AlfalfaGEDB | Msa0891700

M. sativa cultivar zhongmu-4 / Msa0891700

KEGG: -
GO: -
PFAM: PF03141.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0891700	XP_013443354.2	97.335	638	15	1	1	638	1	636	0.0	1296

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0891700	sp\|O80844\|PMTG_ARATH	62.379	622	215	6	24	636	12	623	0.0	842

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0891700	A0A396HLI5	97.335	638	15	1	1	638	1	636	0.0	1296

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021290	Msa0891700	0.820493	6.661447e-53	-8.615850e-47
Msa0021320	Msa0891700	0.817736	2.825433e-52	-8.615850e-47
Msa0192050	Msa0891700	0.801080	1.065682e-48	-8.615850e-47
Msa0356640	Msa0891700	0.829310	5.528275e-55	-8.615850e-47
Msa0388250	Msa0891700	0.803421	3.515012e-49	-8.615850e-47
Msa0495620	Msa0891700	0.819646	1.041117e-52	-8.615850e-47
Msa0630440	Msa0891700	0.830485	2.860397e-55	-8.615850e-47
Msa0891700	Msa0916400	0.873651	1.246050e-67	-8.615850e-47
Msa0891700	Msa0956350	0.837048	6.541083e-57	-8.615850e-47
Msa0891700	Msa0991630	0.901675	2.107440e-78	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0891700	MtrunA17_Chr6g0472571	97.335	638	15	1	1	638	1	636	1296
Msa0891700	MtrunA17_Chr1g0203741	71.569	612	156	6	24	629	19	618	921
Msa0891700	MtrunA17_Chr7g0246701	63.465	635	211	6	17	636	5	633	854
Msa0891700	MtrunA17_Chr8g0350391	62.679	627	216	5	22	636	18	638	853
Msa0891700	MtrunA17_Chr8g0388881	58.292	609	242	6	32	636	28	628	771
Msa0891700	MtrunA17_Chr4g0055031	55.974	611	254	7	27	637	17	612	737
Msa0891700	MtrunA17_Chr8g0361791	54.690	629	258	8	15	637	2	609	713
Msa0891700	MtrunA17_Chr5g0416991	55.065	612	249	8	31	637	18	608	697
Msa0891700	MtrunA17_Chr3g0092501	52.209	611	260	8	31	637	21	603	652
Msa0891700	MtrunA17_Chr7g0214551	53.571	532	236	5	87	612	26	552	608

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0891700	AT2G45750.1	62.379	622	215	6	24	636	12	623	842
Msa0891700	AT4G00750.1	60.692	636	227	9	14	637	7	631	823
Msa0891700	AT1G33170.1	56.381	619	250	5	32	633	24	639	762
Msa0891700	AT4G10440.1	58.049	615	245	6	24	634	17	622	761
Msa0891700	AT1G26850.2	55.195	616	256	7	25	634	13	614	716
Msa0891700	AT1G26850.1	55.195	616	256	7	25	634	13	614	716
Msa0891700	AT4G18030.1	54.925	599	255	5	32	630	22	605	699
Msa0891700	AT2G43200.2	52.207	521	240	5	107	623	91	606	581
Msa0891700	AT2G43200.1	52.207	521	240	5	107	623	91	606	581
Msa0891700	AT1G26850.3	52.381	504	220	7	25	522	13	502	545

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Find 175 sgRNAs with CRISPR-Local

Find 467 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATGAAATGATGCAA+AGG	0.586323	6_1:+67759094	None:intergenic
AAAAGTTTCTCTCTTTCAAG+AGG	0.510531	6_1:+67752109	None:intergenic
AAAGAGCATAATCAATGGCT+TGG	0.481691	6_1:-67752167	Msa0891700:CDS
AAAGGATTCTTGTAACCGTT+TGG	0.425376	6_1:+67758733	None:intergenic
AAAGTAAAGAGCATAATCAA+TGG	0.558091	6_1:-67752172	Msa0891700:CDS
AAATTGTGGACCATGAAGAT+GGG	0.601433	6_1:-67752132	Msa0891700:CDS
AACAAAGAAGAAATTTCAGG+TGG	0.587726	6_1:-67753087	Msa0891700:CDS
AACAATCAACTTGGAAAAGC+TGG	0.441002	6_1:-67752925	Msa0891700:CDS
AACAGTGTCAATTGCACCAA+GGG	0.515618	6_1:-67755421	Msa0891700:CDS
AACCCCACCTAGGATTTCAA+AGG	0.579195	6_1:-67753031	Msa0891700:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGTGAGTTATTATAGATTG+AGG	+	chr6_1:67751761-67751780	None:intergenic	30.0%
ATGTGAGAAGAAATCTAAGT+TGG	+	chr6_1:67752090-67752109	None:intergenic	30.0%
TTTCTATCTCTTTCTCTGTT+TGG	-	chr6_1:67752568-67752587	Msa0891700:intron	30.0%
TTCTATCTCTTTCTCTGTTT+GGG	-	chr6_1:67752569-67752588	Msa0891700:intron	30.0%
AAAACAATGGAGAGAGAAAA+AGG	-	chr6_1:67752888-67752907	Msa0891700:CDS	30.0%
TGTGAAAGCAAGTAATTGAA+AGG	+	chr6_1:67753000-67753019	None:intergenic	30.0%
ATATGATAGAAACCTTCCTT+AGG	+	chr6_1:67753426-67753445	None:intergenic	30.0%
TCATATGAACCTAACTAACA+AGG	-	chr6_1:67753440-67753459	Msa0891700:intron	30.0%
TGATAAAGACCTTGTTAGTT+AGG	+	chr6_1:67753452-67753471	None:intergenic	30.0%
CAACGATTTACATTTGTCAT+GGG	+	chr6_1:67753652-67753671	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	67751726	67759331	67751726	ID=Msa0891700;Name=Msa0891700
chr6_1	mRNA	67751726	67759331	67751726	ID=Msa0891700-mRNA-1;Parent=Msa0891700;Name=Msa0891700-mRNA-1;_AED=0.04;_eAED=0.04;_QI=114\|1\|1\|1\|1\|1\|6\|328\|638
chr6_1	exon	67751726	67752285	67751726	ID=Msa0891700-mRNA-1:exon:12043;Parent=Msa0891700-mRNA-1
chr6_1	exon	67752603	67752680	67752603	ID=Msa0891700-mRNA-1:exon:12042;Parent=Msa0891700-mRNA-1
chr6_1	exon	67752763	67753155	67752763	ID=Msa0891700-mRNA-1:exon:12041;Parent=Msa0891700-mRNA-1
chr6_1	exon	67754511	67754799	67754511	ID=Msa0891700-mRNA-1:exon:12040;Parent=Msa0891700-mRNA-1
chr6_1	exon	67755274	67755484	67755274	ID=Msa0891700-mRNA-1:exon:12039;Parent=Msa0891700-mRNA-1
chr6_1	exon	67758504	67759331	67758504	ID=Msa0891700-mRNA-1:exon:12038;Parent=Msa0891700-mRNA-1
chr6_1	five_prime_UTR	67759218	67759331	67759218	ID=Msa0891700-mRNA-1:five_prime_utr;Parent=Msa0891700-mRNA-1
chr6_1	CDS	67758504	67759217	67758504	ID=Msa0891700-mRNA-1:cds;Parent=Msa0891700-mRNA-1
chr6_1	CDS	67755274	67755484	67755274	ID=Msa0891700-mRNA-1:cds;Parent=Msa0891700-mRNA-1
chr6_1	CDS	67754511	67754799	67754511	ID=Msa0891700-mRNA-1:cds;Parent=Msa0891700-mRNA-1
chr6_1	CDS	67752763	67753155	67752763	ID=Msa0891700-mRNA-1:cds;Parent=Msa0891700-mRNA-1
chr6_1	CDS	67752603	67752680	67752603	ID=Msa0891700-mRNA-1:cds;Parent=Msa0891700-mRNA-1
chr6_1	CDS	67752054	67752285	67752054	ID=Msa0891700-mRNA-1:cds;Parent=Msa0891700-mRNA-1
chr6_1	three_prime_UTR	67751726	67752053	67751726	ID=Msa0891700-mRNA-1:three_prime_utr;Parent=Msa0891700-mRNA-1

Gene Sequence

>Msa0891700

ATGGCAAATGGTACCTCAACTTCACCAAAACCCTTCAAACCCTCCAAATACACTTCCTTTTTCAACTGCAAAAAAACAAATCTTTACTCTTTCATAGCTCTCCTTTGCATCATTTCATACTTTTTAGGCTCATACCAAAACAACAACACTACATCAACTAACAAAAATATCCAAATCAAGAAAGTCACACCAAAATGTCTCCAAAAAAATCAAAATCCAAAAACAACAAACACAAAAACAAAAACAACCAACTTAGATTTCTTCTCACATCACAACTTAACAAATCCAACAACCACGTCCACAACAACATCCTCTCAATACCCACCATGCACCCCCTCTTTAACTGACTACACCCCCTGTGAAGACCACACGCGCTCTCTCAAACACACGCGCGACAGAATGATATACCGCGAACGACACTGTCCTAAGAAACATGAAATCTTAAAGTGTCGTGTTCCAGCACCAAACGGTTACAAGAATCCTTTCCCATGGCCCACAAGTAGAGACATGGCATGGTATGCAAATGTACCTTACCGTCATTTAACGGTGGAAAAAGCTGGTCAAAATTGGATCCGTTTTGACGGTGATAAGTTCCGTTTTCCTGGTGGTGGTACTATGTTTCCTAATGGTGCTGATAAGTACATTGATGATATTGGGAAGTTGATTAATCTTGAAGATGGTTCTGTTCGAACTGCTGTTGATACTGGCTGTGGGGTTGCTAGTTGGGGAGCCTATCTACTATCACGTGACATATTAACAGTGTCAATTGCACCAAGGGATACTCATGAAGCACAAGTTCAATTTGCTCTTGAAAGAGGTGTTCCTGCAATTATTGGGGTCTTTGCTTCAAAGAGATTACCTTTCCCTTCTAGAGCCTTTGACATGGCACATTGTTCTCGCTGCCTTATTCCATGGCCTGAATATGATGGACTTTATCTAAATGAAGTTGATAGAATTCTACGTCCTGGTGGGTATTGGATTCTATCTGGTCCACCAATTCGCTGGAAGAAATATTGGAAAGGATGGGAAAGAACAAAAGAAGACTTGAATGAAGAGCAAACCAAAATTGAGAATGTAGCTAAAAGCCTTTGTTGGAATAAAATAGTGGAGAAAGGTGATATTGCTATTTGGCAGAAACCAAAAAATCATTTAGATTGCAAATTCACTCAAAATAGGCCTTTTTGCCAAGAGCAGAATAATCCTGATAAAGCATGGTACACAAACATGCAAACATGTTTAAATCCACTCCCTAAAGTGTCCAACAAAGAAGAAATTTCAGGTGGGGAATTAAACAATTGGCCTCAAAGACTAAAATCAACCCCACCTAGGATTTCAAAGGGGACCATTAAAGGTGTCACACCTCAAACATTCTCAAAAGACAATCAACTATGGAACAAAAGAGTATCATATTACAAAAAAGTTAACAATCAACTTGGAAAAGCTGGTAGATACAGGAACCTATTAGACATGAATGCTTATTTGGGTGGATTTGCAGCTTCACTTGTTAAATATCCTATTTGGGTTATGAATGTGGTTCCTATTCAAGCTAAAGTTGATACACTTGGAGCAATATATGAAAGAGGGTTGATTGGAATGTATCATAATTGGTGTGAAGCTATGTCTACTTATCCTAGAACTTATGACCTAATTCATGCTGATTCTGTGTTTAGCCTTTATAATGACAGATGTGAATTGGAAGACATATTGCTAGAGATGGATAGGATTCTTAGACCAGAAGGAAGTGTAATAATTAGAGATGATGTTGATATATTGGTCAAAGTAAAGAGCATAATCAATGGCTTGGAATGGGAGAGTCAAATTGTGGACCATGAAGATGGGCCTCTTGAAAGAGAGAAACTTTTATTTGCTGTGAAGAAATATTGGACCTCTCCTGCCTCAAATGACAATACTATTTAG

Protein sequence

>Msa0891700

MANGTSTSPKPFKPSKYTSFFNCKKTNLYSFIALLCIISYFLGSYQNNNTTSTNKNIQIKKVTPKCLQKNQNPKTTNTKTKTTNLDFFSHHNLTNPTTTSTTTSSQYPPCTPSLTDYTPCEDHTRSLKHTRDRMIYRERHCPKKHEILKCRVPAPNGYKNPFPWPTSRDMAWYANVPYRHLTVEKAGQNWIRFDGDKFRFPGGGTMFPNGADKYIDDIGKLINLEDGSVRTAVDTGCGVASWGAYLLSRDILTVSIAPRDTHEAQVQFALERGVPAIIGVFASKRLPFPSRAFDMAHCSRCLIPWPEYDGLYLNEVDRILRPGGYWILSGPPIRWKKYWKGWERTKEDLNEEQTKIENVAKSLCWNKIVEKGDIAIWQKPKNHLDCKFTQNRPFCQEQNNPDKAWYTNMQTCLNPLPKVSNKEEISGGELNNWPQRLKSTPPRISKGTIKGVTPQTFSKDNQLWNKRVSYYKKVNNQLGKAGRYRNLLDMNAYLGGFAASLVKYPIWVMNVVPIQAKVDTLGAIYERGLIGMYHNWCEAMSTYPRTYDLIHADSVFSLYNDRCELEDILLEMDRILRPEGSVIIRDDVDILVKVKSIINGLEWESQIVDHEDGPLEREKLLFAVKKYWTSPASNDNTI*