Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365640 | XP_013451591.1 | 94.118 | 238 | 6 | 1 | 1 | 238 | 1 | 230 | 3.57e-167 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365640 | sp|Q9SGA5|OTU12_ARATH | 76.744 | 215 | 42 | 1 | 24 | 238 | 13 | 219 | 1.28e-128 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365640 | A0A072U777 | 94.118 | 238 | 6 | 1 | 1 | 238 | 1 | 230 | 1.71e-167 | 470 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa1365640 | -0.800090 | 1.696319e-48 | -8.615850e-47 |
| Msa0010460 | Msa1365640 | 0.809297 | 2.028850e-50 | -8.615850e-47 |
| Msa0017120 | Msa1365640 | -0.808102 | 3.651578e-50 | -8.615850e-47 |
| Msa0032400 | Msa1365640 | -0.817403 | 3.358548e-52 | -8.615850e-47 |
| Msa0041540 | Msa1365640 | -0.827633 | 1.404898e-54 | -8.615850e-47 |
| Msa0059960 | Msa1365640 | 0.855946 | 4.484257e-62 | -8.615850e-47 |
| Msa0065390 | Msa1365640 | -0.803303 | 3.718513e-49 | -8.615850e-47 |
| Msa0078090 | Msa1365640 | -0.825872 | 3.697966e-54 | -8.615850e-47 |
| Msa0089210 | Msa1365640 | -0.804297 | 2.311268e-49 | -8.615850e-47 |
| Msa0092180 | Msa1365640 | -0.803813 | 2.914061e-49 | -8.615850e-47 |
| Msa0092660 | Msa1365640 | -0.809924 | 1.487641e-50 | -8.615850e-47 |
| Msa0092730 | Msa1365640 | -0.808806 | 2.584820e-50 | -8.615850e-47 |
| Msa0110710 | Msa1365640 | -0.804360 | 2.242947e-49 | -8.615850e-47 |
| Msa1352290 | Msa1365640 | -0.804571 | 2.026814e-49 | -8.615850e-47 |
| Msa1354040 | Msa1365640 | -0.809135 | 2.197226e-50 | -8.615850e-47 |
| Msa1365640 | Msa1375630 | -0.833040 | 6.700174e-56 | -8.615850e-47 |
| Msa1365640 | Msa1376530 | -0.831840 | 1.328874e-55 | -8.615850e-47 |
| Msa1365640 | Msa1376640 | -0.813136 | 2.982426e-51 | -8.615850e-47 |
| Msa1365640 | Msa1398480 | -0.821088 | 4.862590e-53 | -8.615850e-47 |
| Msa1365640 | Msa1405770 | -0.809162 | 2.168087e-50 | -8.615850e-47 |
| Msa1365640 | Msa1407710 | -0.829361 | 5.374086e-55 | -8.615850e-47 |
| Msa1365640 | Msa1410170 | -0.804930 | 1.705028e-49 | -8.615850e-47 |
| Msa1365640 | Msa1438360 | -0.817629 | 2.986442e-52 | -8.615850e-47 |
| Msa0619330 | Msa1365640 | -0.800597 | 1.337792e-48 | -8.615850e-47 |
| Msa0639370 | Msa1365640 | -0.820112 | 8.147694e-53 | -8.615850e-47 |
| Msa0640880 | Msa1365640 | -0.814886 | 1.226273e-51 | -8.615850e-47 |
| Msa0642650 | Msa1365640 | -0.803783 | 2.956168e-49 | -8.615850e-47 |
| Msa0661470 | Msa1365640 | -0.819603 | 1.065007e-52 | -8.615850e-47 |
| Msa0681890 | Msa1365640 | -0.811871 | 5.637462e-51 | -8.615850e-47 |
| Msa0682460 | Msa1365640 | -0.808836 | 2.546633e-50 | -8.615850e-47 |
| Msa0703760 | Msa1365640 | -0.835999 | 1.209941e-56 | -8.615850e-47 |
| Msa0707780 | Msa1365640 | -0.814129 | 1.802408e-51 | -8.615850e-47 |
| Msa0709480 | Msa1365640 | -0.813071 | 3.080776e-51 | -8.615850e-47 |
| Msa0717090 | Msa1365640 | -0.804322 | 2.283848e-49 | -8.615850e-47 |
| Msa0720270 | Msa1365640 | -0.807271 | 5.482626e-50 | -8.615850e-47 |
| Msa0723150 | Msa1365640 | -0.802171 | 6.365750e-49 | -8.615850e-47 |
| Msa0730180 | Msa1365640 | -0.808025 | 3.792294e-50 | -8.615850e-47 |
| Msa0802210 | Msa1365640 | -0.808403 | 3.150484e-50 | -8.615850e-47 |
| Msa0803130 | Msa1365640 | -0.833199 | 6.115504e-56 | -8.615850e-47 |
| Msa0804110 | Msa1365640 | -0.820529 | 6.535695e-53 | -8.615850e-47 |
| Msa0841490 | Msa1365640 | -0.829735 | 4.359286e-55 | -8.615850e-47 |
| Msa0135980 | Msa1365640 | -0.810385 | 1.183435e-50 | -8.615850e-47 |
| Msa0137600 | Msa1365640 | -0.801413 | 9.112449e-49 | -8.615850e-47 |
| Msa0141670 | Msa1365640 | -0.802893 | 4.519772e-49 | -8.615850e-47 |
| Msa0157020 | Msa1365640 | -0.842125 | 3.130502e-58 | -8.615850e-47 |
| Msa0177280 | Msa1365640 | -0.800884 | 1.169041e-48 | -8.615850e-47 |
| Msa0185550 | Msa1365640 | -0.808129 | 3.603778e-50 | -8.615850e-47 |
| Msa0185700 | Msa1365640 | -0.824390 | 8.283515e-54 | -8.615850e-47 |
| Msa0203520 | Msa1365640 | -0.801827 | 7.492971e-49 | -8.615850e-47 |
| Msa0207000 | Msa1365640 | -0.814447 | 1.533788e-51 | -8.615850e-47 |
| Msa0223280 | Msa1365640 | -0.803450 | 3.465556e-49 | -8.615850e-47 |
| Msa0223390 | Msa1365640 | -0.822372 | 2.454132e-53 | -8.615850e-47 |
| Msa0230400 | Msa1365640 | -0.831430 | 1.676933e-55 | -8.615850e-47 |
| Msa1224670 | Msa1365640 | -0.806882 | 6.628121e-50 | -8.615850e-47 |
| Msa1235890 | Msa1365640 | -0.814338 | 1.620956e-51 | -8.615850e-47 |
| Msa1259470 | Msa1365640 | -0.842141 | 3.099523e-58 | -8.615850e-47 |
| Msa1271510 | Msa1365640 | -0.815766 | 7.812675e-52 | -8.615850e-47 |
| Msa1271600 | Msa1365640 | -0.831436 | 1.671582e-55 | -8.615850e-47 |
| Msa1280120 | Msa1365640 | -0.817506 | 3.183208e-52 | -8.615850e-47 |
| Msa1284030 | Msa1365640 | -0.805326 | 1.409056e-49 | -8.615850e-47 |
| Msa1293530 | Msa1365640 | -0.809313 | 2.012513e-50 | -8.615850e-47 |
| Msa1315980 | Msa1365640 | -0.819771 | 9.750045e-53 | -8.615850e-47 |
| Msa1317030 | Msa1365640 | -0.804153 | 2.476305e-49 | -8.615850e-47 |
| Msa1323060 | Msa1365640 | -0.812581 | 3.944231e-51 | -8.615850e-47 |
| Msa0380310 | Msa1365640 | -0.810157 | 1.325293e-50 | -8.615850e-47 |
| Msa0380420 | Msa1365640 | -0.828457 | 8.895985e-55 | -8.615850e-47 |
| Msa0386270 | Msa1365640 | -0.819647 | 1.040615e-52 | -8.615850e-47 |
| Msa0417630 | Msa1365640 | -0.813524 | 2.450175e-51 | -8.615850e-47 |
| Msa0436090 | Msa1365640 | -0.819068 | 1.410333e-52 | -8.615850e-47 |
| Msa0476150 | Msa1365640 | -0.800501 | 1.399391e-48 | -8.615850e-47 |
| Msa1004500 | Msa1365640 | -0.812479 | 4.152211e-51 | -8.615850e-47 |
| Msa1004520 | Msa1365640 | -0.808433 | 3.104697e-50 | -8.615850e-47 |
| Msa1028460 | Msa1365640 | -0.829087 | 6.264171e-55 | -8.615850e-47 |
| Msa1084490 | Msa1365640 | -0.818386 | 2.013716e-52 | -8.615850e-47 |
| Msa1097850 | Msa1365640 | -0.804839 | 1.781436e-49 | -8.615850e-47 |
| Msa1106560 | Msa1365640 | -0.808080 | 3.692744e-50 | -8.615850e-47 |
| Msa0259980 | Msa1365640 | -0.808954 | 2.403071e-50 | -8.615850e-47 |
| Msa0274780 | Msa1365640 | -0.843998 | 9.920415e-59 | -8.615850e-47 |
| Msa0296610 | Msa1365640 | -0.820749 | 5.817697e-53 | -8.615850e-47 |
| Msa0298970 | Msa1365640 | -0.809668 | 1.688447e-50 | -8.615850e-47 |
| Msa0302660 | Msa1365640 | -0.805943 | 1.045825e-49 | -8.615850e-47 |
| Msa0314790 | Msa1365640 | -0.811865 | 5.654359e-51 | -8.615850e-47 |
| Msa0315480 | Msa1365640 | -0.812032 | 5.198803e-51 | -8.615850e-47 |
| Msa0323990 | Msa1365640 | -0.814881 | 1.228984e-51 | -8.615850e-47 |
| Msa0339860 | Msa1365640 | -0.812380 | 4.365822e-51 | -8.615850e-47 |
| Msa1125780 | Msa1365640 | -0.815320 | 9.822763e-52 | -8.615850e-47 |
| Msa1125950 | Msa1365640 | -0.816177 | 6.324864e-52 | -8.615850e-47 |
| Msa1129720 | Msa1365640 | -0.808688 | 2.738715e-50 | -8.615850e-47 |
| Msa1134400 | Msa1365640 | -0.804133 | 2.500227e-49 | -8.615850e-47 |
| Msa1166180 | Msa1365640 | -0.815901 | 7.288559e-52 | -8.615850e-47 |
| Msa1166280 | Msa1365640 | -0.812255 | 4.647491e-51 | -8.615850e-47 |
| Msa1171340 | Msa1365640 | -0.814176 | 1.760354e-51 | -8.615850e-47 |
| Msa1183390 | Msa1365640 | -0.803411 | 3.530503e-49 | -8.615850e-47 |
| Msa1183610 | Msa1365640 | -0.822551 | 2.229412e-53 | -8.615850e-47 |
| Msa1220450 | Msa1365640 | 0.818815 | 1.610146e-52 | -8.615850e-47 |
| Msa1220460 | Msa1365640 | 0.818240 | 2.173098e-52 | -8.615850e-47 |
| Msa1220480 | Msa1365640 | 0.817594 | 3.041030e-52 | -8.615850e-47 |
| Msa1223840 | Msa1365640 | -0.805997 | 1.018829e-49 | -8.615850e-47 |
| Msa0506760 | Msa1365640 | -0.816753 | 4.701024e-52 | -8.615850e-47 |
| Msa0524090 | Msa1365640 | -0.807952 | 3.931507e-50 | -8.615850e-47 |
| Msa0524120 | Msa1365640 | -0.809234 | 2.092915e-50 | -8.615850e-47 |
| Msa0538570 | Msa1365640 | -0.819347 | 1.218226e-52 | -8.615850e-47 |
| Msa0546380 | Msa1365640 | -0.802899 | 4.506083e-49 | -8.615850e-47 |
| Msa0561510 | Msa1365640 | -0.804643 | 1.957271e-49 | -8.615850e-47 |
| Msa0567290 | Msa1365640 | -0.827862 | 1.237411e-54 | -8.615850e-47 |
| Msa0576420 | Msa1365640 | -0.818245 | 2.167270e-52 | -8.615850e-47 |
| Msa0594390 | Msa1365640 | -0.820181 | 7.856173e-53 | -8.615850e-47 |
| Msa0600390 | Msa1365640 | -0.819213 | 1.306654e-52 | -8.615850e-47 |
| Msa0843690 | Msa1365640 | -0.805117 | 1.558643e-49 | -8.615850e-47 |
| Msa0878980 | Msa1365640 | 0.860458 | 2.036255e-63 | -8.615850e-47 |
| Msa0879030 | Msa1365640 | 0.926159 | 6.871163e-91 | -8.615850e-47 |
| Msa0925160 | Msa1365640 | -0.809194 | 2.134111e-50 | -8.615850e-47 |
| Msa0930330 | Msa1365640 | -0.808331 | 3.264128e-50 | -8.615850e-47 |
| Msa0931480 | Msa1365640 | -0.821351 | 4.229099e-53 | -8.615850e-47 |
| Msa0955260 | Msa1365640 | -0.805968 | 1.032892e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365640 | MtrunA17_Chr6g0461741 | 94.118 | 238 | 6 | 1 | 1 | 238 | 1 | 230 | 3.29e-171 | 470 |
| Msa1365640 | MtrunA17_Chr3g0120091 | 57.870 | 216 | 80 | 3 | 25 | 238 | 23 | 229 | 4.09e-91 | 268 |
| Msa1365640 | MtrunA17_Chr1g0180941 | 45.833 | 240 | 114 | 4 | 1 | 236 | 104 | 331 | 8.25e-75 | 230 |
| Msa1365640 | MtrunA17_Chr1g0199461 | 51.364 | 220 | 97 | 3 | 18 | 236 | 146 | 356 | 2.86e-74 | 229 |
| Msa1365640 | MtrunA17_Chr4g0053171 | 36.957 | 92 | 56 | 1 | 77 | 166 | 28 | 119 | 4.37e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365640 | AT3G02070.1 | 76.744 | 215 | 42 | 1 | 24 | 238 | 13 | 219 | 1.31e-129 | 365 |
| Msa1365640 | AT3G02070.2 | 76.744 | 215 | 42 | 1 | 24 | 238 | 13 | 219 | 1.31e-129 | 365 |
| Msa1365640 | AT3G22260.1 | 60.280 | 214 | 75 | 3 | 26 | 238 | 36 | 240 | 1.50e-91 | 270 |
| Msa1365640 | AT3G22260.4 | 59.633 | 218 | 75 | 4 | 26 | 238 | 36 | 245 | 4.49e-90 | 266 |
| Msa1365640 | AT3G22260.3 | 59.633 | 218 | 75 | 4 | 26 | 238 | 36 | 245 | 4.49e-90 | 266 |
| Msa1365640 | AT3G22260.6 | 59.633 | 218 | 75 | 4 | 26 | 238 | 36 | 245 | 4.49e-90 | 266 |
| Msa1365640 | AT3G22260.5 | 59.633 | 218 | 75 | 4 | 26 | 238 | 36 | 245 | 4.49e-90 | 266 |
| Msa1365640 | AT3G22260.2 | 59.633 | 218 | 75 | 4 | 26 | 238 | 36 | 245 | 4.49e-90 | 266 |
| Msa1365640 | AT5G04250.2 | 50.000 | 212 | 94 | 3 | 28 | 238 | 145 | 345 | 1.66e-73 | 227 |
| Msa1365640 | AT5G04250.1 | 50.000 | 212 | 94 | 3 | 28 | 238 | 145 | 345 | 1.66e-73 | 227 |
| Msa1365640 | AT5G03330.1 | 45.570 | 237 | 116 | 4 | 4 | 238 | 129 | 354 | 2.09e-68 | 214 |
| Msa1365640 | AT5G03330.2 | 45.570 | 237 | 116 | 4 | 4 | 238 | 129 | 354 | 2.09e-68 | 214 |
| Msa1365640 | AT5G03330.3 | 45.673 | 208 | 101 | 3 | 4 | 210 | 129 | 325 | 5.98e-58 | 187 |
| Msa1365640 | AT5G03330.4 | 45.673 | 208 | 101 | 3 | 4 | 210 | 129 | 325 | 5.98e-58 | 187 |
| Msa1365640 | AT2G39320.1 | 33.594 | 128 | 57 | 3 | 95 | 221 | 2 | 102 | 2.54e-17 | 77.4 |
| Msa1365640 | AT5G67170.2 | 30.137 | 146 | 88 | 3 | 77 | 219 | 24 | 158 | 2.39e-12 | 66.2 |
| Msa1365640 | AT5G67170.1 | 30.137 | 146 | 88 | 3 | 77 | 219 | 24 | 158 | 2.39e-12 | 66.2 |
Find 83 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAAGTGTGGTTGAGCTTC+TGG | 0.259325 | tig0018369:+186645 | Msa1365640:intron |
| CTTTGTGAAGTTAGAGTATC+TGG | 0.260470 | tig0018369:+185102 | Msa1365640:CDS |
| TGCAATTGTTGTAGGGTTAT+TGG | 0.280794 | tig0018369:+183271 | Msa1365640:intron |
| ACCAACTGCTCCATCTAAAT+TGG | 0.295926 | tig0018369:-183479 | None:intergenic |
| CTCCTTGGTTTGTGCTGGAT+TGG | 0.304888 | tig0018369:-186792 | None:intergenic |
| ATGGAAGACAGACTCAAAAT+TGG | 0.312696 | tig0018369:+183362 | Msa1365640:CDS |
| ATAGTTTCAAGTTTCAATTC+TGG | 0.314289 | tig0018369:-186940 | None:intergenic |
| CTACTTCATCTTTGATACTT+TGG | 0.328277 | tig0018369:-186968 | None:intergenic |
| TTCGAACTTGGCACCTGTTC+CGG | 0.338179 | tig0018369:+183510 | Msa1365640:CDS |
| GTTTCCTCCTTGGTTTGTGC+TGG | 0.339042 | tig0018369:-186797 | None:intergenic |
| CGAACATGCTTGTGGTGTTC+AGG | 0.343767 | tig0018369:-185260 | None:intergenic |
| AAGTAGGTTGTAGATATATT+AGG | 0.349984 | tig0018369:+186985 | Msa1365640:three_prime_UTR |
| TAATATCGTTTGTACTTCAT+TGG | 0.355923 | tig0018369:-185761 | None:intergenic |
| CACTATAAATGACGCCAGTA+TGG | 0.372664 | tig0018369:+184115 | Msa1365640:CDS |
| GGGTGACCATGTTACCTTAC+AGG | 0.378745 | tig0018369:+185930 | Msa1365640:CDS |
| TGGAAGACAGACTCAAAATT+GGG | 0.391954 | tig0018369:+183363 | Msa1365640:CDS |
| GTGTTGGGATTTAGAATGAA+TGG | 0.391999 | tig0018369:-182415 | None:intergenic |
| GAAGAGTATGCCAATTTAGA+TGG | 0.397908 | tig0018369:+183469 | Msa1365640:CDS |
| CTTACAGGCAGCTTCTGATA+AGG | 0.408830 | tig0018369:+185945 | Msa1365640:CDS |
| TCGTAAAGATATTGTAAAAC+AGG | 0.423090 | tig0018369:+185280 | Msa1365640:CDS |
| GCAGGGATTCCTACCGGAAC+AGG | 0.425396 | tig0018369:-183523 | None:intergenic |
| CATACTGGCGTCATTTATAG+TGG | 0.427137 | tig0018369:-184114 | None:intergenic |
| AACAACCAATGTTTCCTCCT+TGG | 0.432342 | tig0018369:-186807 | None:intergenic |
| CTTATCAGAAGCTGCCTGTA+AGG | 0.433796 | tig0018369:-185944 | None:intergenic |
| TGTTGTAGGGTTATTGGCTG+TGG | 0.439555 | tig0018369:+183277 | Msa1365640:intron |
| TATAATGTAAATAATAGTAA+AGG | 0.440863 | tig0018369:-187051 | None:intergenic |
| TGGTACATAGGATTCATATA+AGG | 0.449434 | tig0018369:-185741 | None:intergenic |
| TTTGTACTTCATTGGTACAT+AGG | 0.451108 | tig0018369:-185753 | None:intergenic |
| AACTCACTTTATGAAATTCG+AGG | 0.456383 | tig0018369:+186683 | Msa1365640:CDS |
| ATAATGTAAATAATAGTAAA+GGG | 0.469665 | tig0018369:-187050 | None:intergenic |
| TGCTCTATTCAATATAAGAT+AGG | 0.470550 | tig0018369:-187113 | None:intergenic |
| CCTTGTGCAGATCTGGAGAA+TGG | 0.471939 | tig0018369:+185908 | Msa1365640:intron |
| ATCTGGAGATGGAAATTGTC+AGG | 0.472072 | tig0018369:+185119 | Msa1365640:CDS |
| CACTTTCAGATCAGCTGTAC+CGG | 0.478852 | tig0018369:+185234 | Msa1365640:CDS |
| CAAAGTATCAAAGATGAAGT+AGG | 0.480335 | tig0018369:+186969 | Msa1365640:three_prime_UTR |
| AGAAGATGTAGTGTCGTGTA+TGG | 0.493008 | tig0018369:+186832 | Msa1365640:exon |
| AACCTGTGAGCGATTGTGTT+GGG | 0.500150 | tig0018369:-182430 | None:intergenic |
| CTTGTGCAGATCTGGAGAAT+GGG | 0.504959 | tig0018369:+185909 | Msa1365640:intron |
| TATTATTTACATTATACTCA+TGG | 0.510521 | tig0018369:+187058 | Msa1365640:three_prime_UTR |
| AACTTCGCTTAGTAGTCAGC+AGG | 0.513849 | tig0018369:+183408 | Msa1365640:CDS |
| TATTAGGAGCAAACCGGCGC+GGG | 0.513873 | tig0018369:+187001 | Msa1365640:three_prime_UTR |
| GTCATTTATAGTGGGGATGA+AGG | 0.516277 | tig0018369:-184105 | None:intergenic |
| ATTGGCTGTGGATTGTGTTG+AGG | 0.516663 | tig0018369:+183289 | Msa1365640:five_prime_UTR |
| GAAGAAGACACGGTAGTAGT+TGG | 0.517300 | tig0018369:-182270 | None:intergenic |
| GATGATTGCTCTTGTGCTAT+CGG | 0.520346 | tig0018369:+183447 | Msa1365640:CDS |
| TGTTGGGATTTAGAATGAAT+GGG | 0.531457 | tig0018369:-182414 | None:intergenic |
| TAGATATATTAGGAGCAAAC+CGG | 0.531781 | tig0018369:+186995 | Msa1365640:three_prime_UTR |
| CAAACGATATTACAAGAGAA+TGG | 0.535116 | tig0018369:+185772 | Msa1365640:CDS |
| CAGACGCTGATGATCCATAC+TGG | 0.538309 | tig0018369:-184129 | None:intergenic |
| GCCAATTTAGATGGAGCAGT+TGG | 0.540811 | tig0018369:+183478 | Msa1365640:CDS |
| GGGGATGAAGGTATTTATGC+GGG | 0.542802 | tig0018369:-184093 | None:intergenic |
| ATCATCAGCGTCTGCTACAG+AGG | 0.553379 | tig0018369:+184138 | Msa1365640:CDS |
| CGCTGCGGTGCTTGGTACAG+TGG | 0.555933 | tig0018369:-186214 | None:intergenic |
| ATACTGGCGTCATTTATAGT+GGG | 0.564488 | tig0018369:-184113 | None:intergenic |
| GCTTGTGGTGTTCAGGTGAC+CGG | 0.574916 | tig0018369:-185253 | None:intergenic |
| GAACAGGTGCCAAGTTCGAA+AGG | 0.581669 | tig0018369:-183507 | None:intergenic |
| ATCCCAACACAATCGCTCAC+AGG | 0.584837 | tig0018369:+182428 | Msa1365640:five_prime_UTR |
| GAAGTTAGAGTATCTGGAGA+TGG | 0.586909 | tig0018369:+185108 | Msa1365640:CDS |
| GTGGTTGAGCTTCTGGTCCG+AGG | 0.587217 | tig0018369:+186652 | Msa1365640:CDS |
| ACAAGTGATTTCTCCCGCGC+CGG | 0.587738 | tig0018369:-187014 | None:intergenic |
| ACAAACCAAGGAGGAAACAT+TGG | 0.595884 | tig0018369:+186802 | Msa1365640:CDS |
| ATTTAGATGGAGCAGTTGGT+CGG | 0.596467 | tig0018369:+183482 | Msa1365640:CDS |
| ATGAATGGGTGTGATGAAGA+AGG | 0.597213 | tig0018369:-182400 | None:intergenic |
| TATCTTTACGAACATGCTTG+TGG | 0.599180 | tig0018369:-185268 | None:intergenic |
| TATCTCTGAATGATGTCAGA+AGG | 0.609488 | tig0018369:-186171 | None:intergenic |
| AAGCTGCCTGTAAGGTAACA+TGG | 0.614667 | tig0018369:-185936 | None:intergenic |
| CACCAATCCAGCACAAACCA+AGG | 0.617742 | tig0018369:+186790 | Msa1365640:CDS |
| CATAGGATTCATATAAGGAA+CGG | 0.626211 | tig0018369:-185736 | None:intergenic |
| GTCGTGTATGGCTCATCGAA+TGG | 0.630803 | tig0018369:+186844 | Msa1365640:three_prime_UTR |
| AAGTGAGTTGTAATGAACCT+CGG | 0.634872 | tig0018369:-186669 | None:intergenic |
| TACTGGCGTCATTTATAGTG+GGG | 0.643650 | tig0018369:-184112 | None:intergenic |
| AAACCTGTGAGCGATTGTGT+TGG | 0.649827 | tig0018369:-182431 | None:intergenic |
| ACAGCTGATCTGAAAGTGCA+CGG | 0.650890 | tig0018369:-185229 | None:intergenic |
| GGAAGACAGACTCAAAATTG+GGG | 0.661464 | tig0018369:+183364 | Msa1365640:CDS |
| TGGGGATGAAGGTATTTATG+CGG | 0.664042 | tig0018369:-184094 | None:intergenic |
| TTCTTAATGATGCAGAAGTG+TGG | 0.666124 | tig0018369:+186633 | Msa1365640:intron |
| ATATTAGGAGCAAACCGGCG+CGG | 0.670908 | tig0018369:+187000 | Msa1365640:three_prime_UTR |
| AATGGGTGTGATGAAGAAGG+AGG | 0.677563 | tig0018369:-182397 | None:intergenic |
| TTGTGCAGATCTGGAGAATG+GGG | 0.683415 | tig0018369:+185910 | Msa1365640:intron |
| CAATCCAGCACAAACCAAGG+AGG | 0.692550 | tig0018369:+186793 | Msa1365640:CDS |
| AAGGTTGATGGAAGAAGACA+CGG | 0.696191 | tig0018369:-182280 | None:intergenic |
| CTGTACCAAGCACCGCAGCG+CGG | 0.717604 | tig0018369:+186217 | Msa1365640:CDS |
| GGGATGAAGGTATTTATGCG+GGG | 0.722601 | tig0018369:-184092 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAATATGAAGAAA+GGG | - | tig0018369:182469-182488 | None:intergenic | 10.0% |
| !! | ATTAAAAAAAATATGAAGAA+AGG | - | tig0018369:182470-182489 | None:intergenic | 10.0% |
| !!! | TTTTTACAAGAAAAATATTT+TGG | + | tig0018369:182843-182862 | Msa1365640:intron | 10.0% |
| !!! | AGAAAATTTAAAACTATATT+AGG | - | tig0018369:185185-185204 | None:intergenic | 10.0% |
| !! | ATATAAATTAATACATTTCA+CGG | - | tig0018369:185345-185364 | None:intergenic | 10.0% |
| !! | AAATGTAAATAGTTAATAAT+TGG | - | tig0018369:186012-186031 | None:intergenic | 10.0% |
| !! | ATAATGTAAATAATAGTAAA+GGG | - | tig0018369:187053-187072 | None:intergenic | 10.0% |
| !! | TATAATGTAAATAATAGTAA+AGG | - | tig0018369:187054-187073 | None:intergenic | 10.0% |
| !!! | TAAAAGTAAAGTTTTCAATT+TGG | - | tig0018369:182317-182336 | None:intergenic | 15.0% |
| !! | TTTATAATCTTGAATTTGAA+GGG | + | tig0018369:182734-182753 | Msa1365640:intron | 15.0% |
| !!! | AAATTTTATTGTTAAACTGT+GGG | - | tig0018369:183567-183586 | None:intergenic | 15.0% |
| !! | TATAAATTAATACATTTCAC+GGG | - | tig0018369:185344-185363 | None:intergenic | 15.0% |
| !! | AGTTATATACTGTAATATTT+AGG | + | tig0018369:185551-185570 | Msa1365640:intron | 15.0% |
| !! | GTTATATACTGTAATATTTA+GGG | + | tig0018369:185552-185571 | Msa1365640:intron | 15.0% |
| !! | TACATTAAAAAATAAGAAAC+AGG | - | tig0018369:186133-186152 | None:intergenic | 15.0% |
| !! | TATTATTTACATTATACTCA+TGG | + | tig0018369:187058-187077 | Msa1365640:three_prime_UTR | 15.0% |
| !!! | ATCATTTTCTATCATTGATT+TGG | + | tig0018369:182626-182645 | Msa1365640:intron | 20.0% |
| !! | CTTTATAATCTTGAATTTGA+AGG | + | tig0018369:182733-182752 | Msa1365640:intron | 20.0% |
| !!! | GATTGTACTATTAGAATTTT+AGG | + | tig0018369:182792-182811 | Msa1365640:intron | 20.0% |
| !!! | ACAAGAAAAATATTTTGGAT+TGG | + | tig0018369:182848-182867 | Msa1365640:intron | 20.0% |
| !!! | CAAGAAAAATATTTTGGATT+GGG | + | tig0018369:182849-182868 | Msa1365640:intron | 20.0% |
| !!! | CCATTTTCTGAAATTATTAA+CGG | + | tig0018369:182968-182987 | Msa1365640:intron | 20.0% |
| !!! | GAATTTTACGATTAATAATG+TGG | + | tig0018369:183178-183197 | Msa1365640:intron | 20.0% |
| !!! | CAAATTTTATTGTTAAACTG+TGG | - | tig0018369:183568-183587 | None:intergenic | 20.0% |
| !!! | AATTTTTATTTAGAATAGCG+AGG | - | tig0018369:183742-183761 | None:intergenic | 20.0% |
| !!! | TATGGAATTTTCAATATTTG+TGG | + | tig0018369:184021-184040 | Msa1365640:intron | 20.0% |
| !! | TACAACTATATCTACAATAA+TGG | - | tig0018369:184631-184650 | None:intergenic | 20.0% |
| !! | ATATTTAGGGAAGAAAAATA+CGG | + | tig0018369:185565-185584 | Msa1365640:intron | 20.0% |
| !!! | TATCCATTTTCAATATTCAA+CGG | - | tig0018369:185664-185683 | None:intergenic | 20.0% |
| !! | ATATATAATAGCTTAAGTGA+CGG | - | tig0018369:185821-185840 | None:intergenic | 20.0% |
| !! | AAGAAAATAAAAGGAAACAA+AGG | - | tig0018369:186618-186637 | None:intergenic | 20.0% |
| !! | TGCATCATTAAGAAAATAAA+AGG | - | tig0018369:186627-186646 | None:intergenic | 20.0% |
| !!! | AGTTTTCAATTTGGTGTTTT+TGG | - | tig0018369:182308-182327 | None:intergenic | 25.0% |
| ! | AAAAAATATGAAGAAAGGGA+AGG | - | tig0018369:182465-182484 | None:intergenic | 25.0% |
| ! | TTCAATGTAATCACATTTGT+CGG | - | tig0018369:182943-182962 | None:intergenic | 25.0% |
| ! | CCGTTAATAATTTCAGAAAA+TGG | - | tig0018369:182971-182990 | None:intergenic | 25.0% |
| ! | GTAAAATTCTAATAACCATG+AGG | - | tig0018369:183167-183186 | None:intergenic | 25.0% |
| ! | ATGAACAAAAAAGATCGAAT+CGG | - | tig0018369:183241-183260 | None:intergenic | 25.0% |
| ! | TATGTTTATGCAATTGTTGT+AGG | + | tig0018369:183263-183282 | Msa1365640:intron | 25.0% |
| ! | ATGTTTATGCAATTGTTGTA+GGG | + | tig0018369:183264-183283 | Msa1365640:intron | 25.0% |
| !! | TCGAAGTTTCAAAAAGTTTT+CGG | + | tig0018369:183324-183343 | Msa1365640:five_prime_UTR | 25.0% |
| !! | TTTCAAAAAGTTTTCGGTTT+TGG | + | tig0018369:183330-183349 | Msa1365640:five_prime_UTR | 25.0% |
| !! | AATTTTGCAACAAGATTAGT+TGG | + | tig0018369:183763-183782 | Msa1365640:intron | 25.0% |
| !!! | GTAATATGTGCTATTTGAAA+TGG | - | tig0018369:184346-184365 | None:intergenic | 25.0% |
| !!! | ATTACCAGTGTTGTTAATTT+TGG | + | tig0018369:184361-184380 | Msa1365640:intron | 25.0% |
| !!! | TTACCAGTGTTGTTAATTTT+GGG | + | tig0018369:184362-184381 | Msa1365640:intron | 25.0% |
| ! | GTACAAATTATTCTGAATAG+AGG | + | tig0018369:184448-184467 | Msa1365640:intron | 25.0% |
| !! | TGTAGATATAGTTGTACTTT+TGG | + | tig0018369:184635-184654 | Msa1365640:intron | 25.0% |
| !! | GTAGATATAGTTGTACTTTT+GGG | + | tig0018369:184636-184655 | Msa1365640:intron | 25.0% |
| !! | ATGGTTAACGAAGTATTATA+TGG | + | tig0018369:184802-184821 | Msa1365640:intron | 25.0% |
| !! | TGGTTAACGAAGTATTATAT+GGG | + | tig0018369:184803-184822 | Msa1365640:intron | 25.0% |
| ! | AAGAATTTCAGTAACTTATC+CGG | - | tig0018369:184855-184874 | None:intergenic | 25.0% |
| ! | ATAAGTTACTGAAATTCTTC+TGG | + | tig0018369:184856-184875 | Msa1365640:intron | 25.0% |
| ! | TGGATTATTTAATGATGTAG+TGG | + | tig0018369:184893-184912 | Msa1365640:intron | 25.0% |
| !!! | CCTCGTTATTTTAAAAATCT+AGG | - | tig0018369:184974-184993 | None:intergenic | 25.0% |
| !!! | CCTAGATTTTTAAAATAACG+AGG | + | tig0018369:184971-184990 | Msa1365640:intron | 25.0% |
| ! | CTAAAAGAGTGAAGATAAAA+TGG | - | tig0018369:185066-185085 | None:intergenic | 25.0% |
| !! | CATTTTATCTTCACTCTTTT+AGG | + | tig0018369:185064-185083 | Msa1365640:intron | 25.0% |
| !! | TTTTATTGCAATTGTGTACA+AGG | + | tig0018369:185147-185166 | Msa1365640:intron | 25.0% |
| ! | TCGTAAAGATATTGTAAAAC+AGG | + | tig0018369:185280-185299 | Msa1365640:CDS | 25.0% |
| !! | TTTATCTCCAATCTTTTCTT+TGG | - | tig0018369:185400-185419 | None:intergenic | 25.0% |
| ! | AACGATAAAGAACAAATTTC+AGG | - | tig0018369:185449-185468 | None:intergenic | 25.0% |
| !! | ATCCATTTTCAATATTCAAC+GGG | - | tig0018369:185663-185682 | None:intergenic | 25.0% |
| ! | TAATATCGTTTGTACTTCAT+TGG | - | tig0018369:185764-185783 | None:intergenic | 25.0% |
| !! | TTTTGAATCAGGTTTTTTGT+TGG | + | tig0018369:185980-185999 | Msa1365640:intron | 25.0% |
| ! | GAATTCTCTTGACAAAATTA+AGG | + | tig0018369:186040-186059 | Msa1365640:intron | 25.0% |
| ! | GTTATAACAAGATATAACAG+CGG | - | tig0018369:186253-186272 | None:intergenic | 25.0% |
| !! | ATGACTTTTACTCACAAATA+GGG | - | tig0018369:186395-186414 | None:intergenic | 25.0% |
| !! | AATGACTTTTACTCACAAAT+AGG | - | tig0018369:186396-186415 | None:intergenic | 25.0% |
| ! | TTTGTGAGTAAAAGTCATTT+CGG | + | tig0018369:186397-186416 | Msa1365640:intron | 25.0% |
| !!! | TTTTAGTTCTTAAATGTGTG+TGG | - | tig0018369:186550-186569 | None:intergenic | 25.0% |
| ! | AATATGCTTATGCTTAATAG+AGG | - | tig0018369:186731-186750 | None:intergenic | 25.0% |
| !!! | ATAGTTTCAAGTTTCAATTC+TGG | - | tig0018369:186943-186962 | None:intergenic | 25.0% |
| ! | AAGTAGGTTGTAGATATATT+AGG | + | tig0018369:186985-187004 | Msa1365640:three_prime_UTR | 25.0% |
| ! | TGCTCTATTCAATATAAGAT+AGG | - | tig0018369:187116-187135 | None:intergenic | 25.0% |
| !!! | TCACAAAGTAAGTTTTTTGA+AGG | - | tig0018369:187168-187187 | None:intergenic | 25.0% |
| !!! | CAATTTGGTGTTTTTGGTTA+AGG | - | tig0018369:182302-182321 | None:intergenic | 30.0% |
| ! | TGTTGGGATTTAGAATGAAT+GGG | - | tig0018369:182417-182436 | None:intergenic | 30.0% |
| AATTATTATCTCTGTAGCTC+CGG | + | tig0018369:182873-182892 | Msa1365640:intron | 30.0% | |
| AATATGAGACGGTTGTAAAA+TGG | - | tig0018369:183085-183104 | None:intergenic | 30.0% | |
| ! | ATTTTACAACCGTCTCATAT+TGG | + | tig0018369:183084-183103 | Msa1365640:intron | 30.0% |
| TGTTCAAATCCAATATGAGA+CGG | - | tig0018369:183096-183115 | None:intergenic | 30.0% | |
| GGAAAAACTTATCACTTGTT+AGG | + | tig0018369:183199-183218 | Msa1365640:intron | 30.0% | |
| !! | TTGTGTTGAGGTTTTTGTTT+AGG | + | tig0018369:183301-183320 | Msa1365640:five_prime_UTR | 30.0% |
| ! | TTTTATTGTTAAACTGTGGG+TGG | - | tig0018369:183564-183583 | None:intergenic | 30.0% |
| ! | TCTTCTTTTTAAATCACTCG+CGG | + | tig0018369:183630-183649 | Msa1365640:intron | 30.0% |
| GTAGATTCTACATAACAGAA+TGG | - | tig0018369:184168-184187 | None:intergenic | 30.0% | |
| ! | AGAATCTACTATTTCTTGTG+AGG | + | tig0018369:184179-184198 | Msa1365640:intron | 30.0% |
| ! | TAGCTGTATTTCTACCAAAA+GGG | - | tig0018369:184236-184255 | None:intergenic | 30.0% |
| !! | TACCAGTGTTGTTAATTTTG+GGG | + | tig0018369:184363-184382 | Msa1365640:intron | 30.0% |
| ATATGCACTGTTATCAATTG+CGG | - | tig0018369:184536-184555 | None:intergenic | 30.0% | |
| TGATAACAGTGCATATAACT+TGG | + | tig0018369:184540-184559 | Msa1365640:intron | 30.0% | |
| TATGAAAATGACTTGAGGAT+AGG | + | tig0018369:184570-184589 | Msa1365640:intron | 30.0% | |
| ! | TTCTGGTTACAATAAGTACT+TGG | + | tig0018369:184873-184892 | Msa1365640:intron | 30.0% |
| ! | TAACTTTGAGTTACTTGCTT+AGG | - | tig0018369:184936-184955 | None:intergenic | 30.0% |
| AAGCAAGTAACTCAAAGTTA+AGG | + | tig0018369:184936-184955 | Msa1365640:intron | 30.0% | |
| !! | TTATCTTCACTCTTTTAGGT+TGG | + | tig0018369:185068-185087 | Msa1365640:intron | 30.0% |
| !!! | TCTTTTAGGTTGGATGTTTA+TGG | + | tig0018369:185078-185097 | Msa1365640:intron | 30.0% |
| GCATATTCCAAAGAAAAGAT+TGG | + | tig0018369:185390-185409 | Msa1365640:intron | 30.0% | |
| TTGTTCTTTATCGTTGATCA+AGG | + | tig0018369:185454-185473 | Msa1365640:intron | 30.0% | |
| CTAAGGTTACTATTTACTAC+AGG | - | tig0018369:185483-185502 | None:intergenic | 30.0% | |
| ! | TTTCAATTTTCTTCTCTAGC+AGG | - | tig0018369:185517-185536 | None:intergenic | 30.0% |
| ! | TCCATTTTCAATATTCAACG+GGG | - | tig0018369:185662-185681 | None:intergenic | 30.0% |
| CATAGGATTCATATAAGGAA+CGG | - | tig0018369:185739-185758 | None:intergenic | 30.0% | |
| TGGTACATAGGATTCATATA+AGG | - | tig0018369:185744-185763 | None:intergenic | 30.0% | |
| TTTGTACTTCATTGGTACAT+AGG | - | tig0018369:185756-185775 | None:intergenic | 30.0% | |
| CAAACGATATTACAAGAGAA+TGG | + | tig0018369:185772-185791 | Msa1365640:CDS | 30.0% | |
| !!! | TCGTAATGTTGTTTTGAATC+AGG | + | tig0018369:185969-185988 | Msa1365640:CDS | 30.0% |
| TTTGTCAAGAGAATTCGAAA+AGG | - | tig0018369:186036-186055 | None:intergenic | 30.0% | |
| TAAATACGTCTTTCGTTAGT+CGG | - | tig0018369:186480-186499 | None:intergenic | 30.0% | |
| AACTCACTTTATGAAATTCG+AGG | + | tig0018369:186683-186702 | Msa1365640:CDS | 30.0% | |
| CTACTTCATCTTTGATACTT+TGG | - | tig0018369:186971-186990 | None:intergenic | 30.0% | |
| ! | CAAAGTATCAAAGATGAAGT+AGG | + | tig0018369:186969-186988 | Msa1365640:three_prime_UTR | 30.0% |
| TAGATATATTAGGAGCAAAC+CGG | + | tig0018369:186995-187014 | Msa1365640:three_prime_UTR | 30.0% | |
| !!! | GTGTTTTTGGTTAAGGTTGA+TGG | - | tig0018369:182295-182314 | None:intergenic | 35.0% |
| ! | GTGTTGGGATTTAGAATGAA+TGG | - | tig0018369:182418-182437 | None:intergenic | 35.0% |
| TGCAATTGTTGTAGGGTTAT+TGG | + | tig0018369:183271-183290 | Msa1365640:intron | 35.0% | |
| !!! | TCGGTTTTGGATATGATGAA+TGG | + | tig0018369:183343-183362 | Msa1365640:exon | 35.0% |
| ATGGAAGACAGACTCAAAAT+TGG | + | tig0018369:183362-183381 | Msa1365640:CDS | 35.0% | |
| TGGAAGACAGACTCAAAATT+GGG | + | tig0018369:183363-183382 | Msa1365640:CDS | 35.0% | |
| ! | GAAGAGTATGCCAATTTAGA+TGG | + | tig0018369:183469-183488 | Msa1365640:CDS | 35.0% |
| ! | TTATTTAGAATAGCGAGGCA+AGG | - | tig0018369:183737-183756 | None:intergenic | 35.0% |
| ATTCCTATGTAAGATCACTC+GGG | - | tig0018369:183807-183826 | None:intergenic | 35.0% | |
| GATTCCTATGTAAGATCACT+CGG | - | tig0018369:183808-183827 | None:intergenic | 35.0% | |
| TCTTAAGATCGGTTAATGGT+GGG | - | tig0018369:183897-183916 | None:intergenic | 35.0% | |
| ACCATTAACCGATCTTAAGA+GGG | + | tig0018369:183897-183916 | Msa1365640:intron | 35.0% | |
| ATACTGGCGTCATTTATAGT+GGG | - | tig0018369:184116-184135 | None:intergenic | 35.0% | |
| ! | GTAGCTGTATTTCTACCAAA+AGG | - | tig0018369:184237-184256 | None:intergenic | 35.0% |
| GCTACTAATAGTAATGACCA+CGG | + | tig0018369:184252-184271 | Msa1365640:intron | 35.0% | |
| CTACTAATAGTAATGACCAC+GGG | + | tig0018369:184253-184272 | Msa1365640:intron | 35.0% | |
| ATTCTGAATAGAGGCTATAG+CGG | + | tig0018369:184457-184476 | Msa1365640:intron | 35.0% | |
| ACTGTTATCAATTGCGGATT+GGG | - | tig0018369:184530-184549 | None:intergenic | 35.0% | |
| CTTCGTATGAAAATGACTTG+AGG | + | tig0018369:184565-184584 | Msa1365640:intron | 35.0% | |
| CACATAATTCCTTCTAGTGT+AGG | + | tig0018369:184593-184612 | Msa1365640:intron | 35.0% | |
| AAACTCTTTCCTACACTAGA+AGG | - | tig0018369:184605-184624 | None:intergenic | 35.0% | |
| TTCTAGTGTAGGAAAGAGTT+TGG | + | tig0018369:184604-184623 | Msa1365640:intron | 35.0% | |
| TCTAGTGTAGGAAAGAGTTT+GGG | + | tig0018369:184605-184624 | Msa1365640:intron | 35.0% | |
| !! | ATAGTTGTACTTTTGGGAGA+CGG | + | tig0018369:184642-184661 | Msa1365640:intron | 35.0% |
| ! | GTTCTCGTCGAAAGTTTTTA+TGG | - | tig0018369:184706-184725 | None:intergenic | 35.0% |
| CTCAAGGAATAAGCAAAGAT+AGG | + | tig0018369:184748-184767 | Msa1365640:intron | 35.0% | |
| TAACTTATCCGGATACAGAA+AGG | - | tig0018369:184844-184863 | None:intergenic | 35.0% | |
| TCATATAACTACTCTTGCTG+TGG | + | tig0018369:185015-185034 | Msa1365640:intron | 35.0% | |
| GCTGTGGATTTACTCTTTAT+CGG | + | tig0018369:185031-185050 | Msa1365640:intron | 35.0% | |
| ! | CTTTGTGAAGTTAGAGTATC+TGG | + | tig0018369:185102-185121 | Msa1365640:CDS | 35.0% |
| TATCTTTACGAACATGCTTG+TGG | - | tig0018369:185271-185290 | None:intergenic | 35.0% | |
| TACGGTGTTTAAATCATGTG+TGG | + | tig0018369:185583-185602 | Msa1365640:intron | 35.0% | |
| ACGGTGTTTAAATCATGTGT+GGG | + | tig0018369:185584-185603 | Msa1365640:intron | 35.0% | |
| TTTAAATCATGTGTGGGATG+TGG | + | tig0018369:185590-185609 | Msa1365640:intron | 35.0% | |
| AACTCTTTGTACAAGAAGAG+TGG | + | tig0018369:185616-185635 | Msa1365640:intron | 35.0% | |
| ACCCCGTTGAATATTGAAAA+TGG | + | tig0018369:185658-185677 | Msa1365640:intron | 35.0% | |
| !! | AAAGGTATCGAAAAATGCGA+TGG | - | tig0018369:185852-185871 | None:intergenic | 35.0% |
| CTTGATGCAAATGCTTCTAA+AGG | - | tig0018369:185870-185889 | None:intergenic | 35.0% | |
| TATCTCTGAATGATGTCAGA+AGG | - | tig0018369:186174-186193 | None:intergenic | 35.0% | |
| ATTTGCCCCAAAAGTCATTT+CGG | + | tig0018369:186310-186329 | Msa1365640:intron | 35.0% | |
| TTTCGGTCTCTAATTGTATG+TGG | + | tig0018369:186414-186433 | Msa1365640:intron | 35.0% | |
| TTCTTAATGATGCAGAAGTG+TGG | + | tig0018369:186633-186652 | Msa1365640:intron | 35.0% | |
| AAGTGAGTTGTAATGAACCT+CGG | - | tig0018369:186672-186691 | None:intergenic | 35.0% | |
| !! | TAATAGAGGATCGGTTTTAG+TGG | - | tig0018369:186717-186736 | None:intergenic | 35.0% |
| GCTTATGCTTAATAGAGGAT+CGG | - | tig0018369:186726-186745 | None:intergenic | 35.0% | |
| !! | AAGGTTGATGGAAGAAGACA+CGG | - | tig0018369:182283-182302 | None:intergenic | 40.0% |
| ATGAATGGGTGTGATGAAGA+AGG | - | tig0018369:182403-182422 | None:intergenic | 40.0% | |
| GATTTGAACAATGTCCGTTG+AGG | + | tig0018369:183106-183125 | Msa1365640:intron | 40.0% | |
| ! | GTTTGACTTTGTCACCTCAA+CGG | - | tig0018369:183123-183142 | None:intergenic | 40.0% |
| GGAAGACAGACTCAAAATTG+GGG | + | tig0018369:183364-183383 | Msa1365640:CDS | 40.0% | |
| GATGATTGCTCTTGTGCTAT+CGG | + | tig0018369:183447-183466 | Msa1365640:CDS | 40.0% | |
| ACCAACTGCTCCATCTAAAT+TGG | - | tig0018369:183482-183501 | None:intergenic | 40.0% | |
| ATTTAGATGGAGCAGTTGGT+CGG | + | tig0018369:183482-183501 | Msa1365640:CDS | 40.0% | |
| GGAGCATAACAGAAAAAGCA+GGG | - | tig0018369:183543-183562 | None:intergenic | 40.0% | |
| TGGAGCATAACAGAAAAAGC+AGG | - | tig0018369:183544-183563 | None:intergenic | 40.0% | |
| ATGTGCTTTAACCCGATAGT+AGG | + | tig0018369:183848-183867 | Msa1365640:intron | 40.0% | |
| TGTGCTTTAACCCGATAGTA+GGG | + | tig0018369:183849-183868 | Msa1365640:intron | 40.0% | |
| TGTATGGTCATCCCTACTAT+CGG | - | tig0018369:183863-183882 | None:intergenic | 40.0% | |
| CTTAAGATCGGTTAATGGTG+GGG | - | tig0018369:183896-183915 | None:intergenic | 40.0% | |
| CTCTTAAGATCGGTTAATGG+TGG | - | tig0018369:183898-183917 | None:intergenic | 40.0% | |
| CACCATTAACCGATCTTAAG+AGG | + | tig0018369:183896-183915 | Msa1365640:intron | 40.0% | |
| TGCGAGTATTCACCCAAAAA+GGG | - | tig0018369:183969-183988 | None:intergenic | 40.0% | |
| !! | GCACATCCCTTTTCTGAAAA+GGG | + | tig0018369:183986-184005 | Msa1365640:intron | 40.0% |
| !! | CACATCCCTTTTCTGAAAAG+GGG | + | tig0018369:183987-184006 | Msa1365640:intron | 40.0% |
| !! | TGGGGATGAAGGTATTTATG+CGG | - | tig0018369:184097-184116 | None:intergenic | 40.0% |
| ! | GTCATTTATAGTGGGGATGA+AGG | - | tig0018369:184108-184127 | None:intergenic | 40.0% |
| TACTGGCGTCATTTATAGTG+GGG | - | tig0018369:184115-184134 | None:intergenic | 40.0% | |
| CATACTGGCGTCATTTATAG+TGG | - | tig0018369:184117-184136 | None:intergenic | 40.0% | |
| CACTATAAATGACGCCAGTA+TGG | + | tig0018369:184115-184134 | Msa1365640:CDS | 40.0% | |
| ! | AGTTATCGTCTATGCCCTTT+TGG | + | tig0018369:184219-184238 | Msa1365640:intron | 40.0% |
| AGCCCCAAAATTAACAACAC+TGG | - | tig0018369:184368-184387 | None:intergenic | 40.0% | |
| GCTATAGCACTGTTCTATAG+CGG | + | tig0018369:184481-184500 | Msa1365640:intron | 40.0% | |
| ! | CTGTTATCAATTGCGGATTG+GGG | - | tig0018369:184529-184548 | None:intergenic | 40.0% |
| CACTGTTATCAATTGCGGAT+TGG | - | tig0018369:184531-184550 | None:intergenic | 40.0% | |
| CATTTCTCTTACGACTTGTG+AGG | - | tig0018369:184785-184804 | None:intergenic | 40.0% | |
| CTCACAAGTCGTAAGAGAAA+TGG | + | tig0018369:184783-184802 | Msa1365640:intron | 40.0% | |
| ! | GAAGTTAGAGTATCTGGAGA+TGG | + | tig0018369:185108-185127 | Msa1365640:CDS | 40.0% |
| ATCTGGAGATGGAAATTGTC+AGG | + | tig0018369:185119-185138 | Msa1365640:CDS | 40.0% | |
| CAGGTAAGTTGTGCTTATCT+TGG | + | tig0018369:185299-185318 | Msa1365640:intron | 40.0% | |
| CTTATCTTGGTTGTGTGCAA+TGG | + | tig0018369:185312-185331 | Msa1365640:intron | 40.0% | |
| AACAAGATATAACAGCGGTG+AGG | - | tig0018369:186248-186267 | None:intergenic | 40.0% | |
| AGCAACAGTTCATTCGATGA+GGG | - | tig0018369:186337-186356 | None:intergenic | 40.0% | |
| ACAAACCAAGGAGGAAACAT+TGG | + | tig0018369:186802-186821 | Msa1365640:CDS | 40.0% | |
| AACAACCAATGTTTCCTCCT+TGG | - | tig0018369:186810-186829 | None:intergenic | 40.0% | |
| AGAAGATGTAGTGTCGTGTA+TGG | + | tig0018369:186832-186851 | Msa1365640:exon | 40.0% | |
| GAAGAAGACACGGTAGTAGT+TGG | - | tig0018369:182273-182292 | None:intergenic | 45.0% | |
| AATGGGTGTGATGAAGAAGG+AGG | - | tig0018369:182400-182419 | None:intergenic | 45.0% | |
| AACCTGTGAGCGATTGTGTT+GGG | - | tig0018369:182433-182452 | None:intergenic | 45.0% | |
| AAACCTGTGAGCGATTGTGT+TGG | - | tig0018369:182434-182453 | None:intergenic | 45.0% | |
| AAACTACGAAGCACGTGCAT+TGG | - | tig0018369:183033-183052 | None:intergenic | 45.0% | |
| ! | TGTTGTAGGGTTATTGGCTG+TGG | + | tig0018369:183277-183296 | Msa1365640:intron | 45.0% |
| ! | ATTGGCTGTGGATTGTGTTG+AGG | + | tig0018369:183289-183308 | Msa1365640:five_prime_UTR | 45.0% |
| AACTTCGCTTAGTAGTCAGC+AGG | + | tig0018369:183408-183427 | Msa1365640:CDS | 45.0% | |
| GCCAATTTAGATGGAGCAGT+TGG | + | tig0018369:183478-183497 | Msa1365640:CDS | 45.0% | |
| GAAAAAGCAGGGATTCCTAC+CGG | - | tig0018369:183532-183551 | None:intergenic | 45.0% | |
| TAGCCCGAGTGATCTTACAT+AGG | + | tig0018369:183801-183820 | Msa1365640:intron | 45.0% | |
| GTATGGTCATCCCTACTATC+GGG | - | tig0018369:183862-183881 | None:intergenic | 45.0% | |
| GCCCTCTTAAGATCGGTTAA+TGG | - | tig0018369:183901-183920 | None:intergenic | 45.0% | |
| TGCTAGCCAACTCTAGCAAT+AGG | + | tig0018369:183924-183943 | Msa1365640:intron | 45.0% | |
| GCTAGCCAACTCTAGCAATA+GGG | + | tig0018369:183925-183944 | Msa1365640:intron | 45.0% | |
| CTCAACCCTATTGCTAGAGT+TGG | - | tig0018369:183933-183952 | None:intergenic | 45.0% | |
| TATTCACCCAAAAAGGGGCA+GGG | - | tig0018369:183963-183982 | None:intergenic | 45.0% | |
| GCGAGTATTCACCCAAAAAG+GGG | - | tig0018369:183968-183987 | None:intergenic | 45.0% | |
| GTGCGAGTATTCACCCAAAA+AGG | - | tig0018369:183970-183989 | None:intergenic | 45.0% | |
| !! | CGCACATCCCTTTTCTGAAA+AGG | + | tig0018369:183985-184004 | Msa1365640:intron | 45.0% |
| !! | ATCCCTTTTCTGAAAAGGGG+TGG | + | tig0018369:183990-184009 | Msa1365640:intron | 45.0% |
| !! | TCCCTTTTCTGAAAAGGGGT+GGG | + | tig0018369:183991-184010 | Msa1365640:intron | 45.0% |
| ! | TCCCACCCCTTTTCAGAAAA+GGG | - | tig0018369:183995-184014 | None:intergenic | 45.0% |
| !! | GGGATGAAGGTATTTATGCG+GGG | - | tig0018369:184095-184114 | None:intergenic | 45.0% |
| !! | GGGGATGAAGGTATTTATGC+GGG | - | tig0018369:184096-184115 | None:intergenic | 45.0% |
| GGGCATAGACGATAACTTCA+AGG | - | tig0018369:184216-184235 | None:intergenic | 45.0% | |
| AAGTGCATCATTTCTTCCCG+TGG | - | tig0018369:184272-184291 | None:intergenic | 45.0% | |
| !! | TTGCGGATTGGGGAAAATAG+CGG | - | tig0018369:184519-184538 | None:intergenic | 45.0% |
| TTTCGACGAGAACAGCATAC+TGG | + | tig0018369:184713-184732 | Msa1365640:intron | 45.0% | |
| CTGGCATTCTTCAAAGCTCA+AGG | + | tig0018369:184732-184751 | Msa1365640:intron | 45.0% | |
| AACAGCGACCTTTCTGTATC+CGG | + | tig0018369:184833-184852 | Msa1365640:intron | 45.0% | |
| ! | ACAGCTGATCTGAAAGTGCA+CGG | - | tig0018369:185232-185251 | None:intergenic | 45.0% |
| CACTTTCAGATCAGCTGTAC+CGG | + | tig0018369:185234-185253 | Msa1365640:CDS | 45.0% | |
| AGGAACGGTGATCTTTAAGC+TGG | - | tig0018369:185724-185743 | None:intergenic | 45.0% | |
| CTTGTGCAGATCTGGAGAAT+GGG | + | tig0018369:185909-185928 | Msa1365640:intron | 45.0% | |
| TTGTGCAGATCTGGAGAATG+GGG | + | tig0018369:185910-185929 | Msa1365640:intron | 45.0% | |
| AAGCTGCCTGTAAGGTAACA+TGG | - | tig0018369:185939-185958 | None:intergenic | 45.0% | |
| CTTATCAGAAGCTGCCTGTA+AGG | - | tig0018369:185947-185966 | None:intergenic | 45.0% | |
| CTTACAGGCAGCTTCTGATA+AGG | + | tig0018369:185945-185964 | Msa1365640:CDS | 45.0% | |
| GCAACAGTTCATTCGATGAG+GGG | - | tig0018369:186336-186355 | None:intergenic | 45.0% | |
| CAGCAACAGTTCATTCGATG+AGG | - | tig0018369:186338-186357 | None:intergenic | 45.0% | |
| !! | TAAAAAATAAAAAAAATGAT+GGG | - | tig0018369:182556-182575 | None:intergenic | 5.0% |
| !! | ATAAAAAATAAAAAAAATGA+TGG | - | tig0018369:182557-182576 | None:intergenic | 5.0% |
| !! | TAGTTTATTATTATTAATAA+CGG | + | tig0018369:183047-183066 | Msa1365640:intron | 5.0% |
| ATCCCAACACAATCGCTCAC+AGG | + | tig0018369:182428-182447 | Msa1365640:five_prime_UTR | 50.0% | |
| TCTGACATGCTCACACACGT+TGG | - | tig0018369:182918-182937 | None:intergenic | 50.0% | |
| TACTGAGCTGACACACCTCA+TGG | + | tig0018369:183149-183168 | Msa1365640:intron | 50.0% | |
| GAACAGGTGCCAAGTTCGAA+AGG | - | tig0018369:183510-183529 | None:intergenic | 50.0% | |
| TTCGAACTTGGCACCTGTTC+CGG | + | tig0018369:183510-183529 | Msa1365640:CDS | 50.0% | |
| TGCGCTTTCATGTAAGCTCG+TGG | + | tig0018369:183698-183717 | Msa1365640:intron | 50.0% | |
| GATCACTCGGGCTAAAAGTG+CGG | - | tig0018369:183795-183814 | None:intergenic | 50.0% | |
| ! | AAGATCGGTTAATGGTGGGG+CGG | - | tig0018369:183893-183912 | None:intergenic | 50.0% |
| !! | AGCACTGGCCCTCTTAAGAT+CGG | - | tig0018369:183908-183927 | None:intergenic | 50.0% |
| TTGCTAGAGTTGGCTAGCAC+TGG | - | tig0018369:183923-183942 | None:intergenic | 50.0% | |
| ! | AATCTCACCCTGCCCCTTTT+TGG | + | tig0018369:183953-183972 | Msa1365640:intron | 50.0% |
| ! | ATCTCACCCTGCCCCTTTTT+GGG | + | tig0018369:183954-183973 | Msa1365640:intron | 50.0% |
| GTATTCACCCAAAAAGGGGC+AGG | - | tig0018369:183964-183983 | None:intergenic | 50.0% | |
| ! | CTCCCACCCCTTTTCAGAAA+AGG | - | tig0018369:183996-184015 | None:intergenic | 50.0% |
| !! | CTTTTCTGAAAAGGGGTGGG+AGG | + | tig0018369:183994-184013 | Msa1365640:intron | 50.0% |
| ! | AAAGGGGTGGGAGGAGTATA+TGG | + | tig0018369:184003-184022 | Msa1365640:intron | 50.0% |
| CAGACGCTGATGATCCATAC+TGG | - | tig0018369:184132-184151 | None:intergenic | 50.0% | |
| ATCATCAGCGTCTGCTACAG+AGG | + | tig0018369:184138-184157 | Msa1365640:CDS | 50.0% | |
| ! | GAAAGTGCACGGAACTGCAA+CGG | - | tig0018369:185221-185240 | None:intergenic | 50.0% |
| CGAACATGCTTGTGGTGTTC+AGG | - | tig0018369:185263-185282 | None:intergenic | 50.0% | |
| AGCAGGACGTCTTTGCTCTA+AGG | - | tig0018369:185500-185519 | None:intergenic | 50.0% | |
| TCTGCACAAGGTCGAAGAGA+AGG | - | tig0018369:185899-185918 | None:intergenic | 50.0% | |
| TCTTCGACCTTGTGCAGATC+TGG | + | tig0018369:185901-185920 | Msa1365640:intron | 50.0% | |
| CCATTCTCCAGATCTGCACA+AGG | - | tig0018369:185911-185930 | None:intergenic | 50.0% | |
| CCTTGTGCAGATCTGGAGAA+TGG | + | tig0018369:185908-185927 | Msa1365640:intron | 50.0% | |
| GGGTGACCATGTTACCTTAC+AGG | + | tig0018369:185930-185949 | Msa1365640:CDS | 50.0% | |
| ! | AGGGGCCGAAATGACTTTTG+GGG | - | tig0018369:186318-186337 | None:intergenic | 50.0% |
| ! | GAGGGGCCGAAATGACTTTT+GGG | - | tig0018369:186319-186338 | None:intergenic | 50.0% |
| ! | TGAGGGGCCGAAATGACTTT+TGG | - | tig0018369:186320-186339 | None:intergenic | 50.0% |
| ! | CAGAAGTGTGGTTGAGCTTC+TGG | + | tig0018369:186645-186664 | Msa1365640:intron | 50.0% |
| CACCAATCCAGCACAAACCA+AGG | + | tig0018369:186790-186809 | Msa1365640:CDS | 50.0% | |
| !! | CTCCTTGGTTTGTGCTGGAT+TGG | - | tig0018369:186795-186814 | None:intergenic | 50.0% |
| CAATCCAGCACAAACCAAGG+AGG | + | tig0018369:186793-186812 | Msa1365640:CDS | 50.0% | |
| !! | GTTTCCTCCTTGGTTTGTGC+TGG | - | tig0018369:186800-186819 | None:intergenic | 50.0% |
| GTCGTGTATGGCTCATCGAA+TGG | + | tig0018369:186844-186863 | Msa1365640:three_prime_UTR | 50.0% | |
| ATATTAGGAGCAAACCGGCG+CGG | + | tig0018369:187000-187019 | Msa1365640:three_prime_UTR | 50.0% | |
| AACTTGGCACCTGTTCCGGT+AGG | + | tig0018369:183514-183533 | Msa1365640:intron | 55.0% | |
| GTGGGGCGGGATAAACTGTA+TGG | - | tig0018369:183879-183898 | None:intergenic | 55.0% | |
| ! | AGATCGGTTAATGGTGGGGC+GGG | - | tig0018369:183892-183911 | None:intergenic | 55.0% |
| TTTGGGAGACGGTGCAGTTG+AGG | + | tig0018369:184653-184672 | Msa1365640:intron | 55.0% | |
| GCTTGTGGTGTTCAGGTGAC+CGG | - | tig0018369:185256-185275 | None:intergenic | 55.0% | |
| TATTAGGAGCAAACCGGCGC+GGG | + | tig0018369:187001-187020 | Msa1365640:three_prime_UTR | 55.0% | |
| ACAAGTGATTTCTCCCGCGC+CGG | - | tig0018369:187017-187036 | None:intergenic | 55.0% | |
| ACACCAGACACACGATGCGC+CGG | - | tig0018369:182895-182914 | None:intergenic | 60.0% | |
| TGGTCGGCGCCTTTCGAACT+TGG | + | tig0018369:183498-183517 | Msa1365640:CDS | 60.0% | |
| GCAGGGATTCCTACCGGAAC+AGG | - | tig0018369:183526-183545 | None:intergenic | 60.0% | |
| GTGGTTGAGCTTCTGGTCCG+AGG | + | tig0018369:186652-186671 | Msa1365640:CDS | 60.0% | |
| CGCTGCGGTGCTTGGTACAG+TGG | - | tig0018369:186217-186236 | None:intergenic | 65.0% | |
| ! | CTGTACCAAGCACCGCAGCG+CGG | + | tig0018369:186217-186236 | Msa1365640:CDS | 65.0% |
| TCTTACCGCGCTGCGGTGCT+TGG | - | tig0018369:186225-186244 | None:intergenic | 65.0% | |
| GGTGAGGTCTTACCGCGCTG+CGG | - | tig0018369:186232-186251 | None:intergenic | 65.0% | |
| GCTCCGGCGCATCGTGTGTC+TGG | + | tig0018369:182889-182908 | Msa1365640:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018369 | gene | 182263 | 187216 | 182263 | ID=Msa1365640;Name=Msa1365640 |
| tig0018369 | mRNA | 182263 | 187216 | 182263 | ID=Msa1365640-mRNA-1;Parent=Msa1365640;Name=Msa1365640-mRNA-1;_AED=0.14;_eAED=0.14;_QI=257|0.88|0.9|1|0.88|0.8|10|383|238 |
| tig0018369 | exon | 182263 | 182449 | 182263 | ID=Msa1365640-mRNA-1:exon:14666;Parent=Msa1365640-mRNA-1 |
| tig0018369 | exon | 183285 | 183531 | 183285 | ID=Msa1365640-mRNA-1:exon:14667;Parent=Msa1365640-mRNA-1 |
| tig0018369 | exon | 184086 | 184159 | 184086 | ID=Msa1365640-mRNA-1:exon:14668;Parent=Msa1365640-mRNA-1 |
| tig0018369 | exon | 185086 | 185140 | 185086 | ID=Msa1365640-mRNA-1:exon:14669;Parent=Msa1365640-mRNA-1 |
| tig0018369 | exon | 185227 | 185301 | 185227 | ID=Msa1365640-mRNA-1:exon:14670;Parent=Msa1365640-mRNA-1 |
| tig0018369 | exon | 185725 | 185798 | 185725 | ID=Msa1365640-mRNA-1:exon:14671;Parent=Msa1365640-mRNA-1 |
| tig0018369 | exon | 185918 | 185990 | 185918 | ID=Msa1365640-mRNA-1:exon:14672;Parent=Msa1365640-mRNA-1 |
| tig0018369 | exon | 186154 | 186238 | 186154 | ID=Msa1365640-mRNA-1:exon:14673;Parent=Msa1365640-mRNA-1 |
| tig0018369 | exon | 186648 | 186704 | 186648 | ID=Msa1365640-mRNA-1:exon:14674;Parent=Msa1365640-mRNA-1 |
| tig0018369 | exon | 186787 | 187216 | 186787 | ID=Msa1365640-mRNA-1:exon:14675;Parent=Msa1365640-mRNA-1 |
| tig0018369 | five_prime_UTR | 182263 | 182449 | 182263 | ID=Msa1365640-mRNA-1:five_prime_utr;Parent=Msa1365640-mRNA-1 |
| tig0018369 | five_prime_UTR | 183285 | 183354 | 183285 | ID=Msa1365640-mRNA-1:five_prime_utr;Parent=Msa1365640-mRNA-1 |
| tig0018369 | CDS | 183355 | 183531 | 183355 | ID=Msa1365640-mRNA-1:cds;Parent=Msa1365640-mRNA-1 |
| tig0018369 | CDS | 184086 | 184159 | 184086 | ID=Msa1365640-mRNA-1:cds;Parent=Msa1365640-mRNA-1 |
| tig0018369 | CDS | 185086 | 185140 | 185086 | ID=Msa1365640-mRNA-1:cds;Parent=Msa1365640-mRNA-1 |
| tig0018369 | CDS | 185227 | 185301 | 185227 | ID=Msa1365640-mRNA-1:cds;Parent=Msa1365640-mRNA-1 |
| tig0018369 | CDS | 185725 | 185798 | 185725 | ID=Msa1365640-mRNA-1:cds;Parent=Msa1365640-mRNA-1 |
| tig0018369 | CDS | 185918 | 185990 | 185918 | ID=Msa1365640-mRNA-1:cds;Parent=Msa1365640-mRNA-1 |
| tig0018369 | CDS | 186154 | 186238 | 186154 | ID=Msa1365640-mRNA-1:cds;Parent=Msa1365640-mRNA-1 |
| tig0018369 | CDS | 186648 | 186704 | 186648 | ID=Msa1365640-mRNA-1:cds;Parent=Msa1365640-mRNA-1 |
| tig0018369 | CDS | 186787 | 186833 | 186787 | ID=Msa1365640-mRNA-1:cds;Parent=Msa1365640-mRNA-1 |
| tig0018369 | three_prime_UTR | 186834 | 187216 | 186834 | ID=Msa1365640-mRNA-1:three_prime_utr;Parent=Msa1365640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
