Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879030 | XP_013451591.1 | 94.118 | 238 | 6 | 1 | 1 | 238 | 1 | 230 | 3.57e-167 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879030 | sp|Q9SGA5|OTU12_ARATH | 76.744 | 215 | 42 | 1 | 24 | 238 | 13 | 219 | 1.28e-128 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879030 | A0A072U777 | 94.118 | 238 | 6 | 1 | 1 | 238 | 1 | 230 | 1.71e-167 | 470 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059960 | Msa0879030 | 0.832452 | 9.378104e-56 | -8.615850e-47 |
| Msa0722940 | Msa0879030 | -0.804178 | 2.447439e-49 | -8.615850e-47 |
| Msa0723150 | Msa0879030 | -0.813630 | 2.322781e-51 | -8.615850e-47 |
| Msa0803130 | Msa0879030 | -0.802747 | 4.844549e-49 | -8.615850e-47 |
| Msa0157020 | Msa0879030 | -0.802321 | 5.929862e-49 | -8.615850e-47 |
| Msa0378340 | Msa0879030 | -0.806476 | 8.076904e-50 | -8.615850e-47 |
| Msa0427690 | Msa0879030 | -0.807828 | 4.176466e-50 | -8.615850e-47 |
| Msa0274780 | Msa0879030 | -0.816495 | 5.370909e-52 | -8.615850e-47 |
| Msa0315480 | Msa0879030 | -0.807978 | 3.881138e-50 | -8.615850e-47 |
| Msa0518520 | Msa0879030 | -0.812065 | 5.113306e-51 | -8.615850e-47 |
| Msa0594390 | Msa0879030 | -0.803072 | 4.150066e-49 | -8.615850e-47 |
| Msa0878980 | Msa0879030 | 0.845675 | 3.502815e-59 | -8.615850e-47 |
| Msa0879030 | Msa1220450 | 0.802604 | 5.184871e-49 | -8.615850e-47 |
| Msa0879030 | Msa1220460 | 0.804947 | 1.691644e-49 | -8.615850e-47 |
| Msa0879030 | Msa1220480 | 0.805426 | 1.342313e-49 | -8.615850e-47 |
| Msa0879030 | Msa1259470 | -0.809620 | 1.728907e-50 | -8.615850e-47 |
| Msa0879030 | Msa1365640 | 0.926159 | 6.871163e-91 | -8.615850e-47 |
| Msa0879030 | Msa1376350 | -0.809470 | 1.862156e-50 | -8.615850e-47 |
| Msa0879030 | Msa1382720 | -0.800374 | 1.485430e-48 | -8.615850e-47 |
| Msa0879030 | Msa1407710 | -0.802610 | 5.169998e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879030 | MtrunA17_Chr6g0461741 | 94.118 | 238 | 6 | 1 | 1 | 238 | 1 | 230 | 3.29e-171 | 470 |
| Msa0879030 | MtrunA17_Chr3g0120091 | 57.870 | 216 | 80 | 3 | 25 | 238 | 23 | 229 | 4.09e-91 | 268 |
| Msa0879030 | MtrunA17_Chr1g0180941 | 45.833 | 240 | 114 | 4 | 1 | 236 | 104 | 331 | 8.25e-75 | 230 |
| Msa0879030 | MtrunA17_Chr1g0199461 | 51.364 | 220 | 97 | 3 | 18 | 236 | 146 | 356 | 2.86e-74 | 229 |
| Msa0879030 | MtrunA17_Chr4g0053171 | 36.957 | 92 | 56 | 1 | 77 | 166 | 28 | 119 | 4.37e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879030 | AT3G02070.1 | 76.744 | 215 | 42 | 1 | 24 | 238 | 13 | 219 | 1.31e-129 | 365 |
| Msa0879030 | AT3G02070.2 | 76.744 | 215 | 42 | 1 | 24 | 238 | 13 | 219 | 1.31e-129 | 365 |
| Msa0879030 | AT3G22260.1 | 60.280 | 214 | 75 | 3 | 26 | 238 | 36 | 240 | 1.50e-91 | 270 |
| Msa0879030 | AT3G22260.4 | 59.633 | 218 | 75 | 4 | 26 | 238 | 36 | 245 | 4.49e-90 | 266 |
| Msa0879030 | AT3G22260.3 | 59.633 | 218 | 75 | 4 | 26 | 238 | 36 | 245 | 4.49e-90 | 266 |
| Msa0879030 | AT3G22260.6 | 59.633 | 218 | 75 | 4 | 26 | 238 | 36 | 245 | 4.49e-90 | 266 |
| Msa0879030 | AT3G22260.5 | 59.633 | 218 | 75 | 4 | 26 | 238 | 36 | 245 | 4.49e-90 | 266 |
| Msa0879030 | AT3G22260.2 | 59.633 | 218 | 75 | 4 | 26 | 238 | 36 | 245 | 4.49e-90 | 266 |
| Msa0879030 | AT5G04250.2 | 50.000 | 212 | 94 | 3 | 28 | 238 | 145 | 345 | 1.66e-73 | 227 |
| Msa0879030 | AT5G04250.1 | 50.000 | 212 | 94 | 3 | 28 | 238 | 145 | 345 | 1.66e-73 | 227 |
| Msa0879030 | AT5G03330.1 | 45.570 | 237 | 116 | 4 | 4 | 238 | 129 | 354 | 2.09e-68 | 214 |
| Msa0879030 | AT5G03330.2 | 45.570 | 237 | 116 | 4 | 4 | 238 | 129 | 354 | 2.09e-68 | 214 |
| Msa0879030 | AT5G03330.3 | 45.673 | 208 | 101 | 3 | 4 | 210 | 129 | 325 | 5.98e-58 | 187 |
| Msa0879030 | AT5G03330.4 | 45.673 | 208 | 101 | 3 | 4 | 210 | 129 | 325 | 5.98e-58 | 187 |
| Msa0879030 | AT2G39320.1 | 33.594 | 128 | 57 | 3 | 95 | 221 | 2 | 102 | 2.54e-17 | 77.4 |
| Msa0879030 | AT5G67170.2 | 30.137 | 146 | 88 | 3 | 77 | 219 | 24 | 158 | 2.39e-12 | 66.2 |
| Msa0879030 | AT5G67170.1 | 30.137 | 146 | 88 | 3 | 77 | 219 | 24 | 158 | 2.39e-12 | 66.2 |
Find 83 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAAGTGTGGTTGAGCTTC+TGG | 0.259325 | 6_1:-20576462 | Msa0879030:CDS |
| CTTTGTGAAGTTAGAGTATC+TGG | 0.260470 | 6_1:-20578005 | Msa0879030:CDS |
| TGCAATTGTTGTAGGGTTAT+TGG | 0.280794 | 6_1:-20579836 | Msa0879030:intron |
| ACCAACTGCTCCATCTAAAT+TGG | 0.295926 | 6_1:+20579628 | None:intergenic |
| CTCCTTGGTTTGTGCTGGAT+TGG | 0.304888 | 6_1:+20576315 | None:intergenic |
| ATGGAAGACAGACTCAAAAT+TGG | 0.312696 | 6_1:-20579745 | Msa0879030:CDS |
| ATAGTTTCAAGTTTCAATTC+TGG | 0.314289 | 6_1:+20576167 | None:intergenic |
| CTACTTCATCTTTGATACTT+TGG | 0.328277 | 6_1:+20576139 | None:intergenic |
| TTCGAACTTGGCACCTGTTC+CGG | 0.338179 | 6_1:-20579597 | Msa0879030:intron |
| GTTTCCTCCTTGGTTTGTGC+TGG | 0.339042 | 6_1:+20576310 | None:intergenic |
| CGAACATGCTTGTGGTGTTC+AGG | 0.343767 | 6_1:+20577847 | None:intergenic |
| AAGTAGGTTGTAGATATATT+AGG | 0.349984 | 6_1:-20576122 | Msa0879030:three_prime_UTR |
| TAATATCGTTTGTACTTCAT+TGG | 0.355923 | 6_1:+20577346 | None:intergenic |
| CACTATAAATGACGCCAGTA+TGG | 0.372664 | 6_1:-20578992 | Msa0879030:CDS |
| GGGTGACCATGTTACCTTAC+AGG | 0.378745 | 6_1:-20577177 | Msa0879030:CDS |
| TGGAAGACAGACTCAAAATT+GGG | 0.391954 | 6_1:-20579744 | Msa0879030:CDS |
| GTGTTGGGATTTAGAATGAA+TGG | 0.391999 | 6_1:+20580692 | None:intergenic |
| GAAGAGTATGCCAATTTAGA+TGG | 0.397908 | 6_1:-20579638 | Msa0879030:CDS |
| CTTACAGGCAGCTTCTGATA+AGG | 0.408830 | 6_1:-20577162 | Msa0879030:CDS |
| TCGTAAAGATATTGTAAAAC+AGG | 0.423090 | 6_1:-20577827 | Msa0879030:intron |
| GCAGGGATTCCTACCGGAAC+AGG | 0.425396 | 6_1:+20579584 | None:intergenic |
| CATACTGGCGTCATTTATAG+TGG | 0.427137 | 6_1:+20578993 | None:intergenic |
| AACAACCAATGTTTCCTCCT+TGG | 0.432342 | 6_1:+20576300 | None:intergenic |
| CTTATCAGAAGCTGCCTGTA+AGG | 0.433796 | 6_1:+20577163 | None:intergenic |
| TGTTGTAGGGTTATTGGCTG+TGG | 0.439555 | 6_1:-20579830 | Msa0879030:intron |
| TATAATGTAAATAATAGTAA+AGG | 0.440863 | 6_1:+20576056 | None:intergenic |
| TGGTACATAGGATTCATATA+AGG | 0.449434 | 6_1:+20577366 | None:intergenic |
| TTTGTACTTCATTGGTACAT+AGG | 0.451108 | 6_1:+20577354 | None:intergenic |
| AACTCACTTTATGAAATTCG+AGG | 0.456383 | 6_1:-20576424 | Msa0879030:intron |
| ATAATGTAAATAATAGTAAA+GGG | 0.469665 | 6_1:+20576057 | None:intergenic |
| TGCTCTATTCAATATAAGAT+AGG | 0.470550 | 6_1:+20575994 | None:intergenic |
| CCTTGTGCAGATCTGGAGAA+TGG | 0.471939 | 6_1:-20577199 | Msa0879030:intron |
| ATCTGGAGATGGAAATTGTC+AGG | 0.472072 | 6_1:-20577988 | Msa0879030:intron |
| CACTTTCAGATCAGCTGTAC+CGG | 0.478852 | 6_1:-20577873 | Msa0879030:CDS |
| CAAAGTATCAAAGATGAAGT+AGG | 0.480335 | 6_1:-20576138 | Msa0879030:three_prime_UTR |
| AGAAGATGTAGTGTCGTGTA+TGG | 0.493008 | 6_1:-20576275 | Msa0879030:three_prime_UTR |
| AACCTGTGAGCGATTGTGTT+GGG | 0.500150 | 6_1:+20580677 | None:intergenic |
| CTTGTGCAGATCTGGAGAAT+GGG | 0.504959 | 6_1:-20577198 | Msa0879030:intron |
| TATTATTTACATTATACTCA+TGG | 0.510521 | 6_1:-20576049 | Msa0879030:three_prime_UTR |
| AACTTCGCTTAGTAGTCAGC+AGG | 0.513849 | 6_1:-20579699 | Msa0879030:CDS |
| TATTAGGAGCAAACCGGCGC+GGG | 0.513873 | 6_1:-20576106 | Msa0879030:three_prime_UTR |
| GTCATTTATAGTGGGGATGA+AGG | 0.516277 | 6_1:+20579002 | None:intergenic |
| ATTGGCTGTGGATTGTGTTG+AGG | 0.516663 | 6_1:-20579818 | Msa0879030:five_prime_UTR |
| GAAGAAGACACGGTAGTAGT+TGG | 0.517300 | 6_1:+20580837 | None:intergenic |
| GATGATTGCTCTTGTGCTAT+CGG | 0.520346 | 6_1:-20579660 | Msa0879030:CDS |
| TGTTGGGATTTAGAATGAAT+GGG | 0.531457 | 6_1:+20580693 | None:intergenic |
| TAGATATATTAGGAGCAAAC+CGG | 0.531781 | 6_1:-20576112 | Msa0879030:three_prime_UTR |
| CAAACGATATTACAAGAGAA+TGG | 0.535116 | 6_1:-20577335 | Msa0879030:CDS |
| CAGACGCTGATGATCCATAC+TGG | 0.538309 | 6_1:+20578978 | None:intergenic |
| GCCAATTTAGATGGAGCAGT+TGG | 0.540811 | 6_1:-20579629 | Msa0879030:CDS |
| GGGGATGAAGGTATTTATGC+GGG | 0.542802 | 6_1:+20579014 | None:intergenic |
| ATCATCAGCGTCTGCTACAG+AGG | 0.553379 | 6_1:-20578969 | Msa0879030:intron |
| CGCTGCGGTGCTTGGTACAG+TGG | 0.555933 | 6_1:+20576893 | None:intergenic |
| ATACTGGCGTCATTTATAGT+GGG | 0.564488 | 6_1:+20578994 | None:intergenic |
| GCTTGTGGTGTTCAGGTGAC+CGG | 0.574916 | 6_1:+20577854 | None:intergenic |
| GAACAGGTGCCAAGTTCGAA+AGG | 0.581669 | 6_1:+20579600 | None:intergenic |
| ATCCCAACACAATCGCTCAC+AGG | 0.584837 | 6_1:-20580679 | Msa0879030:intron |
| GAAGTTAGAGTATCTGGAGA+TGG | 0.586909 | 6_1:-20577999 | Msa0879030:CDS |
| GTGGTTGAGCTTCTGGTCCG+AGG | 0.587217 | 6_1:-20576455 | Msa0879030:CDS |
| ACAAGTGATTTCTCCCGCGC+CGG | 0.587738 | 6_1:+20576093 | None:intergenic |
| ACAAACCAAGGAGGAAACAT+TGG | 0.595884 | 6_1:-20576305 | Msa0879030:CDS |
| ATTTAGATGGAGCAGTTGGT+CGG | 0.596467 | 6_1:-20579625 | Msa0879030:CDS |
| ATGAATGGGTGTGATGAAGA+AGG | 0.597213 | 6_1:+20580707 | None:intergenic |
| TATCTTTACGAACATGCTTG+TGG | 0.599180 | 6_1:+20577839 | None:intergenic |
| TATCTCTGAATGATGTCAGA+AGG | 0.609488 | 6_1:+20576936 | None:intergenic |
| AAGCTGCCTGTAAGGTAACA+TGG | 0.614667 | 6_1:+20577171 | None:intergenic |
| CACCAATCCAGCACAAACCA+AGG | 0.617742 | 6_1:-20576317 | Msa0879030:CDS |
| CATAGGATTCATATAAGGAA+CGG | 0.626211 | 6_1:+20577371 | None:intergenic |
| GTCGTGTATGGCTCATCGAA+TGG | 0.630803 | 6_1:-20576263 | Msa0879030:three_prime_UTR |
| AAGTGAGTTGTAATGAACCT+CGG | 0.634872 | 6_1:+20576438 | None:intergenic |
| TACTGGCGTCATTTATAGTG+GGG | 0.643650 | 6_1:+20578995 | None:intergenic |
| AAACCTGTGAGCGATTGTGT+TGG | 0.649827 | 6_1:+20580676 | None:intergenic |
| ACAGCTGATCTGAAAGTGCA+CGG | 0.650890 | 6_1:+20577878 | None:intergenic |
| GGAAGACAGACTCAAAATTG+GGG | 0.661464 | 6_1:-20579743 | Msa0879030:CDS |
| TGGGGATGAAGGTATTTATG+CGG | 0.664042 | 6_1:+20579013 | None:intergenic |
| TTCTTAATGATGCAGAAGTG+TGG | 0.666124 | 6_1:-20576474 | Msa0879030:intron |
| ATATTAGGAGCAAACCGGCG+CGG | 0.670908 | 6_1:-20576107 | Msa0879030:three_prime_UTR |
| AATGGGTGTGATGAAGAAGG+AGG | 0.677563 | 6_1:+20580710 | None:intergenic |
| TTGTGCAGATCTGGAGAATG+GGG | 0.683415 | 6_1:-20577197 | Msa0879030:intron |
| CAATCCAGCACAAACCAAGG+AGG | 0.692550 | 6_1:-20576314 | Msa0879030:CDS |
| AAGGTTGATGGAAGAAGACA+CGG | 0.696191 | 6_1:+20580827 | None:intergenic |
| CTGTACCAAGCACCGCAGCG+CGG | 0.717604 | 6_1:-20576890 | Msa0879030:intron |
| GGGATGAAGGTATTTATGCG+GGG | 0.722601 | 6_1:+20579015 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAATATGAAGAAA+GGG | + | chr6_1:20576119-20576138 | None:intergenic | 10.0% |
| !! | ATTAAAAAAAATATGAAGAA+AGG | + | chr6_1:20576120-20576139 | None:intergenic | 10.0% |
| !!! | TTTTTACAAGAAAAATATTT+TGG | - | chr6_1:20576493-20576512 | Msa0879030:intron | 10.0% |
| !!! | AGAAAATTTAAAACTATATT+AGG | + | chr6_1:20578835-20578854 | None:intergenic | 10.0% |
| !! | ATATAAATTAATACATTTCA+CGG | + | chr6_1:20578995-20579014 | None:intergenic | 10.0% |
| !! | AAATGTAAATAGTTAATAAT+TGG | + | chr6_1:20579662-20579681 | None:intergenic | 10.0% |
| !! | ATAATGTAAATAATAGTAAA+GGG | + | chr6_1:20580703-20580722 | None:intergenic | 10.0% |
| !! | TATAATGTAAATAATAGTAA+AGG | + | chr6_1:20580704-20580723 | None:intergenic | 10.0% |
| !!! | TAAAAGTAAAGTTTTCAATT+TGG | + | chr6_1:20575967-20575986 | None:intergenic | 15.0% |
| !! | TTTATAATCTTGAATTTGAA+GGG | - | chr6_1:20576384-20576403 | Msa0879030:intron | 15.0% |
| !!! | AAATTTTATTGTTAAACTGT+GGG | + | chr6_1:20577217-20577236 | None:intergenic | 15.0% |
| !! | TATAAATTAATACATTTCAC+GGG | + | chr6_1:20578994-20579013 | None:intergenic | 15.0% |
| !! | AGTTATATACTGTAATATTT+AGG | - | chr6_1:20579201-20579220 | Msa0879030:intron | 15.0% |
| !! | GTTATATACTGTAATATTTA+GGG | - | chr6_1:20579202-20579221 | Msa0879030:intron | 15.0% |
| !! | TACATTAAAAAATAAGAAAC+AGG | + | chr6_1:20579783-20579802 | None:intergenic | 15.0% |
| !! | TATTATTTACATTATACTCA+TGG | - | chr6_1:20580708-20580727 | Msa0879030:five_prime_UTR | 15.0% |
| !!! | ATCATTTTCTATCATTGATT+TGG | - | chr6_1:20576276-20576295 | Msa0879030:three_prime_UTR | 20.0% |
| !! | CTTTATAATCTTGAATTTGA+AGG | - | chr6_1:20576383-20576402 | Msa0879030:intron | 20.0% |
| !!! | GATTGTACTATTAGAATTTT+AGG | - | chr6_1:20576442-20576461 | Msa0879030:CDS | 20.0% |
| !!! | ACAAGAAAAATATTTTGGAT+TGG | - | chr6_1:20576498-20576517 | Msa0879030:intron | 20.0% |
| !!! | CAAGAAAAATATTTTGGATT+GGG | - | chr6_1:20576499-20576518 | Msa0879030:intron | 20.0% |
| !!! | CCATTTTCTGAAATTATTAA+CGG | - | chr6_1:20576618-20576637 | Msa0879030:intron | 20.0% |
| !!! | GAATTTTACGATTAATAATG+TGG | - | chr6_1:20576828-20576847 | Msa0879030:intron | 20.0% |
| !!! | CAAATTTTATTGTTAAACTG+TGG | + | chr6_1:20577218-20577237 | None:intergenic | 20.0% |
| !!! | AATTTTTATTTAGAATAGCG+AGG | + | chr6_1:20577392-20577411 | None:intergenic | 20.0% |
| !!! | TATGGAATTTTCAATATTTG+TGG | - | chr6_1:20577671-20577690 | Msa0879030:intron | 20.0% |
| !! | TACAACTATATCTACAATAA+TGG | + | chr6_1:20578281-20578300 | None:intergenic | 20.0% |
| !! | ATATTTAGGGAAGAAAAATA+CGG | - | chr6_1:20579215-20579234 | Msa0879030:intron | 20.0% |
| !!! | TATCCATTTTCAATATTCAA+CGG | + | chr6_1:20579314-20579333 | None:intergenic | 20.0% |
| !! | ATATATAATAGCTTAAGTGA+CGG | + | chr6_1:20579471-20579490 | None:intergenic | 20.0% |
| !! | AAGAAAATAAAAGGAAACAA+AGG | + | chr6_1:20580268-20580287 | None:intergenic | 20.0% |
| !! | TGCATCATTAAGAAAATAAA+AGG | + | chr6_1:20580277-20580296 | None:intergenic | 20.0% |
| !!! | AGTTTTCAATTTGGTGTTTT+TGG | + | chr6_1:20575958-20575977 | None:intergenic | 25.0% |
| ! | AAAAAATATGAAGAAAGGGA+AGG | + | chr6_1:20576115-20576134 | None:intergenic | 25.0% |
| ! | TTCAATGTAATCACATTTGT+CGG | + | chr6_1:20576593-20576612 | None:intergenic | 25.0% |
| ! | CCGTTAATAATTTCAGAAAA+TGG | + | chr6_1:20576621-20576640 | None:intergenic | 25.0% |
| ! | GTAAAATTCTAATAACCATG+AGG | + | chr6_1:20576817-20576836 | None:intergenic | 25.0% |
| ! | ATGAACAAAAAAGATCGAAT+CGG | + | chr6_1:20576891-20576910 | None:intergenic | 25.0% |
| ! | TATGTTTATGCAATTGTTGT+AGG | - | chr6_1:20576913-20576932 | Msa0879030:CDS | 25.0% |
| ! | ATGTTTATGCAATTGTTGTA+GGG | - | chr6_1:20576914-20576933 | Msa0879030:CDS | 25.0% |
| !! | TCGAAGTTTCAAAAAGTTTT+CGG | - | chr6_1:20576974-20576993 | Msa0879030:intron | 25.0% |
| !! | TTTCAAAAAGTTTTCGGTTT+TGG | - | chr6_1:20576980-20576999 | Msa0879030:intron | 25.0% |
| !! | AATTTTGCAACAAGATTAGT+TGG | - | chr6_1:20577413-20577432 | Msa0879030:intron | 25.0% |
| !!! | GTAATATGTGCTATTTGAAA+TGG | + | chr6_1:20577996-20578015 | None:intergenic | 25.0% |
| !!! | ATTACCAGTGTTGTTAATTT+TGG | - | chr6_1:20578011-20578030 | Msa0879030:CDS | 25.0% |
| !!! | TTACCAGTGTTGTTAATTTT+GGG | - | chr6_1:20578012-20578031 | Msa0879030:CDS | 25.0% |
| ! | GTACAAATTATTCTGAATAG+AGG | - | chr6_1:20578098-20578117 | Msa0879030:intron | 25.0% |
| !! | TGTAGATATAGTTGTACTTT+TGG | - | chr6_1:20578285-20578304 | Msa0879030:intron | 25.0% |
| !! | GTAGATATAGTTGTACTTTT+GGG | - | chr6_1:20578286-20578305 | Msa0879030:intron | 25.0% |
| !! | ATGGTTAACGAAGTATTATA+TGG | - | chr6_1:20578452-20578471 | Msa0879030:intron | 25.0% |
| !! | TGGTTAACGAAGTATTATAT+GGG | - | chr6_1:20578453-20578472 | Msa0879030:intron | 25.0% |
| ! | AAGAATTTCAGTAACTTATC+CGG | + | chr6_1:20578505-20578524 | None:intergenic | 25.0% |
| ! | ATAAGTTACTGAAATTCTTC+TGG | - | chr6_1:20578506-20578525 | Msa0879030:intron | 25.0% |
| ! | TGGATTATTTAATGATGTAG+TGG | - | chr6_1:20578543-20578562 | Msa0879030:intron | 25.0% |
| !!! | CCTCGTTATTTTAAAAATCT+AGG | + | chr6_1:20578624-20578643 | None:intergenic | 25.0% |
| !!! | CCTAGATTTTTAAAATAACG+AGG | - | chr6_1:20578621-20578640 | Msa0879030:intron | 25.0% |
| ! | CTAAAAGAGTGAAGATAAAA+TGG | + | chr6_1:20578716-20578735 | None:intergenic | 25.0% |
| !! | CATTTTATCTTCACTCTTTT+AGG | - | chr6_1:20578714-20578733 | Msa0879030:intron | 25.0% |
| !! | TTTTATTGCAATTGTGTACA+AGG | - | chr6_1:20578797-20578816 | Msa0879030:intron | 25.0% |
| ! | TCGTAAAGATATTGTAAAAC+AGG | - | chr6_1:20578930-20578949 | Msa0879030:intron | 25.0% |
| !! | TTTATCTCCAATCTTTTCTT+TGG | + | chr6_1:20579050-20579069 | None:intergenic | 25.0% |
| ! | AACGATAAAGAACAAATTTC+AGG | + | chr6_1:20579099-20579118 | None:intergenic | 25.0% |
| !! | ATCCATTTTCAATATTCAAC+GGG | + | chr6_1:20579313-20579332 | None:intergenic | 25.0% |
| ! | TAATATCGTTTGTACTTCAT+TGG | + | chr6_1:20579414-20579433 | None:intergenic | 25.0% |
| !! | TTTTGAATCAGGTTTTTTGT+TGG | - | chr6_1:20579630-20579649 | Msa0879030:CDS | 25.0% |
| ! | GAATTCTCTTGACAAAATTA+AGG | - | chr6_1:20579690-20579709 | Msa0879030:CDS | 25.0% |
| ! | GTTATAACAAGATATAACAG+CGG | + | chr6_1:20579903-20579922 | None:intergenic | 25.0% |
| !! | ATGACTTTTACTCACAAATA+GGG | + | chr6_1:20580045-20580064 | None:intergenic | 25.0% |
| !! | AATGACTTTTACTCACAAAT+AGG | + | chr6_1:20580046-20580065 | None:intergenic | 25.0% |
| ! | TTTGTGAGTAAAAGTCATTT+CGG | - | chr6_1:20580047-20580066 | Msa0879030:intron | 25.0% |
| !!! | TTTTAGTTCTTAAATGTGTG+TGG | + | chr6_1:20580200-20580219 | None:intergenic | 25.0% |
| ! | AATATGCTTATGCTTAATAG+AGG | + | chr6_1:20580381-20580400 | None:intergenic | 25.0% |
| !!! | ATAGTTTCAAGTTTCAATTC+TGG | + | chr6_1:20580593-20580612 | None:intergenic | 25.0% |
| ! | AAGTAGGTTGTAGATATATT+AGG | - | chr6_1:20580635-20580654 | Msa0879030:intron | 25.0% |
| ! | TGCTCTATTCAATATAAGAT+AGG | + | chr6_1:20580766-20580785 | None:intergenic | 25.0% |
| !!! | TCACAAAGTAAGTTTTTTGA+AGG | + | chr6_1:20580818-20580837 | None:intergenic | 25.0% |
| !!! | CAATTTGGTGTTTTTGGTTA+AGG | + | chr6_1:20575952-20575971 | None:intergenic | 30.0% |
| ! | TGTTGGGATTTAGAATGAAT+GGG | + | chr6_1:20576067-20576086 | None:intergenic | 30.0% |
| AATTATTATCTCTGTAGCTC+CGG | - | chr6_1:20576523-20576542 | Msa0879030:intron | 30.0% | |
| AATATGAGACGGTTGTAAAA+TGG | + | chr6_1:20576735-20576754 | None:intergenic | 30.0% | |
| ! | ATTTTACAACCGTCTCATAT+TGG | - | chr6_1:20576734-20576753 | Msa0879030:intron | 30.0% |
| TGTTCAAATCCAATATGAGA+CGG | + | chr6_1:20576746-20576765 | None:intergenic | 30.0% | |
| GGAAAAACTTATCACTTGTT+AGG | - | chr6_1:20576849-20576868 | Msa0879030:intron | 30.0% | |
| !! | TTGTGTTGAGGTTTTTGTTT+AGG | - | chr6_1:20576951-20576970 | Msa0879030:CDS | 30.0% |
| ! | TTTTATTGTTAAACTGTGGG+TGG | + | chr6_1:20577214-20577233 | None:intergenic | 30.0% |
| ! | TCTTCTTTTTAAATCACTCG+CGG | - | chr6_1:20577280-20577299 | Msa0879030:intron | 30.0% |
| GTAGATTCTACATAACAGAA+TGG | + | chr6_1:20577818-20577837 | None:intergenic | 30.0% | |
| ! | AGAATCTACTATTTCTTGTG+AGG | - | chr6_1:20577829-20577848 | Msa0879030:CDS | 30.0% |
| ! | TAGCTGTATTTCTACCAAAA+GGG | + | chr6_1:20577886-20577905 | None:intergenic | 30.0% |
| !! | TACCAGTGTTGTTAATTTTG+GGG | - | chr6_1:20578013-20578032 | Msa0879030:CDS | 30.0% |
| ATATGCACTGTTATCAATTG+CGG | + | chr6_1:20578186-20578205 | None:intergenic | 30.0% | |
| TGATAACAGTGCATATAACT+TGG | - | chr6_1:20578190-20578209 | Msa0879030:intron | 30.0% | |
| TATGAAAATGACTTGAGGAT+AGG | - | chr6_1:20578220-20578239 | Msa0879030:intron | 30.0% | |
| ! | TTCTGGTTACAATAAGTACT+TGG | - | chr6_1:20578523-20578542 | Msa0879030:intron | 30.0% |
| ! | TAACTTTGAGTTACTTGCTT+AGG | + | chr6_1:20578586-20578605 | None:intergenic | 30.0% |
| AAGCAAGTAACTCAAAGTTA+AGG | - | chr6_1:20578586-20578605 | Msa0879030:intron | 30.0% | |
| !! | TTATCTTCACTCTTTTAGGT+TGG | - | chr6_1:20578718-20578737 | Msa0879030:intron | 30.0% |
| !!! | TCTTTTAGGTTGGATGTTTA+TGG | - | chr6_1:20578728-20578747 | Msa0879030:intron | 30.0% |
| GCATATTCCAAAGAAAAGAT+TGG | - | chr6_1:20579040-20579059 | Msa0879030:intron | 30.0% | |
| TTGTTCTTTATCGTTGATCA+AGG | - | chr6_1:20579104-20579123 | Msa0879030:intron | 30.0% | |
| CTAAGGTTACTATTTACTAC+AGG | + | chr6_1:20579133-20579152 | None:intergenic | 30.0% | |
| ! | TTTCAATTTTCTTCTCTAGC+AGG | + | chr6_1:20579167-20579186 | None:intergenic | 30.0% |
| ! | TCCATTTTCAATATTCAACG+GGG | + | chr6_1:20579312-20579331 | None:intergenic | 30.0% |
| CATAGGATTCATATAAGGAA+CGG | + | chr6_1:20579389-20579408 | None:intergenic | 30.0% | |
| TGGTACATAGGATTCATATA+AGG | + | chr6_1:20579394-20579413 | None:intergenic | 30.0% | |
| TTTGTACTTCATTGGTACAT+AGG | + | chr6_1:20579406-20579425 | None:intergenic | 30.0% | |
| CAAACGATATTACAAGAGAA+TGG | - | chr6_1:20579422-20579441 | Msa0879030:intron | 30.0% | |
| !!! | TCGTAATGTTGTTTTGAATC+AGG | - | chr6_1:20579619-20579638 | Msa0879030:CDS | 30.0% |
| TTTGTCAAGAGAATTCGAAA+AGG | + | chr6_1:20579686-20579705 | None:intergenic | 30.0% | |
| TAAATACGTCTTTCGTTAGT+CGG | + | chr6_1:20580130-20580149 | None:intergenic | 30.0% | |
| AACTCACTTTATGAAATTCG+AGG | - | chr6_1:20580333-20580352 | Msa0879030:intron | 30.0% | |
| CTACTTCATCTTTGATACTT+TGG | + | chr6_1:20580621-20580640 | None:intergenic | 30.0% | |
| ! | CAAAGTATCAAAGATGAAGT+AGG | - | chr6_1:20580619-20580638 | Msa0879030:intron | 30.0% |
| TAGATATATTAGGAGCAAAC+CGG | - | chr6_1:20580645-20580664 | Msa0879030:intron | 30.0% | |
| !!! | GTGTTTTTGGTTAAGGTTGA+TGG | + | chr6_1:20575945-20575964 | None:intergenic | 35.0% |
| ! | GTGTTGGGATTTAGAATGAA+TGG | + | chr6_1:20576068-20576087 | None:intergenic | 35.0% |
| TGCAATTGTTGTAGGGTTAT+TGG | - | chr6_1:20576921-20576940 | Msa0879030:CDS | 35.0% | |
| !!! | TCGGTTTTGGATATGATGAA+TGG | - | chr6_1:20576993-20577012 | Msa0879030:intron | 35.0% |
| ATGGAAGACAGACTCAAAAT+TGG | - | chr6_1:20577012-20577031 | Msa0879030:intron | 35.0% | |
| TGGAAGACAGACTCAAAATT+GGG | - | chr6_1:20577013-20577032 | Msa0879030:intron | 35.0% | |
| ! | GAAGAGTATGCCAATTTAGA+TGG | - | chr6_1:20577119-20577138 | Msa0879030:intron | 35.0% |
| ! | TTATTTAGAATAGCGAGGCA+AGG | + | chr6_1:20577387-20577406 | None:intergenic | 35.0% |
| ATTCCTATGTAAGATCACTC+GGG | + | chr6_1:20577457-20577476 | None:intergenic | 35.0% | |
| GATTCCTATGTAAGATCACT+CGG | + | chr6_1:20577458-20577477 | None:intergenic | 35.0% | |
| TCTTAAGATCGGTTAATGGT+GGG | + | chr6_1:20577547-20577566 | None:intergenic | 35.0% | |
| ACCATTAACCGATCTTAAGA+GGG | - | chr6_1:20577547-20577566 | Msa0879030:intron | 35.0% | |
| ATACTGGCGTCATTTATAGT+GGG | + | chr6_1:20577766-20577785 | None:intergenic | 35.0% | |
| ! | GTAGCTGTATTTCTACCAAA+AGG | + | chr6_1:20577887-20577906 | None:intergenic | 35.0% |
| GCTACTAATAGTAATGACCA+CGG | - | chr6_1:20577902-20577921 | Msa0879030:intron | 35.0% | |
| CTACTAATAGTAATGACCAC+GGG | - | chr6_1:20577903-20577922 | Msa0879030:intron | 35.0% | |
| ATTCTGAATAGAGGCTATAG+CGG | - | chr6_1:20578107-20578126 | Msa0879030:intron | 35.0% | |
| ACTGTTATCAATTGCGGATT+GGG | + | chr6_1:20578180-20578199 | None:intergenic | 35.0% | |
| CTTCGTATGAAAATGACTTG+AGG | - | chr6_1:20578215-20578234 | Msa0879030:intron | 35.0% | |
| CACATAATTCCTTCTAGTGT+AGG | - | chr6_1:20578243-20578262 | Msa0879030:intron | 35.0% | |
| AAACTCTTTCCTACACTAGA+AGG | + | chr6_1:20578255-20578274 | None:intergenic | 35.0% | |
| TTCTAGTGTAGGAAAGAGTT+TGG | - | chr6_1:20578254-20578273 | Msa0879030:intron | 35.0% | |
| TCTAGTGTAGGAAAGAGTTT+GGG | - | chr6_1:20578255-20578274 | Msa0879030:intron | 35.0% | |
| !! | ATAGTTGTACTTTTGGGAGA+CGG | - | chr6_1:20578292-20578311 | Msa0879030:intron | 35.0% |
| ! | GTTCTCGTCGAAAGTTTTTA+TGG | + | chr6_1:20578356-20578375 | None:intergenic | 35.0% |
| CTCAAGGAATAAGCAAAGAT+AGG | - | chr6_1:20578398-20578417 | Msa0879030:intron | 35.0% | |
| TAACTTATCCGGATACAGAA+AGG | + | chr6_1:20578494-20578513 | None:intergenic | 35.0% | |
| TCATATAACTACTCTTGCTG+TGG | - | chr6_1:20578665-20578684 | Msa0879030:intron | 35.0% | |
| GCTGTGGATTTACTCTTTAT+CGG | - | chr6_1:20578681-20578700 | Msa0879030:intron | 35.0% | |
| ! | CTTTGTGAAGTTAGAGTATC+TGG | - | chr6_1:20578752-20578771 | Msa0879030:intron | 35.0% |
| TATCTTTACGAACATGCTTG+TGG | + | chr6_1:20578921-20578940 | None:intergenic | 35.0% | |
| TACGGTGTTTAAATCATGTG+TGG | - | chr6_1:20579233-20579252 | Msa0879030:intron | 35.0% | |
| ACGGTGTTTAAATCATGTGT+GGG | - | chr6_1:20579234-20579253 | Msa0879030:intron | 35.0% | |
| TTTAAATCATGTGTGGGATG+TGG | - | chr6_1:20579240-20579259 | Msa0879030:intron | 35.0% | |
| AACTCTTTGTACAAGAAGAG+TGG | - | chr6_1:20579266-20579285 | Msa0879030:intron | 35.0% | |
| ACCCCGTTGAATATTGAAAA+TGG | - | chr6_1:20579308-20579327 | Msa0879030:intron | 35.0% | |
| !! | AAAGGTATCGAAAAATGCGA+TGG | + | chr6_1:20579502-20579521 | None:intergenic | 35.0% |
| CTTGATGCAAATGCTTCTAA+AGG | + | chr6_1:20579520-20579539 | None:intergenic | 35.0% | |
| TATCTCTGAATGATGTCAGA+AGG | + | chr6_1:20579824-20579843 | None:intergenic | 35.0% | |
| ATTTGCCCCAAAAGTCATTT+CGG | - | chr6_1:20579960-20579979 | Msa0879030:intron | 35.0% | |
| TTTCGGTCTCTAATTGTATG+TGG | - | chr6_1:20580064-20580083 | Msa0879030:intron | 35.0% | |
| TTCTTAATGATGCAGAAGTG+TGG | - | chr6_1:20580283-20580302 | Msa0879030:intron | 35.0% | |
| AAGTGAGTTGTAATGAACCT+CGG | + | chr6_1:20580322-20580341 | None:intergenic | 35.0% | |
| !! | TAATAGAGGATCGGTTTTAG+TGG | + | chr6_1:20580367-20580386 | None:intergenic | 35.0% |
| GCTTATGCTTAATAGAGGAT+CGG | + | chr6_1:20580376-20580395 | None:intergenic | 35.0% | |
| !! | AAGGTTGATGGAAGAAGACA+CGG | + | chr6_1:20575933-20575952 | None:intergenic | 40.0% |
| ATGAATGGGTGTGATGAAGA+AGG | + | chr6_1:20576053-20576072 | None:intergenic | 40.0% | |
| GATTTGAACAATGTCCGTTG+AGG | - | chr6_1:20576756-20576775 | Msa0879030:intron | 40.0% | |
| ! | GTTTGACTTTGTCACCTCAA+CGG | + | chr6_1:20576773-20576792 | None:intergenic | 40.0% |
| GGAAGACAGACTCAAAATTG+GGG | - | chr6_1:20577014-20577033 | Msa0879030:intron | 40.0% | |
| GATGATTGCTCTTGTGCTAT+CGG | - | chr6_1:20577097-20577116 | Msa0879030:intron | 40.0% | |
| ACCAACTGCTCCATCTAAAT+TGG | + | chr6_1:20577132-20577151 | None:intergenic | 40.0% | |
| ATTTAGATGGAGCAGTTGGT+CGG | - | chr6_1:20577132-20577151 | Msa0879030:intron | 40.0% | |
| GGAGCATAACAGAAAAAGCA+GGG | + | chr6_1:20577193-20577212 | None:intergenic | 40.0% | |
| TGGAGCATAACAGAAAAAGC+AGG | + | chr6_1:20577194-20577213 | None:intergenic | 40.0% | |
| ATGTGCTTTAACCCGATAGT+AGG | - | chr6_1:20577498-20577517 | Msa0879030:intron | 40.0% | |
| TGTGCTTTAACCCGATAGTA+GGG | - | chr6_1:20577499-20577518 | Msa0879030:intron | 40.0% | |
| TGTATGGTCATCCCTACTAT+CGG | + | chr6_1:20577513-20577532 | None:intergenic | 40.0% | |
| CTTAAGATCGGTTAATGGTG+GGG | + | chr6_1:20577546-20577565 | None:intergenic | 40.0% | |
| CTCTTAAGATCGGTTAATGG+TGG | + | chr6_1:20577548-20577567 | None:intergenic | 40.0% | |
| CACCATTAACCGATCTTAAG+AGG | - | chr6_1:20577546-20577565 | Msa0879030:intron | 40.0% | |
| TGCGAGTATTCACCCAAAAA+GGG | + | chr6_1:20577619-20577638 | None:intergenic | 40.0% | |
| !! | GCACATCCCTTTTCTGAAAA+GGG | - | chr6_1:20577636-20577655 | Msa0879030:intron | 40.0% |
| !! | CACATCCCTTTTCTGAAAAG+GGG | - | chr6_1:20577637-20577656 | Msa0879030:intron | 40.0% |
| !! | TGGGGATGAAGGTATTTATG+CGG | + | chr6_1:20577747-20577766 | None:intergenic | 40.0% |
| ! | GTCATTTATAGTGGGGATGA+AGG | + | chr6_1:20577758-20577777 | None:intergenic | 40.0% |
| TACTGGCGTCATTTATAGTG+GGG | + | chr6_1:20577765-20577784 | None:intergenic | 40.0% | |
| CATACTGGCGTCATTTATAG+TGG | + | chr6_1:20577767-20577786 | None:intergenic | 40.0% | |
| CACTATAAATGACGCCAGTA+TGG | - | chr6_1:20577765-20577784 | Msa0879030:intron | 40.0% | |
| ! | AGTTATCGTCTATGCCCTTT+TGG | - | chr6_1:20577869-20577888 | Msa0879030:CDS | 40.0% |
| AGCCCCAAAATTAACAACAC+TGG | + | chr6_1:20578018-20578037 | None:intergenic | 40.0% | |
| GCTATAGCACTGTTCTATAG+CGG | - | chr6_1:20578131-20578150 | Msa0879030:intron | 40.0% | |
| ! | CTGTTATCAATTGCGGATTG+GGG | + | chr6_1:20578179-20578198 | None:intergenic | 40.0% |
| CACTGTTATCAATTGCGGAT+TGG | + | chr6_1:20578181-20578200 | None:intergenic | 40.0% | |
| CATTTCTCTTACGACTTGTG+AGG | + | chr6_1:20578435-20578454 | None:intergenic | 40.0% | |
| CTCACAAGTCGTAAGAGAAA+TGG | - | chr6_1:20578433-20578452 | Msa0879030:intron | 40.0% | |
| ! | GAAGTTAGAGTATCTGGAGA+TGG | - | chr6_1:20578758-20578777 | Msa0879030:intron | 40.0% |
| ATCTGGAGATGGAAATTGTC+AGG | - | chr6_1:20578769-20578788 | Msa0879030:intron | 40.0% | |
| CAGGTAAGTTGTGCTTATCT+TGG | - | chr6_1:20578949-20578968 | Msa0879030:intron | 40.0% | |
| CTTATCTTGGTTGTGTGCAA+TGG | - | chr6_1:20578962-20578981 | Msa0879030:intron | 40.0% | |
| AACAAGATATAACAGCGGTG+AGG | + | chr6_1:20579898-20579917 | None:intergenic | 40.0% | |
| AGCAACAGTTCATTCGATGA+GGG | + | chr6_1:20579987-20580006 | None:intergenic | 40.0% | |
| ACAAACCAAGGAGGAAACAT+TGG | - | chr6_1:20580452-20580471 | Msa0879030:intron | 40.0% | |
| AACAACCAATGTTTCCTCCT+TGG | + | chr6_1:20580460-20580479 | None:intergenic | 40.0% | |
| AGAAGATGTAGTGTCGTGTA+TGG | - | chr6_1:20580482-20580501 | Msa0879030:intron | 40.0% | |
| GAAGAAGACACGGTAGTAGT+TGG | + | chr6_1:20575923-20575942 | None:intergenic | 45.0% | |
| AATGGGTGTGATGAAGAAGG+AGG | + | chr6_1:20576050-20576069 | None:intergenic | 45.0% | |
| AACCTGTGAGCGATTGTGTT+GGG | + | chr6_1:20576083-20576102 | None:intergenic | 45.0% | |
| AAACCTGTGAGCGATTGTGT+TGG | + | chr6_1:20576084-20576103 | None:intergenic | 45.0% | |
| AAACTACGAAGCACGTGCAT+TGG | + | chr6_1:20576683-20576702 | None:intergenic | 45.0% | |
| ! | TGTTGTAGGGTTATTGGCTG+TGG | - | chr6_1:20576927-20576946 | Msa0879030:CDS | 45.0% |
| ! | ATTGGCTGTGGATTGTGTTG+AGG | - | chr6_1:20576939-20576958 | Msa0879030:CDS | 45.0% |
| AACTTCGCTTAGTAGTCAGC+AGG | - | chr6_1:20577058-20577077 | Msa0879030:intron | 45.0% | |
| GCCAATTTAGATGGAGCAGT+TGG | - | chr6_1:20577128-20577147 | Msa0879030:intron | 45.0% | |
| GAAAAAGCAGGGATTCCTAC+CGG | + | chr6_1:20577182-20577201 | None:intergenic | 45.0% | |
| TAGCCCGAGTGATCTTACAT+AGG | - | chr6_1:20577451-20577470 | Msa0879030:intron | 45.0% | |
| GTATGGTCATCCCTACTATC+GGG | + | chr6_1:20577512-20577531 | None:intergenic | 45.0% | |
| GCCCTCTTAAGATCGGTTAA+TGG | + | chr6_1:20577551-20577570 | None:intergenic | 45.0% | |
| TGCTAGCCAACTCTAGCAAT+AGG | - | chr6_1:20577574-20577593 | Msa0879030:intron | 45.0% | |
| GCTAGCCAACTCTAGCAATA+GGG | - | chr6_1:20577575-20577594 | Msa0879030:intron | 45.0% | |
| CTCAACCCTATTGCTAGAGT+TGG | + | chr6_1:20577583-20577602 | None:intergenic | 45.0% | |
| TATTCACCCAAAAAGGGGCA+GGG | + | chr6_1:20577613-20577632 | None:intergenic | 45.0% | |
| GCGAGTATTCACCCAAAAAG+GGG | + | chr6_1:20577618-20577637 | None:intergenic | 45.0% | |
| GTGCGAGTATTCACCCAAAA+AGG | + | chr6_1:20577620-20577639 | None:intergenic | 45.0% | |
| !! | CGCACATCCCTTTTCTGAAA+AGG | - | chr6_1:20577635-20577654 | Msa0879030:intron | 45.0% |
| !! | ATCCCTTTTCTGAAAAGGGG+TGG | - | chr6_1:20577640-20577659 | Msa0879030:intron | 45.0% |
| !! | TCCCTTTTCTGAAAAGGGGT+GGG | - | chr6_1:20577641-20577660 | Msa0879030:intron | 45.0% |
| ! | TCCCACCCCTTTTCAGAAAA+GGG | + | chr6_1:20577645-20577664 | None:intergenic | 45.0% |
| !! | GGGATGAAGGTATTTATGCG+GGG | + | chr6_1:20577745-20577764 | None:intergenic | 45.0% |
| !! | GGGGATGAAGGTATTTATGC+GGG | + | chr6_1:20577746-20577765 | None:intergenic | 45.0% |
| GGGCATAGACGATAACTTCA+AGG | + | chr6_1:20577866-20577885 | None:intergenic | 45.0% | |
| AAGTGCATCATTTCTTCCCG+TGG | + | chr6_1:20577922-20577941 | None:intergenic | 45.0% | |
| !! | TTGCGGATTGGGGAAAATAG+CGG | + | chr6_1:20578169-20578188 | None:intergenic | 45.0% |
| TTTCGACGAGAACAGCATAC+TGG | - | chr6_1:20578363-20578382 | Msa0879030:intron | 45.0% | |
| CTGGCATTCTTCAAAGCTCA+AGG | - | chr6_1:20578382-20578401 | Msa0879030:intron | 45.0% | |
| AACAGCGACCTTTCTGTATC+CGG | - | chr6_1:20578483-20578502 | Msa0879030:intron | 45.0% | |
| ! | ACAGCTGATCTGAAAGTGCA+CGG | + | chr6_1:20578882-20578901 | None:intergenic | 45.0% |
| CACTTTCAGATCAGCTGTAC+CGG | - | chr6_1:20578884-20578903 | Msa0879030:intron | 45.0% | |
| AGGAACGGTGATCTTTAAGC+TGG | + | chr6_1:20579374-20579393 | None:intergenic | 45.0% | |
| CTTGTGCAGATCTGGAGAAT+GGG | - | chr6_1:20579559-20579578 | Msa0879030:intron | 45.0% | |
| TTGTGCAGATCTGGAGAATG+GGG | - | chr6_1:20579560-20579579 | Msa0879030:intron | 45.0% | |
| AAGCTGCCTGTAAGGTAACA+TGG | + | chr6_1:20579589-20579608 | None:intergenic | 45.0% | |
| CTTATCAGAAGCTGCCTGTA+AGG | + | chr6_1:20579597-20579616 | None:intergenic | 45.0% | |
| CTTACAGGCAGCTTCTGATA+AGG | - | chr6_1:20579595-20579614 | Msa0879030:intron | 45.0% | |
| GCAACAGTTCATTCGATGAG+GGG | + | chr6_1:20579986-20580005 | None:intergenic | 45.0% | |
| CAGCAACAGTTCATTCGATG+AGG | + | chr6_1:20579988-20580007 | None:intergenic | 45.0% | |
| !! | TAAAAAATAAAAAAAATGAT+GGG | + | chr6_1:20576206-20576225 | None:intergenic | 5.0% |
| !! | ATAAAAAATAAAAAAAATGA+TGG | + | chr6_1:20576207-20576226 | None:intergenic | 5.0% |
| !! | TAGTTTATTATTATTAATAA+CGG | - | chr6_1:20576697-20576716 | Msa0879030:intron | 5.0% |
| ATCCCAACACAATCGCTCAC+AGG | - | chr6_1:20576078-20576097 | Msa0879030:three_prime_UTR | 50.0% | |
| TCTGACATGCTCACACACGT+TGG | + | chr6_1:20576568-20576587 | None:intergenic | 50.0% | |
| TACTGAGCTGACACACCTCA+TGG | - | chr6_1:20576799-20576818 | Msa0879030:intron | 50.0% | |
| GAACAGGTGCCAAGTTCGAA+AGG | + | chr6_1:20577160-20577179 | None:intergenic | 50.0% | |
| TTCGAACTTGGCACCTGTTC+CGG | - | chr6_1:20577160-20577179 | Msa0879030:CDS | 50.0% | |
| TGCGCTTTCATGTAAGCTCG+TGG | - | chr6_1:20577348-20577367 | Msa0879030:CDS | 50.0% | |
| GATCACTCGGGCTAAAAGTG+CGG | + | chr6_1:20577445-20577464 | None:intergenic | 50.0% | |
| ! | AAGATCGGTTAATGGTGGGG+CGG | + | chr6_1:20577543-20577562 | None:intergenic | 50.0% |
| !! | AGCACTGGCCCTCTTAAGAT+CGG | + | chr6_1:20577558-20577577 | None:intergenic | 50.0% |
| TTGCTAGAGTTGGCTAGCAC+TGG | + | chr6_1:20577573-20577592 | None:intergenic | 50.0% | |
| ! | AATCTCACCCTGCCCCTTTT+TGG | - | chr6_1:20577603-20577622 | Msa0879030:intron | 50.0% |
| ! | ATCTCACCCTGCCCCTTTTT+GGG | - | chr6_1:20577604-20577623 | Msa0879030:intron | 50.0% |
| GTATTCACCCAAAAAGGGGC+AGG | + | chr6_1:20577614-20577633 | None:intergenic | 50.0% | |
| ! | CTCCCACCCCTTTTCAGAAA+AGG | + | chr6_1:20577646-20577665 | None:intergenic | 50.0% |
| !! | CTTTTCTGAAAAGGGGTGGG+AGG | - | chr6_1:20577644-20577663 | Msa0879030:intron | 50.0% |
| ! | AAAGGGGTGGGAGGAGTATA+TGG | - | chr6_1:20577653-20577672 | Msa0879030:intron | 50.0% |
| CAGACGCTGATGATCCATAC+TGG | + | chr6_1:20577782-20577801 | None:intergenic | 50.0% | |
| ATCATCAGCGTCTGCTACAG+AGG | - | chr6_1:20577788-20577807 | Msa0879030:intron | 50.0% | |
| ! | GAAAGTGCACGGAACTGCAA+CGG | + | chr6_1:20578871-20578890 | None:intergenic | 50.0% |
| CGAACATGCTTGTGGTGTTC+AGG | + | chr6_1:20578913-20578932 | None:intergenic | 50.0% | |
| AGCAGGACGTCTTTGCTCTA+AGG | + | chr6_1:20579150-20579169 | None:intergenic | 50.0% | |
| TCTGCACAAGGTCGAAGAGA+AGG | + | chr6_1:20579549-20579568 | None:intergenic | 50.0% | |
| TCTTCGACCTTGTGCAGATC+TGG | - | chr6_1:20579551-20579570 | Msa0879030:intron | 50.0% | |
| CCATTCTCCAGATCTGCACA+AGG | + | chr6_1:20579561-20579580 | None:intergenic | 50.0% | |
| CCTTGTGCAGATCTGGAGAA+TGG | - | chr6_1:20579558-20579577 | Msa0879030:intron | 50.0% | |
| GGGTGACCATGTTACCTTAC+AGG | - | chr6_1:20579580-20579599 | Msa0879030:intron | 50.0% | |
| ! | AGGGGCCGAAATGACTTTTG+GGG | + | chr6_1:20579968-20579987 | None:intergenic | 50.0% |
| ! | GAGGGGCCGAAATGACTTTT+GGG | + | chr6_1:20579969-20579988 | None:intergenic | 50.0% |
| ! | TGAGGGGCCGAAATGACTTT+TGG | + | chr6_1:20579970-20579989 | None:intergenic | 50.0% |
| ! | CAGAAGTGTGGTTGAGCTTC+TGG | - | chr6_1:20580295-20580314 | Msa0879030:intron | 50.0% |
| CACCAATCCAGCACAAACCA+AGG | - | chr6_1:20580440-20580459 | Msa0879030:intron | 50.0% | |
| !! | CTCCTTGGTTTGTGCTGGAT+TGG | + | chr6_1:20580445-20580464 | None:intergenic | 50.0% |
| CAATCCAGCACAAACCAAGG+AGG | - | chr6_1:20580443-20580462 | Msa0879030:intron | 50.0% | |
| !! | GTTTCCTCCTTGGTTTGTGC+TGG | + | chr6_1:20580450-20580469 | None:intergenic | 50.0% |
| GTCGTGTATGGCTCATCGAA+TGG | - | chr6_1:20580494-20580513 | Msa0879030:intron | 50.0% | |
| ATATTAGGAGCAAACCGGCG+CGG | - | chr6_1:20580650-20580669 | Msa0879030:intron | 50.0% | |
| AACTTGGCACCTGTTCCGGT+AGG | - | chr6_1:20577164-20577183 | Msa0879030:CDS | 55.0% | |
| GTGGGGCGGGATAAACTGTA+TGG | + | chr6_1:20577529-20577548 | None:intergenic | 55.0% | |
| ! | AGATCGGTTAATGGTGGGGC+GGG | + | chr6_1:20577542-20577561 | None:intergenic | 55.0% |
| TTTGGGAGACGGTGCAGTTG+AGG | - | chr6_1:20578303-20578322 | Msa0879030:intron | 55.0% | |
| GCTTGTGGTGTTCAGGTGAC+CGG | + | chr6_1:20578906-20578925 | None:intergenic | 55.0% | |
| TATTAGGAGCAAACCGGCGC+GGG | - | chr6_1:20580651-20580670 | Msa0879030:intron | 55.0% | |
| ACAAGTGATTTCTCCCGCGC+CGG | + | chr6_1:20580667-20580686 | None:intergenic | 55.0% | |
| ACACCAGACACACGATGCGC+CGG | + | chr6_1:20576545-20576564 | None:intergenic | 60.0% | |
| TGGTCGGCGCCTTTCGAACT+TGG | - | chr6_1:20577148-20577167 | Msa0879030:CDS | 60.0% | |
| GCAGGGATTCCTACCGGAAC+AGG | + | chr6_1:20577176-20577195 | None:intergenic | 60.0% | |
| GTGGTTGAGCTTCTGGTCCG+AGG | - | chr6_1:20580302-20580321 | Msa0879030:intron | 60.0% | |
| CGCTGCGGTGCTTGGTACAG+TGG | + | chr6_1:20579867-20579886 | None:intergenic | 65.0% | |
| ! | CTGTACCAAGCACCGCAGCG+CGG | - | chr6_1:20579867-20579886 | Msa0879030:intron | 65.0% |
| TCTTACCGCGCTGCGGTGCT+TGG | + | chr6_1:20579875-20579894 | None:intergenic | 65.0% | |
| GGTGAGGTCTTACCGCGCTG+CGG | + | chr6_1:20579882-20579901 | None:intergenic | 65.0% | |
| GCTCCGGCGCATCGTGTGTC+TGG | - | chr6_1:20576539-20576558 | Msa0879030:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 20575913 | 20580866 | 20575913 | ID=Msa0879030;Name=Msa0879030 |
| chr6_1 | mRNA | 20575913 | 20580866 | 20575913 | ID=Msa0879030-mRNA-1;Parent=Msa0879030;Name=Msa0879030-mRNA-1;_AED=0.14;_eAED=0.14;_QI=257|0.88|0.9|1|0.88|0.8|10|383|238 |
| chr6_1 | exon | 20575913 | 20576342 | 20575913 | ID=Msa0879030-mRNA-1:exon:5589;Parent=Msa0879030-mRNA-1 |
| chr6_1 | exon | 20576425 | 20576481 | 20576425 | ID=Msa0879030-mRNA-1:exon:5588;Parent=Msa0879030-mRNA-1 |
| chr6_1 | exon | 20576891 | 20576975 | 20576891 | ID=Msa0879030-mRNA-1:exon:5587;Parent=Msa0879030-mRNA-1 |
| chr6_1 | exon | 20577139 | 20577211 | 20577139 | ID=Msa0879030-mRNA-1:exon:5586;Parent=Msa0879030-mRNA-1 |
| chr6_1 | exon | 20577331 | 20577404 | 20577331 | ID=Msa0879030-mRNA-1:exon:5585;Parent=Msa0879030-mRNA-1 |
| chr6_1 | exon | 20577828 | 20577902 | 20577828 | ID=Msa0879030-mRNA-1:exon:5584;Parent=Msa0879030-mRNA-1 |
| chr6_1 | exon | 20577989 | 20578043 | 20577989 | ID=Msa0879030-mRNA-1:exon:5583;Parent=Msa0879030-mRNA-1 |
| chr6_1 | exon | 20578970 | 20579043 | 20578970 | ID=Msa0879030-mRNA-1:exon:5582;Parent=Msa0879030-mRNA-1 |
| chr6_1 | exon | 20579598 | 20579844 | 20579598 | ID=Msa0879030-mRNA-1:exon:5581;Parent=Msa0879030-mRNA-1 |
| chr6_1 | exon | 20580680 | 20580866 | 20580680 | ID=Msa0879030-mRNA-1:exon:5580;Parent=Msa0879030-mRNA-1 |
| chr6_1 | five_prime_UTR | 20580680 | 20580866 | 20580680 | ID=Msa0879030-mRNA-1:five_prime_utr;Parent=Msa0879030-mRNA-1 |
| chr6_1 | five_prime_UTR | 20579775 | 20579844 | 20579775 | ID=Msa0879030-mRNA-1:five_prime_utr;Parent=Msa0879030-mRNA-1 |
| chr6_1 | CDS | 20579598 | 20579774 | 20579598 | ID=Msa0879030-mRNA-1:cds;Parent=Msa0879030-mRNA-1 |
| chr6_1 | CDS | 20578970 | 20579043 | 20578970 | ID=Msa0879030-mRNA-1:cds;Parent=Msa0879030-mRNA-1 |
| chr6_1 | CDS | 20577989 | 20578043 | 20577989 | ID=Msa0879030-mRNA-1:cds;Parent=Msa0879030-mRNA-1 |
| chr6_1 | CDS | 20577828 | 20577902 | 20577828 | ID=Msa0879030-mRNA-1:cds;Parent=Msa0879030-mRNA-1 |
| chr6_1 | CDS | 20577331 | 20577404 | 20577331 | ID=Msa0879030-mRNA-1:cds;Parent=Msa0879030-mRNA-1 |
| chr6_1 | CDS | 20577139 | 20577211 | 20577139 | ID=Msa0879030-mRNA-1:cds;Parent=Msa0879030-mRNA-1 |
| chr6_1 | CDS | 20576891 | 20576975 | 20576891 | ID=Msa0879030-mRNA-1:cds;Parent=Msa0879030-mRNA-1 |
| chr6_1 | CDS | 20576425 | 20576481 | 20576425 | ID=Msa0879030-mRNA-1:cds;Parent=Msa0879030-mRNA-1 |
| chr6_1 | CDS | 20576296 | 20576342 | 20576296 | ID=Msa0879030-mRNA-1:cds;Parent=Msa0879030-mRNA-1 |
| chr6_1 | three_prime_UTR | 20575913 | 20576295 | 20575913 | ID=Msa0879030-mRNA-1:three_prime_utr;Parent=Msa0879030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
