Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356640 | XP_013443065.1 | 99.183 | 367 | 3 | 0 | 1 | 367 | 1 | 367 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356640 | A0A072TU53 | 99.183 | 367 | 3 | 0 | 1 | 367 | 1 | 367 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021290 | Msa0356640 | 0.863911 | 1.775000e-64 | -8.615850e-47 |
| Msa0021320 | Msa0356640 | 0.861940 | 7.205427e-64 | -8.615850e-47 |
| Msa0045620 | Msa0356640 | 0.835994 | 1.213252e-56 | -8.615850e-47 |
| Msa0050530 | Msa0356640 | 0.802976 | 4.344900e-49 | -8.615850e-47 |
| Msa0055880 | Msa0356640 | 0.829120 | 6.150083e-55 | -8.615850e-47 |
| Msa0056000 | Msa0356640 | 0.831276 | 1.829907e-55 | -8.615850e-47 |
| Msa0063190 | Msa0356640 | 0.814952 | 1.185614e-51 | -8.615850e-47 |
| Msa0080370 | Msa0356640 | 0.812694 | 3.727497e-51 | -8.615850e-47 |
| Msa0089540 | Msa0356640 | 0.805034 | 1.622297e-49 | -8.615850e-47 |
| Msa0100600 | Msa0356640 | 0.840999 | 6.197763e-58 | -8.615850e-47 |
| Msa0100890 | Msa0356640 | 0.816181 | 6.313713e-52 | -8.615850e-47 |
| Msa0131810 | Msa0356640 | 0.813243 | 2.825240e-51 | -8.615850e-47 |
| Msa0132460 | Msa0356640 | 0.811439 | 6.996662e-51 | -8.615850e-47 |
| Msa0134580 | Msa0356640 | 0.806879 | 6.639398e-50 | -8.615850e-47 |
| Msa0153510 | Msa0356640 | 0.830132 | 3.487936e-55 | -8.615850e-47 |
| Msa0173250 | Msa0356640 | 0.831209 | 1.900372e-55 | -8.615850e-47 |
| Msa0182050 | Msa0356640 | 0.808156 | 3.557245e-50 | -8.615850e-47 |
| Msa0185690 | Msa0356640 | 0.808995 | 2.354886e-50 | -8.615850e-47 |
| Msa0192050 | Msa0356640 | 0.822276 | 2.583601e-53 | -8.615850e-47 |
| Msa0260980 | Msa0356640 | 0.812189 | 4.804039e-51 | -8.615850e-47 |
| Msa0304250 | Msa0356640 | 0.807220 | 5.623129e-50 | -8.615850e-47 |
| Msa0356640 | Msa0388250 | 0.820700 | 5.971579e-53 | -8.615850e-47 |
| Msa0356640 | Msa0401060 | 0.875341 | 3.325978e-68 | -8.615850e-47 |
| Msa0356640 | Msa0416210 | 0.853041 | 3.104624e-61 | -8.615850e-47 |
| Msa0356640 | Msa0433630 | 0.843172 | 1.649624e-58 | -8.615850e-47 |
| Msa0356640 | Msa0436440 | 0.828469 | 8.834758e-55 | -8.615850e-47 |
| Msa0356640 | Msa0447870 | 0.824608 | 7.361374e-54 | -8.615850e-47 |
| Msa0356640 | Msa0453530 | 0.817787 | 2.751248e-52 | -8.615850e-47 |
| Msa0356640 | Msa0458100 | 0.831574 | 1.545751e-55 | -8.615850e-47 |
| Msa0356640 | Msa0495620 | 0.994293 | 4.373451e-206 | -8.615850e-47 |
| Msa0356640 | Msa0521510 | 0.847539 | 1.084838e-59 | -8.615850e-47 |
| Msa0356640 | Msa0521530 | 0.818275 | 2.134434e-52 | -8.615850e-47 |
| Msa0356640 | Msa0526150 | 0.810747 | 9.883546e-51 | -8.615850e-47 |
| Msa0356640 | Msa0566460 | 0.807242 | 5.561112e-50 | -8.615850e-47 |
| Msa0356640 | Msa0572360 | 0.837180 | 6.052818e-57 | -8.615850e-47 |
| Msa0356640 | Msa0572830 | 0.801924 | 7.157061e-49 | -8.615850e-47 |
| Msa0356640 | Msa0580940 | 0.815771 | 7.795281e-52 | -8.615850e-47 |
| Msa0356640 | Msa0618990 | 0.805491 | 1.301303e-49 | -8.615850e-47 |
| Msa0356640 | Msa0623310 | 0.846384 | 2.247493e-59 | -8.615850e-47 |
| Msa0356640 | Msa0630440 | 0.836475 | 9.157676e-57 | -8.615850e-47 |
| Msa0356640 | Msa0652160 | 0.838771 | 2.359127e-57 | -8.615850e-47 |
| Msa0356640 | Msa0658120 | 0.802997 | 4.302123e-49 | -8.615850e-47 |
| Msa0356640 | Msa0687370 | 0.804807 | 1.809324e-49 | -8.615850e-47 |
| Msa0356640 | Msa0689660 | 0.834311 | 3.225291e-56 | -8.615850e-47 |
| Msa0356640 | Msa0689830 | 0.809529 | 1.809286e-50 | -8.615850e-47 |
| Msa0356640 | Msa0694710 | 0.814458 | 1.525277e-51 | -8.615850e-47 |
| Msa0356640 | Msa0707260 | 0.815172 | 1.059398e-51 | -8.615850e-47 |
| Msa0356640 | Msa0708630 | 0.811201 | 7.880504e-51 | -8.615850e-47 |
| Msa0356640 | Msa0846900 | 0.823936 | 1.059158e-53 | -8.615850e-47 |
| Msa0356640 | Msa0891700 | 0.829310 | 5.528275e-55 | -8.615850e-47 |
| Msa0356640 | Msa0900830 | 0.819911 | 9.054831e-53 | -8.615850e-47 |
| Msa0356640 | Msa0925330 | 0.834242 | 3.357131e-56 | -8.615850e-47 |
| Msa0356640 | Msa0945900 | 0.806001 | 1.016885e-49 | -8.615850e-47 |
| Msa0356640 | Msa0965800 | 0.820177 | 7.870590e-53 | -8.615850e-47 |
| Msa0356640 | Msa0966120 | 0.841293 | 5.189297e-58 | -8.615850e-47 |
| Msa0356640 | Msa0991630 | 0.804136 | 2.496397e-49 | -8.615850e-47 |
| Msa0356640 | Msa1001620 | 0.839503 | 1.524199e-57 | -8.615850e-47 |
| Msa0356640 | Msa1019180 | 0.822401 | 2.415869e-53 | -8.615850e-47 |
| Msa0356640 | Msa1021560 | 0.834422 | 3.024836e-56 | -8.615850e-47 |
| Msa0356640 | Msa1025200 | 0.832712 | 8.084766e-56 | -8.615850e-47 |
| Msa0356640 | Msa1025220 | 0.842260 | 2.883019e-58 | -8.615850e-47 |
| Msa0356640 | Msa1026710 | 0.804381 | 2.219878e-49 | -8.615850e-47 |
| Msa0356640 | Msa1038860 | 0.827687 | 1.363373e-54 | -8.615850e-47 |
| Msa0356640 | Msa1050260 | 0.801730 | 7.844317e-49 | -8.615850e-47 |
| Msa0356640 | Msa1078080 | 0.822040 | 2.929734e-53 | -8.615850e-47 |
| Msa0356640 | Msa1085680 | 0.801222 | 9.971109e-49 | -8.615850e-47 |
| Msa0356640 | Msa1104110 | 0.813850 | 2.077452e-51 | -8.615850e-47 |
| Msa0356640 | Msa1124210 | 0.816999 | 4.138517e-52 | -8.615850e-47 |
| Msa0356640 | Msa1147700 | 0.832713 | 8.079900e-56 | -8.615850e-47 |
| Msa0356640 | Msa1148930 | 0.827940 | 1.185218e-54 | -8.615850e-47 |
| Msa0356640 | Msa1220580 | 0.851315 | 9.613818e-61 | -8.615850e-47 |
| Msa0356640 | Msa1226370 | 0.833450 | 5.296731e-56 | -8.615850e-47 |
| Msa0356640 | Msa1244920 | 0.801302 | 9.601296e-49 | -8.615850e-47 |
| Msa0356640 | Msa1255850 | 0.805357 | 1.388158e-49 | -8.615850e-47 |
| Msa0356640 | Msa1282300 | 0.812150 | 4.900992e-51 | -8.615850e-47 |
| Msa0356640 | Msa1296090 | 0.828339 | 9.500910e-55 | -8.615850e-47 |
| Msa0356640 | Msa1301980 | 0.803876 | 2.828073e-49 | -8.615850e-47 |
| Msa0356640 | Msa1333500 | 0.801976 | 6.984300e-49 | -8.615850e-47 |
| Msa0356640 | Msa1334560 | 0.848621 | 5.453659e-60 | -8.615850e-47 |
| Msa0356640 | Msa1352580 | 0.841010 | 6.157180e-58 | -8.615850e-47 |
| Msa0356640 | Msa1363010 | 0.833428 | 5.363044e-56 | -8.615850e-47 |
| Msa0356640 | Msa1368170 | 0.835492 | 1.625618e-56 | -8.615850e-47 |
| Msa0356640 | Msa1371800 | 0.830672 | 2.574214e-55 | -8.615850e-47 |
| Msa0356640 | Msa1376310 | 0.829568 | 4.786874e-55 | -8.615850e-47 |
| Msa0356640 | Msa1379940 | 0.859967 | 2.866030e-63 | -8.615850e-47 |
| Msa0356640 | Msa1385570 | 0.837792 | 4.216486e-57 | -8.615850e-47 |
| Msa0356640 | Msa1388890 | 0.840510 | 8.325252e-58 | -8.615850e-47 |
| Msa0356640 | Msa1395050 | 0.805588 | 1.241744e-49 | -8.615850e-47 |
| Msa0356640 | Msa1402010 | 0.810483 | 1.126991e-50 | -8.615850e-47 |
| Msa0356640 | Msa1408160 | 0.806797 | 6.909274e-50 | -8.615850e-47 |
| Msa0356640 | Msa1419900 | 0.810150 | 1.330209e-50 | -8.615850e-47 |
| Msa0356640 | Msa1420830 | 0.847444 | 1.152363e-59 | -8.615850e-47 |
| Msa0356640 | Msa1448960 | 0.806791 | 6.930477e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356640 | MtrunA17_Chr3g0089391 | 99.183 | 367 | 3 | 0 | 1 | 367 | 1 | 367 | 0.0 | 748 |
| Msa0356640 | MtrunA17_Chr4g0019581 | 78.804 | 368 | 77 | 1 | 1 | 367 | 72 | 439 | 0.0 | 630 |
| Msa0356640 | MtrunA17_Chr4g0019571 | 80.654 | 367 | 71 | 0 | 1 | 367 | 4 | 370 | 0.0 | 625 |
| Msa0356640 | MtrunA17_Chr4g0019601 | 78.474 | 367 | 79 | 0 | 1 | 367 | 4 | 370 | 0.0 | 620 |
| Msa0356640 | MtrunA17_Chr1g0149051 | 56.024 | 332 | 144 | 2 | 32 | 361 | 37 | 368 | 5.87e-133 | 385 |
| Msa0356640 | MtrunA17_Chr2g0332541 | 50.298 | 336 | 161 | 2 | 32 | 361 | 26 | 361 | 4.21e-119 | 349 |
| Msa0356640 | MtrunA17_Chr2g0286051 | 43.243 | 333 | 188 | 1 | 32 | 363 | 33 | 365 | 1.04e-92 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356640 | AT3G08030.1 | 68.103 | 348 | 110 | 1 | 21 | 367 | 18 | 365 | 4.04e-177 | 496 |
| Msa0356640 | AT3G08030.2 | 69.350 | 323 | 98 | 1 | 46 | 367 | 1 | 323 | 2.40e-168 | 473 |
| Msa0356640 | AT2G41800.1 | 61.671 | 347 | 129 | 3 | 22 | 364 | 21 | 367 | 1.33e-154 | 440 |
| Msa0356640 | AT2G41810.1 | 58.470 | 366 | 147 | 3 | 3 | 363 | 1 | 366 | 3.13e-152 | 434 |
| Msa0356640 | AT5G25460.1 | 53.541 | 353 | 163 | 1 | 10 | 361 | 9 | 361 | 8.41e-140 | 402 |
| Msa0356640 | AT5G11420.1 | 55.891 | 331 | 145 | 1 | 32 | 361 | 28 | 358 | 4.96e-139 | 400 |
| Msa0356640 | AT4G32460.2 | 52.825 | 354 | 159 | 2 | 9 | 361 | 11 | 357 | 8.93e-135 | 389 |
| Msa0356640 | AT4G32460.1 | 52.825 | 354 | 159 | 2 | 9 | 361 | 11 | 357 | 8.93e-135 | 389 |
| Msa0356640 | AT4G32460.4 | 55.521 | 317 | 140 | 1 | 46 | 361 | 1 | 317 | 3.79e-130 | 376 |
| Msa0356640 | AT4G32460.3 | 55.521 | 317 | 140 | 1 | 46 | 361 | 1 | 317 | 3.79e-130 | 376 |
| Msa0356640 | AT1G80240.1 | 50.862 | 348 | 169 | 2 | 15 | 361 | 14 | 360 | 1.73e-121 | 355 |
| Msa0356640 | AT1G29980.1 | 41.547 | 349 | 194 | 2 | 25 | 363 | 34 | 382 | 8.92e-94 | 286 |
| Msa0356640 | AT1G29980.2 | 42.353 | 340 | 186 | 2 | 34 | 363 | 7 | 346 | 1.17e-93 | 285 |
| Msa0356640 | AT2G34510.1 | 42.857 | 336 | 186 | 2 | 34 | 363 | 43 | 378 | 2.01e-93 | 285 |
| Msa0356640 | AT2G34510.2 | 44.863 | 292 | 155 | 2 | 78 | 363 | 1 | 292 | 2.74e-85 | 261 |
| Msa0356640 | AT5G14150.2 | 28.451 | 355 | 221 | 11 | 31 | 367 | 22 | 361 | 7.62e-31 | 121 |
| Msa0356640 | AT5G14150.1 | 28.451 | 355 | 221 | 11 | 31 | 367 | 22 | 361 | 7.62e-31 | 121 |
Find 98 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTGGTTGAGTTGAAAAT+TGG | 0.165055 | 3_1:+36202133 | None:intergenic |
| TTGGTATTCTTTAGGTCTTT+AGG | 0.165937 | 3_1:+36203636 | None:intergenic |
| CCCTTCCCTTCGGATTTAAA+TGG | 0.190979 | 3_1:+36201827 | None:intergenic |
| CAACTCTATGCTTTAATTCT+TGG | 0.196335 | 3_1:-36203444 | Msa0356640:CDS |
| TGGTATTCTTTAGGTCTTTA+GGG | 0.221241 | 3_1:+36203637 | None:intergenic |
| AAACCATTGATTTCCCATTT+TGG | 0.221713 | 3_1:+36203591 | None:intergenic |
| TTTGCAGTTTATCTTCAAAA+TGG | 0.237288 | 3_1:-36203681 | Msa0356640:intron |
| TTCAATTTCTCAAACAATTA+AGG | 0.237533 | 3_1:-36203478 | Msa0356640:CDS |
| GTGTTACCTTCTGGTATTCT+AGG | 0.242497 | 3_1:+36204722 | None:intergenic |
| CAATGAGCTTGGTATTCTTT+AGG | 0.255171 | 3_1:+36203628 | None:intergenic |
| ATGGTCTATTGCAGTTAATT+TGG | 0.269737 | 3_1:-36202188 | Msa0356640:intron |
| TTCTTTAGGTCTTTAGGGTT+TGG | 0.285094 | 3_1:+36203642 | None:intergenic |
| CATACAAGAATCGATGATTA+TGG | 0.329909 | 3_1:-36201728 | Msa0356640:CDS |
| ACAGGCAAGAGAAATCTTAA+AGG | 0.362453 | 3_1:+36201523 | None:intergenic |
| CTGTGGTCCTGTTCTTGATC+AGG | 0.368709 | 3_1:-36201699 | Msa0356640:CDS |
| CGTTGGTTGAGTTGAAAATT+GGG | 0.369942 | 3_1:+36202134 | None:intergenic |
| GGAGCAGTCGAGCTTGTTGC+CGG | 0.370727 | 3_1:-36201992 | Msa0356640:CDS |
| AAGTAGATAGATAGAGAGGT+TGG | 0.375656 | 3_1:+36204893 | None:intergenic |
| TATGTTTCATTACCTCTTGT+AGG | 0.391188 | 3_1:+36203189 | None:intergenic |
| TTTGAAACATAAAGAAGAAC+AGG | 0.400015 | 3_1:+36201505 | None:intergenic |
| AATAGGTCTTGTTTGAATTG+TGG | 0.401459 | 3_1:-36201481 | Msa0356640:three_prime_UTR |
| TGTGAAAACTGAAGAGGGTT+TGG | 0.405632 | 3_1:+36204832 | None:intergenic |
| TGCAATGGCGCTTTCTCTGC+CGG | 0.406086 | 3_1:+36201973 | None:intergenic |
| TTCAATGTCCCATTCGGACT+TGG | 0.408118 | 3_1:-36202013 | Msa0356640:CDS |
| TCATTACCTCTTGTAGGCAT+TGG | 0.412756 | 3_1:+36203195 | None:intergenic |
| CTAAAGAATACCAAGCTCAT+TGG | 0.415170 | 3_1:-36203627 | Msa0356640:CDS |
| TCTTCAAAATGGAAACTTTG+AGG | 0.422549 | 3_1:-36203670 | Msa0356640:CDS |
| ATAGGTCTTGTTTGAATTGT+GGG | 0.431290 | 3_1:-36201480 | Msa0356640:three_prime_UTR |
| ATCTCTGTGCCACCACAAAC+TGG | 0.431643 | 3_1:-36203384 | Msa0356640:CDS |
| CAAACATTGTATAGTCTCAA+TGG | 0.435698 | 3_1:-36203348 | Msa0356640:CDS |
| AAAATGGGAAATCAATGGTT+TGG | 0.448163 | 3_1:-36203589 | Msa0356640:CDS |
| CTTTAATTCTTGGTGCATCA+AGG | 0.450617 | 3_1:-36203434 | Msa0356640:CDS |
| TTACCTCTTGTAGGCATTGG+AGG | 0.453519 | 3_1:+36203198 | None:intergenic |
| GATAGATAGAGAGGTTGGGT+TGG | 0.454615 | 3_1:+36204898 | None:intergenic |
| CAAATTCATATTTAAGCCAC+AGG | 0.459329 | 3_1:+36201665 | None:intergenic |
| TATGAATTTACCCTTCCCTT+CGG | 0.469027 | 3_1:+36201817 | None:intergenic |
| CTACCAAAATGGGAAATCAA+TGG | 0.469575 | 3_1:-36203594 | Msa0356640:CDS |
| AAGCATTTCAATGTCCCATT+CGG | 0.485220 | 3_1:-36202019 | Msa0356640:CDS |
| AAAGTTCCATTTAAATCCGA+AGG | 0.489665 | 3_1:-36201833 | Msa0356640:CDS |
| ACTATAACCTGATCAAGAAC+AGG | 0.503775 | 3_1:+36201692 | None:intergenic |
| AGTGAAGTAGATAGATAGAG+AGG | 0.505097 | 3_1:+36204889 | None:intergenic |
| TCCATTTAAATCCGAAGGGA+AGG | 0.505472 | 3_1:-36201828 | Msa0356640:CDS |
| CACACTCTTTCAAGTTCCAA+TGG | 0.510508 | 3_1:-36204813 | Msa0356640:exon |
| AGAGATCTTCTTGTTGTGGT+GGG | 0.513960 | 3_1:+36202101 | None:intergenic |
| TCTACTCACCACTCCCTGGT+TGG | 0.515615 | 3_1:-36202081 | Msa0356640:CDS |
| CGACTGCTCCAAGTCCGAAT+GGG | 0.519844 | 3_1:+36202005 | None:intergenic |
| GTTGAGTTGAAAATTGGGAA+TGG | 0.524305 | 3_1:+36202139 | None:intergenic |
| AGTAGATAGATAGAGAGGTT+GGG | 0.527374 | 3_1:+36204894 | None:intergenic |
| AAGAGTGTGAAAACTGAAGA+GGG | 0.529116 | 3_1:+36204827 | None:intergenic |
| AATGGACCCTCTTCAAAGCT+AGG | 0.531679 | 3_1:+36202157 | None:intergenic |
| AGAGAGAAGGGAAATTATGA+TGG | 0.536229 | 3_1:+36204933 | None:intergenic |
| ATTAAAGCATAGAGTTGACC+AGG | 0.539744 | 3_1:+36203450 | None:intergenic |
| GTGACTGGTGGTCCTCAACC+AGG | 0.542126 | 3_1:-36203558 | Msa0356640:CDS |
| TAGAGATCTTCTTGTTGTGG+TGG | 0.543583 | 3_1:+36202100 | None:intergenic |
| TCGACTGCTCCAAGTCCGAA+TGG | 0.550994 | 3_1:+36202004 | None:intergenic |
| CAATGGTGATGTTATTGCAT+GGG | 0.551959 | 3_1:-36203331 | Msa0356640:CDS |
| CAAACAATTAAGGTCAAACC+TGG | 0.553729 | 3_1:-36203468 | Msa0356640:CDS |
| TACAAGATCACATTCTCAGT+TGG | 0.553917 | 3_1:-36201920 | Msa0356640:CDS |
| AAAGGAACATCACCAGTTTG+TGG | 0.558532 | 3_1:+36203372 | None:intergenic |
| GAAAAGAGAGACACCGCCAT+TGG | 0.567460 | 3_1:+36204797 | None:intergenic |
| GAGTAGAGATCTTCTTGTTG+TGG | 0.568431 | 3_1:+36202097 | None:intergenic |
| TAGAATGTGAGTCTAGTCCT+TGG | 0.569730 | 3_1:+36201764 | None:intergenic |
| CCATTTAAATCCGAAGGGAA+GGG | 0.572389 | 3_1:-36201827 | Msa0356640:CDS |
| TGTTCTGAGAATTTGTGCAA+TGG | 0.574231 | 3_1:+36201958 | None:intergenic |
| TACCCTCCAATGCCTACAAG+AGG | 0.574344 | 3_1:-36203201 | Msa0356640:intron |
| GTAGGATCTTCTTGAACACC+AGG | 0.574842 | 3_1:+36203264 | None:intergenic |
| AGCTTTAAACTTGAAACTCA+CGG | 0.576730 | 3_1:+36201793 | None:intergenic |
| AGACTATACAATGTTTGCAA+AGG | 0.576811 | 3_1:+36203354 | None:intergenic |
| GGAACACATGCTGTGAGGCT+AGG | 0.578100 | 3_1:-36203510 | Msa0356640:CDS |
| AAAGAGTGTGAAAACTGAAG+AGG | 0.580625 | 3_1:+36204826 | None:intergenic |
| GCATGTGTTCCATGAGTCAC+CGG | 0.580993 | 3_1:+36203522 | None:intergenic |
| GATCTCTACTCACCACTCCC+TGG | 0.582407 | 3_1:-36202085 | Msa0356640:CDS |
| TCGATGATCCAACCAGGGAG+TGG | 0.586201 | 3_1:+36202073 | None:intergenic |
| TACCTCTTGTAGGCATTGGA+GGG | 0.588583 | 3_1:+36203199 | None:intergenic |
| ATAGCAATTGCATCAAGAAG+TGG | 0.589206 | 3_1:+36203234 | None:intergenic |
| TCAAGAAGTGGACCACAAGT+AGG | 0.610501 | 3_1:+36203246 | None:intergenic |
| AAGTTCCATTTAAATCCGAA+GGG | 0.616315 | 3_1:-36201832 | Msa0356640:CDS |
| AGAGACTCGATGATCCAACC+AGG | 0.627050 | 3_1:+36202067 | None:intergenic |
| TAGGTCTTGTTTGAATTGTG+GGG | 0.633979 | 3_1:-36201479 | Msa0356640:three_prime_UTR |
| GATGATTATGGCTCTCTCTG+TGG | 0.637773 | 3_1:-36201716 | Msa0356640:CDS |
| TGGTTGTCATGGATCAATGA+TGG | 0.645175 | 3_1:-36201885 | Msa0356640:CDS |
| GTTCAAGAAGATCCTACTTG+TGG | 0.647438 | 3_1:-36203258 | Msa0356640:CDS |
| AATGGTGATGTTATTGCATG+GGG | 0.650399 | 3_1:-36203330 | Msa0356640:CDS |
| AGTTTAAAGCTATCGCACCA+AGG | 0.662461 | 3_1:-36201781 | Msa0356640:CDS |
| GGTTTGGTAGAGTATGTGAC+TGG | 0.663787 | 3_1:-36203573 | Msa0356640:CDS |
| TTGGTAGAGTATGTGACTGG+TGG | 0.665537 | 3_1:-36203570 | Msa0356640:CDS |
| CTTCAGCCTAGAATACCAGA+AGG | 0.676116 | 3_1:-36204728 | Msa0356640:intron |
| AAATTCATATTTAAGCCACA+GGG | 0.678492 | 3_1:+36201666 | None:intergenic |
| TCAATGGTGATGTTATTGCA+TGG | 0.678740 | 3_1:-36203332 | Msa0356640:CDS |
| GGAACATCACCAGTTTGTGG+TGG | 0.691615 | 3_1:+36203375 | None:intergenic |
| ACTCTTTCAAGTTCCAATGG+CGG | 0.698046 | 3_1:-36204810 | Msa0356640:exon |
| TCAGGTTATAGTGTCCCCTG+TGG | 0.698590 | 3_1:-36201681 | Msa0356640:CDS |
| TAGGATCTTCTTGAACACCA+GGG | 0.704341 | 3_1:+36203265 | None:intergenic |
| TGGTGGGAGTAAAACACCGT+TGG | 0.711037 | 3_1:+36202117 | None:intergenic |
| CTCATGGAACACATGCTGTG+AGG | 0.712106 | 3_1:-36203515 | Msa0356640:CDS |
| AATTCATATTTAAGCCACAG+GGG | 0.736491 | 3_1:+36201667 | None:intergenic |
| ACTGGTGGTCCTCAACCAGG+AGG | 0.747255 | 3_1:-36203555 | Msa0356640:CDS |
| GAGACTCGATGATCCAACCA+GGG | 0.750509 | 3_1:+36202068 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATATCAAAATGAAA+GGG | + | chr3_1:36201736-36201755 | None:intergenic | 10.0% |
| !! | CAAAGTATAATAAAAAAAAA+AGG | + | chr3_1:36202077-36202096 | None:intergenic | 10.0% |
| !! | GTTATATATATCAAAATGAA+AGG | + | chr3_1:36201737-36201756 | None:intergenic | 15.0% |
| !!! | TTTTTTATTATACTTTGATG+TGG | - | chr3_1:36202080-36202099 | Msa0356640:CDS | 15.0% |
| !! | TTCTTTATGTTTCAAAAAAT+AGG | - | chr3_1:36204922-36204941 | Msa0356640:five_prime_UTR | 15.0% |
| !! | TCATTTCTTGTAAAAAATTG+TGG | - | chr3_1:36202125-36202144 | Msa0356640:CDS | 20.0% |
| !!! | ATTTGTTAGTACTTTTTATG+AGG | - | chr3_1:36202249-36202268 | Msa0356640:intron | 20.0% |
| !! | TTATTCTCTCAAATTACTAT+CGG | + | chr3_1:36202483-36202502 | None:intergenic | 20.0% |
| !! | TTCAATTTCTCAAACAATTA+AGG | - | chr3_1:36202942-36202961 | Msa0356640:intron | 20.0% |
| !! | AAAAATCTTATACTAACTGA+TGG | - | chr3_1:36203645-36203664 | Msa0356640:CDS | 20.0% |
| !!! | ATTAATGAATTTTCAGATGA+AGG | - | chr3_1:36203716-36203735 | Msa0356640:intron | 20.0% |
| !! | ACCAAAAAAATGAATTGAAA+AGG | - | chr3_1:36203836-36203855 | Msa0356640:intron | 20.0% |
| !! | CCAAAAAAATGAATTGAAAA+GGG | - | chr3_1:36203837-36203856 | Msa0356640:intron | 20.0% |
| !! | CAAAAAAATGAATTGAAAAG+GGG | - | chr3_1:36203838-36203857 | Msa0356640:intron | 20.0% |
| !!! | ATCGACTTCAAATATTTATT+TGG | - | chr3_1:36203881-36203900 | Msa0356640:intron | 20.0% |
| !!! | ATAATCATTAATGGCTTTAT+CGG | + | chr3_1:36204214-36204233 | None:intergenic | 20.0% |
| !!! | AGTTATAGAGTTTTAATGTA+AGG | - | chr3_1:36204778-36204797 | Msa0356640:CDS | 20.0% |
| !! | TTTTTATATTGGAGAGAGAA+GGG | + | chr3_1:36201502-36201521 | None:intergenic | 25.0% |
| ! | TTATTTGTTTCACATTGTTC+AGG | - | chr3_1:36201827-36201846 | Msa0356640:CDS | 25.0% |
| ! | AAAAGTTAGCTCAAAAGATA+AGG | + | chr3_1:36201891-36201910 | None:intergenic | 25.0% |
| ! | AAAACAACTCATCTAAATGA+AGG | + | chr3_1:36202015-36202034 | None:intergenic | 25.0% |
| ! | TGAACAAAGTTTCAATTTCT+TGG | - | chr3_1:36202310-36202329 | Msa0356640:intron | 25.0% |
| ! | ATCTATGTAATCATATGTGT+CGG | - | chr3_1:36202505-36202524 | Msa0356640:intron | 25.0% |
| ! | TTTGCAGTTTATCTTCAAAA+TGG | - | chr3_1:36202739-36202758 | Msa0356640:intron | 25.0% |
| !! | AAAATTTTCCCTACCAAAAT+GGG | - | chr3_1:36202816-36202835 | Msa0356640:intron | 25.0% |
| ! | AGTATTTAACAAAACTGATG+TGG | + | chr3_1:36203258-36203277 | None:intergenic | 25.0% |
| ! | ATGTCAAATAGTAACTATAG+TGG | - | chr3_1:36203470-36203489 | Msa0356640:CDS | 25.0% |
| ! | TCTACATAATTGAACTTAAC+AGG | - | chr3_1:36203569-36203588 | Msa0356640:CDS | 25.0% |
| !!! | CACTTGATAAGAACTTTTTT+TGG | - | chr3_1:36203592-36203611 | Msa0356640:CDS | 25.0% |
| !!! | CCCTTTTCAATTCATTTTTT+TGG | + | chr3_1:36203840-36203859 | None:intergenic | 25.0% |
| ! | GCAAAAAAACATACATTTGA+GGG | + | chr3_1:36203908-36203927 | None:intergenic | 25.0% |
| ! | TGCAAAAAAACATACATTTG+AGG | + | chr3_1:36203909-36203928 | None:intergenic | 25.0% |
| ! | ATGGTTACATTCAATCATTT+CGG | + | chr3_1:36204083-36204102 | None:intergenic | 25.0% |
| !! | TATGATCTTAGCATTTCTTT+TGG | - | chr3_1:36204160-36204179 | Msa0356640:intron | 25.0% |
| ! | GATAAAGCCATTAATGATTA+TGG | - | chr3_1:36204213-36204232 | Msa0356640:intron | 25.0% |
| ! | CAATAGACCATAATCATTAA+TGG | + | chr3_1:36204223-36204242 | None:intergenic | 25.0% |
| ! | AAATTCATATTTAAGCCACA+GGG | + | chr3_1:36204757-36204776 | None:intergenic | 25.0% |
| !!! | TAGAGTTTTAATGTAAGGTA+TGG | - | chr3_1:36204783-36204802 | Msa0356640:CDS | 25.0% |
| !! | TTTGAAACATAAAGAAGAAC+AGG | + | chr3_1:36204918-36204937 | None:intergenic | 25.0% |
| ! | GTTTTTATATTGGAGAGAGA+AGG | + | chr3_1:36201503-36201522 | None:intergenic | 30.0% |
| ! | CAGAATCATTCGATACATTT+TGG | - | chr3_1:36201935-36201954 | Msa0356640:CDS | 30.0% |
| ! | TCTAAATGAAGGTACATGAA+AGG | + | chr3_1:36202004-36202023 | None:intergenic | 30.0% |
| TTATACTTTGATGTGGTTGT+TGG | - | chr3_1:36202087-36202106 | Msa0356640:CDS | 30.0% | |
| !! | GCTTTAAGATCTGTCATTTA+TGG | - | chr3_1:36202151-36202170 | Msa0356640:CDS | 30.0% |
| ATTTATGGTGAAGTTTGAGT+GGG | - | chr3_1:36202166-36202185 | Msa0356640:CDS | 30.0% | |
| ! | ACAAATTTAGGGTCTCAAAT+AGG | + | chr3_1:36202384-36202403 | None:intergenic | 30.0% |
| ACAGACAATACTTCAACAAA+GGG | + | chr3_1:36202412-36202431 | None:intergenic | 30.0% | |
| AACAGACAATACTTCAACAA+AGG | + | chr3_1:36202413-36202432 | None:intergenic | 30.0% | |
| ! | TATATGTGCTTTGTAGGTTT+TGG | - | chr3_1:36202588-36202607 | Msa0356640:intron | 30.0% |
| !! | TGCTTTTTAACCAAGGAAAA+AGG | + | chr3_1:36202632-36202651 | None:intergenic | 30.0% |
| GATAAACTGCAAAGATAAGA+AGG | + | chr3_1:36202732-36202751 | None:intergenic | 30.0% | |
| TCTTCAAAATGGAAACTTTG+AGG | - | chr3_1:36202750-36202769 | Msa0356640:intron | 30.0% | |
| TGGTATTCTTTAGGTCTTTA+GGG | + | chr3_1:36202786-36202805 | None:intergenic | 30.0% | |
| TTGGTATTCTTTAGGTCTTT+AGG | + | chr3_1:36202787-36202806 | None:intergenic | 30.0% | |
| ! | GAAAATTTTCCCTACCAAAA+TGG | - | chr3_1:36202815-36202834 | Msa0356640:intron | 30.0% |
| !! | ATTGATTTCCCATTTTGGTA+GGG | + | chr3_1:36202827-36202846 | None:intergenic | 30.0% |
| !!! | AAACCATTGATTTCCCATTT+TGG | + | chr3_1:36202832-36202851 | None:intergenic | 30.0% |
| AAAATGGGAAATCAATGGTT+TGG | - | chr3_1:36202831-36202850 | Msa0356640:intron | 30.0% | |
| CAACTCTATGCTTTAATTCT+TGG | - | chr3_1:36202976-36202995 | Msa0356640:intron | 30.0% | |
| AGACTATACAATGTTTGCAA+AGG | + | chr3_1:36203069-36203088 | None:intergenic | 30.0% | |
| CAAACATTGTATAGTCTCAA+TGG | - | chr3_1:36203072-36203091 | Msa0356640:intron | 30.0% | |
| TATGTTTCATTACCTCTTGT+AGG | + | chr3_1:36203234-36203253 | None:intergenic | 30.0% | |
| ACAAGCACTAAATAGCATAT+TGG | + | chr3_1:36203322-36203341 | None:intergenic | 30.0% | |
| TTAGTGCTTGTTTGATATCA+TGG | - | chr3_1:36203331-36203350 | Msa0356640:CDS | 30.0% | |
| ATATGATAGACCAAAGAACA+TGG | + | chr3_1:36203748-36203767 | None:intergenic | 30.0% | |
| !! | TTGCTAACGTTTCTTTTTCA+TGG | - | chr3_1:36203812-36203831 | Msa0356640:intron | 30.0% |
| !! | AAAAGAGTTGCGCTTTTTAA+TGG | - | chr3_1:36203949-36203968 | Msa0356640:intron | 30.0% |
| CTATTTAGTAATTCCCTTGA+AGG | - | chr3_1:36203998-36204017 | Msa0356640:intron | 30.0% | |
| ATGGTCTATTGCAGTTAATT+TGG | - | chr3_1:36204232-36204251 | Msa0356640:intron | 30.0% | |
| !! | AAAAATCCTAGCTTTGAAGA+GGG | - | chr3_1:36204257-36204276 | Msa0356640:intron | 30.0% |
| AAAGTTCCATTTAAATCCGA+AGG | - | chr3_1:36204587-36204606 | Msa0356640:intron | 30.0% | |
| AAGTTCCATTTAAATCCGAA+GGG | - | chr3_1:36204588-36204607 | Msa0356640:intron | 30.0% | |
| !! | AGCTTTAAACTTGAAACTCA+CGG | + | chr3_1:36204630-36204649 | None:intergenic | 30.0% |
| CATACAAGAATCGATGATTA+TGG | - | chr3_1:36204692-36204711 | Msa0356640:intron | 30.0% | |
| AATTCATATTTAAGCCACAG+GGG | + | chr3_1:36204756-36204775 | None:intergenic | 30.0% | |
| CAAATTCATATTTAAGCCAC+AGG | + | chr3_1:36204758-36204777 | None:intergenic | 30.0% | |
| !! | GTTTTAATGTAAGGTATGGT+TGG | - | chr3_1:36204787-36204806 | Msa0356640:CDS | 30.0% |
| !! | AATAGGTCTTGTTTGAATTG+TGG | - | chr3_1:36204939-36204958 | Msa0356640:five_prime_UTR | 30.0% |
| !! | ATAGGTCTTGTTTGAATTGT+GGG | - | chr3_1:36204940-36204959 | Msa0356640:five_prime_UTR | 30.0% |
| AGAGAGAAGGGAAATTATGA+TGG | + | chr3_1:36201490-36201509 | None:intergenic | 35.0% | |
| !!! | GGTTGGGTTGGTTTTTATAT+TGG | + | chr3_1:36201513-36201532 | None:intergenic | 35.0% |
| AGTAGATAGATAGAGAGGTT+GGG | + | chr3_1:36201529-36201548 | None:intergenic | 35.0% | |
| AAGTAGATAGATAGAGAGGT+TGG | + | chr3_1:36201530-36201549 | None:intergenic | 35.0% | |
| AGTGAAGTAGATAGATAGAG+AGG | + | chr3_1:36201534-36201553 | None:intergenic | 35.0% | |
| ! | AAGAGTGTGAAAACTGAAGA+GGG | + | chr3_1:36201596-36201615 | None:intergenic | 35.0% |
| ! | AAAGAGTGTGAAAACTGAAG+AGG | + | chr3_1:36201597-36201616 | None:intergenic | 35.0% |
| CATTTATGGTGAAGTTTGAG+TGG | - | chr3_1:36202165-36202184 | Msa0356640:CDS | 35.0% | |
| ! | AAAGGGGTGCAACAAATTTA+GGG | + | chr3_1:36202395-36202414 | None:intergenic | 35.0% |
| CAGACAATACTTCAACAAAG+GGG | + | chr3_1:36202411-36202430 | None:intergenic | 35.0% | |
| TACAAAGCACATATACTCAG+CGG | + | chr3_1:36202583-36202602 | None:intergenic | 35.0% | |
| ! | GAACAAGATCTGAAGTTGTT+TGG | - | chr3_1:36202691-36202710 | Msa0356640:intron | 35.0% |
| !! | TTCTTTAGGTCTTTAGGGTT+TGG | + | chr3_1:36202781-36202800 | None:intergenic | 35.0% |
| CAATGAGCTTGGTATTCTTT+AGG | + | chr3_1:36202795-36202814 | None:intergenic | 35.0% | |
| CTAAAGAATACCAAGCTCAT+TGG | - | chr3_1:36202793-36202812 | Msa0356640:intron | 35.0% | |
| ! | GGAAAATTTTCCAATGAGCT+TGG | + | chr3_1:36202806-36202825 | None:intergenic | 35.0% |
| !!! | CATTGATTTCCCATTTTGGT+AGG | + | chr3_1:36202828-36202847 | None:intergenic | 35.0% |
| CTACCAAAATGGGAAATCAA+TGG | - | chr3_1:36202826-36202845 | Msa0356640:intron | 35.0% | |
| CAAACAATTAAGGTCAAACC+TGG | - | chr3_1:36202952-36202971 | Msa0356640:intron | 35.0% | |
| ATTAAAGCATAGAGTTGACC+AGG | + | chr3_1:36202973-36202992 | None:intergenic | 35.0% | |
| ! | CTTTAATTCTTGGTGCATCA+AGG | - | chr3_1:36202986-36203005 | Msa0356640:intron | 35.0% |
| ! | TCAATGGTGATGTTATTGCA+TGG | - | chr3_1:36203088-36203107 | Msa0356640:intron | 35.0% |
| ! | CAATGGTGATGTTATTGCAT+GGG | - | chr3_1:36203089-36203108 | Msa0356640:intron | 35.0% |
| ! | AATGGTGATGTTATTGCATG+GGG | - | chr3_1:36203090-36203109 | Msa0356640:intron | 35.0% |
| ! | AAAGTGACTTTTCATAACCC+TGG | - | chr3_1:36203138-36203157 | Msa0356640:intron | 35.0% |
| ATAGCAATTGCATCAAGAAG+TGG | + | chr3_1:36203189-36203208 | None:intergenic | 35.0% | |
| TTGTAGCTTCGACAAAATCA+TGG | - | chr3_1:36203389-36203408 | Msa0356640:CDS | 35.0% | |
| TGTAGAATCCTAGAAGTGAA+GGG | + | chr3_1:36203555-36203574 | None:intergenic | 35.0% | |
| ATGTAGAATCCTAGAAGTGA+AGG | + | chr3_1:36203556-36203575 | None:intergenic | 35.0% | |
| ! | AAGGTTGTTTCCATGTTCTT+TGG | - | chr3_1:36203735-36203754 | Msa0356640:intron | 35.0% |
| ! | TGAAAAGGGGAGTATGTATT+TGG | - | chr3_1:36203851-36203870 | Msa0356640:intron | 35.0% |
| !! | GCAACTCTTTTAAGTGTGTT+TGG | + | chr3_1:36203940-36203959 | None:intergenic | 35.0% |
| GTAATTCCCTTGAAGGATAT+TGG | - | chr3_1:36204005-36204024 | Msa0356640:intron | 35.0% | |
| AAGGATCCAATATCCTTCAA+GGG | + | chr3_1:36204014-36204033 | None:intergenic | 35.0% | |
| TAAGGATCCAATATCCTTCA+AGG | + | chr3_1:36204015-36204034 | None:intergenic | 35.0% | |
| GATTGAATGTAACCATGTGT+TGG | - | chr3_1:36204087-36204106 | Msa0356640:intron | 35.0% | |
| ! | TTTTGTAGCACTAACACTTC+AGG | + | chr3_1:36204140-36204159 | None:intergenic | 35.0% |
| !! | GAAAAATCCTAGCTTTGAAG+AGG | - | chr3_1:36204256-36204275 | Msa0356640:intron | 35.0% |
| !! | GTTGAGTTGAAAATTGGGAA+TGG | + | chr3_1:36204284-36204303 | None:intergenic | 35.0% |
| !! | CGTTGGTTGAGTTGAAAATT+GGG | + | chr3_1:36204289-36204308 | None:intergenic | 35.0% |
| ! | CCAATTTTCAACTCAACCAA+CGG | - | chr3_1:36204287-36204306 | Msa0356640:intron | 35.0% |
| AAGCATTTCAATGTCCCATT+CGG | - | chr3_1:36204401-36204420 | Msa0356640:intron | 35.0% | |
| !! | TGTTCTGAGAATTTGTGCAA+TGG | + | chr3_1:36204465-36204484 | None:intergenic | 35.0% |
| TACAAGATCACATTCTCAGT+TGG | - | chr3_1:36204500-36204519 | Msa0356640:intron | 35.0% | |
| TATGAATTTACCCTTCCCTT+CGG | + | chr3_1:36204606-36204625 | None:intergenic | 35.0% | |
| ACTATAACCTGATCAAGAAC+AGG | + | chr3_1:36204731-36204750 | None:intergenic | 35.0% | |
| ! | TTTTGCAAGTCTTTTGAGCT+TGG | - | chr3_1:36204820-36204839 | Msa0356640:five_prime_UTR | 35.0% |
| ACAGGCAAGAGAAATCTTAA+AGG | + | chr3_1:36204900-36204919 | None:intergenic | 35.0% | |
| !! | TAGGTCTTGTTTGAATTGTG+GGG | - | chr3_1:36204941-36204960 | Msa0356640:five_prime_UTR | 35.0% |
| TGTGAAAACTGAAGAGGGTT+TGG | + | chr3_1:36201591-36201610 | None:intergenic | 40.0% | |
| !! | CACACTCTTTCAAGTTCCAA+TGG | - | chr3_1:36201607-36201626 | Msa0356640:three_prime_UTR | 40.0% |
| !! | ACTCTTTCAAGTTCCAATGG+CGG | - | chr3_1:36201610-36201629 | Msa0356640:three_prime_UTR | 40.0% |
| GTGTTACCTTCTGGTATTCT+AGG | + | chr3_1:36201701-36201720 | None:intergenic | 40.0% | |
| TAGATGTGTGTGTTACCTTC+TGG | + | chr3_1:36201710-36201729 | None:intergenic | 40.0% | |
| GTTTCACATTGTTCAGGTGT+CGG | - | chr3_1:36201833-36201852 | Msa0356640:CDS | 40.0% | |
| ! | TGGTTGTTGGAGTCACTTTA+TGG | - | chr3_1:36202100-36202119 | Msa0356640:CDS | 40.0% |
| ! | GGTTGTTGGAGTCACTTTAT+GGG | - | chr3_1:36202101-36202120 | Msa0356640:CDS | 40.0% |
| GGTAAGCAAGATAGATACTG+TGG | - | chr3_1:36202187-36202206 | Msa0356640:intron | 40.0% | |
| AGCAAGATAGATACTGTGGT+TGG | - | chr3_1:36202191-36202210 | Msa0356640:intron | 40.0% | |
| ! | CAAAGGGGTGCAACAAATTT+AGG | + | chr3_1:36202396-36202415 | None:intergenic | 40.0% |
| !! | CACATATACTCAGCGGATTA+GGG | + | chr3_1:36202576-36202595 | None:intergenic | 40.0% |
| GCTGAGTATATGTGCTTTGT+AGG | - | chr3_1:36202582-36202601 | Msa0356640:intron | 40.0% | |
| ! | AGTCTTTACGCCTTTTTCCT+TGG | - | chr3_1:36202619-36202638 | Msa0356640:intron | 40.0% |
| !!! | CCAAGGTTGCTTTTTAACCA+AGG | + | chr3_1:36202639-36202658 | None:intergenic | 40.0% |
| CCTTGGTTAAAAAGCAACCT+TGG | - | chr3_1:36202636-36202655 | Msa0356640:intron | 40.0% | |
| CAACCTTGGTTGAAGAGAAT+GGG | - | chr3_1:36202650-36202669 | Msa0356640:intron | 40.0% | |
| !!! | ATGTTTTTTCCGGTGACTCA+TGG | - | chr3_1:36202889-36202908 | Msa0356640:intron | 40.0% |
| AAAGGAACATCACCAGTTTG+TGG | + | chr3_1:36203051-36203070 | None:intergenic | 40.0% | |
| TAGGATCTTCTTGAACACCA+GGG | + | chr3_1:36203158-36203177 | None:intergenic | 40.0% | |
| GTTCAAGAAGATCCTACTTG+TGG | - | chr3_1:36203162-36203181 | Msa0356640:intron | 40.0% | |
| TCATTACCTCTTGTAGGCAT+TGG | + | chr3_1:36203228-36203247 | None:intergenic | 40.0% | |
| TAGCTTCGACAAAATCATGG+TGG | - | chr3_1:36203392-36203411 | Msa0356640:CDS | 40.0% | |
| CTATCAGTTCTCCACTACTT+AGG | - | chr3_1:36203670-36203689 | Msa0356640:CDS | 40.0% | |
| CACATAACACACCTAAGTAG+TGG | + | chr3_1:36203684-36203703 | None:intergenic | 40.0% | |
| CACTACTTAGGTGTGTTATG+TGG | - | chr3_1:36203682-36203701 | Msa0356640:intron | 40.0% | |
| ! | AAGGGGAGTATGTATTTGGT+TGG | - | chr3_1:36203855-36203874 | Msa0356640:intron | 40.0% |
| GATCCTTACCTATGAAGCAT+GGG | - | chr3_1:36204027-36204046 | Msa0356640:intron | 40.0% | |
| !! | CCGTTGGTTGAGTTGAAAAT+TGG | + | chr3_1:36204290-36204309 | None:intergenic | 40.0% |
| ! | AGAGATCTTCTTGTTGTGGT+GGG | + | chr3_1:36204322-36204341 | None:intergenic | 40.0% |
| ! | TAGAGATCTTCTTGTTGTGG+TGG | + | chr3_1:36204323-36204342 | None:intergenic | 40.0% |
| GAGTAGAGATCTTCTTGTTG+TGG | + | chr3_1:36204326-36204345 | None:intergenic | 40.0% | |
| TGGTTGTCATGGATCAATGA+TGG | - | chr3_1:36204535-36204554 | Msa0356640:intron | 40.0% | |
| TCCATTTAAATCCGAAGGGA+AGG | - | chr3_1:36204592-36204611 | Msa0356640:intron | 40.0% | |
| CCATTTAAATCCGAAGGGAA+GGG | - | chr3_1:36204593-36204612 | Msa0356640:intron | 40.0% | |
| ! | AGTTTAAAGCTATCGCACCA+AGG | - | chr3_1:36204639-36204658 | Msa0356640:intron | 40.0% |
| TAGAATGTGAGTCTAGTCCT+TGG | + | chr3_1:36204659-36204678 | None:intergenic | 40.0% | |
| GATAGATAGAGAGGTTGGGT+TGG | + | chr3_1:36201525-36201544 | None:intergenic | 45.0% | |
| TGAAAAAGCAGAGCGAAGTC+TGG | + | chr3_1:36201558-36201577 | None:intergenic | 45.0% | |
| CTTCAGCCTAGAATACCAGA+AGG | - | chr3_1:36201692-36201711 | Msa0356640:CDS | 45.0% | |
| CATGATATCTATCCGACACC+AGG | - | chr3_1:36202547-36202566 | Msa0356640:intron | 45.0% | |
| ! | GCACATATACTCAGCGGATT+AGG | + | chr3_1:36202577-36202596 | None:intergenic | 45.0% |
| GCAACCTTGGTTGAAGAGAA+TGG | - | chr3_1:36202649-36202668 | Msa0356640:intron | 45.0% | |
| TCTCCCATTCTCTTCAACCA+AGG | + | chr3_1:36202656-36202675 | None:intergenic | 45.0% | |
| GAAGAGAATGGGAGACTTTC+TGG | - | chr3_1:36202661-36202680 | Msa0356640:intron | 45.0% | |
| ! | GGTTTGGTAGAGTATGTGAC+TGG | - | chr3_1:36202847-36202866 | Msa0356640:intron | 45.0% |
| TTGGTAGAGTATGTGACTGG+TGG | - | chr3_1:36202850-36202869 | Msa0356640:intron | 45.0% | |
| AAAAACATGCCTCCTGGTTG+AGG | + | chr3_1:36202877-36202896 | None:intergenic | 45.0% | |
| !!! | ACCAGGAGGCATGTTTTTTC+CGG | - | chr3_1:36202879-36202898 | Msa0356640:intron | 45.0% |
| GTAGGATCTTCTTGAACACC+AGG | + | chr3_1:36203159-36203178 | None:intergenic | 45.0% | |
| TCAAGAAGTGGACCACAAGT+AGG | + | chr3_1:36203177-36203196 | None:intergenic | 45.0% | |
| !! | TACCTCTTGTAGGCATTGGA+GGG | + | chr3_1:36203224-36203243 | None:intergenic | 45.0% |
| !! | TTACCTCTTGTAGGCATTGG+AGG | + | chr3_1:36203225-36203244 | None:intergenic | 45.0% |
| TCATGGTGAGTTTGACACTG+TGG | - | chr3_1:36203348-36203367 | Msa0356640:CDS | 45.0% | |
| CAAGTGTGTGTCCTGTATCA+CGG | + | chr3_1:36203440-36203459 | None:intergenic | 45.0% | |
| TAGGCATGGTATGTGCATCA+GGG | + | chr3_1:36203530-36203549 | None:intergenic | 45.0% | |
| ATAGGCATGGTATGTGCATC+AGG | + | chr3_1:36203531-36203550 | None:intergenic | 45.0% | |
| ! | ATCCTAGAAGTGAAGGGCAT+AGG | + | chr3_1:36203549-36203568 | None:intergenic | 45.0% |
| GGATCCTTACCTATGAAGCA+TGG | - | chr3_1:36204026-36204045 | Msa0356640:intron | 45.0% | |
| TGTATGTGCCCATGCTTCAT+AGG | + | chr3_1:36204038-36204057 | None:intergenic | 45.0% | |
| AATGGACCCTCTTCAAAGCT+AGG | + | chr3_1:36204266-36204285 | None:intergenic | 45.0% | |
| TTCAATGTCCCATTCGGACT+TGG | - | chr3_1:36204407-36204426 | Msa0356640:intron | 45.0% | |
| TCAGTTGGAGACGCGAAAAA+TGG | - | chr3_1:36204515-36204534 | Msa0356640:intron | 45.0% | |
| GACGCGAAAAATGGTTGTCA+TGG | - | chr3_1:36204524-36204543 | Msa0356640:intron | 45.0% | |
| CCCTTCCCTTCGGATTTAAA+TGG | + | chr3_1:36204596-36204615 | None:intergenic | 45.0% | |
| GATGATTATGGCTCTCTCTG+TGG | - | chr3_1:36204704-36204723 | Msa0356640:intron | 45.0% | |
| GAAAAGAGAGACACCGCCAT+TGG | + | chr3_1:36201626-36201645 | None:intergenic | 50.0% | |
| CGACATGTCTGTATCGTGTC+TGG | + | chr3_1:36202457-36202476 | None:intergenic | 50.0% | |
| !! | GTCGGTGTTGTGTCATGTGT+CGG | - | chr3_1:36202523-36202542 | Msa0356640:intron | 50.0% |
| ! | TGGGAGACTTTCTGGTGTAC+TGG | - | chr3_1:36202669-36202688 | Msa0356640:intron | 50.0% |
| ACCGGAAAAAACATGCCTCC+TGG | + | chr3_1:36202883-36202902 | None:intergenic | 50.0% | |
| GCATGTGTTCCATGAGTCAC+CGG | + | chr3_1:36202901-36202920 | None:intergenic | 50.0% | |
| CTCATGGAACACATGCTGTG+AGG | - | chr3_1:36202905-36202924 | Msa0356640:intron | 50.0% | |
| ATCTCTGTGCCACCACAAAC+TGG | - | chr3_1:36203036-36203055 | Msa0356640:intron | 50.0% | |
| GGAACATCACCAGTTTGTGG+TGG | + | chr3_1:36203048-36203067 | None:intergenic | 50.0% | |
| TACCCTCCAATGCCTACAAG+AGG | - | chr3_1:36203219-36203238 | Msa0356640:CDS | 50.0% | |
| TGTGTGTCCTGTATCACGGT+GGG | + | chr3_1:36203436-36203455 | None:intergenic | 50.0% | |
| CGTGATACAGGACACACACT+TGG | - | chr3_1:36203438-36203457 | Msa0356640:CDS | 50.0% | |
| ! | AGAAGTGAAGGGCATAGGCA+TGG | + | chr3_1:36203544-36203563 | None:intergenic | 50.0% |
| TGCCTATGCCCTTCACTTCT+AGG | - | chr3_1:36203544-36203563 | Msa0356640:CDS | 50.0% | |
| GTGCCCATGCTTCATAGGTA+AGG | + | chr3_1:36204033-36204052 | None:intergenic | 50.0% | |
| !! | ACCATGTGTTGGTGTCGTGT+CGG | - | chr3_1:36204098-36204117 | Msa0356640:intron | 50.0% |
| TGGTGGGAGTAAAACACCGT+TGG | + | chr3_1:36204306-36204325 | None:intergenic | 50.0% | |
| GAGACTCGATGATCCAACCA+GGG | + | chr3_1:36204355-36204374 | None:intergenic | 50.0% | |
| AGAGACTCGATGATCCAACC+AGG | + | chr3_1:36204356-36204375 | None:intergenic | 50.0% | |
| CTGTGGTCCTGTTCTTGATC+AGG | - | chr3_1:36204721-36204740 | Msa0356640:intron | 50.0% | |
| TCAGGTTATAGTGTCCCCTG+TGG | - | chr3_1:36204739-36204758 | Msa0356640:CDS | 50.0% | |
| ! | GGATTAGGGTGTCCTGGTGT+CGG | + | chr3_1:36202562-36202581 | None:intergenic | 55.0% |
| GGAACACATGCTGTGAGGCT+AGG | - | chr3_1:36202910-36202929 | Msa0356640:intron | 55.0% | |
| TGTCCAACCCACCGTGATAC+AGG | - | chr3_1:36203426-36203445 | Msa0356640:CDS | 55.0% | |
| TGTCCTGTATCACGGTGGGT+TGG | + | chr3_1:36203432-36203451 | None:intergenic | 55.0% | |
| GTGTGTGTCCTGTATCACGG+TGG | + | chr3_1:36203437-36203456 | None:intergenic | 55.0% | |
| TCCGACACGACACCAACACA+TGG | + | chr3_1:36204102-36204121 | None:intergenic | 55.0% | |
| !! | TGTGTTGGTGTCGTGTCGGA+TGG | - | chr3_1:36204102-36204121 | Msa0356640:intron | 55.0% |
| GATCTCTACTCACCACTCCC+TGG | - | chr3_1:36204335-36204354 | Msa0356640:intron | 55.0% | |
| TCTACTCACCACTCCCTGGT+TGG | - | chr3_1:36204339-36204358 | Msa0356640:intron | 55.0% | |
| TCGATGATCCAACCAGGGAG+TGG | + | chr3_1:36204350-36204369 | None:intergenic | 55.0% | |
| CGACTGCTCCAAGTCCGAAT+GGG | + | chr3_1:36204418-36204437 | None:intergenic | 55.0% | |
| TCGACTGCTCCAAGTCCGAA+TGG | + | chr3_1:36204419-36204438 | None:intergenic | 55.0% | |
| TGCAATGGCGCTTTCTCTGC+CGG | + | chr3_1:36204450-36204469 | None:intergenic | 55.0% | |
| !! | CTCAGCGGATTAGGGTGTCC+TGG | + | chr3_1:36202568-36202587 | None:intergenic | 60.0% |
| GTGACTGGTGGTCCTCAACC+AGG | - | chr3_1:36202862-36202881 | Msa0356640:intron | 60.0% | |
| ACTGGTGGTCCTCAACCAGG+AGG | - | chr3_1:36202865-36202884 | Msa0356640:intron | 60.0% | |
| !! | GGAGCAGTCGAGCTTGTTGC+CGG | - | chr3_1:36204428-36204447 | Msa0356640:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 36201462 | 36204980 | 36201462 | ID=Msa0356640;Name=Msa0356640 |
| chr3_1 | mRNA | 36201462 | 36204980 | 36201462 | ID=Msa0356640-mRNA-1;Parent=Msa0356640;Name=Msa0356640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=164|1|1|1|1|1|3|214|367 |
| chr3_1 | exon | 36201462 | 36202196 | 36201462 | ID=Msa0356640-mRNA-1:exon:6677;Parent=Msa0356640-mRNA-1 |
| chr3_1 | exon | 36203202 | 36203696 | 36203202 | ID=Msa0356640-mRNA-1:exon:6676;Parent=Msa0356640-mRNA-1 |
| chr3_1 | exon | 36204729 | 36204980 | 36204729 | ID=Msa0356640-mRNA-1:exon:6675;Parent=Msa0356640-mRNA-1 |
| chr3_1 | five_prime_UTR | 36204817 | 36204980 | 36204817 | ID=Msa0356640-mRNA-1:five_prime_utr;Parent=Msa0356640-mRNA-1 |
| chr3_1 | CDS | 36204729 | 36204816 | 36204729 | ID=Msa0356640-mRNA-1:cds;Parent=Msa0356640-mRNA-1 |
| chr3_1 | CDS | 36203202 | 36203696 | 36203202 | ID=Msa0356640-mRNA-1:cds;Parent=Msa0356640-mRNA-1 |
| chr3_1 | CDS | 36201676 | 36202196 | 36201676 | ID=Msa0356640-mRNA-1:cds;Parent=Msa0356640-mRNA-1 |
| chr3_1 | three_prime_UTR | 36201462 | 36201675 | 36201462 | ID=Msa0356640-mRNA-1:three_prime_utr;Parent=Msa0356640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
