AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0274780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0274780 MtrunA17_Chr2g0286341 93.651 189 12 0 1 189 1 189 3.19e-123 345
Msa0274780 MtrunA17_Chr4g0066721 61.905 147 55 1 21 166 31 177 3.44e-60 186
Msa0274780 MtrunA17_Chr7g0268681 42.857 182 93 3 11 189 17 190 6.52e-43 142
Msa0274780 MtrunA17_Chr8g0381001 36.552 145 89 2 25 167 28 171 1.56e-24 95.1
Msa0274780 MtrunA17_Chr4g0066711 37.692 130 76 2 62 187 56 184 1.53e-22 89.7
Msa0274780 MtrunA17_Chr2g0303151 31.579 152 101 3 25 174 29 179 6.03e-16 72.4
Msa0274780 MtrunA17_Chr4g0021111 30.128 156 94 3 23 178 8 148 5.38e-14 66.6
Msa0274780 MtrunA17_Chr7g0217691 32.335 167 99 4 25 187 30 186 3.29e-13 65.1
Msa0274780 MtrunA17_Chr7g0251531 27.778 162 104 2 26 184 33 184 7.24e-12 61.2
Msa0274780 MtrunA17_Chr4g0042551 25.444 169 110 3 25 188 61 218 3.95e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0274780 AT4G15630.1 48.108 185 88 2 1 184 12 189 3.07e-51 163
Msa0274780 AT4G15620.1 46.486 185 91 4 1 184 12 189 3.12e-47 153
Msa0274780 AT4G15610.1 34.194 155 87 5 22 168 25 172 1.04e-19 82.8
Msa0274780 AT3G06390.1 34.815 135 81 2 25 156 39 169 2.17e-18 79.3
Msa0274780 AT5G44550.1 30.719 153 101 3 25 174 20 170 5.37e-14 67.8
Msa0274780 AT4G15610.2 36.170 94 57 1 78 168 23 116 8.95e-13 63.2
Msa0274780 AT4G20390.1 33.088 136 88 3 25 158 20 154 9.27e-13 64.3
Msa0274780 AT1G14160.1 29.091 165 107 3 25 187 53 209 1.25e-12 64.3
Msa0274780 AT5G15290.1 31.126 151 86 4 24 170 29 165 6.82e-12 61.6

Find 57 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTATTTCTGTTAGATTTA+AGG 0.145343 2_3:-6646364 Msa0274780:three_prime_UTR
GCATGTTTGATTTCACTTCT+TGG 0.164285 2_3:-6646683 Msa0274780:CDS
GTTGAATGAAATTTAAGATA+TGG 0.255413 2_3:+6652594 None:intergenic
GTTATTTGTTGGTTACATTT+TGG 0.274957 2_3:-6646316 Msa0274780:three_prime_UTR
TTAAGGCTTAATTACTCTTT+TGG 0.286880 2_3:-6646347 Msa0274780:three_prime_UTR
TTCAGATTCTTTACCACCTT+TGG 0.287155 2_3:-6652222 Msa0274780:CDS
GAACTTGTAGTTTGGTTCTA+AGG 0.290000 2_3:-6652325 Msa0274780:CDS
TTCATTATTGCTCTTGCAAA+TGG 0.304694 2_3:-6646887 Msa0274780:CDS
AATGGAGCTGCCTGGGCTAT+TGG 0.310330 2_3:-6646791 Msa0274780:CDS
AGAACCTAGATGCATGCTTT+TGG 0.342267 2_3:-6646605 Msa0274780:exon
CTCTGGCAATGGAGCTGCCT+GGG 0.353297 2_3:-6646798 Msa0274780:CDS
AAGTTATTAACGTTACAATT+TGG 0.356198 2_3:-6646287 Msa0274780:three_prime_UTR
GGTTCTAAGGCTTTGTGCCT+TGG 0.356571 2_3:-6652312 Msa0274780:CDS
TCTCTGGCAATGGAGCTGCC+TGG 0.366116 2_3:-6646799 Msa0274780:CDS
AAAGAATCTGAAATCTTAAC+AGG 0.366713 2_3:+6652233 None:intergenic
TGTAACCAACAAATAACTTA+AGG 0.379096 2_3:+6646322 None:intergenic
ACTAGAAGGAACTTGTAGTT+TGG 0.383357 2_3:-6652333 Msa0274780:CDS
TGCCTTGGTTCTAACACTTA+CGG 0.396121 2_3:-6652297 Msa0274780:CDS
ATGCACACGTTACATCTTGC+TGG 0.398008 2_3:-6652721 Msa0274780:five_prime_UTR
GACTCTACTTGACGCAATAA+TGG 0.402079 2_3:-6646834 Msa0274780:CDS
TATTGCCACTTAGCAGTAAC+AGG 0.403955 2_3:+6652194 None:intergenic
TGGTCCCTTAAGTTATTTGT+TGG 0.407748 2_3:-6646327 Msa0274780:three_prime_UTR
TCAAAGTAGTAAAGAGTTGA+AGG 0.416149 2_3:-6652378 Msa0274780:CDS
ATGGTAGCTTTGCTCTTCTC+TGG 0.423813 2_3:-6646815 Msa0274780:CDS
TTATTTCTTTGTAACATTTG+TGG 0.429807 2_3:-6646458 Msa0274780:three_prime_UTR
TTTCATTCAACATAAATAAG+TGG 0.447907 2_3:-6652582 Msa0274780:five_prime_UTR
GTAACCAACAAATAACTTAA+GGG 0.464278 2_3:+6646323 None:intergenic
GCTTTGCTCTTCTCTGGCAA+TGG 0.475961 2_3:-6646809 Msa0274780:CDS
TCATTATTGCTCTTGCAAAT+GGG 0.478620 2_3:-6646886 Msa0274780:CDS
CAAATGGGCATAAAAGCAAA+TGG 0.489917 2_3:-6646871 Msa0274780:CDS
AGATCTTGTCAATAATTGCT+AGG 0.499264 2_3:+6652544 None:intergenic
TGACATAATAATGTTGATGT+TGG 0.509693 2_3:-6646482 Msa0274780:three_prime_UTR
TAGAAATGTGATTAAAATGA+TGG 0.510564 2_3:+6652693 None:intergenic
ATTGGTGTCCTTGCTGAGAA+AGG 0.524437 2_3:-6646773 Msa0274780:CDS
AAGATGAACATAAGAGGCAT+TGG 0.526096 2_3:+6652668 None:intergenic
TAAAGAGTTGAAGGAAATTG+TGG 0.527493 2_3:-6652369 Msa0274780:CDS
AAGCAAATGGTTAGTGACAT+TGG 0.532245 2_3:-6646858 Msa0274780:CDS
AAGGAAACTCACATGTGCTA+TGG 0.533697 2_3:-6646754 Msa0274780:CDS
GTGGTAAAGTCTTCACTAGA+AGG 0.536766 2_3:-6652347 Msa0274780:CDS
TGATAAAAGATGAACATAAG+AGG 0.541084 2_3:+6652662 None:intergenic
CTTCGATGAAGTCTCAAAGC+AGG 0.542570 2_3:+6646629 None:intergenic
GTCTCCAAAAGCATGCATCT+AGG 0.543676 2_3:+6646601 None:intergenic
GATCTTGTCAATAATTGCTA+GGG 0.545108 2_3:+6652545 None:intergenic
AGCAAGGACACCAATAGCCC+AGG 0.569795 2_3:+6646781 None:intergenic
TCAAACATGCAGCAGCAGCT+TGG 0.577464 2_3:+6646696 None:intergenic
ATGTTCCTGTTACTGCTAAG+TGG 0.581337 2_3:-6652199 Msa0274780:CDS
GTGAGTTTCCTTTCTCAGCA+AGG 0.583749 2_3:+6646765 None:intergenic
ACTCTTCTGAATATATCAGA+TGG 0.600770 2_3:+6652436 None:intergenic
AAATGTGATTAAAATGATGG+AGG 0.610594 2_3:+6652696 None:intergenic
CAGGAAGCATCACAAGAGAG+AGG 0.623721 2_3:+6646648 None:intergenic
GCAGTAACAGGAACATCCAA+AGG 0.629483 2_3:+6652206 None:intergenic
AGAGTTGAAGGAAATTGTGG+TGG 0.665080 2_3:-6652366 Msa0274780:CDS
AGCCGTAAGTGTTAGAACCA+AGG 0.675160 2_3:+6652295 None:intergenic
CATAAATAAGTGGTTCATCG+CGG 0.676765 2_3:-6652572 Msa0274780:five_prime_UTR
AATCTTAACAGGAACAACTG+TGG 0.694283 2_3:+6652244 None:intergenic
GTAACAGGAACATCCAAAGG+TGG 0.698112 2_3:+6652209 None:intergenic
AAGAGCAATAATGAAAGACA+AGG 0.698566 2_3:+6646895 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAAATTTTAATAAT+TGG - chr2_3:6648356-6648375 Msa0274780:intron 0.0%
!!! AAAAAAGTCTTATATAATTA+AGG + chr2_3:6647102-6647121 None:intergenic 10.0%
!! AAATGATGTAAAATAAATAA+GGG + chr2_3:6647206-6647225 None:intergenic 10.0%
!! AAAATGATGTAAAATAAATA+AGG + chr2_3:6647207-6647226 None:intergenic 10.0%
!! AACTATATACAAAAAAAAAT+TGG - chr2_3:6647312-6647331 Msa0274780:intron 10.0%
!!! TATTAAAATTTTTAAAAACC+GGG + chr2_3:6648354-6648373 None:intergenic 10.0%
!! AAATAAGAATAAGAAATAAA+AGG - chr2_3:6648728-6648747 Msa0274780:intron 10.0%
!! TAATAAAAATGAAAAAAATC+TGG - chr2_3:6649378-6649397 Msa0274780:intron 10.0%
!! TAAAAAAGATTAAAAAATTC+TGG - chr2_3:6649464-6649483 Msa0274780:intron 10.0%
!!! TTCTAAAAAAATTAAAATTC+TGG - chr2_3:6649508-6649527 Msa0274780:intron 10.0%
!!! TTTAAATTTTAATGAAATTC+TGG - chr2_3:6649551-6649570 Msa0274780:intron 10.0%
!! ATATATACTAATCAAAATTT+CGG - chr2_3:6649932-6649951 Msa0274780:intron 10.0%
!! TGAAAAAAATTAAAAAAATC+TGG + chr2_3:6650147-6650166 None:intergenic 10.0%
!! AAAAAAAGATTAAAAAATTC+TGG + chr2_3:6650175-6650194 None:intergenic 10.0%
!! AAAAAAAATTGAAAAAATTC+TGG + chr2_3:6650258-6650277 None:intergenic 10.0%
!! TTTAAAAACACATAAATTAA+AGG - chr2_3:6650912-6650931 Msa0274780:intron 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG - chr2_3:6651304-6651323 Msa0274780:intron 10.0%
!!! TAAGTAATTTTTTTTTTTGT+AGG - chr2_3:6651365-6651384 Msa0274780:intron 10.0%
!!! AAGTAATTTTTTTTTTTGTA+GGG - chr2_3:6651366-6651385 Msa0274780:intron 10.0%
!!! TTCTAGTTTAATTTAATTTA+GGG + chr2_3:6651469-6651488 None:intergenic 10.0%
!!! ATTCTAGTTTAATTTAATTT+AGG + chr2_3:6651470-6651489 None:intergenic 10.0%
!!! TACTTTTGTTTACTATTTTT+GGG - chr2_3:6646621-6646640 Msa0274780:CDS 15.0%
!! TAAGAAAATTGAGAAAATAA+AGG + chr2_3:6647062-6647081 None:intergenic 15.0%
!! AAAGAAATACTTAATGTAAT+TGG + chr2_3:6647174-6647193 None:intergenic 15.0%
!! TATATACAAAAAAAAATTGG+TGG - chr2_3:6647315-6647334 Msa0274780:intron 15.0%
!!! AAAATTTTACAAAGAAAATG+GGG + chr2_3:6647566-6647585 None:intergenic 15.0%
!!! CAAAATTTTACAAAGAAAAT+GGG + chr2_3:6647567-6647586 None:intergenic 15.0%
!! AAATAGCATAATAAAATGAA+TGG + chr2_3:6647923-6647942 None:intergenic 15.0%
!!! TGTATTTAAAATTTATGCTA+TGG + chr2_3:6647968-6647987 None:intergenic 15.0%
!! TAATAAATAATTGATGTGAT+TGG + chr2_3:6648060-6648079 None:intergenic 15.0%
!!! GAAAAAAAAATCATGAATTT+TGG + chr2_3:6648431-6648450 None:intergenic 15.0%
!! GAAAAAAATAATGAGTAAAT+AGG - chr2_3:6649065-6649084 Msa0274780:intron 15.0%
!!! TTTTTAATTTTTCAAGTACA+GGG + chr2_3:6649277-6649296 None:intergenic 15.0%
!!! TTTTTTAATTTTTCAAGTAC+AGG + chr2_3:6649278-6649297 None:intergenic 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG - chr2_3:6649818-6649837 Msa0274780:intron 15.0%
!! GAAAAATAATGAAAAAATTC+TGG + chr2_3:6649435-6649454 None:intergenic 15.0%
!!! ACATTATTTTTTGAGTAAAT+AGG + chr2_3:6650480-6650499 None:intergenic 15.0%
!!! TATTAAAGAAAATTTTGTAG+CGG + chr2_3:6650867-6650886 None:intergenic 15.0%
!!! ATTTTGTGTTTAAAAATAAG+AGG + chr2_3:6650939-6650958 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr2_3:6650982-6651001 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG + chr2_3:6651054-6651073 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG + chr2_3:6651173-6651192 None:intergenic 15.0%
!!! TTAAACAAAATTATTTTAGC+AGG - chr2_3:6651331-6651350 Msa0274780:intron 15.0%
!!! TAAACAAAATTATTTTAGCA+GGG - chr2_3:6651332-6651351 Msa0274780:intron 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG - chr2_3:6651395-6651414 Msa0274780:intron 15.0%
!! ATATACAACGAAATAAAAAT+CGG - chr2_3:6651511-6651530 Msa0274780:intron 15.0%
!!! TAATTTTTCTTTCGTTTATT+AGG - chr2_3:6652077-6652096 Msa0274780:intron 15.0%
!!! AATTTTTTTTGGATTAAACA+AGG + chr2_3:6652459-6652478 None:intergenic 15.0%
!!! ATCAATCACATAATTTTTTT+TGG + chr2_3:6652470-6652489 None:intergenic 15.0%
!! TAGAAATGTGATTAAAATGA+TGG + chr2_3:6646345-6646364 None:intergenic 20.0%
!!! GTTGAATGAAATTTAAGATA+TGG + chr2_3:6646444-6646463 None:intergenic 20.0%
!! TTTCATTCAACATAAATAAG+TGG - chr2_3:6646453-6646472 Msa0274780:three_prime_UTR 20.0%
!!! GTACTTTTGTTTACTATTTT+TGG - chr2_3:6646620-6646639 Msa0274780:CDS 20.0%
!! TCTCAATGCATATAATTAAT+GGG + chr2_3:6647009-6647028 None:intergenic 20.0%
!! TTCTCAATGCATATAATTAA+TGG + chr2_3:6647010-6647029 None:intergenic 20.0%
!!! ATGTTCAAATTACTTTTGTT+TGG - chr2_3:6647032-6647051 Msa0274780:intron 20.0%
!!! CCAAAAAAGTCTTATAAAAA+GGG + chr2_3:6647146-6647165 None:intergenic 20.0%
!!! ACCAAAAAAGTCTTATAAAA+AGG + chr2_3:6647147-6647166 None:intergenic 20.0%
!! CAATGCATATAATATATGTA+GGG + chr2_3:6647363-6647382 None:intergenic 20.0%
!! ACAATGCATATAATATATGT+AGG + chr2_3:6647364-6647383 None:intergenic 20.0%
!! TCACAAAAGTTGTTAAAAAA+TGG + chr2_3:6647472-6647491 None:intergenic 20.0%
!!! GCAAAATTTTACAAAGAAAA+TGG + chr2_3:6647568-6647587 None:intergenic 20.0%
!!! AAAATGGTTCTATATTAACA+AGG - chr2_3:6647641-6647660 Msa0274780:intron 20.0%
!!! AACTAGCTTTAAATCTTATA+TGG - chr2_3:6647841-6647860 Msa0274780:intron 20.0%
!! TAAGAATAAGAAATAAAAGG+TGG - chr2_3:6648731-6648750 Msa0274780:intron 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG - chr2_3:6649203-6649222 Msa0274780:intron 20.0%
!!! ATTCTGGAAAATAAAAATTC+TGG - chr2_3:6649567-6649586 Msa0274780:intron 20.0%
!! ATTCTCGAAAATAAAAATTC+TGG - chr2_3:6649592-6649611 Msa0274780:intron 20.0%
!! CGAAAATAAAAATGAAATTC+TGG - chr2_3:6649645-6649664 Msa0274780:intron 20.0%
!! TATTTATAAACCGAGAATAA+GGG - chr2_3:6649742-6649761 Msa0274780:intron 20.0%
!!! TTTTCATTAGTATTTTTTCC+GGG - chr2_3:6649819-6649838 Msa0274780:intron 20.0%
!! TATAAATACACAAAAATTCC+CGG + chr2_3:6649840-6649859 None:intergenic 20.0%
!! ATAAATACACAAAAAGTTCT+CGG + chr2_3:6649865-6649884 None:intergenic 20.0%
!! TATTTATAAACCGAGAATAA+GGG - chr2_3:6649742-6649761 Msa0274780:intron 20.0%
!! TTAGTATATATATCGAACTT+AGG + chr2_3:6649923-6649942 None:intergenic 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG + chr2_3:6649203-6649222 None:intergenic 20.0%
!! AATATAAATGCGTTGAAAAT+GGG + chr2_3:6650585-6650604 None:intergenic 20.0%
!! AAATATAAATGCGTTGAAAA+TGG + chr2_3:6650586-6650605 None:intergenic 20.0%
!! TTTCAACGCATTTATATTTA+CGG - chr2_3:6650587-6650606 Msa0274780:intron 20.0%
!! ATGTTGTTATACAACTTTAA+AGG - chr2_3:6650734-6650753 Msa0274780:intron 20.0%
!!! TGATAATTAGTTTACAAAAG+AGG + chr2_3:6650779-6650798 None:intergenic 20.0%
!! AAACAAATTTGGATTGAATA+AGG + chr2_3:6651043-6651062 None:intergenic 20.0%
!!! TTTAGGGTTAAATATGTTTT+TGG + chr2_3:6651453-6651472 None:intergenic 20.0%
!!! TTATTTCTTTGTAACATTTG+TGG - chr2_3:6652577-6652596 Msa0274780:five_prime_UTR 20.0%
!!! TTGTATTTCTGTTAGATTTA+AGG - chr2_3:6652671-6652690 Msa0274780:five_prime_UTR 20.0%
! AAATGTGATTAAAATGATGG+AGG + chr2_3:6646342-6646361 None:intergenic 25.0%
! TGATAAAAGATGAACATAAG+AGG + chr2_3:6646376-6646395 None:intergenic 25.0%
! TGGAACAACATATCTAAAAA+CGG + chr2_3:6646424-6646443 None:intergenic 25.0%
!!! AATAGTGTTGATACCAAAAA+TGG + chr2_3:6646534-6646553 None:intergenic 25.0%
!!! AATGAAGATTGTTTTGCAAA+AGG + chr2_3:6646573-6646592 None:intergenic 25.0%
!!! TTACTATTTTTGGGAAGTAA+TGG - chr2_3:6646630-6646649 Msa0274780:CDS 25.0%
!! AAAGAATCTGAAATCTTAAC+AGG + chr2_3:6646805-6646824 None:intergenic 25.0%
! TTAAGAACATGATAGAAAGA+GGG + chr2_3:6646912-6646931 None:intergenic 25.0%
! ATTAAGAACATGATAGAAAG+AGG + chr2_3:6646913-6646932 None:intergenic 25.0%
!! CCCTTTTTATAAGACTTTTT+TGG - chr2_3:6647143-6647162 Msa0274780:intron 25.0%
! ATACAAAAAAAAATTGGTGG+TGG - chr2_3:6647318-6647337 Msa0274780:intron 25.0%
! AAATATCATTTCACAGTTGT+TGG + chr2_3:6647443-6647462 None:intergenic 25.0%
! AGTTAAAACATAATGTGAGT+AGG + chr2_3:6647508-6647527 None:intergenic 25.0%
!!! ACTTTTTCTCTCTATTGATT+TGG - chr2_3:6647525-6647544 Msa0274780:intron 25.0%
!!! CTTTTTCTCTCTATTGATTT+GGG - chr2_3:6647526-6647545 Msa0274780:intron 25.0%
!! TAAAATTTTGCTTGTCACAA+AGG - chr2_3:6647577-6647596 Msa0274780:intron 25.0%
!!! AAGGAAAATTCTGAAATGAT+GGG - chr2_3:6648302-6648321 Msa0274780:intron 25.0%
! TTTCTCTATAAATAGAGACT+TGG - chr2_3:6648447-6648466 Msa0274780:intron 25.0%
! ATGAAGATAGTGAAAAAACT+TGG + chr2_3:6648501-6648520 None:intergenic 25.0%
! AATAAGAAATAAAAGGTGGT+GGG - chr2_3:6648735-6648754 Msa0274780:intron 25.0%
! TGTTGAATGAAAAAAACCAT+TGG - chr2_3:6648764-6648783 Msa0274780:intron 25.0%
! TCGTGATGTTAATTACTTAA+TGG - chr2_3:6648925-6648944 Msa0274780:intron 25.0%
! AATGAAATGTTATAGAAGCA+TGG - chr2_3:6649007-6649026 Msa0274780:intron 25.0%
! ACAGTTAACAGAAAAATTGA+CGG + chr2_3:6650350-6650369 None:intergenic 25.0%
!! ATAAGTGTAAAATTTCAGGT+GGG + chr2_3:6649242-6649261 None:intergenic 25.0%
! TATAAGTGTAAAATTTCAGG+TGG + chr2_3:6649243-6649262 None:intergenic 25.0%
! GCATATAAGTGTAAAATTTC+AGG + chr2_3:6649246-6649265 None:intergenic 25.0%
! GTATTTATAAACCGAGAATA+AGG - chr2_3:6649741-6649760 Msa0274780:intron 25.0%
!!! CATATTTTTTCCCTTATTCT+CGG + chr2_3:6649755-6649774 None:intergenic 25.0%
! ATACATAAAAAACCTAAGCT+CGG + chr2_3:6649790-6649809 None:intergenic 25.0%
! GTATTTATAAACCGAGAATA+AGG - chr2_3:6649741-6649760 Msa0274780:intron 25.0%
!!! TGTATTTTTTCCCTTATTCT+CGG + chr2_3:6649891-6649910 None:intergenic 25.0%
! CACATAAGTGTAAAATTTCA+GGG - chr2_3:6650305-6650324 Msa0274780:intron 25.0%
! ACATAAGTGTAAAATTTCAG+GGG - chr2_3:6650306-6650325 Msa0274780:intron 25.0%
! ACAGTTAACAGAAAAATTGA+CGG - chr2_3:6650350-6650369 Msa0274780:intron 25.0%
! ATTAACGTTATGCAATTTCA+GGG - chr2_3:6650386-6650405 Msa0274780:intron 25.0%
! AACAAAATACTGTGTATCTA+TGG + chr2_3:6650553-6650572 None:intergenic 25.0%
! ATATAAATGCGTTGAAAATG+GGG + chr2_3:6650584-6650603 None:intergenic 25.0%
!!! TAAAGGTAACTACTTTTTGA+TGG - chr2_3:6650751-6650770 Msa0274780:intron 25.0%
!!! AAAGGTAACTACTTTTTGAT+GGG - chr2_3:6650752-6650771 Msa0274780:intron 25.0%
!!! GAGTGCAAAATTTTTTTGTA+GGG + chr2_3:6651011-6651030 None:intergenic 25.0%
!!! TGAGTGCAAAATTTTTTTGT+AGG + chr2_3:6651012-6651031 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG - chr2_3:6651108-6651127 Msa0274780:intron 25.0%
!!! TTTTGCGATATTTTTTTCAG+AGG + chr2_3:6651135-6651154 None:intergenic 25.0%
! AAGTAAGGACTAAAATTAGA+AGG - chr2_3:6651410-6651429 Msa0274780:intron 25.0%
! AAATTTGATTGTGCATACAT+AGG - chr2_3:6651768-6651787 Msa0274780:intron 25.0%
!! CTCGTTTAATCAACTATTTT+AGG + chr2_3:6651909-6651928 None:intergenic 25.0%
!! TTCGTTTATTAGGTATTTTG+TGG - chr2_3:6652087-6652106 Msa0274780:intron 25.0%
! TGACATAATAATGTTGATGT+TGG - chr2_3:6652553-6652572 Msa0274780:five_prime_UTR 25.0%
!! TTAAGGCTTAATTACTCTTT+TGG - chr2_3:6652688-6652707 Msa0274780:five_prime_UTR 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr2_3:6652715-6652734 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr2_3:6652716-6652735 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr2_3:6652719-6652738 Msa0274780:five_prime_UTR 25.0%
!!! AGTAGTTGGAAGTTTTTTGT+TGG + chr2_3:6646399-6646418 None:intergenic 30.0%
ATCTAAAAACGGTTAGTAGT+TGG + chr2_3:6646413-6646432 None:intergenic 30.0%
GATCTTGTCAATAATTGCTA+GGG + chr2_3:6646493-6646512 None:intergenic 30.0%
AGATCTTGTCAATAATTGCT+AGG + chr2_3:6646494-6646513 None:intergenic 30.0%
!! ATTTGTTACCCAACCATTTT+TGG - chr2_3:6646518-6646537 Msa0274780:three_prime_UTR 30.0%
TGTTGATACCAAAAATGGTT+GGG + chr2_3:6646529-6646548 None:intergenic 30.0%
ACTCTTCTGAATATATCAGA+TGG + chr2_3:6646602-6646621 None:intergenic 30.0%
TCAAAGTAGTAAAGAGTTGA+AGG - chr2_3:6646657-6646676 Msa0274780:CDS 30.0%
TAAAGAGTTGAAGGAAATTG+TGG - chr2_3:6646666-6646685 Msa0274780:CDS 30.0%
GGGAAATATAACTTACACAT+AGG + chr2_3:6646875-6646894 None:intergenic 30.0%
AGAGGGAACAATCTATTTAA+GGG + chr2_3:6646895-6646914 None:intergenic 30.0%
AAGAGGGAACAATCTATTTA+AGG + chr2_3:6646896-6646915 None:intergenic 30.0%
TAAACTAACTCTTGCTCTTA+AGG - chr2_3:6647267-6647286 Msa0274780:intron 30.0%
AACACAACTCTTTAGCAAAA+TGG - chr2_3:6647625-6647644 Msa0274780:intron 30.0%
GGTTCTATATTAACAAGGTT+CGG - chr2_3:6647646-6647665 Msa0274780:intron 30.0%
! GGACAATTTTGTTGCATTTT+TGG + chr2_3:6647902-6647921 None:intergenic 30.0%
!! GAAGGAAAATTCTGAAATGA+TGG - chr2_3:6648301-6648320 Msa0274780:intron 30.0%
!! AGGAAAATTCTGAAATGATG+GGG - chr2_3:6648303-6648322 Msa0274780:intron 30.0%
GAATAAGAAATAAAAGGTGG+TGG - chr2_3:6648734-6648753 Msa0274780:intron 30.0%
ATAAGAAATAAAAGGTGGTG+GGG - chr2_3:6648736-6648755 Msa0274780:intron 30.0%
AATGAAAAAAACCATTGGAG+AGG - chr2_3:6648769-6648788 Msa0274780:intron 30.0%
TTAAGAGAGAGAAAATGATG+TGG - chr2_3:6648814-6648833 Msa0274780:intron 30.0%
TTTGACAAACCTTGCAATTT+CGG + chr2_3:6650443-6650462 None:intergenic 30.0%
TTGATGTTTCGTTAACTACA+GGG + chr2_3:6650415-6650434 None:intergenic 30.0%
ATTGATGTTTCGTTAACTAC+AGG + chr2_3:6650414-6650433 None:intergenic 30.0%
GATTAACGTTATGCAATTTC+AGG + chr2_3:6650385-6650404 None:intergenic 30.0%
TTAACAGAAAAATTGACGGA+GGG + chr2_3:6650354-6650373 None:intergenic 30.0%
TGTATTTATAAACCGAGCTT+AGG - chr2_3:6649775-6649794 Msa0274780:intron 30.0%
ATGTCGAAATTTCGAAATTC+TGG + chr2_3:6649980-6649999 None:intergenic 30.0%
GCACATAAGTGTAAAATTTC+AGG - chr2_3:6650304-6650323 Msa0274780:intron 30.0%
CATAAGTGTAAAATTTCAGG+GGG - chr2_3:6650307-6650326 Msa0274780:intron 30.0%
ATAAGTGTAAAATTTCAGGG+GGG - chr2_3:6650308-6650327 Msa0274780:intron 30.0%
TTAACAGAAAAATTGACGGA+GGG - chr2_3:6650354-6650373 Msa0274780:intron 30.0%
GATTAACGTTATGCAATTTC+AGG - chr2_3:6650385-6650404 Msa0274780:intron 30.0%
TTAACGTTATGCAATTTCAG+GGG - chr2_3:6650387-6650406 Msa0274780:intron 30.0%
ATTGATGTTTCGTTAACTAC+AGG - chr2_3:6650414-6650433 Msa0274780:intron 30.0%
TTGATGTTTCGTTAACTACA+GGG - chr2_3:6650415-6650434 Msa0274780:intron 30.0%
GCATTTATATTTACGGTTAC+CGG - chr2_3:6650594-6650613 Msa0274780:intron 30.0%
!! AAGTATGGTTGAGTTTTATG+GGG + chr2_3:6650672-6650691 None:intergenic 30.0%
!! CAAGTATGGTTGAGTTTTAT+GGG + chr2_3:6650673-6650692 None:intergenic 30.0%
! ACAAGTATGGTTGAGTTTTA+TGG + chr2_3:6650674-6650693 None:intergenic 30.0%
CTTATTAATGGCAACAAGTA+TGG + chr2_3:6650687-6650706 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr2_3:6650967-6650986 None:intergenic 30.0%
! TAGAAGGTCGCAATTTTATA+TGG - chr2_3:6651426-6651445 Msa0274780:intron 30.0%
CATTTAACCCACTAAAAAGA+GGG + chr2_3:6651838-6651857 None:intergenic 30.0%
TCATTTAACCCACTAAAAAG+AGG + chr2_3:6651839-6651858 None:intergenic 30.0%
!!! TCTTTTTAGTGGGTTAAATG+AGG - chr2_3:6651838-6651857 Msa0274780:intron 30.0%
! TTTTAGGCTGATTGAATTTG+AGG + chr2_3:6651893-6651912 None:intergenic 30.0%
AATAGTTGATTAAACGAGCT+AGG - chr2_3:6651911-6651930 Msa0274780:intron 30.0%
ATAGTTGATTAAACGAGCTA+GGG - chr2_3:6651912-6651931 Msa0274780:intron 30.0%
TTGGCTAAAGTAGTCATATT+TGG - chr2_3:6651959-6651978 Msa0274780:intron 30.0%
TGGCTAAAGTAGTCATATTT+GGG - chr2_3:6651960-6651979 Msa0274780:intron 30.0%
GTAGTAAGATGTCAAAAACA+TGG + chr2_3:6651994-6652013 None:intergenic 30.0%
! GTTTATTAGGTATTTTGTGG+TGG - chr2_3:6652090-6652109 Msa0274780:intron 30.0%
AAGAGCAATAATGAAAGACA+AGG + chr2_3:6652143-6652162 None:intergenic 30.0%
TTCATTATTGCTCTTGCAAA+TGG - chr2_3:6652148-6652167 Msa0274780:intron 30.0%
TCATTATTGCTCTTGCAAAT+GGG - chr2_3:6652149-6652168 Msa0274780:intron 30.0%
! AAGATGAACATAAGAGGCAT+TGG + chr2_3:6646370-6646389 None:intergenic 35.0%
CATAAATAAGTGGTTCATCG+CGG - chr2_3:6646463-6646482 Msa0274780:three_prime_UTR 35.0%
! GTGTTGATACCAAAAATGGT+TGG + chr2_3:6646530-6646549 None:intergenic 35.0%
!!! CTATTTTTGGGAAGTAATGG+AGG - chr2_3:6646633-6646652 Msa0274780:CDS 35.0%
ACTAGAAGGAACTTGTAGTT+TGG - chr2_3:6646702-6646721 Msa0274780:CDS 35.0%
!! GAACTTGTAGTTTGGTTCTA+AGG - chr2_3:6646710-6646729 Msa0274780:CDS 35.0%
AATCTTAACAGGAACAACTG+TGG + chr2_3:6646794-6646813 None:intergenic 35.0%
TTCAGATTCTTTACCACCTT+TGG - chr2_3:6646813-6646832 Msa0274780:CDS 35.0%
!! AAAAAAAAATTGGTGGTGGC+CGG - chr2_3:6647322-6647341 Msa0274780:intron 35.0%
! CGAACTTAACTTAGTTGGTA+GGG + chr2_3:6647387-6647406 None:intergenic 35.0%
TATCGCGAACTTAACTTAGT+TGG + chr2_3:6647392-6647411 None:intergenic 35.0%
TATATTTAGACCAGCTGCAA+TGG - chr2_3:6648078-6648097 Msa0274780:intron 35.0%
GCGGTTAAACAATGTTGAAT+GGG + chr2_3:6648194-6648213 None:intergenic 35.0%
AGCGGTTAAACAATGTTGAA+TGG + chr2_3:6648195-6648214 None:intergenic 35.0%
!! TTGCGATTATATTGGTTTCC+CGG - chr2_3:6648333-6648352 Msa0274780:intron 35.0%
! GAGACTTGGTTCATTTGATT+TGG - chr2_3:6648461-6648480 Msa0274780:intron 35.0%
! TTCAACTTTTACCTCTCCAA+TGG + chr2_3:6648783-6648802 None:intergenic 35.0%
! AGAAAATGATGTGGAGTGTT+GGG - chr2_3:6648823-6648842 Msa0274780:intron 35.0%
! AGTGTTGGGAATTGAAAAAG+TGG - chr2_3:6648837-6648856 Msa0274780:intron 35.0%
GTGTTGGGAATTGAAAAAGT+GGG - chr2_3:6648838-6648857 Msa0274780:intron 35.0%
!! ATTGAAAAAGTGGGTGTTGA+AGG - chr2_3:6648847-6648866 Msa0274780:intron 35.0%
!! TTGAAAAAGTGGGTGTTGAA+GGG - chr2_3:6648848-6648867 Msa0274780:intron 35.0%
! AAGAGTATAACCATTGTGCA+TGG - chr2_3:6648877-6648896 Msa0274780:intron 35.0%
TGATATAAGACCATGCACAA+TGG + chr2_3:6648890-6648909 None:intergenic 35.0%
TTGACAAACCTTGCAATTTC+GGG + chr2_3:6650444-6650463 None:intergenic 35.0%
TGATGTTTCGTTAACTACAG+GGG + chr2_3:6650416-6650435 None:intergenic 35.0%
AACGTTATGCAATTTCAGGA+GGG + chr2_3:6649161-6649180 None:intergenic 35.0%
TAACGTTATGCAATTTCAGG+AGG + chr2_3:6650388-6650407 None:intergenic 35.0%
TAACAGAAAAATTGACGGAG+GGG + chr2_3:6650355-6650374 None:intergenic 35.0%
GTTAACAGAAAAATTGACGG+AGG + chr2_3:6650353-6650372 None:intergenic 35.0%
GTTAACAGAAAAATTGACGG+AGG - chr2_3:6650353-6650372 Msa0274780:intron 35.0%
TAACAGAAAAATTGACGGAG+GGG - chr2_3:6650355-6650374 Msa0274780:intron 35.0%
TAACGTTATGCAATTTCAGG+GGG - chr2_3:6650388-6650407 Msa0274780:intron 35.0%
TGATGTTTCGTTAACTACAG+GGG - chr2_3:6650416-6650435 Msa0274780:intron 35.0%
ATACTGTGTATCTATGGAGA+AGG + chr2_3:6650547-6650566 None:intergenic 35.0%
ACCAAATAGAAATGCATGGT+TGG + chr2_3:6650630-6650649 None:intergenic 35.0%
ACCATGCATTTCTATTTGGT+TGG - chr2_3:6650630-6650649 Msa0274780:intron 35.0%
! ATTTCTATTTGGTTGGCTGA+TGG - chr2_3:6650637-6650656 Msa0274780:intron 35.0%
! CAAGTTTAGAACACTATGAC+AGG + chr2_3:6651270-6651289 None:intergenic 35.0%
CGAAATAAAAATCGGATCGA+CGG - chr2_3:6651519-6651538 Msa0274780:intron 35.0%
GTATGCACAATCAAATTTGC+TGG + chr2_3:6651766-6651785 None:intergenic 35.0%
!!! TTTTAGTGGGTTAAATGAGG+CGG - chr2_3:6651841-6651860 Msa0274780:intron 35.0%
!!! TGAATTTGAGGTTTTGAACC+TGG + chr2_3:6651881-6651900 None:intergenic 35.0%
AAAGTTAGAGGTGGAAAAAC+GGG + chr2_3:6651941-6651960 None:intergenic 35.0%
CAAAGTTAGAGGTGGAAAAA+CGG + chr2_3:6651942-6651961 None:intergenic 35.0%
ACTACTTTAGCCAAAGTTAG+AGG + chr2_3:6651953-6651972 None:intergenic 35.0%
CAAATGGGCATAAAAGCAAA+TGG - chr2_3:6652164-6652183 Msa0274780:intron 35.0%
AAGCAAATGGTTAGTGACAT+TGG - chr2_3:6652177-6652196 Msa0274780:intron 35.0%
! GCATGTTTGATTTCACTTCT+TGG - chr2_3:6652352-6652371 Msa0274780:CDS 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr2_3:6652708-6652727 Msa0274780:five_prime_UTR 35.0%
AGAGTTGAAGGAAATTGTGG+TGG - chr2_3:6646669-6646688 Msa0274780:CDS 40.0%
GTGGTAAAGTCTTCACTAGA+AGG - chr2_3:6646688-6646707 Msa0274780:CDS 40.0%
!! TGCCTTGGTTCTAACACTTA+CGG - chr2_3:6646738-6646757 Msa0274780:CDS 40.0%
ATGTTCCTGTTACTGCTAAG+TGG - chr2_3:6646836-6646855 Msa0274780:CDS 40.0%
! TATTGCCACTTAGCAGTAAC+AGG + chr2_3:6646844-6646863 None:intergenic 40.0%
!! AAAAAAAATTGGTGGTGGCC+GGG - chr2_3:6647323-6647342 Msa0274780:intron 40.0%
GCGAACTTAACTTAGTTGGT+AGG + chr2_3:6647388-6647407 None:intergenic 40.0%
! GGTTCGGCTCTAGTATTTAT+AGG - chr2_3:6647662-6647681 Msa0274780:intron 40.0%
AATCGATCATATATGCCCCA+CGG - chr2_3:6647694-6647713 Msa0274780:intron 40.0%
AACAAGTGATGAAGCTGCAA+TGG - chr2_3:6648121-6648140 Msa0274780:intron 40.0%
ATTGTTTAACCGCTGACACA+GGG - chr2_3:6648201-6648220 Msa0274780:intron 40.0%
GACACGTGTTGCGATTATAT+TGG - chr2_3:6648325-6648344 Msa0274780:intron 40.0%
GAGAAAATGATGTGGAGTGT+TGG - chr2_3:6648822-6648841 Msa0274780:intron 40.0%
TGACAAACCTTGCAATTTCG+GGG + chr2_3:6650445-6650464 None:intergenic 40.0%
GATGTTTCGTTAACTACAGG+GGG + chr2_3:6650417-6650436 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG + chr2_3:6650356-6650375 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG - chr2_3:6650356-6650375 Msa0274780:intron 40.0%
AACGTTATGCAATTTCAGGG+GGG - chr2_3:6650389-6650408 Msa0274780:intron 40.0%
GATGTTTCGTTAACTACAGG+GGG - chr2_3:6650417-6650436 Msa0274780:intron 40.0%
TGACAAACCTTGCAATTTCG+AGG - chr2_3:6650445-6650464 Msa0274780:intron 40.0%
GACAAACCTTGCAATTTCGA+GGG - chr2_3:6650446-6650465 Msa0274780:intron 40.0%
ACAAACCTTGCAATTTCGAG+GGG - chr2_3:6650447-6650466 Msa0274780:intron 40.0%
GTGTATCTATGGAGAAGGAA+TGG + chr2_3:6650542-6650561 None:intergenic 40.0%
GCCAACCATGCATTTCTATT+TGG - chr2_3:6650626-6650645 Msa0274780:intron 40.0%
GCCAACCAAATAGAAATGCA+TGG + chr2_3:6650634-6650653 None:intergenic 40.0%
GTGAGTCGCGATCTTATTAA+TGG + chr2_3:6650699-6650718 None:intergenic 40.0%
!! TGTGGCGGTTATTTCTAAAG+TGG - chr2_3:6651547-6651566 Msa0274780:intron 40.0%
!! GTGGCGGTTATTTCTAAAGT+GGG - chr2_3:6651548-6651567 Msa0274780:intron 40.0%
GCATACATAGGCTTGACAAA+TGG - chr2_3:6651780-6651799 Msa0274780:intron 40.0%
TAACCCACTAAAAAGAGGGA+CGG + chr2_3:6651834-6651853 None:intergenic 40.0%
! CGTTTTTCCACCTCTAACTT+TGG - chr2_3:6651940-6651959 Msa0274780:intron 40.0%
ACTTTAGCCAAAGTTAGAGG+TGG + chr2_3:6651950-6651969 None:intergenic 40.0%
GACTCTACTTGACGCAATAA+TGG - chr2_3:6652201-6652220 Msa0274780:CDS 40.0%
AAGGAAACTCACATGTGCTA+TGG - chr2_3:6652281-6652300 Msa0274780:CDS 40.0%
! AGAACCTAGATGCATGCTTT+TGG - chr2_3:6652430-6652449 Msa0274780:five_prime_UTR 40.0%
ATGCACACGTTACATCTTGC+TGG - chr2_3:6646314-6646333 Msa0274780:three_prime_UTR 45.0%
AGCCGTAAGTGTTAGAACCA+AGG + chr2_3:6646743-6646762 None:intergenic 45.0%
GTAACAGGAACATCCAAAGG+TGG + chr2_3:6646829-6646848 None:intergenic 45.0%
GCAGTAACAGGAACATCCAA+AGG + chr2_3:6646832-6646851 None:intergenic 45.0%
ATCGATCATATATGCCCCAC+GGG - chr2_3:6647695-6647714 Msa0274780:intron 45.0%
TTCAACACAACCATTGCAGC+TGG + chr2_3:6648091-6648110 None:intergenic 45.0%
AGCTGCAATGGCATGTTGAA+TGG - chr2_3:6648133-6648152 Msa0274780:intron 45.0%
GCTGCAATGGCATGTTGAAT+GGG - chr2_3:6648134-6648153 Msa0274780:intron 45.0%
CTGCAATGGCATGTTGAATG+GGG - chr2_3:6648135-6648154 Msa0274780:intron 45.0%
AATGGGGTTGAGAGATGACA+TGG - chr2_3:6648151-6648170 Msa0274780:intron 45.0%
ATGGGGTTGAGAGATGACAT+GGG - chr2_3:6648152-6648171 Msa0274780:intron 45.0%
CATTGTTTAACCGCTGACAC+AGG - chr2_3:6648200-6648219 Msa0274780:intron 45.0%
ACAAACCTTGCAATTTCGGG+GGG + chr2_3:6649104-6649123 None:intergenic 45.0%
GACAAACCTTGCAATTTCGG+GGG + chr2_3:6649105-6649124 None:intergenic 45.0%
CAAACCTTGCAATTTCGAGG+GGG - chr2_3:6650448-6650467 Msa0274780:intron 45.0%
ATTTCCCCCTCGAAATTGCA+AGG + chr2_3:6650455-6650474 None:intergenic 45.0%
!! GCGGTTATTTCTAAAGTGGG+TGG - chr2_3:6651551-6651570 Msa0274780:intron 45.0%
ATAGGCTTGACAAATGGCCA+AGG - chr2_3:6651786-6651805 Msa0274780:intron 45.0%
TAGGCTTGACAAATGGCCAA+GGG - chr2_3:6651787-6651806 Msa0274780:intron 45.0%
AACCCACTAAAAAGAGGGAC+GGG + chr2_3:6651833-6651852 None:intergenic 45.0%
! ATGGTAGCTTTGCTCTTCTC+TGG - chr2_3:6652220-6652239 Msa0274780:CDS 45.0%
! ATTGGTGTCCTTGCTGAGAA+AGG - chr2_3:6652262-6652281 Msa0274780:CDS 45.0%
GTGAGTTTCCTTTCTCAGCA+AGG + chr2_3:6652273-6652292 None:intergenic 45.0%
CTTCGATGAAGTCTCAAAGC+AGG + chr2_3:6652409-6652428 None:intergenic 45.0%
! GTCTCCAAAAGCATGCATCT+AGG + chr2_3:6652437-6652456 None:intergenic 45.0%
!! TAACAAAATAATTAAATAAT+TGG + chr2_3:6647734-6647753 None:intergenic 5.0%
!!! TTTTAATATATTTTATTGTT+AGG + chr2_3:6647785-6647804 None:intergenic 5.0%
!!! TTATTAAAATTTTTAAAAAC+CGG + chr2_3:6648355-6648374 None:intergenic 5.0%
!!! GAAAAAAAATTAAAAAATTT+TGG - chr2_3:6649302-6649321 Msa0274780:intron 5.0%
!! AAAAAAATATTAAAAAATTC+TGG - chr2_3:6649342-6649361 Msa0274780:intron 5.0%
!!! TATTTTTAAATATAAGAAAT+CGG - chr2_3:6650811-6650830 Msa0274780:intron 5.0%
!! AAAAAAAAAAAAAAGTAAAA+TGG + chr2_3:6651715-6651734 None:intergenic 5.0%
!!! TTATTGATTTTTTTTTTTTA+CGG + chr2_3:6652060-6652079 None:intergenic 5.0%
!! GGTTCTAAGGCTTTGTGCCT+TGG - chr2_3:6646723-6646742 Msa0274780:CDS 50.0%
AGGGTCCGACATTCAAATCC+CGG + chr2_3:6647344-6647363 None:intergenic 50.0%
TGGGGTTGAGAGATGACATG+GGG - chr2_3:6648153-6648172 Msa0274780:intron 50.0%
AGCAAGCTATTGGCCAAGCA+TGG - chr2_3:6648233-6648252 Msa0274780:intron 50.0%
AAACCTTGCAATTTCGGGGG+GGG + chr2_3:6649102-6649121 None:intergenic 50.0%
CAAACCTTGCAATTTCGGGG+GGG + chr2_3:6649103-6649122 None:intergenic 50.0%
!! CATGGTTGGCTCGAATTGAC+CGG + chr2_3:6650616-6650635 None:intergenic 50.0%
AGGCTTGACAAATGGCCAAG+GGG - chr2_3:6651788-6651807 Msa0274780:intron 50.0%
AAAGAGGGACGGGCCTAAAT+GGG + chr2_3:6651823-6651842 None:intergenic 50.0%
AAAAGAGGGACGGGCCTAAA+TGG + chr2_3:6651824-6651843 None:intergenic 50.0%
GCGGATAGACTTAAGAGACC+AGG - chr2_3:6651860-6651879 Msa0274780:intron 50.0%
GCTTTGCTCTTCTCTGGCAA+TGG - chr2_3:6652226-6652245 Msa0274780:CDS 50.0%
TCAAACATGCAGCAGCAGCT+TGG + chr2_3:6652342-6652361 None:intergenic 50.0%
!! CAGGAAGCATCACAAGAGAG+AGG + chr2_3:6652390-6652409 None:intergenic 50.0%
GGTGGCCGGGATTTGAATGT+CGG - chr2_3:6647336-6647355 Msa0274780:intron 55.0%
TCATATATGCCCCACGGGCT+AGG - chr2_3:6647700-6647719 Msa0274780:intron 55.0%
GGGGTTGAGAGATGACATGG+GGG - chr2_3:6648154-6648173 Msa0274780:intron 55.0%
GACACGCGGAAGCAAGCTAT+TGG - chr2_3:6648223-6648242 Msa0274780:intron 55.0%
AACCTTGCAATTTCGGGGGG+GGG + chr2_3:6649101-6649120 None:intergenic 55.0%
ATCGGATCGACGGACACTTG+TGG - chr2_3:6651529-6651548 Msa0274780:intron 55.0%
TTGACAAATGGCCAAGGGGC+TGG - chr2_3:6651792-6651811 Msa0274780:intron 55.0%
AATGGGACATACCAGCCCCT+TGG + chr2_3:6651806-6651825 None:intergenic 55.0%
! GGGGCTGGTATGTCCCATTT+AGG - chr2_3:6651807-6651826 Msa0274780:intron 55.0%
! AGGCCCGTCCCTCTTTTTAG+TGG - chr2_3:6651827-6651846 Msa0274780:intron 55.0%
!! GGCCCGTCCCTCTTTTTAGT+GGG - chr2_3:6651828-6651847 Msa0274780:intron 55.0%
AATGGAGCTGCCTGGGCTAT+TGG - chr2_3:6652244-6652263 Msa0274780:CDS 55.0%
AGCAAGGACACCAATAGCCC+AGG + chr2_3:6652257-6652276 None:intergenic 55.0%
TGTTGCACACGCGCCATGCT+TGG + chr2_3:6648249-6648268 None:intergenic 60.0%
GCAGGAGAGGCAGAGAGAGA+AGG - chr2_3:6648283-6648302 Msa0274780:intron 60.0%
ACCTTGCAATTTCGGGGGGG+GGG + chr2_3:6649100-6649119 None:intergenic 60.0%
GGATCGACGGACACTTGTGG+CGG - chr2_3:6651532-6651551 Msa0274780:intron 60.0%
TCTCTGGCAATGGAGCTGCC+TGG - chr2_3:6652236-6652255 Msa0274780:CDS 60.0%
CTCTGGCAATGGAGCTGCCT+GGG - chr2_3:6652237-6652256 Msa0274780:CDS 60.0%
!! TATGCCCCACGGGCTAGGCT+AGG - chr2_3:6647705-6647724 Msa0274780:intron 65.0%
GAGTCCTAGCCTAGCCCGTG+GGG + chr2_3:6647712-6647731 None:intergenic 65.0%
GGAGTCCTAGCCTAGCCCGT+GGG + chr2_3:6647713-6647732 None:intergenic 65.0%
TGGAGTCCTAGCCTAGCCCG+TGG + chr2_3:6647714-6647733 None:intergenic 65.0%
ACCGCTGACACAGGGACACG+CGG - chr2_3:6648209-6648228 Msa0274780:intron 65.0%
TCCGCGTGTCCCTGTGTCAG+CGG + chr2_3:6648213-6648232 None:intergenic 65.0%
GTGTGCAACACGCGCGAGTG+TGG - chr2_3:6648259-6648278 Msa0274780:intron 65.0%
AACACGCGCGAGTGTGGTGC+AGG - chr2_3:6648265-6648284 Msa0274780:intron 65.0%
TTGCAATTTCGGGGGGGGGG+GGG + chr2_3:6649097-6649116 None:intergenic 65.0%
CTTGCAATTTCGGGGGGGGG+GGG + chr2_3:6649098-6649117 None:intergenic 65.0%
CCTTGCAATTTCGGGGGGGG+GGG + chr2_3:6649099-6649118 None:intergenic 65.0%
GCGCGAGTGTGGTGCAGGAG+AGG - chr2_3:6648270-6648289 Msa0274780:intron 70.0%
TGCAATTTCGGGGGGGGGGG+GGG + chr2_3:6649096-6649115 None:intergenic 70.0%
CCCCCCCCCCCGAAATTGCA+AGG - chr2_3:6649096-6649115 Msa0274780:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 6646287 6652770 6646287 ID=Msa0274780;Name=Msa0274780
chr2_3 mRNA 6646287 6652770 6646287 ID=Msa0274780-mRNA-1;Parent=Msa0274780;Name=Msa0274780-mRNA-1;_AED=0.03;_eAED=0.03;_QI=362|1|1|1|1|1|2|332|189
chr2_3 exon 6646287 6646958 6646287 ID=Msa0274780-mRNA-1:exon:3145;Parent=Msa0274780-mRNA-1
chr2_3 exon 6652179 6652770 6652179 ID=Msa0274780-mRNA-1:exon:3144;Parent=Msa0274780-mRNA-1
chr2_3 five_prime_UTR 6652409 6652770 6652409 ID=Msa0274780-mRNA-1:five_prime_utr;Parent=Msa0274780-mRNA-1
chr2_3 CDS 6652179 6652408 6652179 ID=Msa0274780-mRNA-1:cds;Parent=Msa0274780-mRNA-1
chr2_3 CDS 6646619 6646958 6646619 ID=Msa0274780-mRNA-1:cds;Parent=Msa0274780-mRNA-1
chr2_3 three_prime_UTR 6646287 6646618 6646287 ID=Msa0274780-mRNA-1:three_prime_utr;Parent=Msa0274780-mRNA-1
Gene Sequence

>Msa0274780

ATGGAGGTTCAAAGTAGTAAAGAGTTGAAGGAAATTGTGGTGGTAAAGTCTTCACTAGAAGGAACTTGTAGTTTGGTTCTAAGGCTTTGTGCCTTGGTTCTAACACTTACGGCTGCTATAGTACTTGTTGCAGATAAACAAACCACAGTTGTTCCTGTTAAGATTTCAGATTCTTTACCACCTTTGGATGTTCCTGTTACTGCTAAGTGGCAATACATGTCTGCCTATGTGTATTTTGTGGTGGCAAATGTTATAGCATTTGCATATGCAACCTTGTCTTTCATTATTGCTCTTGCAAATGGGCATAAAAGCAAATGGTTAGTGACATTGGTGACTCTACTTGACGCAATAATGGTAGCTTTGCTCTTCTCTGGCAATGGAGCTGCCTGGGCTATTGGTGTCCTTGCTGAGAAAGGAAACTCACATGTGCTATGGAACAAAGTGTGTCATGTCTTTGACAAATTTTGCAACCAAGCTGCTGCTGCATGTTTGATTTCACTTCTTGGATCAGTATTTTTCCTCTCTCTTGTGATGCTTCCTGCTTTGAGACTTCATCGAAGAAGAACCTAG

Protein sequence

>Msa0274780

MEVQSSKELKEIVVVKSSLEGTCSLVLRLCALVLTLTAAIVLVADKQTTVVPVKISDSLPPLDVPVTAKWQYMSAYVYFVVANVIAFAYATLSFIIALANGHKSKWLVTLVTLLDAIMVALLFSGNGAAWAIGVLAEKGNSHVLWNKVCHVFDKFCNQAAAACLISLLGSVFFLSLVMLPALRLHRRRT*