | Msa1344190:intron | 50.0% | |
| AGCAGGCATGGAAAAGAGGC+GGG | + | tig0006801:3761-3780 | None:intergenic | 55.0% | |
| TTGGACCTGGAAGAGGTAGC+AGG | + | tig0006801:3778-3797 | None:intergenic | 55.0% | |
| ACAGCCATCGTGCTATGCAG+TGG | + | tig0006801:3932-3951 | None:intergenic | 55.0% | |
| GCTTGTAGCGAGCTGTCCAA+TGG | - | tig0006801:3989-4008 | Msa1344190:intron | 55.0% | |
| CAGCATTCGTCTCTCCCCAT+TGG | + | tig0006801:4385-4404 | None:intergenic | 55.0% | |
| TGTGCGTGTGAGTGAGTGAC+CGG | - | tig0006801:4473-4492 | Msa1344190:intron | 55.0% | |
| !! | CAATTTGAGAGCGCCCTGCA+CGG | + | tig0006801:4562-4581 | None:intergenic | 55.0% |
| !! | TGAGAGCGCCTACAAAGTCG+AGG | - | tig0006801:4797-4816 | Msa1344190:intron | 55.0% |
| !! | GAGAGCGCCTACAAAGTCGA+GGG | - | tig0006801:4798-4817 | Msa1344190:intron | 55.0% |
| ATGCATGCTCGTGAGTCGTG+AGG | - | tig0006801:5762-5781 | Msa1344190:intron | 55.0% | |
| TGCATGCTCGTGAGTCGTGA+GGG | - | tig0006801:5763-5782 | Msa1344190:intron | 55.0% | |
| AGACCTGGCCGTGGAGATGA+AGG | + | tig0006801:3665-3684 | None:intergenic | 60.0% | |
| GCAGGCATGGAAAAGAGGCG+GGG | + | tig0006801:3760-3779 | None:intergenic | 60.0% | |
| CCTGGAAGAGGTAGCAGGCA+TGG | + | tig0006801:3773-3792 | None:intergenic | 60.0% | |
| CCATGCCTGCTACCTCTTCC+AGG | - | tig0006801:3770-3789 | Msa1344190:three_prime_UTR | 60.0% | |
| GCTACAAGCTCGTGCGCTGA+CGG | + | tig0006801:3978-3997 | None:intergenic | 60.0% | |
| ! | CGTGCAGGGCGCTCTCAAAT+TGG | - | tig0006801:4560-4579 | Msa1344190:intron | 60.0% |
| GCTCCTTCATCTCCACGGCC+AGG | - | tig0006801:3659-3678 | Msa1344190:three_prime_UTR | 65.0% | |
| ACGAAGGGAAGACCTGGCCG+TGG | + | tig0006801:3674-3693 | None:intergenic | 65.0% | |
| GGCCAGGTCTTCCCTTCGTC+CGG | - | tig0006801:3675-3694 | Msa1344190:three_prime_UTR | 65.0% | |
| CAGGTCTTCCCTTCGTCCGG+CGG | - | tig0006801:3678-3697 | Msa1344190:three_prime_UTR | 65.0% | |
| AGAAGGAGCCGCCGGACGAA+GGG | + | tig0006801:3689-3708 | None:intergenic | 65.0% | |
| AAGAAGGAGCCGCCGGACGA+AGG | + | tig0006801:3690-3709 | None:intergenic | 65.0% | |
| GGAAGGGAAGAAGGAGCCGC+CGG | + | tig0006801:3697-3716 | None:intergenic | 65.0% | |
| CGGAGGCGAGGAAGGGAAGA+AGG | + | tig0006801:3706-3725 | None:intergenic | 65.0% | |
| ! | AAGCTCGTGCGCTGACGGCA+AGG | + | tig0006801:3973-3992 | None:intergenic | 65.0% |
| CGCCGGACGAAGGGAAGACC+TGG | + | tig0006801:3680-3699 | None:intergenic | 70.0% | |
| CGGAGGACGGAGGCGAGGAA+GGG | + | tig0006801:3713-3732 | None:intergenic | 70.0% | |
| TGAGTGCGAGGGGTGGCGAG+TGG | + | tig0006801:3736-3755 | None:intergenic | 70.0% | |
| AGAGGCGGGGCTGAGTGCGA+GGG | + | tig0006801:3747-3766 | None:intergenic | 70.0% | |
| AAGAGGCGGGGCTGAGTGCG+AGG | + | tig0006801:3748-3767 | None:intergenic | 70.0% | |
| !! | GAGAGCGCCCTGCACGGTCA+AGG | + | tig0006801:4556-4575 | None:intergenic | 70.0% |
| GCGGAGGACGGAGGCGAGGA+AGG | + | tig0006801:3714-3733 | None:intergenic | 75.0% | |
| ! | AGTGGCGGAGGACGGAGGCG+AGG | + | tig0006801:3718-3737 | None:intergenic | 75.0% |
| ! | TGGCGAGTGGCGGAGGACGG+AGG | + | tig0006801:3723-3742 | None:intergenic | 75.0% |
| ! | GGGTGGCGAGTGGCGGAGGA+CGG | + | tig0006801:3726-3745 | None:intergenic | 75.0% |
| GTGCGAGGGGTGGCGAGTGG+CGG | + | tig0006801:3733-3752 | None:intergenic | 75.0% | |
| GAGGCGGGGCTGAGTGCGAG+GGG | + | tig0006801:3746-3765 | None:intergenic | 75.0% | |
| ! | CGAGGGGTGGCGAGTGGCGG+AGG | + | tig0006801:3730-3749 | None:intergenic | 80.0% |
| ! | GCGGGGCTGAGTGCGAGGGG+TGG | + | tig0006801:3743-3762 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006801 | gene | 3546 | 6305 | 3546 | ID=Msa1344190;Name=Msa1344190 |
| tig0006801 | mRNA | 3546 | 6305 | 3546 | ID=Msa1344190-mRNA-1;Parent=Msa1344190;Name=Msa1344190-mRNA-1;_AED=0.16;_eAED=0.16;_QI=85|1|1|1|0.33|0.25|4|496|103 |
| tig0006801 | exon | 3546 | 3958 | 3546 | ID=Msa1344190-mRNA-1:exon:4423;Parent=Msa1344190-mRNA-1 |
| tig0006801 | exon | 5437 | 5509 | 5437 | ID=Msa1344190-mRNA-1:exon:4422;Parent=Msa1344190-mRNA-1 |
| tig0006801 | exon | 5799 | 5959 | 5799 | ID=Msa1344190-mRNA-1:exon:4421;Parent=Msa1344190-mRNA-1 |
| tig0006801 | exon | 6060 | 6305 | 6060 | ID=Msa1344190-mRNA-1:exon:4420;Parent=Msa1344190-mRNA-1 |
| tig0006801 | five_prime_UTR | 6221 | 6305 | 6221 | ID=Msa1344190-mRNA-1:five_prime_utr;Parent=Msa1344190-mRNA-1 |
| tig0006801 | CDS | 6060 | 6220 | 6060 | ID=Msa1344190-mRNA-1:cds;Parent=Msa1344190-mRNA-1 |
| tig0006801 | CDS | 5809 | 5959 | 5809 | ID=Msa1344190-mRNA-1:cds;Parent=Msa1344190-mRNA-1 |
| tig0006801 | three_prime_UTR | 5799 | 5808 | 5799 | ID=Msa1344190-mRNA-1:three_prime_utr;Parent=Msa1344190-mRNA-1 |
| tig0006801 | three_prime_UTR | 5437 | 5509 | 5437 | ID=Msa1344190-mRNA-1:three_prime_utr;Parent=Msa1344190-mRNA-1 |
| tig0006801 | three_prime_UTR | 3546 | 3958 | 3546 | ID=Msa1344190-mRNA-1:three_prime_utr;Parent=Msa1344190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
