AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1407710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407710 MtrunA17_Chr8g0382151 94.771 153 8 0 1 153 1 153 1.25e-89 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407710 AT5G65220.1 60.510 157 57 2 1 152 1 157 1.03e-55 173

Find 48 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCACTGCCTTCAAATT+AGG 0.189849 tig0023324:-396 Msa1407710:three_prime_UTR
CTCCATCTTTAGTGAAGCTT+CGG 0.343778 tig0023324:-662 Msa1407710:CDS
AGGATGAAGTGAAGTAAGAT+AGG 0.359503 tig0023324:-3487 Msa1407710:five_prime_UTR
CGAAGAGGTTGTTGACCTTA+AGG 0.368840 tig0023324:-3169 Msa1407710:CDS
AGAGAGATCGAGGAGGGTAT+TGG 0.373075 tig0023324:-744 Msa1407710:CDS
GAAGAGGTTGTTGACCTTAA+GGG 0.407443 tig0023324:-3168 Msa1407710:CDS
AACCTCTTCGTTGATTTGTT+CGG 0.413592 tig0023324:+3182 None:intergenic
TCCATCTTTAGTGAAGCTTC+GGG 0.422468 tig0023324:-661 Msa1407710:CDS
TAACCATGTCTCTATTCTTA+CGG 0.436101 tig0023324:+428 None:intergenic
AAAATGATTACCTAATTTGA+AGG 0.439015 tig0023324:+386 None:intergenic
CAATTCAAAACCTCCTTCAA+TGG 0.450472 tig0023324:-3324 Msa1407710:CDS
GCTGGAATTGTGCACGTGTT+TGG 0.452104 tig0023324:+3285 None:intergenic
AGAAGCCGCTGAAGCTGAAA+AGG 0.454847 tig0023324:-622 Msa1407710:CDS
GCTGAAAAGGCTGCATGAGC+TGG 0.463787 tig0023324:-609 Msa1407710:exon
AAGAGGAGTTGCGCTCATAA+AGG 0.464581 tig0023324:-3507 Msa1407710:five_prime_UTR
TCGAGGAGGGTATTGGTAAG+AGG 0.464624 tig0023324:-737 Msa1407710:CDS
TCCCGAAGCTTCACTAAAGA+TGG 0.465433 tig0023324:+660 None:intergenic
GAAGCGGTGTGTTTCGTCGC+TGG 0.470689 tig0023324:+3267 None:intergenic
CTCTTCGTTGATTTGTTCGG+TGG 0.475609 tig0023324:+3185 None:intergenic
TTTAGTGAAGCTTCGGGAGG+AGG 0.477310 tig0023324:-655 Msa1407710:CDS
TTCGGTCTCAGTTGTGATGA+TGG 0.497091 tig0023324:-3247 Msa1407710:CDS
GCATGAGCAACTCTCCCTTA+AGG 0.500570 tig0023324:+3154 None:intergenic
AAGTGAAGTAAGATAGGGTG+TGG 0.502314 tig0023324:-3481 Msa1407710:five_prime_UTR
AACCTATGTTCTTCCTGTCA+AGG 0.503668 tig0023324:-475 Msa1407710:three_prime_UTR
ACGCATGCGACGGAAATCAC+TGG 0.508419 tig0023324:+3095 None:intergenic
AGAAGAAGAAGGTGAAGTAA+CGG 0.515793 tig0023324:+3377 None:intergenic
GGATGAAGTGAAGTAAGATA+GGG 0.523185 tig0023324:-3486 Msa1407710:five_prime_UTR
CATTACGAGCGGATTTCTGA+AGG 0.525516 tig0023324:+3127 None:intergenic
AGCGACGAAACACACCGCTT+CGG 0.532669 tig0023324:-3265 Msa1407710:CDS
TCGCTTGCTTACTGTAAAGC+GGG 0.534202 tig0023324:-769 Msa1407710:CDS
ACGTAGACGAATGCCATTGA+AGG 0.534298 tig0023324:+3311 None:intergenic
TTTCCGTCGCATGCGTAAGA+CGG 0.562303 tig0023324:-3088 Msa1407710:intron
CTCGCTTGCTTACTGTAAAG+CGG 0.564676 tig0023324:-770 Msa1407710:CDS
AGCTTCACTAAAGATGGAGG+TGG 0.573712 tig0023324:+666 None:intergenic
AACCTTGACAGGAAGAACAT+AGG 0.601515 tig0023324:+473 None:intergenic
TAGACGAATGCCATTGAAGG+AGG 0.601615 tig0023324:+3314 None:intergenic
ATCTTTAGTGAAGCTTCGGG+AGG 0.606878 tig0023324:-658 Msa1407710:CDS
CGGGAAAGAGAGATCGAGGA+GGG 0.618037 tig0023324:-750 Msa1407710:CDS
CGAAGCTTCACTAAAGATGG+AGG 0.634671 tig0023324:+663 None:intergenic
CACCGAACAAATCAACGAAG+AGG 0.638523 tig0023324:-3184 Msa1407710:CDS
AAAGCGGGAAAGAGAGATCG+AGG 0.640382 tig0023324:-754 Msa1407710:CDS
AGATAAAACATAAGAGAGCG+CGG 0.644926 tig0023324:-3420 Msa1407710:five_prime_UTR
ATACCGTCTTACGCATGCGA+CGG 0.651580 tig0023324:+3085 None:intergenic
GGACTTAAACTCATTACGAG+CGG 0.659914 tig0023324:+3116 None:intergenic
GCGGGAAAGAGAGATCGAGG+AGG 0.693334 tig0023324:-751 Msa1407710:CDS
CATCACAACTGAGACCGAAG+CGG 0.693580 tig0023324:+3251 None:intergenic
TAACCGTAAGAATAGAGACA+TGG 0.704669 tig0023324:-431 Msa1407710:three_prime_UTR
AAGAAGGTGAAGTAACGGAG+AGG 0.716426 tig0023324:+3382 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGCTTAATTAAATTTTT+AGG - tig0023324:865-884 Msa1407710:intron 10.0%
!! ATTAAAACTAAAAATAAATG+GGG + tig0023324:2974-2993 None:intergenic 10.0%
!! AAAAAAGCAATATAATGAAA+AGG + tig0023324:2192-2211 None:intergenic 15.0%
!!! TAATTTTTTTTTTTCCGTTT+CGG + tig0023324:2464-2483 None:intergenic 15.0%
!! TTAAAACTAAAAATAAATGG+GGG + tig0023324:2973-2992 None:intergenic 15.0%
!!! ATCTGAAGTTATTATTATTA+GGG + tig0023324:3001-3020 None:intergenic 15.0%
!! TTAATACATTAGTAGAGTTA+GGG - tig0023324:938-957 Msa1407710:intron 20.0%
!! ACAATATTCAAAATTGTCAA+GGG - tig0023324:1228-1247 Msa1407710:intron 20.0%
!!! TCTTAAGTTTGAATCTTTTA+TGG - tig0023324:1721-1740 Msa1407710:intron 20.0%
!! ATAATCTAATCCAATGTAAA+CGG - tig0023324:1855-1874 Msa1407710:intron 20.0%
!!! TATCTTTTACTTTAGTTGTT+TGG - tig0023324:2028-2047 Msa1407710:intron 20.0%
!!! ACAACAATTGAATTTTATTG+TGG + tig0023324:2272-2291 None:intergenic 20.0%
!! ACAATAAAATTCAATTGTTG+TGG - tig0023324:2271-2290 Msa1407710:intron 20.0%
!! ATCAGAACTGAAATTTAAAT+TGG - tig0023324:2353-2372 Msa1407710:intron 20.0%
!! GAAACGGAAAAAAAAAAATT+AGG - tig0023324:2463-2482 Msa1407710:intron 20.0%
!!! TCAATTCAATTTTTATTGGT+GGG + tig0023324:2810-2829 None:intergenic 20.0%
!!! CATCTGAAGTTATTATTATT+AGG + tig0023324:3002-3021 None:intergenic 20.0%
!!! AGTCATTGTTTTTAATGTTT+TGG - tig0023324:3327-3346 Msa1407710:CDS 20.0%
!! AAAATGATTACCTAATTTGA+AGG + tig0023324:3483-3502 None:intergenic 20.0%
!!! GTTTTGAATTGTAATGGTTT+TGG + tig0023324:533-552 None:intergenic 25.0%
! CTCTACTAATGTATTAAGAT+TGG + tig0023324:935-954 None:intergenic 25.0%
! CTTAATACATTAGTAGAGTT+AGG - tig0023324:937-956 Msa1407710:intron 25.0%
! TAATACATTAGTAGAGTTAG+GGG - tig0023324:939-958 Msa1407710:intron 25.0%
! TGTGAAATTAGGAATGAATA+GGG - tig0023324:972-991 Msa1407710:intron 25.0%
! TTGTAATTGTCATTGTTCTA+TGG - tig0023324:1058-1077 Msa1407710:intron 25.0%
! CACAATATTCAAAATTGTCA+AGG - tig0023324:1227-1246 Msa1407710:intron 25.0%
! CAATATTCAAAATTGTCAAG+GGG - tig0023324:1229-1248 Msa1407710:intron 25.0%
! GAAATATTGCTATGTTAGAA+TGG - tig0023324:1257-1276 Msa1407710:intron 25.0%
! TGTCTATTATACCAAACTTA+GGG - tig0023324:1339-1358 Msa1407710:intron 25.0%
!! TTCAAATTTTACCCTAAGTT+TGG + tig0023324:1353-1372 None:intergenic 25.0%
! AAACTTAGGGTAAAATTTGA+AGG - tig0023324:1352-1371 Msa1407710:intron 25.0%
! GAAATGAACATTGAAATGAA+AGG - tig0023324:1403-1422 Msa1407710:intron 25.0%
!! TATTAGCACTTGTTAACAAA+TGG + tig0023324:1804-1823 None:intergenic 25.0%
!! TTTCAGTTTTCTTTCTTCTT+TGG + tig0023324:1940-1959 None:intergenic 25.0%
! AAGAAGAAAGAAAACTGAAA+AGG - tig0023324:1940-1959 Msa1407710:intron 25.0%
! ATACAAATGAGTGTAAGAAT+AGG + tig0023324:2106-2125 None:intergenic 25.0%
! AACATCCATGAAAATAGAAA+AGG + tig0023324:2297-2316 None:intergenic 25.0%
! AACTCTGATAAAATGATGAT+GGG + tig0023324:2782-2801 None:intergenic 25.0%
!! CTCAATTCAATTTTTATTGG+TGG + tig0023324:2811-2830 None:intergenic 25.0%
! CACCAATAAAAATTGAATTG+AGG - tig0023324:2809-2828 Msa1407710:intron 25.0%
!! CTCCTCAATTCAATTTTTAT+TGG + tig0023324:2814-2833 None:intergenic 25.0%
! AAAAATTGAATTGAGGAGAA+TGG - tig0023324:2816-2835 Msa1407710:intron 25.0%
! AAAATTGAATTGAGGAGAAT+GGG - tig0023324:2817-2836 Msa1407710:intron 25.0%
!! TTTAGAATGTTTAGATTCCA+TGG - tig0023324:2883-2902 Msa1407710:intron 25.0%
! AAATGCACACAATAGAAAAA+GGG - tig0023324:2916-2935 Msa1407710:intron 25.0%
!!! CATTGTTTTTAATGTTTTGG+TGG - tig0023324:3330-3349 Msa1407710:CDS 25.0%
!!! GAAAGTTTTGAAGAAGAAGA+AGG + tig0023324:503-522 None:intergenic 30.0%
!!! TTGTAATGGTTTTGGAAGAA+AGG + tig0023324:525-544 None:intergenic 30.0%
!!! AAGGAGGTTTTGAATTGTAA+TGG + tig0023324:539-558 None:intergenic 30.0%
CTGTGAAATTAGGAATGAAT+AGG - tig0023324:971-990 Msa1407710:intron 30.0%
!!! AGTCTTTGGTTTTGTGTATT+TGG + tig0023324:1156-1175 None:intergenic 30.0%
GTGTGTAATATGTAAGTCAT+AGG + tig0023324:1210-1229 None:intergenic 30.0%
TTGCTATGTTAGAATGGAAA+TGG - tig0023324:1263-1282 Msa1407710:intron 30.0%
! ACATCCCATTTGCATTATTT+TGG - tig0023324:1316-1335 Msa1407710:intron 30.0%
GACACCAAAATAATGCAAAT+GGG + tig0023324:1323-1342 None:intergenic 30.0%
AGACACCAAAATAATGCAAA+TGG + tig0023324:1324-1343 None:intergenic 30.0%
GTGTCTATTATACCAAACTT+AGG - tig0023324:1338-1357 Msa1407710:intron 30.0%
TAGTTGTTACTCATGTATTG+CGG - tig0023324:1488-1507 Msa1407710:intron 30.0%
!!! ACTTTTCAGGTATGGTATTT+CGG + tig0023324:1562-1581 None:intergenic 30.0%
ATTGAAATTGAACTGAAACC+AGG + tig0023324:1636-1655 None:intergenic 30.0%
ATTTCAATCAACCAATACGA+TGG - tig0023324:1648-1667 Msa1407710:intron 30.0%
ACATAGATTAAATCCATTGC+CGG - tig0023324:1697-1716 Msa1407710:intron 30.0%
AAAGATTCAAACTTAAGACC+CGG + tig0023324:1719-1738 None:intergenic 30.0%
! TCAGTTATTTCCGTTTACAT+TGG + tig0023324:1868-1887 None:intergenic 30.0%
AAATAACTGAACTGAAAACC+AGG - tig0023324:1878-1897 Msa1407710:intron 30.0%
! TTTTATTGTCCTCTGTTTTG+GGG + tig0023324:1914-1933 None:intergenic 30.0%
!! GTTTTATTGTCCTCTGTTTT+GGG + tig0023324:1915-1934 None:intergenic 30.0%
!!! AGTTTTATTGTCCTCTGTTT+TGG + tig0023324:1916-1935 None:intergenic 30.0%
! AAACTGAAAAGGTCAAGTTT+TGG - tig0023324:1951-1970 Msa1407710:intron 30.0%
ACTGAAACAAAGAATAAAGG+TGG + tig0023324:2169-2188 None:intergenic 30.0%
AGGACTGAAACAAAGAATAA+AGG + tig0023324:2172-2191 None:intergenic 30.0%
! TGAGTAAATCGTGATTTTGA+TGG + tig0023324:2217-2236 None:intergenic 30.0%
AGGAGATTAATCTATTATGC+TGG + tig0023324:2646-2665 None:intergenic 30.0%
ATAGTAAAGCAAACTGAAGT+AGG + tig0023324:2705-2724 None:intergenic 30.0%
GAACTCTGATAAAATGATGA+TGG + tig0023324:2783-2802 None:intergenic 30.0%
ATGTTTAGATTCCATGGTAA+AGG - tig0023324:2889-2908 Msa1407710:intron 30.0%
GAAATGCACACAATAGAAAA+AGG - tig0023324:2915-2934 Msa1407710:intron 30.0%
AATGCACACAATAGAAAAAG+GGG - tig0023324:2917-2936 Msa1407710:intron 30.0%
AAACTAAAAATAAATGGGGG+TGG + tig0023324:2970-2989 None:intergenic 30.0%
!!! CCATTTTTTATCAAGCTTTC+TGG + tig0023324:3159-3178 None:intergenic 30.0%
CCAGAAAGCTTGATAAAAAA+TGG - tig0023324:3156-3175 Msa1407710:CDS 30.0%
AAGACATAAAAAACCTTGAC+AGG + tig0023324:3407-3426 None:intergenic 30.0%
TAACCATGTCTCTATTCTTA+CGG + tig0023324:3441-3460 None:intergenic 30.0%
AGGATGAAGTGAAGTAAGAT+AGG - tig0023324:379-398 Msa1407710:three_prime_UTR 35.0%
GGATGAAGTGAAGTAAGATA+GGG - tig0023324:380-399 Msa1407710:three_prime_UTR 35.0%
AGATAAAACATAAGAGAGCG+CGG - tig0023324:446-465 Msa1407710:three_prime_UTR 35.0%
AGAAGAAGAAGGTGAAGTAA+CGG + tig0023324:492-511 None:intergenic 35.0%
CAATTCAAAACCTCCTTCAA+TGG - tig0023324:542-561 Msa1407710:three_prime_UTR 35.0%
!! AACCTCTTCGTTGATTTGTT+CGG + tig0023324:687-706 None:intergenic 35.0%
GAATGAGAGTCTGTGAAATT+AGG - tig0023324:961-980 Msa1407710:intron 35.0%
GGTTATGTTAGAGAAACAAC+TGG - tig0023324:1079-1098 Msa1407710:intron 35.0%
ACAAAACCAAAGACTCACTA+GGG - tig0023324:1161-1180 Msa1407710:intron 35.0%
TAGAATGGAAATGGAGAGAA+AGG - tig0023324:1272-1291 Msa1407710:intron 35.0%
!! AAGGCATCAGGATTTTTATC+TGG - tig0023324:1371-1390 Msa1407710:intron 35.0%
AACATTGAAATGAAAGGCCA+AGG - tig0023324:1409-1428 Msa1407710:intron 35.0%
ACATTGAAATGAAAGGCCAA+GGG - tig0023324:1410-1429 Msa1407710:intron 35.0%
GTTAACGAATTTGAATCCCT+TGG + tig0023324:1429-1448 None:intergenic 35.0%
!! ATTTCAGGTATGGTGTTTTC+TGG + tig0023324:1529-1548 None:intergenic 35.0%
AGAAAACACCATACCTGAAA+TGG - tig0023324:1528-1547 Msa1407710:intron 35.0%
GAAAACACCATACCTGAAAT+GGG - tig0023324:1529-1548 Msa1407710:intron 35.0%
AAAACACCATACCTGAAATG+GGG - tig0023324:1530-1549 Msa1407710:intron 35.0%
!!! CTTTTCAGGTATGGTATTTC+GGG + tig0023324:1561-1580 None:intergenic 35.0%
GAAATACCATACCTGAAAAG+TGG - tig0023324:1561-1580 Msa1407710:intron 35.0%
CATAGATTAAATCCATTGCC+GGG - tig0023324:1698-1717 Msa1407710:intron 35.0%
!! GTCCTCATTCTTTAGAGTTT+AGG - tig0023324:1750-1769 Msa1407710:intron 35.0%
! GACCTAAACTCTAAAGAATG+AGG + tig0023324:1755-1774 None:intergenic 35.0%
!! CTTTAGAGTTTAGGTCTTTG+AGG - tig0023324:1759-1778 Msa1407710:intron 35.0%
TGCTAATAGCTAACATAGCT+TGG - tig0023324:1816-1835 Msa1407710:intron 35.0%
GCTAATAGCTAACATAGCTT+GGG - tig0023324:1817-1836 Msa1407710:intron 35.0%
CTAATAGCTAACATAGCTTG+GGG - tig0023324:1818-1837 Msa1407710:intron 35.0%
! TGCAGCTAGTTTATGAAGAA+AGG + tig0023324:2007-2026 None:intergenic 35.0%
! TGTGGCCTTTTCTATTTTCA+TGG - tig0023324:2289-2308 Msa1407710:intron 35.0%
ACACTTGTCTACTGTTATCT+GGG + tig0023324:2432-2451 None:intergenic 35.0%
TACACTTGTCTACTGTTATC+TGG + tig0023324:2433-2452 None:intergenic 35.0%
AGATAACAGTAGACAAGTGT+AGG - tig0023324:2432-2451 Msa1407710:intron 35.0%
GATAACAGTAGACAAGTGTA+GGG - tig0023324:2433-2452 Msa1407710:intron 35.0%
AAATCACTTGAGCATTTGTG+GGG + tig0023324:2518-2537 None:intergenic 35.0%
GAAATCACTTGAGCATTTGT+GGG + tig0023324:2519-2538 None:intergenic 35.0%
ATGGAGACGAACATTAATGT+GGG + tig0023324:2566-2585 None:intergenic 35.0%
AATGGAGACGAACATTAATG+TGG + tig0023324:2567-2586 None:intergenic 35.0%
ACATTAATGTTCGTCTCCAT+TGG - tig0023324:2566-2585 Msa1407710:intron 35.0%
TGTGTTGCATAAAGTGGAAA+AGG + tig0023324:2735-2754 None:intergenic 35.0%
TGCATTTCTTTCCTTTACCA+TGG + tig0023324:2903-2922 None:intergenic 35.0%
TAGAAAGCTTTACCAACAAG+CGG - tig0023324:3026-3045 Msa1407710:intron 35.0%
GTAATCATTCACCCAAAAGA+AGG + tig0023324:3055-3074 None:intergenic 35.0%
TAACCGTAAGAATAGAGACA+TGG - tig0023324:3435-3454 Msa1407710:five_prime_UTR 35.0%
CAATTCACTGCCTTCAAATT+AGG - tig0023324:3470-3489 Msa1407710:five_prime_UTR 35.0%
AAGTGAAGTAAGATAGGGTG+TGG - tig0023324:385-404 Msa1407710:three_prime_UTR 40.0%
! GATGATGGCAAAAAGAGAAG+AGG - tig0023324:634-653 Msa1407710:CDS 40.0%
GAAGAGGTTGTTGACCTTAA+GGG - tig0023324:698-717 Msa1407710:CDS 40.0%
GGACTTAAACTCATTACGAG+CGG + tig0023324:753-772 None:intergenic 40.0%
AGTGCAAGAGACTTGTGTTT+AGG - tig0023324:1120-1139 Msa1407710:intron 40.0%
GTGCAAGAGACTTGTGTTTA+GGG - tig0023324:1121-1140 Msa1407710:intron 40.0%
CACAAAACCAAAGACTCACT+AGG - tig0023324:1160-1179 Msa1407710:intron 40.0%
TGGAAATGGAGAGAAAGGAA+AGG - tig0023324:1277-1296 Msa1407710:intron 40.0%
TGCAAATGGGATGTAGACAT+AGG + tig0023324:1310-1329 None:intergenic 40.0%
!! GGGTAAAATTTGAAGGCATC+AGG - tig0023324:1359-1378 Msa1407710:intron 40.0%
ATACCTGAAAAGTGGAGAGT+GGG - tig0023324:1569-1588 Msa1407710:intron 40.0%
ATCAGTTGCATGAGTGGAAA+AGG + tig0023324:2325-2344 None:intergenic 40.0%
CAGAATATCAGTTGCATGAG+TGG + tig0023324:2331-2350 None:intergenic 40.0%
!! TCTGGGCTAGAGTTTTCTTT+TGG + tig0023324:2415-2434 None:intergenic 40.0%
GGAAATCACTTGAGCATTTG+TGG + tig0023324:2520-2539 None:intergenic 40.0%
AGACGAACATTAATGTGGGA+AGG + tig0023324:2562-2581 None:intergenic 40.0%
AAACAGAACACGTGGCAATA+GGG + tig0023324:2615-2634 None:intergenic 40.0%
AAAGAAGCAGTGCATTAGCT+AGG - tig0023324:2859-2878 Msa1407710:intron 40.0%
GAATCACAATATCACCAAGC+TGG - tig0023324:2943-2962 Msa1407710:intron 40.0%
! GCTTGTTGGTAAAGCTTTCT+AGG + tig0023324:3027-3046 None:intergenic 40.0%
AAAAGAAGGATACCGCTTGT+TGG + tig0023324:3041-3060 None:intergenic 40.0%
! AACAAGCGGTATCCTTCTTT+TGG - tig0023324:3040-3059 Msa1407710:intron 40.0%
! ACAAGCGGTATCCTTCTTTT+GGG - tig0023324:3041-3060 Msa1407710:intron 40.0%
CTCCATCTTTAGTGAAGCTT+CGG - tig0023324:3204-3223 Msa1407710:CDS 40.0%
TCCATCTTTAGTGAAGCTTC+GGG - tig0023324:3205-3224 Msa1407710:CDS 40.0%
AACCTATGTTCTTCCTGTCA+AGG - tig0023324:3391-3410 Msa1407710:CDS 40.0%
AACCTTGACAGGAAGAACAT+AGG + tig0023324:3396-3415 None:intergenic 40.0%
AAGAGGAGTTGCGCTCATAA+AGG - tig0023324:359-378 Msa1407710:three_prime_UTR 45.0%
! AAGAAGGTGAAGTAACGGAG+AGG + tig0023324:487-506 None:intergenic 45.0%
TAGACGAATGCCATTGAAGG+AGG + tig0023324:555-574 None:intergenic 45.0%
ACGTAGACGAATGCCATTGA+AGG + tig0023324:558-577 None:intergenic 45.0%
TTCGGTCTCAGTTGTGATGA+TGG - tig0023324:619-638 Msa1407710:CDS 45.0%
!! CTCTTCGTTGATTTGTTCGG+TGG + tig0023324:684-703 None:intergenic 45.0%
CACCGAACAAATCAACGAAG+AGG - tig0023324:682-701 Msa1407710:CDS 45.0%
CGAAGAGGTTGTTGACCTTA+AGG - tig0023324:697-716 Msa1407710:CDS 45.0%
! CATTACGAGCGGATTTCTGA+AGG + tig0023324:742-761 None:intergenic 45.0%
! GGAATGAATAGGGTGCTAGT+AGG - tig0023324:982-1001 Msa1407710:intron 45.0%
! ACAACTGGCTTCTTATTGCC+TGG - tig0023324:1094-1113 Msa1407710:intron 45.0%
AAACCAAAGACTCACTAGGG+TGG - tig0023324:1164-1183 Msa1407710:intron 45.0%
AACCAAAGACTCACTAGGGT+GGG - tig0023324:1165-1184 Msa1407710:intron 45.0%
!!! CACTCTCCACTTTTCAGGTA+TGG + tig0023324:1570-1589 None:intergenic 45.0%
CATACCTGAAAAGTGGAGAG+TGG - tig0023324:1568-1587 Msa1407710:intron 45.0%
TACCTGAAAAGTGGAGAGTG+GGG - tig0023324:1570-1589 Msa1407710:intron 45.0%
TCCTCCAAGCCATCTTACAA+CGG + tig0023324:1602-1621 None:intergenic 45.0%
GAGTCTACAAGCCATCGTAT+TGG + tig0023324:1662-1681 None:intergenic 45.0%
TCAAACTTAAGACCCGGCAA+TGG + tig0023324:1713-1732 None:intergenic 45.0%
!!! TCCTCTGTTTTGGGGTTCTT+CGG + tig0023324:1906-1925 None:intergenic 45.0%
AATGTGACCATGCTCACATC+AGG - tig0023324:2060-2079 Msa1407710:intron 45.0%
AGACATTCCTGATGTGAGCA+TGG + tig0023324:2070-2089 None:intergenic 45.0%
AGTGTAGGGATACACCGAAA+CGG - tig0023324:2447-2466 Msa1407710:intron 45.0%
GTGGGGTGACTAATAACACA+GGG + tig0023324:2501-2520 None:intergenic 45.0%
TGTGGGGTGACTAATAACAC+AGG + tig0023324:2502-2521 None:intergenic 45.0%
! GGATAGATGTGTGGTGGAAT+AGG + tig0023324:2541-2560 None:intergenic 45.0%
ATGTGGGAAGGATAGATGTG+TGG + tig0023324:2550-2569 None:intergenic 45.0%
AACAGAACACGTGGCAATAG+GGG + tig0023324:2614-2633 None:intergenic 45.0%
CAAACAGAACACGTGGCAAT+AGG + tig0023324:2616-2635 None:intergenic 45.0%
CTATTGCCACGTGTTCTGTT+TGG - tig0023324:2614-2633 Msa1407710:intron 45.0%
ATCCTACCAAACAGAACACG+TGG + tig0023324:2623-2642 None:intergenic 45.0%
! TGTCAGTACTGAAGGACTGA+AGG + tig0023324:2666-2685 None:intergenic 45.0%
! CAGAAGTCTGTCAGTACTGA+AGG + tig0023324:2674-2693 None:intergenic 45.0%
CATAAAGTGGAAAAGGAGCG+CGG + tig0023324:2728-2747 None:intergenic 45.0%
TTTATGCAACACACCCGCAT+GGG - tig0023324:2742-2761 Msa1407710:intron 45.0%
AATTGAGGAGAATGGGCACT+AGG - tig0023324:2824-2843 Msa1407710:intron 45.0%
ATTGAGGAGAATGGGCACTA+GGG - tig0023324:2825-2844 Msa1407710:intron 45.0%
CTCGCTTGCTTACTGTAAAG+CGG - tig0023324:3096-3115 Msa1407710:CDS 45.0%
TCGCTTGCTTACTGTAAAGC+GGG - tig0023324:3097-3116 Msa1407710:CDS 45.0%
AGCTTCACTAAAGATGGAGG+TGG + tig0023324:3203-3222 None:intergenic 45.0%
CGAAGCTTCACTAAAGATGG+AGG + tig0023324:3206-3225 None:intergenic 45.0%
TCCCGAAGCTTCACTAAAGA+TGG + tig0023324:3209-3228 None:intergenic 45.0%
ATCTTTAGTGAAGCTTCGGG+AGG - tig0023324:3208-3227 Msa1407710:CDS 45.0%
!! TATTAAAACTAAAAATAAAT+GGG + tig0023324:2975-2994 None:intergenic 5.0%
!! ATATTAAAACTAAAAATAAA+TGG + tig0023324:2976-2995 None:intergenic 5.0%
GCTGGAATTGTGCACGTGTT+TGG + tig0023324:584-603 None:intergenic 50.0%
CATCACAACTGAGACCGAAG+CGG + tig0023324:618-637 None:intergenic 50.0%
GCATGAGCAACTCTCCCTTA+AGG + tig0023324:715-734 None:intergenic 50.0%
TTTCCGTCGCATGCGTAAGA+CGG - tig0023324:778-797 Msa1407710:intron 50.0%
ATACCGTCTTACGCATGCGA+CGG + tig0023324:784-803 None:intergenic 50.0%
! CAAGTCTCTTGCACTGATCC+AGG + tig0023324:1115-1134 None:intergenic 50.0%
ACCAAAGACTCACTAGGGTG+GGG - tig0023324:1166-1185 Msa1407710:intron 50.0%
GTATTGCGGCGCATAGCAAT+TGG - tig0023324:1502-1521 Msa1407710:intron 50.0%
! GACTCTCCCCATTTCAGGTA+TGG + tig0023324:1539-1558 None:intergenic 50.0%
TGGAGGAGAAGTCATTCTCC+TGG - tig0023324:1615-1634 Msa1407710:intron 50.0%
!!! TTTTGGGGTTCTTCGGTTCC+TGG + tig0023324:1899-1918 None:intergenic 50.0%
ACCGAAGAACCCCAAAACAG+AGG - tig0023324:1902-1921 Msa1407710:intron 50.0%
TGGGAAGGATAGATGTGTGG+TGG + tig0023324:2547-2566 None:intergenic 50.0%
ATGGGAGATGCAGGAACCAA+TGG + tig0023324:2585-2604 None:intergenic 50.0%
TGCCACGTGTTCTGTTTGGT+AGG - tig0023324:2618-2637 Msa1407710:intron 50.0%
TGCGGGTGTGTTGCATAAAG+TGG + tig0023324:2741-2760 None:intergenic 50.0%
CTTTATGCAACACACCCGCA+TGG - tig0023324:2741-2760 Msa1407710:intron 50.0%
ATGGGCACTAGGGATTCAGT+AGG - tig0023324:2835-2854 Msa1407710:intron 50.0%
AAAGCGGGAAAGAGAGATCG+AGG - tig0023324:3112-3131 Msa1407710:CDS 50.0%
! AGAGAGATCGAGGAGGGTAT+TGG - tig0023324:3122-3141 Msa1407710:CDS 50.0%
!! TCGAGGAGGGTATTGGTAAG+AGG - tig0023324:3129-3148 Msa1407710:CDS 50.0%
TTTAGTGAAGCTTCGGGAGG+AGG - tig0023324:3211-3230 Msa1407710:CDS 50.0%
AGAAGCCGCTGAAGCTGAAA+AGG - tig0023324:3244-3263 Msa1407710:CDS 50.0%
! TGCAGCCTTTTCAGCTTCAG+CGG + tig0023324:3252-3271 None:intergenic 50.0%
AGCGACGAAACACACCGCTT+CGG - tig0023324:601-620 Msa1407710:exon 55.0%
ACGCATGCGACGGAAATCAC+TGG + tig0023324:774-793 None:intergenic 55.0%
TCCCCACCCTAGTGAGTCTT+TGG + tig0023324:1170-1189 None:intergenic 55.0%
TTCGGGACTCTCCCCATTTC+AGG + tig0023324:1544-1563 None:intergenic 55.0%
!! CACCCCACTCTCCACTTTTC+AGG + tig0023324:1575-1594 None:intergenic 55.0%
CTGAAAAGTGGAGAGTGGGG+TGG - tig0023324:1573-1592 Msa1407710:intron 55.0%
AAAAGTGGAGAGTGGGGTGG+TGG - tig0023324:1576-1595 Msa1407710:intron 55.0%
GTGGCCGTTGTAAGATGGCT+TGG - tig0023324:1595-1614 Msa1407710:intron 55.0%
! GCCGTTGTAAGATGGCTTGG+AGG - tig0023324:1598-1617 Msa1407710:intron 55.0%
TGGCAATAGGGGAGGGCAAT+GGG + tig0023324:2603-2622 None:intergenic 55.0%
GAACACGTGGCAATAGGGGA+GGG + tig0023324:2610-2629 None:intergenic 55.0%
AGAACACGTGGCAATAGGGG+AGG + tig0023324:2611-2630 None:intergenic 55.0%
TAAATGGGGGTGGACCAGCT+TGG + tig0023324:2960-2979 None:intergenic 55.0%
CGGGAAAGAGAGATCGAGGA+GGG - tig0023324:3116-3135 Msa1407710:CDS 55.0%
GCTGAAAAGGCTGCATGAGC+TGG - tig0023324:3257-3276 Msa1407710:CDS 55.0%
GAAGCGGTGTGTTTCGTCGC+TGG + tig0023324:602-621 None:intergenic 60.0%
! GGGTGGTGGCCGTTGTAAGA+TGG - tig0023324:1590-1609 Msa1407710:intron 60.0%
GTGGCAATAGGGGAGGGCAA+TGG + tig0023324:2604-2623 None:intergenic 60.0%
ATGCAACACACCCGCATGGG+AGG - tig0023324:2745-2764 Msa1407710:intron 60.0%
GCGGGAAAGAGAGATCGAGG+AGG - tig0023324:3115-3134 Msa1407710:CDS 60.0%
GGGAGGGCAATGGGAGATGC+AGG + tig0023324:2594-2613 None:intergenic 65.0%
CCGTCATGAGCCTCCCATGC+GGG + tig0023324:2758-2777 None:intergenic 65.0%
CCCGCATGGGAGGCTCATGA+CGG - tig0023324:2755-2774 Msa1407710:intron 65.0%
CCCGTCATGAGCCTCCCATG+CGG + tig0023324:2759-2778 None:intergenic 65.0%
CCGCATGGGAGGCTCATGAC+GGG - tig0023324:2756-2775 Msa1407710:intron 65.0%
Chromosome Type Strat End Strand Name
tig0023324 gene 354 3534 354 ID=Msa1407710;Name=Msa1407710
tig0023324 mRNA 354 3534 354 ID=Msa1407710-mRNA-1;Parent=Msa1407710;Name=Msa1407710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=122|1|1|1|1|1|2|260|168
tig0023324 exon 354 796 354 ID=Msa1407710-mRNA-1:exon:25272;Parent=Msa1407710-mRNA-1
tig0023324 exon 3089 3534 3089 ID=Msa1407710-mRNA-1:exon:25271;Parent=Msa1407710-mRNA-1
tig0023324 five_prime_UTR 3413 3534 3413 ID=Msa1407710-mRNA-1:five_prime_utr;Parent=Msa1407710-mRNA-1
tig0023324 CDS 3089 3412 3089 ID=Msa1407710-mRNA-1:cds;Parent=Msa1407710-mRNA-1
tig0023324 CDS 614 796 614 ID=Msa1407710-mRNA-1:cds;Parent=Msa1407710-mRNA-1
tig0023324 three_prime_UTR 354 613 354 ID=Msa1407710-mRNA-1:three_prime_utr;Parent=Msa1407710-mRNA-1
Gene Sequence

>Msa1407710

ATGTTGAACCTCTCCGTTACTTCACCTTCTTCTTCTTCAAAACTTTCCTTTCTTCCAAAACCATTACAATTCAAAACCTCCTTCAATGGCATTCGTCTACGTCAACCAAACACGTGCACAATTCCAGCGACGAAACACACCGCTTCGGTCTCAGTTGTGATGATGGCAAAAAGAGAAGAGGAATTGAAGCAAATTAGAACTAAAACCACCGAACAAATCAACGAAGAGGTTGTTGACCTTAAGGGAGAGTTGCTCATGCTTCGCCTTCAGAAATCCGCTCGTAATGAGTTTAAGTCCAGTGATTTCCGTCGCATGCGTAAGACGATTGCTCGCTTGCTTACTGTAAAGCGGGAAAGAGAGATCGAGGAGGGTATTGGTAAGAGGTTGTCCAGAAAGCTTGATAAAAAATGGAAGAAAAGCATTGTTGTAAAACCACCTCCATCTTTAGTGAAGCTTCGGGAGGAGGAAGCAGCTGCAGAAGCCGCTGAAGCTGAAAAGGCTGCATGA

Protein sequence

>Msa1407710

MLNLSVTSPSSSSKLSFLPKPLQFKTSFNGIRLRQPNTCTIPATKHTASVSVVMMAKREEELKQIRTKTTEQINEEVVDLKGELLMLRLQKSARNEFKSSDFRRMRKTIARLLTVKREREIEEGIGKRLSRKLDKKWKKSIVVKPPPSLVKLREEEAAAEAAEAEKAA*